Multiple sequence alignment - TraesCS4D01G088900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G088900 chr4D 100.000 6894 0 0 1 6894 64535176 64542069 0.000000e+00 12731.0
1 TraesCS4D01G088900 chr4D 90.128 1479 125 7 2824 4300 64356168 64354709 0.000000e+00 1903.0
2 TraesCS4D01G088900 chr4D 85.818 1657 189 28 4296 5935 64349333 64347706 0.000000e+00 1716.0
3 TraesCS4D01G088900 chr4B 95.435 4184 126 24 2539 6697 95068949 95073092 0.000000e+00 6608.0
4 TraesCS4D01G088900 chr4B 91.029 2965 252 10 2806 5768 94791602 94788650 0.000000e+00 3989.0
5 TraesCS4D01G088900 chr4B 92.375 1600 78 25 927 2499 95067368 95068950 0.000000e+00 2239.0
6 TraesCS4D01G088900 chr4B 89.868 227 17 2 6668 6894 95073099 95073319 3.150000e-73 287.0
7 TraesCS4D01G088900 chr4B 82.943 299 23 18 441 736 95066980 95067253 1.920000e-60 244.0
8 TraesCS4D01G088900 chr4B 83.700 227 32 4 216 437 95066673 95066899 7.010000e-50 209.0
9 TraesCS4D01G088900 chr4A 97.651 3405 78 1 2539 5941 531680828 531677424 0.000000e+00 5843.0
10 TraesCS4D01G088900 chr4A 85.302 3191 407 37 2766 5935 531386675 531383526 0.000000e+00 3238.0
11 TraesCS4D01G088900 chr4A 85.425 2566 310 31 3294 5855 532215674 532218179 0.000000e+00 2608.0
12 TraesCS4D01G088900 chr4A 91.483 1585 76 26 944 2499 531682381 531680827 0.000000e+00 2124.0
13 TraesCS4D01G088900 chr4A 80.422 996 134 28 2770 3738 626302384 626301423 0.000000e+00 702.0
14 TraesCS4D01G088900 chr4A 79.955 898 154 17 3870 4746 626299911 626299019 7.540000e-179 638.0
15 TraesCS4D01G088900 chr4A 79.494 356 50 13 959 1294 531388964 531388612 1.500000e-56 231.0
16 TraesCS4D01G088900 chr4A 83.406 229 15 8 529 753 531683343 531683134 2.540000e-44 191.0
17 TraesCS4D01G088900 chr4A 92.308 52 2 2 4 54 175416094 175416044 9.590000e-09 73.1
18 TraesCS4D01G088900 chr4A 95.000 40 1 1 70 109 536876220 536876258 2.080000e-05 62.1
19 TraesCS4D01G088900 chr2D 83.969 2938 428 21 2766 5698 580192054 580194953 0.000000e+00 2776.0
20 TraesCS4D01G088900 chr2D 75.704 568 103 23 2058 2603 580191431 580191985 1.150000e-62 252.0
21 TraesCS4D01G088900 chr2B 83.659 2968 435 26 2778 5739 699107712 699110635 0.000000e+00 2748.0
22 TraesCS4D01G088900 chr2B 100.000 30 0 0 75 104 591605291 591605320 1.000000e-03 56.5
23 TraesCS4D01G088900 chr2A 83.664 1763 249 19 3945 5698 718119194 718120926 0.000000e+00 1624.0
24 TraesCS4D01G088900 chr2A 97.143 35 1 0 2727 2761 722734228 722734194 7.470000e-05 60.2
25 TraesCS4D01G088900 chrUn 79.757 494 84 9 3575 4057 358384661 358385149 1.840000e-90 344.0
26 TraesCS4D01G088900 chrUn 90.566 53 4 1 5 56 323769781 323769833 1.240000e-07 69.4
