Multiple sequence alignment - TraesCS4D01G089000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G089000 chr4D 100.000 6810 0 0 1 6810 64548434 64541625 0.000000e+00 12576
1 TraesCS4D01G089000 chr4D 94.444 90 5 0 5337 5426 24455885 24455796 9.210000e-29 139
2 TraesCS4D01G089000 chr4B 96.760 2438 63 7 798 3229 95078758 95076331 0.000000e+00 4050
3 TraesCS4D01G089000 chr4B 96.737 2084 63 3 3260 5340 95076334 95074253 0.000000e+00 3467
4 TraesCS4D01G089000 chr4B 93.968 1177 46 5 5421 6592 95074255 95073099 0.000000e+00 1757
5 TraesCS4D01G089000 chr4B 94.143 700 32 2 15 707 95079451 95078754 0.000000e+00 1057
6 TraesCS4D01G089000 chr4B 88.976 254 21 2 6563 6810 95073092 95072840 2.390000e-79 307
7 TraesCS4D01G089000 chr4B 94.444 90 5 0 5337 5426 187091151 187091062 9.210000e-29 139
8 TraesCS4D01G089000 chr2B 98.077 104 2 0 697 800 397451386 397451489 1.510000e-41 182
9 TraesCS4D01G089000 chr2B 98.058 103 2 0 698 800 127747515 127747413 5.430000e-41 180
10 TraesCS4D01G089000 chr2B 97.170 106 1 2 704 809 774087857 774087960 1.950000e-40 178
11 TraesCS4D01G089000 chr2B 89.908 109 11 0 1599 1707 705871384 705871276 2.560000e-29 141
12 TraesCS4D01G089000 chr3B 97.115 104 3 0 701 804 548551252 548551149 7.020000e-40 176
13 TraesCS4D01G089000 chr3B 94.690 113 5 1 689 801 629921487 629921376 2.520000e-39 174
14 TraesCS4D01G089000 chr2A 97.143 105 2 1 701 805 619208029 619208132 7.020000e-40 176
15 TraesCS4D01G089000 chr2A 95.652 92 3 1 5330 5421 17927477 17927567 5.500000e-31 147
16 TraesCS4D01G089000 chr1B 96.296 108 2 2 704 811 328139782 328139677 7.020000e-40 176
17 TraesCS4D01G089000 chr1B 96.117 103 4 0 698 800 171887310 171887412 1.170000e-37 169
18 TraesCS4D01G089000 chr1B 97.938 97 2 0 704 800 526192315 526192411 1.170000e-37 169
19 TraesCS4D01G089000 chr1B 85.593 118 17 0 1598 1715 160325215 160325332 2.580000e-24 124
20 TraesCS4D01G089000 chr5A 93.519 108 5 2 1600 1707 690948220 690948325 7.070000e-35 159
21 TraesCS4D01G089000 chr5A 90.741 108 10 0 1600 1707 635272825 635272718 1.980000e-30 145
22 TraesCS4D01G089000 chr2D 91.892 111 9 0 1600 1710 392161776 392161666 9.140000e-34 156
23 TraesCS4D01G089000 chr5D 90.826 109 9 1 1600 1707 507564510 507564402 1.980000e-30 145
24 TraesCS4D01G089000 chr4A 93.548 93 6 0 5337 5429 614251430 614251522 9.210000e-29 139
25 TraesCS4D01G089000 chr4A 94.444 90 4 1 5333 5422 464687277 464687365 3.310000e-28 137
26 TraesCS4D01G089000 chr4A 93.478 92 6 0 5333 5424 580898485 580898394 3.310000e-28 137
27 TraesCS4D01G089000 chr6D 92.708 96 5 2 5328 5422 268067104 268067198 3.310000e-28 137
28 TraesCS4D01G089000 chr6D 90.816 98 9 0 5337 5434 3274435 3274338 1.540000e-26 132
29 TraesCS4D01G089000 chr6D 90.625 96 9 0 1597 1692 36072798 36072893 1.990000e-25 128
30 TraesCS4D01G089000 chr6B 93.548 93 4 2 5329 5421 96970754 96970844 3.310000e-28 137
31 TraesCS4D01G089000 chrUn 77.473 182 33 6 4889 5067 289822218 289822394 1.210000e-17 102
32 TraesCS4D01G089000 chr7B 77.401 177 33 5 4893 5067 718432697 718432526 1.560000e-16 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G089000 chr4D 64541625 64548434 6809 True 12576.0 12576 100.0000 1 6810 1 chr4D.!!$R2 6809
1 TraesCS4D01G089000 chr4B 95072840 95079451 6611 True 2127.6 4050 94.1168 15 6810 5 chr4B.!!$R2 6795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
718 726 0.178926 TTTGTACTCCCTCCGTCCCA 60.179 55.0 0.00 0.0 0.00 4.37 F
1912 1920 0.312102 GAACTGTGGAAGCAAGTGCC 59.688 55.0 0.00 0.0 43.38 5.01 F
2392 2406 0.398696 ACACGTTAATCCTGTGCCCA 59.601 50.0 0.00 0.0 37.11 5.36 F
2797 2811 0.875059 AGCGGCCGAGAAAAGAAAAG 59.125 50.0 33.48 0.0 0.00 2.27 F
4434 4448 0.322098 TCCAACCAAGCCGTATGTGG 60.322 55.0 0.00 0.0 38.46 4.17 F
4864 4880 0.384309 TACTAATGGACCGCGCTCTG 59.616 55.0 5.56 0.0 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2308 2316 0.541863 CCTCGCAGGACCCTGTAATT 59.458 55.000 16.61 0.0 45.24 1.40 R
3378 3392 2.159338 CCCACCATTCAAGCAAAGATCG 60.159 50.000 0.00 0.0 0.00 3.69 R
4174 4188 0.468648 GTACATGCCTGGTCCCCTAC 59.531 60.000 0.00 0.0 0.00 3.18 R
4561 4575 1.335810 TCGACACACTAGCGAAACTGT 59.664 47.619 0.00 0.0 0.00 3.55 R
5404 5421 0.338814 AAGTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.0 0.00 4.00 R
6509 6531 0.171455 GCGACTGATGAAGACCTCGT 59.829 55.000 0.00 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.921307 TGGTTACTATAATATATCATGCCGCG 59.079 38.462 0.00 0.00 0.00 6.46
48 49 5.287274 CCGCGTGAAGCTTATGATAGATTAG 59.713 44.000 4.92 0.00 45.59 1.73
49 50 6.086871 CGCGTGAAGCTTATGATAGATTAGA 58.913 40.000 0.00 0.00 45.59 2.10
158 159 5.127682 TGCATATATCAGCGTCTATCCATGT 59.872 40.000 0.00 0.00 0.00 3.21
171 172 6.284459 GTCTATCCATGTAAAGTCTTCCCTG 58.716 44.000 0.00 0.00 0.00 4.45
175 176 1.742308 TGTAAAGTCTTCCCTGCCCT 58.258 50.000 0.00 0.00 0.00 5.19
192 193 0.615331 CCTGAAGCCTCCACTGCTAA 59.385 55.000 0.00 0.00 38.34 3.09
210 211 6.384305 ACTGCTAACAAACTACTCCAGGATAT 59.616 38.462 0.00 0.00 0.00 1.63
236 237 4.082190 TCCTATCTCTTTCGAACTGTGTGG 60.082 45.833 0.00 0.00 0.00 4.17
239 240 3.914312 TCTCTTTCGAACTGTGTGGATC 58.086 45.455 0.00 0.00 0.00 3.36
241 242 3.653344 TCTTTCGAACTGTGTGGATCTG 58.347 45.455 0.00 0.00 0.00 2.90
244 245 1.069978 TCGAACTGTGTGGATCTGCAA 59.930 47.619 0.00 0.00 0.00 4.08
254 255 8.213679 ACTGTGTGGATCTGCAACTATATATTT 58.786 33.333 0.00 0.00 0.00 1.40
255 256 8.978874 TGTGTGGATCTGCAACTATATATTTT 57.021 30.769 0.00 0.00 0.00 1.82
258 259 9.056005 TGTGGATCTGCAACTATATATTTTGTC 57.944 33.333 0.00 0.00 0.00 3.18
306 307 4.816385 TCAGCAGTTCTGTTAACTTCTTGG 59.184 41.667 7.22 0.00 43.32 3.61
346 347 7.946655 TCAACACTTCAACTATACACAGAAG 57.053 36.000 0.00 0.00 41.00 2.85
375 376 7.145474 ACCTTTAAACAGAGTAAGAAAGGGA 57.855 36.000 14.02 0.00 44.70 4.20
376 377 7.756614 ACCTTTAAACAGAGTAAGAAAGGGAT 58.243 34.615 14.02 0.00 44.70 3.85
401 402 4.388773 TGTGTCTCGATTTGACAAGCATAC 59.611 41.667 7.48 0.00 44.63 2.39
465 466 4.785301 TCTTCCATCTCTTAAATGCAGGG 58.215 43.478 0.00 0.00 0.00 4.45
502 503 2.052782 ACTGAAAAAGCAGTTCCGGT 57.947 45.000 0.00 0.00 46.42 5.28
536 544 0.602638 CACGTGCAGGACAGGCTAAA 60.603 55.000 14.38 0.00 37.69 1.85
580 588 3.795826 GCTTGAATGCTCATCTTCATGGC 60.796 47.826 0.00 0.00 31.83 4.40
581 589 3.292492 TGAATGCTCATCTTCATGGCT 57.708 42.857 0.00 0.00 31.16 4.75
663 671 4.143543 TCTGGTCAATGCACTTGATTGAA 58.856 39.130 12.60 0.00 45.36 2.69
697 705 2.647299 TCCAAGATAGCCTGGTTCCAAA 59.353 45.455 0.00 0.00 0.00 3.28
706 714 4.223144 AGCCTGGTTCCAAATTTTGTACT 58.777 39.130 8.26 0.00 0.00 2.73
707 715 4.280929 AGCCTGGTTCCAAATTTTGTACTC 59.719 41.667 8.26 2.40 0.00 2.59
708 716 4.560716 GCCTGGTTCCAAATTTTGTACTCC 60.561 45.833 8.26 5.88 0.00 3.85
709 717 4.021456 CCTGGTTCCAAATTTTGTACTCCC 60.021 45.833 8.26 2.13 0.00 4.30
710 718 4.810345 TGGTTCCAAATTTTGTACTCCCT 58.190 39.130 8.26 0.00 0.00 4.20
711 719 4.830600 TGGTTCCAAATTTTGTACTCCCTC 59.169 41.667 8.26 0.00 0.00 4.30
712 720 4.219944 GGTTCCAAATTTTGTACTCCCTCC 59.780 45.833 8.26 0.00 0.00 4.30
713 721 3.681593 TCCAAATTTTGTACTCCCTCCG 58.318 45.455 8.26 0.00 0.00 4.63
714 722 3.073356 TCCAAATTTTGTACTCCCTCCGT 59.927 43.478 8.26 0.00 0.00 4.69
715 723 3.439129 CCAAATTTTGTACTCCCTCCGTC 59.561 47.826 8.26 0.00 0.00 4.79
716 724 3.345508 AATTTTGTACTCCCTCCGTCC 57.654 47.619 0.00 0.00 0.00 4.79
717 725 0.978907 TTTTGTACTCCCTCCGTCCC 59.021 55.000 0.00 0.00 0.00 4.46
718 726 0.178926 TTTGTACTCCCTCCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
719 727 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
720 728 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
721 729 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
722 730 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
723 731 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
724 732 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
725 733 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
726 734 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
727 735 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
728 736 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
729 737 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
730 738 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
731 739 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
732 740 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
733 741 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
734 742 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
735 743 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
736 744 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
737 745 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
738 746 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
739 747 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
740 748 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
741 749 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
742 750 8.443937 CCAAAATAAGTGTCTTGAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
743 751 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
744 752 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
745 753 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
746 754 9.726438 AATAAGTGTCTTGAGCTTAGTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
747 755 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
748 756 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
749 757 7.865707 AGTGTCTTGAGCTTAGTACAAATTTG 58.134 34.615 16.67 16.67 0.00 2.32
750 758 7.499232 AGTGTCTTGAGCTTAGTACAAATTTGT 59.501 33.333 25.99 25.99 44.86 2.83
751 759 8.770828 GTGTCTTGAGCTTAGTACAAATTTGTA 58.229 33.333 23.91 23.91 42.35 2.41
775 783 7.148355 ACTAGAGCTAGTACAAAGTTGAGAC 57.852 40.000 8.35 0.00 43.98 3.36
776 784 5.394224 AGAGCTAGTACAAAGTTGAGACC 57.606 43.478 0.00 0.00 0.00 3.85
777 785 4.221041 AGAGCTAGTACAAAGTTGAGACCC 59.779 45.833 0.00 0.00 0.00 4.46
778 786 4.161102 AGCTAGTACAAAGTTGAGACCCT 58.839 43.478 0.00 0.00 0.00 4.34
779 787 4.593634 AGCTAGTACAAAGTTGAGACCCTT 59.406 41.667 0.00 0.00 0.00 3.95
780 788 5.778750 AGCTAGTACAAAGTTGAGACCCTTA 59.221 40.000 0.00 0.00 0.00 2.69
781 789 6.440965 AGCTAGTACAAAGTTGAGACCCTTAT 59.559 38.462 0.00 0.00 0.00 1.73
782 790 7.038231 AGCTAGTACAAAGTTGAGACCCTTATT 60.038 37.037 0.00 0.00 0.00 1.40
783 791 7.606839 GCTAGTACAAAGTTGAGACCCTTATTT 59.393 37.037 0.00 0.00 0.00 1.40
784 792 9.503399 CTAGTACAAAGTTGAGACCCTTATTTT 57.497 33.333 0.00 0.00 0.00 1.82
785 793 8.166422 AGTACAAAGTTGAGACCCTTATTTTG 57.834 34.615 0.00 0.00 0.00 2.44
786 794 6.405278 ACAAAGTTGAGACCCTTATTTTGG 57.595 37.500 0.00 0.00 0.00 3.28
795 803 2.052782 CCTTATTTTGGGACGGAGGG 57.947 55.000 0.00 0.00 0.00 4.30
796 804 1.562475 CCTTATTTTGGGACGGAGGGA 59.438 52.381 0.00 0.00 0.00 4.20
797 805 2.421529 CCTTATTTTGGGACGGAGGGAG 60.422 54.545 0.00 0.00 0.00 4.30
798 806 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
799 807 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
800 808 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
801 809 1.252904 TTTGGGACGGAGGGAGTACG 61.253 60.000 0.00 0.00 0.00 3.67
963 971 5.877012 TGACTTCTCCATGCTACAATTCTTC 59.123 40.000 0.00 0.00 0.00 2.87
1048 1056 3.648507 ATGCTGGAAGAGAGAAAGCAT 57.351 42.857 2.73 2.73 46.61 3.79
1110 1118 7.954788 AGATTCCTCTTATGAGCGAATAAAC 57.045 36.000 15.80 8.86 38.78 2.01
1130 1138 2.731571 GCCAGGGTGTATCTCGGCA 61.732 63.158 0.00 0.00 39.38 5.69
1162 1170 9.442047 ACAAGGTAGATATGTCTTTTCAGAAAG 57.558 33.333 0.00 0.00 42.92 2.62
1196 1204 5.880901 AGTTACAGAACACCCAAAGATCAT 58.119 37.500 0.00 0.00 38.10 2.45
1379 1387 6.914215 CACAATACTTGATAATCACATGGTGC 59.086 38.462 0.00 0.00 32.98 5.01
1444 1452 6.148948 TGCACTTTCGGAACTAAATTGAATG 58.851 36.000 0.00 0.00 27.86 2.67
1548 1556 3.673809 CCTTGAAAGTAGCTCGTACACAC 59.326 47.826 0.00 0.00 33.55 3.82
1634 1642 4.451096 TCCAGAAATAACTGTCGCTCAAAC 59.549 41.667 0.00 0.00 36.30 2.93
1639 1647 2.736144 AACTGTCGCTCAAACGGATA 57.264 45.000 0.00 0.00 0.00 2.59
1641 1649 4.380841 AACTGTCGCTCAAACGGATATA 57.619 40.909 0.00 0.00 0.00 0.86
1642 1650 4.585955 ACTGTCGCTCAAACGGATATAT 57.414 40.909 0.00 0.00 0.00 0.86
1643 1651 4.547532 ACTGTCGCTCAAACGGATATATC 58.452 43.478 3.96 3.96 0.00 1.63
1644 1652 4.278669 ACTGTCGCTCAAACGGATATATCT 59.721 41.667 12.42 0.00 0.00 1.98
1645 1653 5.472478 ACTGTCGCTCAAACGGATATATCTA 59.528 40.000 12.42 0.00 0.00 1.98
1646 1654 5.939457 TGTCGCTCAAACGGATATATCTAG 58.061 41.667 12.42 9.38 0.00 2.43
1766 1774 6.142818 TGTTTGTGGCATAAATACCATAGC 57.857 37.500 12.62 0.00 38.46 2.97
1845 1853 4.292186 AGGTGTCAGCAACAGTCATAAT 57.708 40.909 4.59 0.00 38.97 1.28
1851 1859 6.744537 GTGTCAGCAACAGTCATAATCAAATC 59.255 38.462 0.00 0.00 38.97 2.17
1875 1883 8.752766 TCGAAGTACAAACCTAAATAAGTGAG 57.247 34.615 0.00 0.00 0.00 3.51
1880 1888 6.759497 ACAAACCTAAATAAGTGAGCATCC 57.241 37.500 0.00 0.00 0.00 3.51
1912 1920 0.312102 GAACTGTGGAAGCAAGTGCC 59.688 55.000 0.00 0.00 43.38 5.01
2006 2014 4.954202 ACTGTGGGTCGACTGAATAGAATA 59.046 41.667 16.46 0.00 0.00 1.75
2007 2015 5.421056 ACTGTGGGTCGACTGAATAGAATAA 59.579 40.000 16.46 0.00 0.00 1.40