27 TraesCS4D01G088900 chrUn 90.566 53 4 1 5 56 323818252 323818200 1.240000e-07 69.4
28 TraesCS4D01G088900 chrUn 90.566 53 4 1 5 56 343894181 343894233 1.240000e-07 69.4
29 TraesCS4D01G088900 chrUn 90.566 53 4 1 5 56 343896624 343896676 1.240000e-07 69.4
30 TraesCS4D01G088900 chrUn 90.566 53 4 1 5 56 382736068 382736120 1.240000e-07 69.4
31 TraesCS4D01G088900 chr3D 80.089 447 79 7 2766 3207 438451673 438452114 2.400000e-84 324.0
32 TraesCS4D01G088900 chr3D 91.071 56 3 2 2 56 582816059 582816113 2.670000e-09 75.0
33 TraesCS4D01G088900 chr3B 77.677 439 86 6 2777 3207 573979286 573978852 2.470000e-64 257.0
34 TraesCS4D01G088900 chr3B 97.059 34 1 0 70 103 721009178 721009211 2.690000e-04 58.4
35 TraesCS4D01G088900 chr3B 89.130 46 2 3 59 102 143149745 143149789 3.000000e-03 54.7
36 TraesCS4D01G088900 chr7D 93.617 47 3 0 10 56 4784569 4784523 3.450000e-08 71.3
37 TraesCS4D01G088900 chr7B 89.474 57 5 1 2 57 465788241 465788297 3.450000e-08 71.3
38 TraesCS4D01G088900 chr7B 97.222 36 1 0 69 104 706075819 706075854 2.080000e-05 62.1
39 TraesCS4D01G088900 chr1B 97.297 37 0 1 74 110 57768780 57768745 2.080000e-05 62.1
40 TraesCS4D01G088900 chr6B 97.143 35 1 0 70 104 643816012 643816046 7.470000e-05 60.2
41 TraesCS4D01G088900 chr3A 97.059 34 1 0 70 103 681646049 681646082 2.690000e-04 58.4
42 TraesCS4D01G088900 chr3A 89.130 46 2 3 73 116 536641047 536641091 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G088900 chr4D 64535176 64542069 6893 False 12731.000000 12731 100.000000 1 6894 1 chr4D.!!$F1 6893
1 TraesCS4D01G088900 chr4D 64354709 64356168 1459 True 1903.000000 1903 90.128000 2824 4300 1 chr4D.!!$R2 1476
2 TraesCS4D01G088900 chr4D 64347706 64349333 1627 True 1716.000000 1716 85.818000 4296 5935 1 chr4D.!!$R1 1639
3 TraesCS4D01G088900 chr4B 94788650 94791602 2952 True 3989.000000 3989 91.029000 2806 5768 1 chr4B.!!$R1 2962
4 TraesCS4D01G088900 chr4B 95066673 95073319 6646 False 1917.400000 6608 88.864200 216 6894 5 chr4B.!!$F1 6678
5 TraesCS4D01G088900 chr4A 531677424 531683343 5919 True 2719.333333 5843 90.846667 529 5941 3 chr4A.!!$R3 5412
6 TraesCS4D01G088900 chr4A 532215674 532218179 2505 False 2608.000000 2608 85.425000 3294 5855 1 chr4A.!!$F1 2561
7 TraesCS4D01G088900 chr4A 531383526 531388964 5438 True 1734.500000 3238 82.398000 959 5935 2 chr4A.!!$R2 4976
8 TraesCS4D01G088900 chr4A 626299019 626302384 3365 True 670.000000 702 80.188500 2770 4746 2 chr4A.!!$R4 1976
9 TraesCS4D01G088900 chr2D 580191431 580194953 3522 False 1514.000000 2776 79.836500 2058 5698 2 chr2D.!!$F1 3640