2096 2104 1.134159 TCCTAGCTAGTCGACCACTCC 60.134 57.143 19.31 0.00 36.43 3.85
2293 2301 9.247126 CATGTAAATCAAAATCACACAAGTTCA 57.753 29.630 0.00 0.00 0.00 3.18
2308 2316 5.437289 CAAGTTCATTTCTTGTGCAGGTA 57.563 39.130 0.00 0.00 37.90 3.08
2335 2343 1.078848 GTCCTGCGAGGCACTTGAT 60.079 57.895 0.00 0.00 44.22 2.57
2375 2383 3.254657 CCGCTTTCCTTTGGATTACAACA 59.745 43.478 0.00 0.00 39.19 3.33
2385 2393 6.150474 CCTTTGGATTACAACACGTTAATCCT 59.850 38.462 25.97 0.00 44.95 3.24
2392 2406 0.398696 ACACGTTAATCCTGTGCCCA 59.601 50.000 0.00 0.00 37.11 5.36
2439 2453 8.806146 AGATGAACAAGTGGCATTTAAACTTAT 58.194 29.630 0.00 0.00 32.96 1.73
2659 2673 2.203480 GCCAAAGAGGTGGGCACA 60.203 61.111 0.00 0.00 46.92 4.57
2661 2675 1.604593 CCAAAGAGGTGGGCACAGG 60.605 63.158 0.00 0.00 34.77 4.00
2749 2763 8.637986 AGTTGATTCAAGTAAACAAGGCATTTA 58.362 29.630 4.90 0.00 31.29 1.40
2782 2796 0.883833 AAGTTCTTGCCATTCAGCGG 59.116 50.000 0.00 0.00 34.65 5.52
2797 2811 0.875059 AGCGGCCGAGAAAAGAAAAG 59.125 50.000 33.48 0.00 0.00 2.27
2830 2844 4.095483 CACTAGAAACATGATTGGTCTGGC 59.905 45.833 0.00 0.00 0.00 4.85
2831 2845 3.159213 AGAAACATGATTGGTCTGGCA 57.841 42.857 0.00 0.00 0.00 4.92
2835 2849 2.165167 ACATGATTGGTCTGGCAAGTG 58.835 47.619 0.00 0.00 0.00 3.16
2844 2858 2.417515 GGTCTGGCAAGTGAGCTAGTAC 60.418 54.545 0.00 0.00 42.89 2.73
2875 2889 2.030540 TGTTCTGTGTCGTGCTACCTAC 60.031 50.000 0.00 0.00 0.00 3.18
2876 2890 1.900245 TCTGTGTCGTGCTACCTACA 58.100 50.000 0.00 0.00 0.00 2.74
2887 2901 7.064134 TGTCGTGCTACCTACATTTAGAAAATG 59.936 37.037 10.12 10.12 0.00 2.32
3029 3043 7.241042 TCACACTAAGCTATACAGGTTTTCT 57.759 36.000 0.00 0.00 42.40 2.52
3102 3116 7.606349 TGATCCGAGATGGTATCATTTTAGAG 58.394 38.462 0.00 0.00 39.52 2.43
3226 3240 9.153721 TGAAGCTTTTATGAAATTGCTTATTGG 57.846 29.630 0.00 0.00 39.17 3.16
3227 3241 9.154847 GAAGCTTTTATGAAATTGCTTATTGGT 57.845 29.630 0.00 0.00 39.17 3.67
3228 3242 9.506018 AAGCTTTTATGAAATTGCTTATTGGTT 57.494 25.926 7.43 0.00 38.14 3.67
3236 3250 8.984891 TGAAATTGCTTATTGGTTATCACTTG 57.015 30.769 0.00 0.00 0.00 3.16
3237 3251 8.801299 TGAAATTGCTTATTGGTTATCACTTGA 58.199 29.630 0.00 0.00 0.00 3.02
3238 3252 9.638239 GAAATTGCTTATTGGTTATCACTTGAA 57.362 29.630 0.00 0.00 0.00 2.69
3239 3253 9.643693 AAATTGCTTATTGGTTATCACTTGAAG 57.356 29.630 0.00 0.00 0.00 3.02
3240 3254 7.759489 TTGCTTATTGGTTATCACTTGAAGT 57.241 32.000 0.00 0.00 0.00 3.01
3253 3267 4.487714 ACTTGAAGTGAAGGTTGAGTGA 57.512 40.909 0.00 0.00 0.00 3.41
3254 3268 5.041191 ACTTGAAGTGAAGGTTGAGTGAT 57.959 39.130 0.00 0.00 0.00 3.06
3255 3269 4.818546 ACTTGAAGTGAAGGTTGAGTGATG 59.181 41.667 0.00 0.00 0.00 3.07
3256 3270 4.422073 TGAAGTGAAGGTTGAGTGATGT 57.578 40.909 0.00 0.00 0.00 3.06
3257 3271 4.780815 TGAAGTGAAGGTTGAGTGATGTT 58.219 39.130 0.00 0.00 0.00 2.71
3258 3272 5.924356 TGAAGTGAAGGTTGAGTGATGTTA 58.076 37.500 0.00 0.00 0.00 2.41
3299 3313 9.206870 GAAAGATAAGGAAATTGCAATGAAACA 57.793 29.630 13.82 0.00 0.00 2.83
3341 3355 2.185004 ATCCCAACAAGTTGAGGTCG 57.815 50.000 10.54 0.15 42.93 4.79
3378 3392 7.401484 TCAAAAGTGACAAAACTGTTGAAAC 57.599 32.000 7.35 0.00 46.60 2.78
3418 3432 8.499288 TGGTGGGTATCTATATTGTACAATGA 57.501 34.615 27.62 17.94 32.50 2.57
3441 3455 8.547967 TGATGTTTCCTTGTACTAATTCTGTC 57.452 34.615 0.00 0.00 0.00 3.51
3445 3459 6.985188 TTCCTTGTACTAATTCTGTCATGC 57.015 37.500 0.00 0.00 0.00 4.06
3516 3530 3.517901 TCCCACCTGTAATGAAGGTACAG 59.482 47.826 4.89 4.89 46.58 2.74
3551 3565 5.814188 TCTGTTGCATAGATCTGCTAACTTG 59.186 40.000 5.18 7.23 42.75 3.16
3554 3568 6.092670 TGTTGCATAGATCTGCTAACTTGAAC 59.907 38.462 5.18 1.86 42.75 3.18
3615 3629 5.931146 GCATCAGGTCATATCTGTAGAAAGG 59.069 44.000 0.00 0.00 34.15 3.11
3651 3665 5.391310 GCTGTATTCCATAGATGCAAATCCG 60.391 44.000 0.00 0.00 0.00 4.18
3657 3671 4.952957 TCCATAGATGCAAATCCGGAAAAA 59.047 37.500 9.01 0.00 0.00 1.94
3670 3684 3.756434 TCCGGAAAAATCATGGTGAGTTC 59.244 43.478 0.00 0.00 33.14 3.01
3679 3693 2.101415 TCATGGTGAGTTCATAGGCTCG 59.899 50.000 0.00 0.00 34.67 5.03
3683 3697 2.950309 GGTGAGTTCATAGGCTCGTAGA 59.050 50.000 0.00 0.00 34.67 2.59
3689 3703 6.320418 TGAGTTCATAGGCTCGTAGAATTACA 59.680 38.462 0.00 0.00 34.09 2.41
3692 3706 5.382616 TCATAGGCTCGTAGAATTACAGGA 58.617 41.667 0.00 0.00 34.09 3.86
3698 3712 5.452077 GGCTCGTAGAATTACAGGACATTCT 60.452 44.000 0.00 0.00 41.62 2.40
3738 3752 2.322658 TCAAGGGAGTACTTTGGACGT 58.677 47.619 0.00 0.00 0.00 4.34
3751 3765 6.963049 ACTTTGGACGTGATTATTCTGTAC 57.037 37.500 0.00 0.00 0.00 2.90
3806 3820 2.777692 AGGTCATTCCGGTGGATATGTT 59.222 45.455 0.00 0.00 41.99 2.71
3954 3968 1.671845 GCCAAAGTTTGTACGGACACA 59.328 47.619 14.36 0.00 34.48 3.72
4015 4029 6.838382 ACTGACTTTAACACTTGGGACTTAT 58.162 36.000 0.00 0.00 0.00 1.73
4016 4030 7.287810 ACTGACTTTAACACTTGGGACTTATT 58.712 34.615 0.00 0.00 0.00 1.40
4091 4105 3.194062 GTTTTGTGTGGGTTTGATGTGG 58.806 45.455 0.00 0.00 0.00 4.17
4099 4113 2.282816 TTTGATGTGGGCCGTGGG 60.283 61.111 0.00 0.00 0.00 4.61
4145 4159 8.569641 ACTAATAGCGTCTTCTCTATTTACTGG 58.430 37.037 0.00 0.00 36.95 4.00
4161 4175 1.229951 TGGCAGAGATGGAGGGGTT 60.230 57.895 0.00 0.00 0.00 4.11
4167 4181 3.495806 GCAGAGATGGAGGGGTTCAATAG 60.496 52.174 0.00 0.00 0.00 1.73
4174 4188 5.116084 TGGAGGGGTTCAATAGAAATCTG 57.884 43.478 0.00 0.00 35.08 2.90
4181 4195 5.132144 GGGTTCAATAGAAATCTGTAGGGGA 59.868 44.000 0.00 0.00 35.08 4.81
4185 4199 8.117360 GTTCAATAGAAATCTGTAGGGGACCAG 61.117 44.444 0.00 0.00 44.13 4.00
4197 4211 0.328258 GGGACCAGGCATGTACACTT 59.672 55.000 0.00 0.00 0.00 3.16
4272 4286 8.932434 AGATCTCATCTCTATAACTGCAGTTA 57.068 34.615 34.82 34.82 38.85 2.24
4434 4448 0.322098 TCCAACCAAGCCGTATGTGG 60.322 55.000 0.00 0.00 38.46 4.17
4624 4638 5.418840 TCTGAGTTTCTTCCTTTTTGTTGCT 59.581 36.000 0.00 0.00 0.00 3.91
4645 4659 4.271049 GCTAATTAACATCTTGCTGCTCGA 59.729 41.667 0.00 0.00 0.00 4.04
4659 4673 2.939103 CTGCTCGAATACCTTTTCCCTG 59.061 50.000 0.00 0.00 0.00 4.45
4664 4678 5.105567 TCGAATACCTTTTCCCTGCAATA 57.894 39.130 0.00 0.00 0.00 1.90
4679 4693 6.069905 TCCCTGCAATACCTTTACTGATGTTA 60.070 38.462 0.00 0.00 0.00 2.41
4758 4772 6.213677 CCATTCAGATAATGTGAAATGCCTG 58.786 40.000 0.00 0.00 37.46 4.85
4788 4802 2.032054 CACACGTGATGATGGGCAATAC 59.968 50.000 25.01 0.00 0.00 1.89
4841 4857 6.403855 GCCAAGGTATGCTACGTTAATTCAAA 60.404 38.462 0.00 0.00 35.27 2.69
4864 4880 0.384309 TACTAATGGACCGCGCTCTG 59.616 55.000 5.56 0.00 0.00 3.35
5158 5174 7.346960 AGGGAAAGCCAATATATTTTGCCTAAA 59.653 33.333 15.31 0.00 45.64 1.85