10 TraesCS4D01G088900 chr2B 699107712 699110635 2923 False 2748.000000 2748 83.659000 2778 5739 1 chr2B.!!$F2 2961
11 TraesCS4D01G088900 chr2A 718119194 718120926 1732 False 1624.000000 1624 83.664000 3945 5698 1 chr2A.!!$F1 1753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.036164 TCCCACACATTTGTCTCCGG 59.964 55.000 0.0 0.0 31.66 5.14 F
104 105 0.107654 GCGTTGGAGATGCCCTAAGT 60.108 55.000 0.0 0.0 34.03 2.24 F
994 1647 0.179056 GGGGCATCGCAAGTAGCTAA 60.179 55.000 0.0 0.0 42.61 3.09 F
1603 2365 0.111061 ATGCTGGCTGTCCTGTTTGA 59.889 50.000 0.0 0.0 34.18 2.69 F
1609 2371 0.304705 GCTGTCCTGTTTGACGTGTG 59.695 55.000 0.0 0.0 38.11 3.82 F
2249 3619 0.467804 AATTTTTGTGCCCGCCTGTT 59.532 45.000 0.0 0.0 0.00 3.16 F
3391 4810 1.271982 TGTACTCCGAAGAGCCAGAGT 60.272 52.381 0.0 0.0 44.65 3.24 F
4413 7330 2.128035 CAGGATAAGGATGTTCGTCGC 58.872 52.381 0.0 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1459 2220 0.388294 CTCTCTCTGCCATGCATCGA 59.612 55.000 0.00 0.0 38.13 3.59 R
1588 2350 0.813610 CACGTCAAACAGGACAGCCA 60.814 55.000 0.00 0.0 37.66 4.75 R
2233 3603 1.271102 GAATAACAGGCGGGCACAAAA 59.729 47.619 3.78 0.0 0.00 2.44 R
3254 4673 1.822990 TCTCAGTAAGTGGGTTAGCGG 59.177 52.381 0.00 0.0 0.00 5.52 R
3750 5176 2.511600 GCGACATGGTCCTTCCGG 60.512 66.667 0.00 0.0 39.52 5.14 R
3849 5275 0.885879 GGCCCTTCCGGTTGTAAAAG 59.114 55.000 0.00 0.0 0.00 2.27 R
5185 8112 0.034089 CCCAGTGGATCTTCCCCAAC 60.034 60.000 11.95 0.0 35.03 3.77 R
6379 9360 0.031857 CGGCCAAAGCAATTGTGACA 59.968 50.000 2.24 0.0 42.56 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.827505 ACTGCAAAGTCCCACACAT 57.172 47.368 0.00 0.00 0.00 3.21
19 20 2.071778 ACTGCAAAGTCCCACACATT 57.928 45.000 0.00 0.00 0.00 2.71
20 21 2.387757 ACTGCAAAGTCCCACACATTT 58.612 42.857 0.00 0.00 0.00 2.32
21 22 2.101249 ACTGCAAAGTCCCACACATTTG 59.899 45.455 0.00 0.00 36.07 2.32
22 23 2.101249 CTGCAAAGTCCCACACATTTGT 59.899 45.455 0.00 0.00 35.55 2.83
23 24 2.100584 TGCAAAGTCCCACACATTTGTC 59.899 45.455 0.00 0.00 35.55 3.18
24 25 2.362077 GCAAAGTCCCACACATTTGTCT 59.638 45.455 0.00 0.00 35.55 3.41
25 26 3.550842 GCAAAGTCCCACACATTTGTCTC 60.551 47.826 0.00 0.00 35.55 3.36
26 27 2.568623 AGTCCCACACATTTGTCTCC 57.431 50.000 0.00 0.00 31.66 3.71
27 28 1.156736 GTCCCACACATTTGTCTCCG 58.843 55.000 0.00 0.00 31.66 4.63
28 29 0.036164 TCCCACACATTTGTCTCCGG 59.964 55.000 0.00 0.00 31.66 5.14
29 30 0.250727 CCCACACATTTGTCTCCGGT 60.251 55.000 0.00 0.00 31.66 5.28
30 31 1.604604 CCACACATTTGTCTCCGGTT 58.395 50.000 0.00 0.00 31.66 4.44
31 32 1.953686 CCACACATTTGTCTCCGGTTT 59.046 47.619 0.00 0.00 31.66 3.27
32 33 2.287547 CCACACATTTGTCTCCGGTTTG 60.288 50.000 0.00 0.00 31.66 2.93