5171 5187 4.919774 TTGCCTAAACCCACTCTGATTA 57.080 40.909 0.00 0.00 0.00 1.75
5258 5275 4.000988 AGTGCTATAACCCGAAACACAAG 58.999 43.478 0.00 0.00 0.00 3.16
5336 5353 7.220030 GGTATCTGAAGTTGGTCATCATACAT 58.780 38.462 0.00 0.00 31.08 2.29
5337 5354 8.367911 GGTATCTGAAGTTGGTCATCATACATA 58.632 37.037 0.00 0.00 31.08 2.29
5338 5355 9.197694 GTATCTGAAGTTGGTCATCATACATAC 57.802 37.037 0.00 0.00 30.48 2.39
5339 5356 7.423844 TCTGAAGTTGGTCATCATACATACT 57.576 36.000 0.00 0.00 0.00 2.12
5340 5357 7.492524 TCTGAAGTTGGTCATCATACATACTC 58.507 38.462 0.00 0.00 0.00 2.59
5341 5358 6.582636 TGAAGTTGGTCATCATACATACTCC 58.417 40.000 0.00 0.00 0.00 3.85
5342 5359 5.552870 AGTTGGTCATCATACATACTCCC 57.447 43.478 0.00 0.00 0.00 4.30
5343 5360 5.219739 AGTTGGTCATCATACATACTCCCT 58.780 41.667 0.00 0.00 0.00 4.20
5344 5361 5.305644 AGTTGGTCATCATACATACTCCCTC 59.694 44.000 0.00 0.00 0.00 4.30
5345 5362 5.079998 TGGTCATCATACATACTCCCTCT 57.920 43.478 0.00 0.00 0.00 3.69
5346 5363 4.835056 TGGTCATCATACATACTCCCTCTG 59.165 45.833 0.00 0.00 0.00 3.35
5347 5364 4.835615 GGTCATCATACATACTCCCTCTGT 59.164 45.833 0.00 0.00 0.00 3.41
5348 5365 5.047660 GGTCATCATACATACTCCCTCTGTC 60.048 48.000 0.00 0.00 0.00 3.51
5349 5366 5.047660 GTCATCATACATACTCCCTCTGTCC 60.048 48.000 0.00 0.00 0.00 4.02
5350 5367 3.845860 TCATACATACTCCCTCTGTCCC 58.154 50.000 0.00 0.00 0.00 4.46
5351 5368 3.206639 TCATACATACTCCCTCTGTCCCA 59.793 47.826 0.00 0.00 0.00 4.37
5352 5369 2.877154 ACATACTCCCTCTGTCCCAT 57.123 50.000 0.00 0.00 0.00 4.00
5353 5370 3.993658 ACATACTCCCTCTGTCCCATA 57.006 47.619 0.00 0.00 0.00 2.74
5354 5371 4.280789 ACATACTCCCTCTGTCCCATAA 57.719 45.455 0.00 0.00 0.00 1.90
5355 5372 4.832492 ACATACTCCCTCTGTCCCATAAT 58.168 43.478 0.00 0.00 0.00 1.28
5356 5373 4.594920 ACATACTCCCTCTGTCCCATAATG 59.405 45.833 0.00 0.00 0.00 1.90
5357 5374 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
5358 5375 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
5359 5376 4.631234 ACTCCCTCTGTCCCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
5360 5377 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
5361 5378 4.890988 TCCCTCTGTCCCATAATGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
5362 5379 4.654262 TCCCTCTGTCCCATAATGTAAGAC 59.346 45.833 0.00 0.00 0.00 3.01
5363 5380 4.501571 CCCTCTGTCCCATAATGTAAGACG 60.502 50.000 0.00 0.00 0.00 4.18
5364 5381 4.099573 CCTCTGTCCCATAATGTAAGACGT 59.900 45.833 0.00 0.00 0.00 4.34
5365 5382 5.395324 CCTCTGTCCCATAATGTAAGACGTT 60.395 44.000 0.00 0.00 0.00 3.99
5366 5383 6.045072 TCTGTCCCATAATGTAAGACGTTT 57.955 37.500 0.00 0.00 0.00 3.60
5367 5384 6.469410 TCTGTCCCATAATGTAAGACGTTTT 58.531 36.000 0.00 0.00 0.00 2.43
5368 5385 6.938030 TCTGTCCCATAATGTAAGACGTTTTT 59.062 34.615 0.00 0.00 0.00 1.94
5413 5430 3.720949 CGTCTAACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
5414 5431 3.639538 CGTCTAACATTATGGGACGGAG 58.360 50.000 20.50 2.16 43.69 4.63
5415 5432 3.552273 CGTCTAACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
5416 5433 2.969950 TCTAACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
5417 5434 1.887797 AACATTATGGGACGGAGGGA 58.112 50.000 0.00 0.00 0.00 4.20
5418 5435 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
5419 5436 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
5580 5597 8.038944 TGTTTTACTACCGAAGAGCATTTCTAT 58.961 33.333 0.00 0.00 34.14 1.98
5780 5797 5.107109 TGACGATGAAGAAACAATTGGTG 57.893 39.130 10.83 0.00 0.00 4.17
5821 5838 2.962859 TCCATATGAGCTAGCTGACCA 58.037 47.619 24.99 14.84 0.00 4.02
5825 5842 2.634815 ATGAGCTAGCTGACCAATGG 57.365 50.000 24.99 0.00 0.00 3.16
5842 5859 1.988293 TGGCATCTTTTGGTTTCGGA 58.012 45.000 0.00 0.00 0.00 4.55
5944 5963 6.030228 GCAACAATTTCTTCGATAAAGGGAG 58.970 40.000 0.00 0.00 35.54 4.30
5949 5968 9.292195 ACAATTTCTTCGATAAAGGGAGTTTTA 57.708 29.630 0.00 0.00 35.54 1.52
6035 6054 3.708563 TCTTTTCCTTCCTTTTGTGCG 57.291 42.857 0.00 0.00 0.00 5.34
6072 6091 3.909995 TGATCGGACATAGGGATGGATTT 59.090 43.478 0.00 0.00 37.39 2.17
6076 6095 4.656575 TCGGACATAGGGATGGATTTGTAA 59.343 41.667 0.00 0.00 37.39 2.41
6108 6130 2.086610 ACCATGAAGGCTTTGTTGGT 57.913 45.000 18.42 18.42 43.14 3.67
6142 6164 7.646922 GCAGAGAAAATTCCACATGTTATGATC 59.353 37.037 0.00 0.00 0.00 2.92
6170 6192 8.109634 ACATGTGGAGAAATTAATTACTGTCCT 58.890 33.333 14.09 2.04 0.00 3.85
6204 6226 6.773638 AGTTCAGGCGGATATAGAAAATCAT 58.226 36.000 0.00 0.00 0.00 2.45
6205 6227 6.876257 AGTTCAGGCGGATATAGAAAATCATC 59.124 38.462 0.00 0.00 0.00 2.92
6206 6228 5.410924 TCAGGCGGATATAGAAAATCATCG 58.589 41.667 0.00 0.00 0.00 3.84
6207 6229 4.568359 CAGGCGGATATAGAAAATCATCGG 59.432 45.833 0.00 0.00 0.00 4.18
6208 6230 3.309954 GGCGGATATAGAAAATCATCGGC 59.690 47.826 0.00 0.00 40.81 5.54
6209 6231 3.932710 GCGGATATAGAAAATCATCGGCA 59.067 43.478 7.75 0.00 41.05 5.69
6210 6232 4.201724 GCGGATATAGAAAATCATCGGCAC 60.202 45.833 7.75 0.00 41.05 5.01
6211 6233 4.929211 CGGATATAGAAAATCATCGGCACA 59.071 41.667 0.00 0.00 0.00 4.57
6212 6234 5.408299 CGGATATAGAAAATCATCGGCACAA 59.592 40.000 0.00 0.00 0.00 3.33
6213 6235 6.401474 CGGATATAGAAAATCATCGGCACAAG 60.401 42.308 0.00 0.00 0.00 3.16
6214 6236 2.927553 AGAAAATCATCGGCACAAGC 57.072 45.000 0.00 0.00 41.10 4.01
6215 6237 2.161855 AGAAAATCATCGGCACAAGCA 58.838 42.857 0.00 0.00 44.61 3.91
6216 6238 2.756760 AGAAAATCATCGGCACAAGCAT 59.243 40.909 0.00 0.00 44.61 3.79
6217 6239 3.194116 AGAAAATCATCGGCACAAGCATT 59.806 39.130 0.00 0.00 44.61 3.56
6347 6369 5.128171 TCTTGGTGTAGCGGAATACTAATGT 59.872 40.000 0.00 0.00 0.00 2.71
6361 6383 7.065085 GGAATACTAATGTGCTATGCCAGTATG 59.935 40.741 0.00 0.00 0.00 2.39
6371 6393 6.873605 GTGCTATGCCAGTATGTATGTGATTA 59.126 38.462 0.00 0.00 0.00 1.75
6486 6508 2.753989 TGTCACTTGCACATTTGACG 57.246 45.000 10.12 0.00 41.11 4.35
6496 6518 0.951558 ACATTTGACGGAAGCCACAC 59.048 50.000 0.00 0.00 0.00 3.82
6509 6531 3.541996 AGCCACACGATATCATGAACA 57.458 42.857 5.67 0.00 0.00 3.18
6521 6543 3.961480 TCATGAACACGAGGTCTTCAT 57.039 42.857 0.00 0.00 35.45 2.57
6523 6545 3.258123 TCATGAACACGAGGTCTTCATCA 59.742 43.478 0.00 0.00 33.29 3.07
6524 6546 3.303881 TGAACACGAGGTCTTCATCAG 57.696 47.619 0.00 0.00 0.00 2.90
6539 6561 0.956902 ATCAGTCGCAGTTGCATGCA 60.957 50.000 18.46 18.46 46.87 3.96
6543 6565 0.522705 GTCGCAGTTGCATGCATGAG 60.523 55.000 30.64 19.13 46.87 2.90
6554 6576 4.919653 GCATGAGCACTTCGAGGA 57.080 55.556 0.00 0.00 41.58 3.71
6555 6577 2.378028 GCATGAGCACTTCGAGGAC 58.622 57.895 0.00 0.00 41.58 3.85
6556 6578 0.390340 GCATGAGCACTTCGAGGACA 60.390 55.000 0.00 0.00 41.58 4.02
6557 6579 1.941209 GCATGAGCACTTCGAGGACAA 60.941 52.381 0.00 0.00 41.58 3.18
6558 6580 2.625737 CATGAGCACTTCGAGGACAAT 58.374 47.619 0.00 0.00 0.00 2.71
6559 6581 2.084610 TGAGCACTTCGAGGACAATG 57.915 50.000 0.00 0.00 0.00 2.82
6592 6650 9.553064 CTTGCTTATATCCAGACAGTATTTCTT 57.447 33.333 0.00 0.00 0.00 2.52
6595 6653 7.442364 GCTTATATCCAGACAGTATTTCTTGCA 59.558 37.037 0.00 0.00 0.00 4.08
6602 6660 7.023575 CCAGACAGTATTTCTTGCATAAACAC 58.976 38.462 0.00 0.00 0.00 3.32
6617 6675 8.334016 TGCATAAACACGATAAAAATGCATAC 57.666 30.769 0.00 0.00 42.22 2.39
6662 6720 6.817765 ACAAAGGAATCTTATCGCTTTTCA 57.182 33.333 0.00 0.00 32.01 2.69
6708 6766 9.865321 CAGTCAAAGATGTGATTTATTTGGAAT 57.135 29.630 0.00 0.00 32.91 3.01
6717 6775 6.884295 TGTGATTTATTTGGAATTCGGAGTCT 59.116 34.615 0.00 0.00 0.00 3.24
6785 6848 5.357742 TCTTTGCTGATATCCAAGCAGTA 57.642 39.130 15.12 8.82 38.57 2.74
6788 6851 6.261603 TCTTTGCTGATATCCAAGCAGTATTG 59.738 38.462 15.12 7.63 38.57 1.90
6801 6864 3.587923 GCAGTATTGCCATTTGAAAGCA 58.412 40.909 0.00 0.00 44.74 3.91
6804 6867 5.122711 GCAGTATTGCCATTTGAAAGCATTT 59.877 36.000 0.00 0.00 44.74 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.273016 GCGGCATGATATATTATAGTAACCAAT 57.727 33.333 0.00 0.00 0.00 3.16
2 3 7.436970 CGCGGCATGATATATTATAGTAACCAA 59.563 37.037 0.00 0.00 0.00 3.67
3 4 6.921307 CGCGGCATGATATATTATAGTAACCA 59.079 38.462 0.00 0.00 0.00 3.67
4 5 6.921857 ACGCGGCATGATATATTATAGTAACC 59.078 38.462 12.47 0.00 0.00 2.85
5 6 7.646526 TCACGCGGCATGATATATTATAGTAAC 59.353 37.037 12.47 0.00 0.00 2.50
6 7 7.708998 TCACGCGGCATGATATATTATAGTAA 58.291 34.615 12.47 0.00 0.00 2.24
7 8 7.266922 TCACGCGGCATGATATATTATAGTA 57.733 36.000 12.47 0.00 0.00 1.82
8 9 6.144078 TCACGCGGCATGATATATTATAGT 57.856 37.500 12.47 0.00 0.00 2.12
9 10 6.346120 GCTTCACGCGGCATGATATATTATAG 60.346 42.308 12.47 0.00 0.00 1.31
10 11 5.462068 GCTTCACGCGGCATGATATATTATA 59.538 40.000 12.47 0.00 0.00 0.98
11 12 4.271049 GCTTCACGCGGCATGATATATTAT 59.729 41.667 12.47 0.00 0.00 1.28
12 13 3.616821 GCTTCACGCGGCATGATATATTA 59.383 43.478 12.47 0.00 0.00 0.98
13 14 2.416547 GCTTCACGCGGCATGATATATT 59.583 45.455 12.47 0.00 0.00 1.28
48 49 4.570369 GCTTAAGAGTCTTTGCCTCTGATC 59.430 45.833 11.40 0.00 39.22 2.92
49 50 4.224818 AGCTTAAGAGTCTTTGCCTCTGAT 59.775 41.667 11.40 0.00 39.22 2.90
55 56 8.614469 ATTATGATAGCTTAAGAGTCTTTGCC 57.386 34.615 11.40 4.89 0.00 4.52
158 159 2.038863 TCAGGGCAGGGAAGACTTTA 57.961 50.000 0.00 0.00 0.00 1.85
171 172 2.045536 CAGTGGAGGCTTCAGGGC 60.046 66.667 0.00 0.00 41.20 5.19
175 176 1.055849 TGTTAGCAGTGGAGGCTTCA 58.944 50.000 0.00 0.00 42.62 3.02
210 211 7.258441 CACACAGTTCGAAAGAGATAGGAATA 58.742 38.462 0.00 0.00 43.69 1.75
216 217 5.419155 AGATCCACACAGTTCGAAAGAGATA 59.581 40.000 0.00 0.00 43.69 1.98
226 227 2.498167 AGTTGCAGATCCACACAGTTC 58.502 47.619 0.00 0.00 0.00 3.01
236 237 9.411801 TCTCGACAAAATATATAGTTGCAGATC 57.588 33.333 0.00 0.00 0.00 2.75
306 307 7.173218 TGAAGTGTTGAAGATAGTTGGATTCAC 59.827 37.037 0.00 0.00 31.72 3.18
375 376 4.275689 TGCTTGTCAAATCGAGACACAAAT 59.724 37.500 5.55 0.00 44.95 2.32
376 377 3.625313 TGCTTGTCAAATCGAGACACAAA 59.375 39.130 5.55 0.00 44.95 2.83
440 441 5.884792 CCTGCATTTAAGAGATGGAAGAACT 59.115 40.000 0.00 0.00 0.00 3.01
445 446 4.263905 ACACCCTGCATTTAAGAGATGGAA 60.264 41.667 0.00 0.00 0.00 3.53
450 451 4.019411 TGATCACACCCTGCATTTAAGAGA 60.019 41.667 0.00 0.00 0.00 3.10
465 466 6.741992 TTCAGTCCAACAATATGATCACAC 57.258 37.500 0.00 0.00 0.00 3.82
500 501 1.499049 GTGGACTCAGAACACGAACC 58.501 55.000 0.00 0.00 0.00 3.62
580 588 5.388944 GCTTGCAGAAACTGAACTCATAAG 58.611 41.667 2.81 0.00 32.44 1.73
581 589 4.216257 GGCTTGCAGAAACTGAACTCATAA 59.784 41.667 2.81 0.00 32.44 1.90
663 671 6.060788 GGCTATCTTGGAGTTCAGATTCAAT 58.939 40.000 0.00 0.00 0.00 2.57
697 705 1.558294 GGGACGGAGGGAGTACAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
706 714 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
707 715 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
708 716 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
709 717 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
710 718 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
711 719 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
712 720 4.378459 GCTCAAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
713 721 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
714 722 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
715 723 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
716 724 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
717 725 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
718 726 9.555727 TTGTACTAAGCTCAAGACACTTATTTT 57.444 29.630 3.19 0.00 0.00 1.82
719 727 9.555727 TTTGTACTAAGCTCAAGACACTTATTT 57.444 29.630 3.19 0.00 0.00 1.40
720 728 9.726438 ATTTGTACTAAGCTCAAGACACTTATT 57.274 29.630 3.19 0.00 0.00 1.40
721 729 9.726438 AATTTGTACTAAGCTCAAGACACTTAT 57.274 29.630 3.19 0.00 0.00 1.73
722 730 9.555727 AAATTTGTACTAAGCTCAAGACACTTA 57.444 29.630 3.19 0.00 0.00 2.24
723 731 8.345565 CAAATTTGTACTAAGCTCAAGACACTT 58.654 33.333 10.15 0.00 0.00 3.16
724 732 7.499232 ACAAATTTGTACTAAGCTCAAGACACT 59.501 33.333 22.10 0.00 40.16 3.55
725 733 7.639945 ACAAATTTGTACTAAGCTCAAGACAC 58.360 34.615 22.10 2.09 40.16 3.67
726 734 7.801716 ACAAATTTGTACTAAGCTCAAGACA 57.198 32.000 22.10 0.00 40.16 3.41
750 758 7.336427 GGTCTCAACTTTGTACTAGCTCTAGTA 59.664 40.741 11.59 11.59 43.98 1.82
752 760 6.404954 GGGTCTCAACTTTGTACTAGCTCTAG 60.405 46.154 0.00 2.55 39.04 2.43
753 761 5.418209 GGGTCTCAACTTTGTACTAGCTCTA 59.582 44.000 0.00 0.00 0.00 2.43
754 762 4.221041 GGGTCTCAACTTTGTACTAGCTCT 59.779 45.833 0.00 0.00 0.00 4.09
755 763 4.221041 AGGGTCTCAACTTTGTACTAGCTC 59.779 45.833 0.00 0.00 0.00 4.09
756 764 4.161102 AGGGTCTCAACTTTGTACTAGCT 58.839 43.478 0.00 0.00 0.00 3.32
757 765 4.538746 AGGGTCTCAACTTTGTACTAGC 57.461 45.455 0.00 0.00 0.00 3.42
758 766 9.503399 AAAATAAGGGTCTCAACTTTGTACTAG 57.497 33.333 0.00 0.00 0.00 2.57
759 767 9.280174 CAAAATAAGGGTCTCAACTTTGTACTA 57.720 33.333 0.00 0.00 0.00 1.82
760 768 7.230712 CCAAAATAAGGGTCTCAACTTTGTACT 59.769 37.037 0.00 0.00 0.00 2.73
761 769 7.368059 CCAAAATAAGGGTCTCAACTTTGTAC 58.632 38.462 0.00 0.00 0.00 2.90
762 770 6.492087 CCCAAAATAAGGGTCTCAACTTTGTA 59.508 38.462 0.00 0.00 41.61 2.41
763 771 5.304357 CCCAAAATAAGGGTCTCAACTTTGT 59.696 40.000 0.00 0.00 41.61 2.83
764 772 5.538433 TCCCAAAATAAGGGTCTCAACTTTG 59.462 40.000 0.00 0.00 46.82 2.77
765 773 5.538813 GTCCCAAAATAAGGGTCTCAACTTT 59.461 40.000 0.00 0.00 46.82 2.66