33 34 1.336755 ACACATTTGTCTCCGGTTTGC 59.663 47.619 0.00 0.00 0.00 3.68
34 35 0.591170 ACATTTGTCTCCGGTTTGCG 59.409 50.000 0.00 0.00 0.00 4.85
35 36 0.109781 CATTTGTCTCCGGTTTGCGG 60.110 55.000 0.00 0.00 0.00 5.69
36 37 1.241315 ATTTGTCTCCGGTTTGCGGG 61.241 55.000 0.00 0.00 36.54 6.13
37 38 2.326773 TTTGTCTCCGGTTTGCGGGA 62.327 55.000 0.00 0.00 41.10 5.14
41 42 2.830317 TCCGGTTTGCGGGAGAAA 59.170 55.556 0.00 0.00 38.90 2.52
42 43 1.148723 TCCGGTTTGCGGGAGAAAA 59.851 52.632 0.00 0.00 38.90 2.29
47 48 2.783228 TTTGCGGGAGAAAACGTGT 58.217 47.368 0.00 0.00 30.81 4.49
48 49 0.658897 TTTGCGGGAGAAAACGTGTC 59.341 50.000 0.00 0.00 30.81 3.67
49 50 1.161563 TTGCGGGAGAAAACGTGTCC 61.162 55.000 0.00 0.00 39.05 4.02
50 51 2.664436 GCGGGAGAAAACGTGTCCG 61.664 63.158 0.00 0.00 40.79 4.79
51 52 2.025418 CGGGAGAAAACGTGTCCGG 61.025 63.158 0.00 0.00 40.79 5.14
52 53 1.368579 GGGAGAAAACGTGTCCGGA 59.631 57.895 0.00 0.00 40.79 5.14
53 54 0.947660 GGGAGAAAACGTGTCCGGAC 60.948 60.000 28.17 28.17 40.79 4.79
54 55 0.947660 GGAGAAAACGTGTCCGGACC 60.948 60.000 31.19 20.60 38.78 4.46
55 56 1.280206 GAGAAAACGTGTCCGGACCG 61.280 60.000 31.11 31.11 38.78 4.79
70 71 2.882876 CCGGACAGTACGGTCAGG 59.117 66.667 25.27 25.27 46.03 3.86
71 72 3.991999 CGGACAGTACGGTCAGGA 58.008 61.111 24.48 0.00 39.59 3.86
72 73 1.505353 CGGACAGTACGGTCAGGAC 59.495 63.158 24.48 8.82 39.59 3.85
73 74 1.505353 GGACAGTACGGTCAGGACG 59.495 63.158 24.48 0.00 39.19 4.79
75 76 0.595095 GACAGTACGGTCAGGACGTT 59.405 55.000 19.57 0.00 42.70 3.99
76 77 1.000938 GACAGTACGGTCAGGACGTTT 60.001 52.381 19.57 0.00 42.70 3.60
77 78 1.269413 ACAGTACGGTCAGGACGTTTG 60.269 52.381 0.00 0.00 42.70 2.93
78 79 0.319297 AGTACGGTCAGGACGTTTGC 60.319 55.000 0.00 0.00 42.70 3.68
79 80 1.372004 TACGGTCAGGACGTTTGCG 60.372 57.895 0.00 0.00 42.70 4.85
80 81 2.752322 TACGGTCAGGACGTTTGCGG 62.752 60.000 0.00 0.00 42.70 5.69
81 82 3.047877 GGTCAGGACGTTTGCGGG 61.048 66.667 0.00 0.00 43.45 6.13
82 83 2.280592 GTCAGGACGTTTGCGGGT 60.281 61.111 0.00 0.00 43.45 5.28
83 84 2.029964 TCAGGACGTTTGCGGGTC 59.970 61.111 0.00 0.00 43.45 4.46
84 85 3.411351 CAGGACGTTTGCGGGTCG 61.411 66.667 0.00 0.00 43.45 4.79
85 86 4.675029 AGGACGTTTGCGGGTCGG 62.675 66.667 0.00 0.00 43.45 4.79
90 91 4.676586 GTTTGCGGGTCGGCGTTG 62.677 66.667 6.85 0.00 35.06 4.10
95 96 4.143333 CGGGTCGGCGTTGGAGAT 62.143 66.667 6.85 0.00 0.00 2.75
96 97 2.511600 GGGTCGGCGTTGGAGATG 60.512 66.667 6.85 0.00 0.00 2.90
97 98 3.195698 GGTCGGCGTTGGAGATGC 61.196 66.667 6.85 0.00 39.65 3.91
102 103 4.954933 GCGTTGGAGATGCCCTAA 57.045 55.556 0.00 0.00 34.03 2.69