766 774 5.077564 GTCCCAAAATAAGGGTCTCAACTT 58.922 41.667 0.00 0.00 46.82 2.66
767 775 4.663334 GTCCCAAAATAAGGGTCTCAACT 58.337 43.478 0.00 0.00 46.82 3.16
768 776 3.439129 CGTCCCAAAATAAGGGTCTCAAC 59.561 47.826 0.00 0.00 46.82 3.18
769 777 3.560453 CCGTCCCAAAATAAGGGTCTCAA 60.560 47.826 0.00 0.00 46.82 3.02
770 778 2.026636 CCGTCCCAAAATAAGGGTCTCA 60.027 50.000 0.00 0.00 46.82 3.27
771 779 2.237893 TCCGTCCCAAAATAAGGGTCTC 59.762 50.000 0.00 0.00 46.82 3.36
772 780 2.238898 CTCCGTCCCAAAATAAGGGTCT 59.761 50.000 0.00 0.00 46.82 3.85
773 781 2.640184 CTCCGTCCCAAAATAAGGGTC 58.360 52.381 0.00 0.00 46.82 4.46
774 782 1.283905 CCTCCGTCCCAAAATAAGGGT 59.716 52.381 0.00 0.00 46.82 4.34
776 784 1.562475 TCCCTCCGTCCCAAAATAAGG 59.438 52.381 0.00 0.00 0.00 2.69
777 785 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
778 786 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
779 787 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
780 788 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
781 789 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
782 790 1.252904 CGTACTCCCTCCGTCCCAAA 61.253 60.000 0.00 0.00 0.00 3.28
783 791 1.679977 CGTACTCCCTCCGTCCCAA 60.680 63.158 0.00 0.00 0.00 4.12
784 792 1.561769 TACGTACTCCCTCCGTCCCA 61.562 60.000 0.00 0.00 36.12 4.37
785 793 1.098129 GTACGTACTCCCTCCGTCCC 61.098 65.000 18.47 0.00 36.12 4.46
786 794 0.107459 AGTACGTACTCCCTCCGTCC 60.107 60.000 22.45 0.00 36.12 4.79
787 795 2.159028 ACTAGTACGTACTCCCTCCGTC 60.159 54.545 30.53 0.00 37.73 4.79
788 796 1.834263 ACTAGTACGTACTCCCTCCGT 59.166 52.381 30.53 15.70 37.73 4.69
789 797 2.611225 ACTAGTACGTACTCCCTCCG 57.389 55.000 30.53 15.13 37.73 4.63
790 798 4.013050 ACAAACTAGTACGTACTCCCTCC 58.987 47.826 30.53 0.00 37.73 4.30
791 799 4.142513 CCACAAACTAGTACGTACTCCCTC 60.143 50.000 30.53 0.54 37.73 4.30
792 800 3.760684 CCACAAACTAGTACGTACTCCCT 59.239 47.826 30.53 13.64 37.73 4.20
793 801 3.507622 ACCACAAACTAGTACGTACTCCC 59.492 47.826 30.53 1.76 37.73 4.30
794 802 4.457257 AGACCACAAACTAGTACGTACTCC 59.543 45.833 30.53 2.17 37.73 3.85
795 803 5.388944 CAGACCACAAACTAGTACGTACTC 58.611 45.833 30.53 13.02 37.73 2.59
796 804 4.217118 CCAGACCACAAACTAGTACGTACT 59.783 45.833 29.62 29.62 40.24 2.73
797 805 4.216257 TCCAGACCACAAACTAGTACGTAC 59.784 45.833 18.10 18.10 0.00 3.67
798 806 4.397420 TCCAGACCACAAACTAGTACGTA 58.603 43.478 0.00 0.00 0.00 3.57
799 807 3.225104 TCCAGACCACAAACTAGTACGT 58.775 45.455 0.00 0.00 0.00 3.57
800 808 3.928727 TCCAGACCACAAACTAGTACG 57.071 47.619 0.00 0.00 0.00 3.67
801 809 6.567891 GCAAATTCCAGACCACAAACTAGTAC 60.568 42.308 0.00 0.00 0.00 2.73
963 971 8.853126 ACCCAATCAATTACATGATACATTCTG 58.147 33.333 0.00 0.00 39.08 3.02
1048 1056 3.932545 ACTTGCGCATGGTAAATTTGA 57.067 38.095 24.99 0.00 0.00 2.69
1092 1100 4.811024 TGGCTGTTTATTCGCTCATAAGAG 59.189 41.667 0.00 0.00 44.96 2.85
1110 1118 1.443407 CCGAGATACACCCTGGCTG 59.557 63.158 0.00 0.00 0.00 4.85
1167 1175 7.114095 TCTTTGGGTGTTCTGTAACTAACTTT 58.886 34.615 0.00 0.00 36.51 2.66
1174 1182 7.606456 TCTTATGATCTTTGGGTGTTCTGTAAC 59.394 37.037 0.00 0.00 36.07 2.50
1196 1204 7.977789 TTTGTTTCATACACTGCTCATCTTA 57.022 32.000 0.00 0.00 36.21 2.10
1413 1421 2.119457 GTTCCGAAAGTGCAAAGCTTG 58.881 47.619 0.00 0.00 0.00 4.01
1444 1452 7.883217 TGATCGGAACTTCATTAGGTACTATC 58.117 38.462 0.00 0.00 42.38 2.08
1496 1504 5.670485 TGCATGGTATATATAAGCGAAGGG 58.330 41.667 0.00 0.00 0.00 3.95
1548 1556 4.895224 AGCTATGCAATGATGTTGACAG 57.105 40.909 0.00 0.00 0.00 3.51
1634 1642 7.640630 GCACTGAAATACGTCTAGATATATCCG 59.359 40.741 9.18 8.13 0.00 4.18
1639 1647 8.850007 TCTAGCACTGAAATACGTCTAGATAT 57.150 34.615 0.00 0.00 29.74 1.63
1641 1649 7.753309 ATCTAGCACTGAAATACGTCTAGAT 57.247 36.000 10.29 10.29 37.49 1.98
1642 1650 7.713942 TGTATCTAGCACTGAAATACGTCTAGA 59.286 37.037 0.00 0.00 36.50 2.43
1643 1651 7.862648 TGTATCTAGCACTGAAATACGTCTAG 58.137 38.462 0.00 0.00 0.00 2.43
1644 1652 7.797038 TGTATCTAGCACTGAAATACGTCTA 57.203 36.000 0.00 0.00 0.00 2.59
1645 1653 6.694877 TGTATCTAGCACTGAAATACGTCT 57.305 37.500 0.00 0.00 0.00 4.18
1646 1654 6.583050 GGATGTATCTAGCACTGAAATACGTC 59.417 42.308 0.00 8.28 37.78 4.34
1851 1859 7.117236 TGCTCACTTATTTAGGTTTGTACTTCG 59.883 37.037 0.00 0.00 0.00 3.79
1875 1883 2.832201 GGCCCAAGCTGAGGATGC 60.832 66.667 6.47 2.82 39.73 3.91
1912 1920 6.884836 AGCTTATTTAACCAGGGTTCACTTAG 59.115 38.462 7.04 3.11 39.31 2.18
2007 2015 8.749354 CCCAAAGTATCTACTTAGGCAATTTTT 58.251 33.333 3.16 0.00 45.17 1.94
2065 2073 5.041940 CGACTAGCTAGGACATAAAACACC 58.958 45.833 24.35 0.00 0.00 4.16
2073 2081 2.092321 AGTGGTCGACTAGCTAGGACAT 60.092 50.000 24.35 3.34 30.86 3.06
2126 2134 8.362639 TCCAGAAATCTTCTCAAAATTCAAAGG 58.637 33.333 0.00 0.00 38.11 3.11
2141 2149 6.042437 ACTCCAGCAATTTTTCCAGAAATCTT 59.958 34.615 0.00 0.00 0.00 2.40
2215 2223 4.796231 CCTTCGACGCTGTCCCGG 62.796 72.222 0.00 0.00 0.00 5.73
2228 2236 4.394920 TGATTCCGAACATGTAAAGCCTTC 59.605 41.667 0.00 0.00 0.00 3.46
2293 2301 5.418840 CCCTGTAATTACCTGCACAAGAAAT 59.581 40.000 13.01 0.00 0.00 2.17
2308 2316 0.541863 CCTCGCAGGACCCTGTAATT 59.458 55.000 16.61 0.00 45.24 1.40
2335 2343 0.895530 GGAGTTCGAGTGGATGGACA 59.104 55.000 0.00 0.00 0.00 4.02
2375 2383 0.690762 AGTGGGCACAGGATTAACGT 59.309 50.000 0.00 0.00 0.00 3.99
2385 2393 0.840617 TGTTAGGTGAAGTGGGCACA 59.159 50.000 0.00 0.00 37.99 4.57
2392 2406 7.936847 TCATCTGTGTTATTTGTTAGGTGAAGT 59.063 33.333 0.00 0.00 0.00 3.01
2439 2453 6.479006 CATGAATATATCCCTCTCTTTGGCA 58.521 40.000 0.00 0.00 0.00 4.92
2508 2522 8.383619 GTGTCATTATCACAATGAGAGTGTAAC 58.616 37.037 0.06 0.00 37.34 2.50
2659 2673 1.219773 ATGTCACCTCATGCATCCCT 58.780 50.000 0.00 0.00 0.00 4.20
2661 2675 5.581126 TTTTAATGTCACCTCATGCATCC 57.419 39.130 0.00 0.00 0.00 3.51
2749 2763 4.019174 CAAGAACTTAACCCATGGAGCAT 58.981 43.478 15.22 0.00 0.00 3.79
2782 2796 6.183360 GGATTACTACCTTTTCTTTTCTCGGC 60.183 42.308 0.00 0.00 0.00 5.54
2797 2811 9.046296 CAATCATGTTTCTAGTGGATTACTACC 57.954 37.037 0.00 0.00 40.89 3.18
2844 2858 6.417635 AGCACGACACAGAACAATTTAATTTG 59.582 34.615 8.24 8.24 0.00 2.32
2887 2901 6.868864 AGATTATGCCGACACTAACATCATAC 59.131 38.462 0.00 0.00 0.00 2.39
2997 3011 9.035607 CCTGTATAGCTTAGTGTGAAATTACAG 57.964 37.037 0.00 0.00 0.00 2.74
3005 3019 7.039293 TGAGAAAACCTGTATAGCTTAGTGTGA 60.039 37.037 0.00 0.00 0.00 3.58
3102 3116 5.627499 TCTGCAATCTTACACAAATGACC 57.373 39.130 0.00 0.00 0.00 4.02
3165 3179 8.635765 TGCCTTCTACTTGAAATTTATCTTGT 57.364 30.769 0.00 0.00 33.79 3.16
3232 3246 4.487714 TCACTCAACCTTCACTTCAAGT 57.512 40.909 0.00 0.00 0.00 3.16
3233 3247 4.818546 ACATCACTCAACCTTCACTTCAAG 59.181 41.667 0.00 0.00 0.00 3.02
3234 3248 4.780815 ACATCACTCAACCTTCACTTCAA 58.219 39.130 0.00 0.00 0.00 2.69
3235 3249 4.422073 ACATCACTCAACCTTCACTTCA 57.578 40.909 0.00 0.00 0.00 3.02
3236 3250 5.106908 GCTAACATCACTCAACCTTCACTTC 60.107 44.000 0.00 0.00 0.00 3.01
3237 3251 4.757149 GCTAACATCACTCAACCTTCACTT 59.243 41.667 0.00 0.00 0.00 3.16
3238 3252 4.040952 AGCTAACATCACTCAACCTTCACT 59.959 41.667 0.00 0.00 0.00 3.41
3239 3253 4.319177 AGCTAACATCACTCAACCTTCAC 58.681 43.478 0.00 0.00 0.00 3.18
3240 3254 4.623932 AGCTAACATCACTCAACCTTCA 57.376 40.909 0.00 0.00 0.00 3.02
3241 3255 5.948992 AAAGCTAACATCACTCAACCTTC 57.051 39.130 0.00 0.00 0.00 3.46
3242 3256 6.431234 CCTAAAAGCTAACATCACTCAACCTT 59.569 38.462 0.00 0.00 0.00 3.50
3243 3257 5.940470 CCTAAAAGCTAACATCACTCAACCT 59.060 40.000 0.00 0.00 0.00 3.50
3244 3258 5.705905 ACCTAAAAGCTAACATCACTCAACC 59.294 40.000 0.00 0.00 0.00 3.77
3245 3259 6.426937 TGACCTAAAAGCTAACATCACTCAAC 59.573 38.462 0.00 0.00 0.00 3.18
3246 3260 6.530120 TGACCTAAAAGCTAACATCACTCAA 58.470 36.000 0.00 0.00 0.00 3.02
3247 3261 6.109156 TGACCTAAAAGCTAACATCACTCA 57.891 37.500 0.00 0.00 0.00 3.41
3248 3262 6.091441 CACTGACCTAAAAGCTAACATCACTC 59.909 42.308 0.00 0.00 0.00 3.51
3249 3263 5.934625 CACTGACCTAAAAGCTAACATCACT 59.065 40.000 0.00 0.00 0.00 3.41
3250 3264 5.932303 TCACTGACCTAAAAGCTAACATCAC 59.068 40.000 0.00 0.00 0.00 3.06
3251 3265 6.109156 TCACTGACCTAAAAGCTAACATCA 57.891 37.500 0.00 0.00 0.00 3.07
3252 3266 7.387948 TCTTTCACTGACCTAAAAGCTAACATC 59.612 37.037 0.00 0.00 0.00 3.06
3253 3267 7.224297 TCTTTCACTGACCTAAAAGCTAACAT 58.776 34.615 0.00 0.00 0.00 2.71
3254 3268 6.588204 TCTTTCACTGACCTAAAAGCTAACA 58.412 36.000 0.00 0.00 0.00 2.41
3255 3269 7.674471 ATCTTTCACTGACCTAAAAGCTAAC 57.326 36.000 0.00 0.00 0.00 2.34
3256 3270 9.436957 CTTATCTTTCACTGACCTAAAAGCTAA 57.563 33.333 0.00 0.00 0.00 3.09
3257 3271 8.041323 CCTTATCTTTCACTGACCTAAAAGCTA 58.959 37.037 0.00 0.00 0.00 3.32
3258 3272 6.881602 CCTTATCTTTCACTGACCTAAAAGCT 59.118 38.462 0.00 0.00 0.00 3.74
3311 3325 7.826690 TCAACTTGTTGGGATAAGAAATAAGC 58.173 34.615 12.75 0.00 0.00 3.09
3319 3333 3.684788 CGACCTCAACTTGTTGGGATAAG 59.315 47.826 14.29 4.03 0.00 1.73
3353 3367 7.501515 GTTTCAACAGTTTTGTCACTTTTGAG 58.498 34.615 3.42 0.00 41.95 3.02
3355 3369 6.143118 TCGTTTCAACAGTTTTGTCACTTTTG 59.857 34.615 0.00 0.00 36.27 2.44
3378 3392 2.159338 CCCACCATTCAAGCAAAGATCG 60.159 50.000 0.00 0.00 0.00 3.69
3418 3432 8.950210 CATGACAGAATTAGTACAAGGAAACAT 58.050 33.333 0.00 0.00 0.00 2.71
3427 3441 8.565896 AGAAAATGCATGACAGAATTAGTACA 57.434 30.769 0.00 0.00 0.00 2.90
3428 3442 9.846248 AAAGAAAATGCATGACAGAATTAGTAC 57.154 29.630 0.00 0.00 0.00 2.73
3441 3455 5.929992 AGATCACCACAAAAGAAAATGCATG 59.070 36.000 0.00 0.00 0.00 4.06
3516 3530 8.457261 AGATCTATGCAACAGAAAATTGAACTC 58.543 33.333 5.57 0.00 0.00 3.01
3551 3565 5.687285 TGTAAACCTTAGAGAAACGACGTTC 59.313 40.000 14.58 7.78 0.00 3.95
3554 3568 4.977963 TGTGTAAACCTTAGAGAAACGACG 59.022 41.667 0.00 0.00 0.00 5.12
3651 3665 6.681368 GCCTATGAACTCACCATGATTTTTCC 60.681 42.308 0.00 0.00 0.00 3.13
3657 3671 3.244009 CGAGCCTATGAACTCACCATGAT 60.244 47.826 0.00 0.00 32.98 2.45
3670 3684 5.009710 TGTCCTGTAATTCTACGAGCCTATG 59.990 44.000 0.00 0.00 0.00 2.23
3723 3737 6.255887 CAGAATAATCACGTCCAAAGTACTCC 59.744 42.308 0.00 0.00 0.00 3.85
3768 3782 9.014297 GGAATGACCTATTATAATCCTGTTTGG 57.986 37.037 0.00 0.00 35.41 3.28
3769 3783 8.721478 CGGAATGACCTATTATAATCCTGTTTG 58.279 37.037 0.00 0.00 36.31 2.93
3806 3820 5.134661 TGTGTGACATAGTCCCATATACGA 58.865 41.667 0.00 0.00 0.00 3.43
3954 3968 3.935203 CAGTAACCGAAACATGCTCATCT 59.065 43.478 0.00 0.00 0.00 2.90
4015 4029 2.429930 CTCACTTGCCGGGACCAA 59.570 61.111 2.18 0.00 0.00 3.67
4016 4030 3.636231 CCTCACTTGCCGGGACCA 61.636 66.667 2.18 0.00 0.00 4.02
4091 4105 0.826256 AAGAAGGTTTTCCCACGGCC 60.826 55.000 0.00 0.00 41.86 6.13
4099 4113 5.791336 AGTCCATTGGAAAGAAGGTTTTC 57.209 39.130 7.05 0.00 36.55 2.29
4113 4127 5.837437 AGAGAAGACGCTATTAGTCCATTG 58.163 41.667 0.00 0.00 39.31 2.82
4145 4159 0.620556 TTGAACCCCTCCATCTCTGC 59.379 55.000 0.00 0.00 0.00 4.26
4161 4175 5.285401 TGGTCCCCTACAGATTTCTATTGA 58.715 41.667 0.00 0.00 0.00 2.57
4167 4181 1.134068 GCCTGGTCCCCTACAGATTTC 60.134 57.143 0.00 0.00 36.86 2.17
4174 4188 0.468648 GTACATGCCTGGTCCCCTAC 59.531 60.000 0.00 0.00 0.00 3.18
4181 4195 2.371841 TCAGAAAGTGTACATGCCTGGT 59.628 45.455 0.00 0.00 0.00 4.00
4185 4199 4.458989 TGGAAATCAGAAAGTGTACATGCC 59.541 41.667 0.00 0.00 0.00 4.40
4197 4211 5.774690 ACTTGGCTTAACATGGAAATCAGAA 59.225 36.000 0.00 0.00 0.00 3.02
4272 4286 8.755696 TTTCGAGCAATAAATTTAATGCAGTT 57.244 26.923 30.31 16.36 40.98 3.16
4434 4448 2.808543 GTCCGCCATAGGATGATGAAAC 59.191 50.000 0.00 0.00 43.04 2.78
4559 4573 2.153247 CGACACACTAGCGAAACTGTTC 59.847 50.000 0.00 0.00 0.00 3.18
4561 4575 1.335810 TCGACACACTAGCGAAACTGT 59.664 47.619 0.00 0.00 0.00 3.55
4624 4638 6.925610 ATTCGAGCAGCAAGATGTTAATTA 57.074 33.333 0.00 0.00 0.00 1.40
4645 4659 5.206905 AGGTATTGCAGGGAAAAGGTATT 57.793 39.130 0.00 0.00 0.00 1.89
4679 4693 2.023404 AGACCCCAAACCTGAAAACCTT 60.023 45.455 0.00 0.00 0.00 3.50
4758 4772 4.201851 CCATCATCACGTGTGAAGAAATCC 60.202 45.833 16.51 0.00 43.58 3.01
4841 4857 3.510360 AGAGCGCGGTCCATTAGTATATT 59.490 43.478 32.59 8.55 0.00 1.28
4852 4868 0.952010 TTTTTACCAGAGCGCGGTCC 60.952 55.000 32.59 16.17 37.99 4.46
4892 4908 5.296780 GCAAGTCCCATATCTGATTCGAAAA 59.703 40.000 0.00 0.00 0.00 2.29
5144 5160 6.964464 TCAGAGTGGGTTTAGGCAAAATATA 58.036 36.000 0.00 0.00 0.00 0.86
5158 5174 4.780021 ACAACAGAGATAATCAGAGTGGGT 59.220 41.667 0.00 0.00 0.00 4.51
5171 5187 3.123621 GCGAAATCGACAACAACAGAGAT 59.876 43.478 7.06 0.00 43.02 2.75
5258 5275 1.142097 GGCTAGGTCTCGGTTCAGC 59.858 63.158 0.00 0.00 0.00 4.26
5388 5405 5.122711 CCGTCCCATAATGTTAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
5389 5406 4.632688 CCGTCCCATAATGTTAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
5390 5407 4.081531 TCCGTCCCATAATGTTAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
5391 5408 3.448301 TCCGTCCCATAATGTTAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
5392 5409 3.025978 TCCGTCCCATAATGTTAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
5394 5411 3.244112 CCCTCCGTCCCATAATGTTAGAC 60.244 52.174 0.00 0.00 0.00 2.59
5395 5412 2.969950 CCCTCCGTCCCATAATGTTAGA 59.030 50.000 0.00 0.00 0.00 2.10
5396 5413 2.969950 TCCCTCCGTCCCATAATGTTAG 59.030 50.000 0.00 0.00 0.00 2.34