103 104 2.695314 GCGTTGGAGATGCCCTAAG 58.305 57.895 0.00 0.00 34.03 2.18
104 105 0.107654 GCGTTGGAGATGCCCTAAGT 60.108 55.000 0.00 0.00 34.03 2.24
105 106 1.138266 GCGTTGGAGATGCCCTAAGTA 59.862 52.381 0.00 0.00 34.03 2.24
106 107 2.803492 GCGTTGGAGATGCCCTAAGTAG 60.803 54.545 0.00 0.00 34.03 2.57
107 108 2.693591 CGTTGGAGATGCCCTAAGTAGA 59.306 50.000 0.00 0.00 34.97 2.59
108 109 3.491104 CGTTGGAGATGCCCTAAGTAGAC 60.491 52.174 0.00 0.00 34.97 2.59
109 110 3.398318 TGGAGATGCCCTAAGTAGACA 57.602 47.619 0.00 0.00 34.97 3.41
110 111 3.719871 TGGAGATGCCCTAAGTAGACAA 58.280 45.455 0.00 0.00 34.97 3.18
111 112 3.451178 TGGAGATGCCCTAAGTAGACAAC 59.549 47.826 0.00 0.00 34.97 3.32
112 113 3.707102 GGAGATGCCCTAAGTAGACAACT 59.293 47.826 0.00 0.00 41.49 3.16
113 114 6.284953 TGGAGATGCCCTAAGTAGACAACTT 61.285 44.000 0.00 0.00 43.19 2.66
114 115 5.338463 GGAGATGCCCTAAGTAGACAACTTT 60.338 44.000 0.00 0.00 46.61 2.66
115 116 5.735766 AGATGCCCTAAGTAGACAACTTTC 58.264 41.667 0.00 0.00 46.61 2.62
116 117 4.281898 TGCCCTAAGTAGACAACTTTCC 57.718 45.455 0.00 0.00 46.61 3.13
117 118 3.649023 TGCCCTAAGTAGACAACTTTCCA 59.351 43.478 0.00 0.00 46.61 3.53
118 119 4.288626 TGCCCTAAGTAGACAACTTTCCAT 59.711 41.667 0.00 0.00 46.61 3.41
119 120 5.222048 TGCCCTAAGTAGACAACTTTCCATT 60.222 40.000 0.00 0.00 46.61 3.16
120 121 5.710567 GCCCTAAGTAGACAACTTTCCATTT 59.289 40.000 0.00 0.00 46.61 2.32
121 122 6.208797 GCCCTAAGTAGACAACTTTCCATTTT 59.791 38.462 0.00 0.00 46.61 1.82
122 123 7.392393 GCCCTAAGTAGACAACTTTCCATTTTA 59.608 37.037 0.00 0.00 46.61 1.52
123 124 9.462606 CCCTAAGTAGACAACTTTCCATTTTAT 57.537 33.333 0.00 0.00 46.61 1.40
127 128 9.740710 AAGTAGACAACTTTCCATTTTATAGCT 57.259 29.630 0.00 0.00 46.61 3.32
128 129 9.167311 AGTAGACAACTTTCCATTTTATAGCTG 57.833 33.333 0.00 0.00 33.35 4.24
129 130 7.396540 AGACAACTTTCCATTTTATAGCTGG 57.603 36.000 0.00 0.00 0.00 4.85
130 131 6.378280 AGACAACTTTCCATTTTATAGCTGGG 59.622 38.462 0.00 0.00 0.00 4.45
131 132 5.105351 ACAACTTTCCATTTTATAGCTGGGC 60.105 40.000 0.00 0.00 0.00 5.36
132 133 4.609301 ACTTTCCATTTTATAGCTGGGCA 58.391 39.130 0.00 0.00 0.00 5.36
133 134 5.211201 ACTTTCCATTTTATAGCTGGGCAT 58.789 37.500 0.00 0.00 0.00 4.40
134 135 5.069516 ACTTTCCATTTTATAGCTGGGCATG 59.930 40.000 0.00 0.00 0.00 4.06
135 136 2.892852 TCCATTTTATAGCTGGGCATGC 59.107 45.455 9.90 9.90 0.00 4.06
136 137 2.352030 CCATTTTATAGCTGGGCATGCG 60.352 50.000 12.44 0.00 35.28 4.73
137 138 2.340210 TTTTATAGCTGGGCATGCGA 57.660 45.000 12.44 0.00 35.28 5.10
138 139 1.882912 TTTATAGCTGGGCATGCGAG 58.117 50.000 12.44 11.20 35.28 5.03
139 140 0.758734 TTATAGCTGGGCATGCGAGT 59.241 50.000 12.44 4.07 35.28 4.18
140 141 1.627864 TATAGCTGGGCATGCGAGTA 58.372 50.000 12.44 5.99 35.28 2.59
141 142 0.979665 ATAGCTGGGCATGCGAGTAT 59.020 50.000 12.44 7.80 35.28 2.12
142 143 1.627864 TAGCTGGGCATGCGAGTATA 58.372 50.000 12.44 5.20 35.28 1.47
143 144 0.758734 AGCTGGGCATGCGAGTATAA 59.241 50.000 12.44 0.00 35.28 0.98
144 145 1.140852 AGCTGGGCATGCGAGTATAAA 59.859 47.619 12.44 0.00 35.28 1.40
145 146 1.946768 GCTGGGCATGCGAGTATAAAA 59.053 47.619 12.44 0.00 0.00 1.52
146 147 2.031682 GCTGGGCATGCGAGTATAAAAG 60.032 50.000 12.44 0.00 0.00 2.27
147 148 3.206150 CTGGGCATGCGAGTATAAAAGT 58.794 45.455 12.44 0.00 0.00 2.66
148 149 2.942376 TGGGCATGCGAGTATAAAAGTG 59.058 45.455 12.44 0.00 0.00 3.16
149 150 2.943033 GGGCATGCGAGTATAAAAGTGT 59.057 45.455 12.44 0.00 0.00 3.55
150 151 4.124238 GGGCATGCGAGTATAAAAGTGTA 58.876 43.478 12.44 0.00 0.00 2.90
151 152 4.211374 GGGCATGCGAGTATAAAAGTGTAG 59.789 45.833 12.44 0.00 0.00 2.74
152 153 4.809426 GGCATGCGAGTATAAAAGTGTAGT 59.191 41.667 12.44 0.00 0.00 2.73
153 154 5.293569 GGCATGCGAGTATAAAAGTGTAGTT 59.706 40.000 12.44 0.00 0.00 2.24
154 155 6.183360 GGCATGCGAGTATAAAAGTGTAGTTT 60.183 38.462 12.44 0.00 0.00 2.66
155 156 7.010738 GGCATGCGAGTATAAAAGTGTAGTTTA 59.989 37.037 12.44 0.00 0.00 2.01
156 157 8.056571 GCATGCGAGTATAAAAGTGTAGTTTAG 58.943 37.037 0.00 0.00 0.00 1.85
157 158 9.297586 CATGCGAGTATAAAAGTGTAGTTTAGA 57.702 33.333 0.00 0.00 0.00 2.10
158 159 9.865321 ATGCGAGTATAAAAGTGTAGTTTAGAA 57.135 29.630 0.00 0.00 0.00 2.10
159 160 9.865321 TGCGAGTATAAAAGTGTAGTTTAGAAT 57.135 29.630 0.00 0.00 0.00 2.40
169 170 7.778470 AGTGTAGTTTAGAATTATCTGCTGC 57.222 36.000 0.00 0.00 37.10 5.25
170 171 7.331026 AGTGTAGTTTAGAATTATCTGCTGCA 58.669 34.615 0.88 0.88 37.10 4.41
171 172 7.278868 AGTGTAGTTTAGAATTATCTGCTGCAC 59.721 37.037 0.00 13.97 41.34 4.57
172 173 7.064609 GTGTAGTTTAGAATTATCTGCTGCACA 59.935 37.037 0.00 0.00 41.08 4.57
173 174 7.606073 TGTAGTTTAGAATTATCTGCTGCACAA 59.394 33.333 0.00 0.00 37.10 3.33
174 175 7.452880 AGTTTAGAATTATCTGCTGCACAAA 57.547 32.000 0.00 0.00 37.10 2.83
175 176 8.059798 AGTTTAGAATTATCTGCTGCACAAAT 57.940 30.769 0.00 0.00 37.10 2.32
176 177 8.186821 AGTTTAGAATTATCTGCTGCACAAATC 58.813 33.333 0.00 0.00 37.10 2.17
177 178 7.628769 TTAGAATTATCTGCTGCACAAATCA 57.371 32.000 0.00 0.00 37.10 2.57
178 179 6.519679 AGAATTATCTGCTGCACAAATCAA 57.480 33.333 0.00 0.00 33.59 2.57
179 180 6.327934 AGAATTATCTGCTGCACAAATCAAC 58.672 36.000 0.00 0.00 33.59 3.18
180 181 5.648178 ATTATCTGCTGCACAAATCAACA 57.352 34.783 0.00 0.00 0.00 3.33
181 182 5.648178 TTATCTGCTGCACAAATCAACAT 57.352 34.783 0.00 0.00 0.00 2.71