5397 5414 2.969950 CTCCCTCCGTCCCATAATGTTA 59.030 50.000 0.00 0.00 0.00 2.41
5398 5415 1.768870 CTCCCTCCGTCCCATAATGTT 59.231 52.381 0.00 0.00 0.00 2.71
5399 5416 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
5400 5417 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
5401 5418 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
5402 5419 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
5403 5420 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
5404 5421 0.338814 AAGTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
5405 5422 1.002069 TAAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
5406 5423 1.397672 GTAAGTACTCCCTCCGTCCC 58.602 60.000 0.00 0.00 0.00 4.46
5407 5424 1.341383 TGGTAAGTACTCCCTCCGTCC 60.341 57.143 11.62 1.18 0.00 4.79
5408 5425 2.134789 TGGTAAGTACTCCCTCCGTC 57.865 55.000 11.62 0.00 0.00 4.79
5409 5426 2.454538 CTTGGTAAGTACTCCCTCCGT 58.545 52.381 11.62 0.00 0.00 4.69
5410 5427 1.755380 CCTTGGTAAGTACTCCCTCCG 59.245 57.143 11.62 2.41 0.00 4.63
5411 5428 2.765135 GTCCTTGGTAAGTACTCCCTCC 59.235 54.545 11.62 6.04 0.00 4.30
5412 5429 2.765135 GGTCCTTGGTAAGTACTCCCTC 59.235 54.545 11.62 0.00 0.00 4.30
5413 5430 2.386113 AGGTCCTTGGTAAGTACTCCCT 59.614 50.000 11.62 0.00 0.00 4.20
5414 5431 2.830293 AGGTCCTTGGTAAGTACTCCC 58.170 52.381 0.00 0.00 0.00 4.30
5415 5432 6.364568 TTTAAGGTCCTTGGTAAGTACTCC 57.635 41.667 14.84 0.00 0.00 3.85
5416 5433 8.859236 AAATTTAAGGTCCTTGGTAAGTACTC 57.141 34.615 14.84 0.00 0.00 2.59
5417 5434 7.886970 GGAAATTTAAGGTCCTTGGTAAGTACT 59.113 37.037 14.84 0.00 0.00 2.73
5418 5435 7.121759 GGGAAATTTAAGGTCCTTGGTAAGTAC 59.878 40.741 14.84 0.00 0.00 2.73
5419 5436 7.177184 GGGAAATTTAAGGTCCTTGGTAAGTA 58.823 38.462 14.84 0.00 0.00 2.24
5580 5597 4.652421 ATGAAATCATATTTGTGCGGCA 57.348 36.364 0.00 0.00 34.26 5.69
5629 5646 6.480320 GTGTGGCACAAATATAAAAACAACCA 59.520 34.615 23.90 0.00 44.16 3.67
5635 5652 9.553064 AATCAAAGTGTGGCACAAATATAAAAA 57.447 25.926 23.90 2.47 44.16 1.94
5705 5722 6.152831 TGTCCAATCACGACCCTATCATATAG 59.847 42.308 0.00 0.00 0.00 1.31
5780 5797 2.458006 CTTTCGTTGTCGCCCTTGCC 62.458 60.000 0.00 0.00 36.96 4.52
5792 5809 4.811557 GCTAGCTCATATGGAACTTTCGTT 59.188 41.667 7.70 0.00 35.68 3.85
5793 5810 4.100189 AGCTAGCTCATATGGAACTTTCGT 59.900 41.667 12.68 0.00 0.00 3.85
5800 5817 3.308401 TGGTCAGCTAGCTCATATGGAA 58.692 45.455 16.15 0.00 0.00 3.53
5813 5830 2.226962 AAAGATGCCATTGGTCAGCT 57.773 45.000 10.74 10.74 29.79 4.24
5821 5838 2.896685 TCCGAAACCAAAAGATGCCATT 59.103 40.909 0.00 0.00 0.00 3.16
5825 5842 3.363341 TGTTCCGAAACCAAAAGATGC 57.637 42.857 0.00 0.00 34.28 3.91
5842 5859 5.336690 GGCACAAACCATAGTGATCAATGTT 60.337 40.000 5.80 0.00 37.97 2.71
5919 5938 4.793216 CCCTTTATCGAAGAAATTGTTGCG 59.207 41.667 0.00 0.00 43.58 4.85
5974 5993 4.594970 TCACTGGAGAAAACAAGGAAACA 58.405 39.130 0.00 0.00 0.00 2.83
6035 6054 5.594725 TGTCCGATCATAATCCTATAGCCTC 59.405 44.000 0.00 0.00 0.00 4.70
6072 6091 7.777910 CCTTCATGGTTAACCTCCATAATTACA 59.222 37.037 24.78 0.73 42.92 2.41
6076 6095 5.103515 AGCCTTCATGGTTAACCTCCATAAT 60.104 40.000 24.78 6.63 42.92 1.28
6108 6130 2.613691 GAATTTTCTCTGCCGTCCGTA 58.386 47.619 0.00 0.00 0.00 4.02
6142 6164 9.559958 GACAGTAATTAATTTCTCCACATGTTG 57.440 33.333 5.91 0.00 0.00 3.33
6170 6192 1.021202 CGCCTGAACTTGGTCAACAA 58.979 50.000 0.00 0.00 37.55 2.83
6213 6235 2.290641 CCGAACATAAGGTAGCCAATGC 59.709 50.000 4.48 0.00 37.95 3.56
6214 6236 3.541632 ACCGAACATAAGGTAGCCAATG 58.458 45.455 3.28 3.28 39.30 2.82
6215 6237 3.926058 ACCGAACATAAGGTAGCCAAT 57.074 42.857 0.00 0.00 39.30 3.16
6216 6238 3.244630 ACAACCGAACATAAGGTAGCCAA 60.245 43.478 0.00 0.00 40.37 4.52
6217 6239 2.303600 ACAACCGAACATAAGGTAGCCA 59.696 45.455 0.00 0.00 40.37 4.75
6232 6254 0.875059 GCTTCCTGGAGAAACAACCG 59.125 55.000 0.00 0.00 32.88 4.44
6347 6369 4.953940 TCACATACATACTGGCATAGCA 57.046 40.909 0.00 0.00 0.00 3.49
6361 6383 6.128035 TGTGCTTCAACCACATAATCACATAC 60.128 38.462 0.00 0.00 38.21 2.39
6371 6393 1.321474 CCACTGTGCTTCAACCACAT 58.679 50.000 1.29 0.00 41.84 3.21
6479 6501 0.250124 TCGTGTGGCTTCCGTCAAAT 60.250 50.000 0.00 0.00 0.00 2.32
6481 6503 0.604073 TATCGTGTGGCTTCCGTCAA 59.396 50.000 0.00 0.00 0.00 3.18
6486 6508 3.111853 TCATGATATCGTGTGGCTTCC 57.888 47.619 21.55 0.00 34.59 3.46
6496 6518 4.230314 AGACCTCGTGTTCATGATATCG 57.770 45.455 0.00 1.92 0.00 2.92
6509 6531 0.171455 GCGACTGATGAAGACCTCGT 59.829 55.000 0.00 0.00 0.00 4.18
6521 6543 0.956902 ATGCATGCAACTGCGACTGA 60.957 50.000 26.68 0.00 45.30 3.41
6523 6545 0.956902 TCATGCATGCAACTGCGACT 60.957 50.000 26.68 1.67 45.30 4.18
6524 6546 0.522705 CTCATGCATGCAACTGCGAC 60.523 55.000 26.68 0.00 45.30 5.19
6539 6561 2.027745 ACATTGTCCTCGAAGTGCTCAT 60.028 45.455 0.00 0.00 0.00 2.90
6543 6565 1.795768 TCACATTGTCCTCGAAGTGC 58.204 50.000 0.00 0.00 29.74 4.40
6551 6573 8.757982 ATATAAGCAAGAATTCACATTGTCCT 57.242 30.769 8.44 0.00 0.00 3.85
6552 6574 8.078596 GGATATAAGCAAGAATTCACATTGTCC 58.921 37.037 8.44 2.49 0.00 4.02
6553 6575 8.623903 TGGATATAAGCAAGAATTCACATTGTC 58.376 33.333 8.44 1.21 0.00 3.18
6554 6576 8.523915 TGGATATAAGCAAGAATTCACATTGT 57.476 30.769 8.44 0.00 0.00 2.71
6555 6577 8.843262 TCTGGATATAAGCAAGAATTCACATTG 58.157 33.333 8.44 4.95 0.00 2.82
6556 6578 8.844244 GTCTGGATATAAGCAAGAATTCACATT 58.156 33.333 8.44 0.00 0.00 2.71
6557 6579 7.994911 TGTCTGGATATAAGCAAGAATTCACAT 59.005 33.333 8.44 0.00 0.00 3.21
6558 6580 7.337938 TGTCTGGATATAAGCAAGAATTCACA 58.662 34.615 8.44 0.00 0.00 3.58
6559 6581 7.497249 ACTGTCTGGATATAAGCAAGAATTCAC 59.503 37.037 8.44 0.00 0.00 3.18
6589 6611 7.087007 TGCATTTTTATCGTGTTTATGCAAGA 58.913 30.769 0.00 0.00 42.51 3.02
6631 6689 9.178758 AGCGATAAGATTCCTTTGTATCTTTTT 57.821 29.630 0.00 0.00 38.85 1.94
6652 6710 0.960364 ATGTGGCGGTGAAAAGCGAT 60.960 50.000 0.95 0.00 0.00 4.58
6654 6712 1.154225 GATGTGGCGGTGAAAAGCG 60.154 57.895 0.00 0.00 0.00 4.68
6708 6766 0.596577 CGACCACTGAAGACTCCGAA 59.403 55.000 0.00 0.00 0.00 4.30
6759 6817 6.154021 ACTGCTTGGATATCAGCAAAGAAATT 59.846 34.615 16.12 0.00 36.81 1.82
6760 6818 5.655532 ACTGCTTGGATATCAGCAAAGAAAT 59.344 36.000 16.12 0.01 36.81 2.17
6762 6820 4.592942 ACTGCTTGGATATCAGCAAAGAA 58.407 39.130 16.12 4.00 36.81 2.52
6764 6822 6.436261 CAATACTGCTTGGATATCAGCAAAG 58.564 40.000 16.12 9.77 36.81 2.77
6765 6823 5.221106 GCAATACTGCTTGGATATCAGCAAA 60.221 40.000 16.12 9.55 45.74 3.68
6785 6848 6.887626 AGAAAAATGCTTTCAAATGGCAAT 57.112 29.167 0.00 0.00 39.46 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.