182 183 3.564235 TCTGCTGCACAAATCAACATC 57.436 42.857 0.00 0.00 0.00 3.06
183 184 3.151554 TCTGCTGCACAAATCAACATCT 58.848 40.909 0.00 0.00 0.00 2.90
184 185 3.189910 TCTGCTGCACAAATCAACATCTC 59.810 43.478 0.00 0.00 0.00 2.75
185 186 2.885894 TGCTGCACAAATCAACATCTCA 59.114 40.909 0.00 0.00 0.00 3.27
186 187 3.240069 GCTGCACAAATCAACATCTCAC 58.760 45.455 0.00 0.00 0.00 3.51
187 188 3.057736 GCTGCACAAATCAACATCTCACT 60.058 43.478 0.00 0.00 0.00 3.41
188 189 4.558095 GCTGCACAAATCAACATCTCACTT 60.558 41.667 0.00 0.00 0.00 3.16
189 190 5.518848 TGCACAAATCAACATCTCACTTT 57.481 34.783 0.00 0.00 0.00 2.66
190 191 5.522456 TGCACAAATCAACATCTCACTTTC 58.478 37.500 0.00 0.00 0.00 2.62
191 192 4.919754 GCACAAATCAACATCTCACTTTCC 59.080 41.667 0.00 0.00 0.00 3.13
192 193 5.278660 GCACAAATCAACATCTCACTTTCCT 60.279 40.000 0.00 0.00 0.00 3.36
193 194 6.147581 CACAAATCAACATCTCACTTTCCTG 58.852 40.000 0.00 0.00 0.00 3.86
194 195 6.016860 CACAAATCAACATCTCACTTTCCTGA 60.017 38.462 0.00 0.00 0.00 3.86
195 196 6.547141 ACAAATCAACATCTCACTTTCCTGAA 59.453 34.615 0.00 0.00 0.00 3.02
196 197 7.068593 ACAAATCAACATCTCACTTTCCTGAAA 59.931 33.333 0.00 0.00 0.00 2.69
197 198 7.587037 AATCAACATCTCACTTTCCTGAAAA 57.413 32.000 0.00 0.00 0.00 2.29
198 199 7.771927 ATCAACATCTCACTTTCCTGAAAAT 57.228 32.000 0.00 0.00 0.00 1.82
199 200 7.587037 TCAACATCTCACTTTCCTGAAAATT 57.413 32.000 0.00 0.00 0.00 1.82
200 201 8.690203 TCAACATCTCACTTTCCTGAAAATTA 57.310 30.769 0.00 0.00 0.00 1.40
201 202 9.130661 TCAACATCTCACTTTCCTGAAAATTAA 57.869 29.630 0.00 0.00 0.00 1.40
202 203 9.918630 CAACATCTCACTTTCCTGAAAATTAAT 57.081 29.630 0.00 0.00 0.00 1.40
204 205 9.525826 ACATCTCACTTTCCTGAAAATTAATCT 57.474 29.630 0.00 0.00 0.00 2.40
207 208 9.573166 TCTCACTTTCCTGAAAATTAATCTTCA 57.427 29.630 4.22 4.22 0.00 3.02
209 210 9.965824 TCACTTTCCTGAAAATTAATCTTCAAC 57.034 29.630 5.74 0.00 31.41 3.18
210 211 9.196552 CACTTTCCTGAAAATTAATCTTCAACC 57.803 33.333 5.74 0.00 31.41 3.77
211 212 8.367911 ACTTTCCTGAAAATTAATCTTCAACCC 58.632 33.333 5.74 0.00 31.41 4.11
212 213 8.491045 TTTCCTGAAAATTAATCTTCAACCCT 57.509 30.769 5.74 0.00 31.41 4.34
213 214 9.594936 TTTCCTGAAAATTAATCTTCAACCCTA 57.405 29.630 5.74 0.00 31.41 3.53
214 215 9.768215 TTCCTGAAAATTAATCTTCAACCCTAT 57.232 29.630 5.74 0.00 31.41 2.57
223 224 8.691661 TTAATCTTCAACCCTATAAATCCTGC 57.308 34.615 0.00 0.00 0.00 4.85
226 227 4.164843 TCAACCCTATAAATCCTGCCAC 57.835 45.455 0.00 0.00 0.00 5.01
228 229 1.420138 ACCCTATAAATCCTGCCACCG 59.580 52.381 0.00 0.00 0.00 4.94
232 233 2.256117 ATAAATCCTGCCACCGTAGC 57.744 50.000 0.00 0.00 0.00 3.58
233 234 0.179468 TAAATCCTGCCACCGTAGCC 59.821 55.000 0.00 0.00 0.00 3.93
234 235 1.847798 AAATCCTGCCACCGTAGCCA 61.848 55.000 0.00 0.00 0.00 4.75
244 245 4.101274 TGCCACCGTAGCCATAATTAGTTA 59.899 41.667 0.00 0.00 0.00 2.24
245 246 4.450080 GCCACCGTAGCCATAATTAGTTAC 59.550 45.833 0.00 0.00 0.00 2.50
248 249 6.764560 CCACCGTAGCCATAATTAGTTACTTT 59.235 38.462 0.00 0.00 0.00 2.66
253 254 9.807386 CGTAGCCATAATTAGTTACTTTTATGC 57.193 33.333 15.97 12.96 32.97 3.14
304 307 6.990341 TCTATGTAAGTTGTAGTGCGACTA 57.010 37.500 1.04 0.00 40.85 2.59
305 308 7.381766 TCTATGTAAGTTGTAGTGCGACTAA 57.618 36.000 1.04 0.00 40.85 2.24
310 313 7.790000 TGTAAGTTGTAGTGCGACTAATTTTC 58.210 34.615 1.04 0.00 40.85 2.29
313 316 5.178809 AGTTGTAGTGCGACTAATTTTCCAC 59.821 40.000 0.00 0.00 39.96 4.02
318 322 1.132453 GCGACTAATTTTCCACCCTGC 59.868 52.381 0.00 0.00 0.00 4.85
328 332 5.878406 TTTTCCACCCTGCAAAGAAATAA 57.122 34.783 0.00 0.00 0.00 1.40
336 340 4.864247 CCCTGCAAAGAAATAAAACCGATG 59.136 41.667 0.00 0.00 0.00 3.84
342 347 6.183360 GCAAAGAAATAAAACCGATGCTTCTG 60.183 38.462 0.00 0.00 0.00 3.02
343 348 6.817765 AAGAAATAAAACCGATGCTTCTGA 57.182 33.333 0.00 0.00 0.00 3.27
366 371 6.427853 TGAATCGAATGTGTTCTTCTGAATGT 59.572 34.615 0.00 0.00 34.40 2.71
377 382 8.514594 GTGTTCTTCTGAATGTGGAATTATTGA 58.485 33.333 0.00 0.00 34.40 2.57
434 439 7.208064 ACTTAGAGGGAATTTATGCAGGTTA 57.792 36.000 0.00 0.00 0.00 2.85
435 440 7.816411 ACTTAGAGGGAATTTATGCAGGTTAT 58.184 34.615 0.00 0.00 0.00 1.89
437 442 6.966534 AGAGGGAATTTATGCAGGTTATTG 57.033 37.500 0.00 0.00 0.00 1.90
439 444 6.547510 AGAGGGAATTTATGCAGGTTATTGTC 59.452 38.462 0.00 0.00 0.00 3.18
450 533 4.036262 GCAGGTTATTGTCGAATTATGGCA 59.964 41.667 0.00 0.00 0.00 4.92
451 534 5.449862 GCAGGTTATTGTCGAATTATGGCAA 60.450 40.000 0.00 0.27 0.00 4.52
452 535 5.971202 CAGGTTATTGTCGAATTATGGCAAC 59.029 40.000 0.00 0.00 0.00 4.17
475 558 3.826157 TCCACCAGAGTTGCTTTTATTGG 59.174 43.478 0.00 0.00 0.00 3.16
476 559 3.826157 CCACCAGAGTTGCTTTTATTGGA 59.174 43.478 0.00 0.00 0.00 3.53
477 560 4.082571 CCACCAGAGTTGCTTTTATTGGAG 60.083 45.833 0.00 0.00 0.00 3.86
478 561 4.520492 CACCAGAGTTGCTTTTATTGGAGT 59.480 41.667 0.00 0.00 0.00 3.85
482 565 6.986231 CCAGAGTTGCTTTTATTGGAGTTTTT 59.014 34.615 0.00 0.00 0.00 1.94
524 607 1.344114 GTTGCCCTTGCTGAAATTGGA 59.656 47.619 0.00 0.00 38.71 3.53
553 636 7.833183 AGAATCTTTTCTTGATCTAGTTGCCAT 59.167 33.333 4.06 0.00 39.18 4.40
595 678 6.557291 TTGTTTATAACCACTTAACCACCG 57.443 37.500 0.00 0.00 0.00 4.94
596 679 5.619220 TGTTTATAACCACTTAACCACCGT 58.381 37.500 0.00 0.00 0.00 4.83
597 680 6.763355 TGTTTATAACCACTTAACCACCGTA 58.237 36.000 0.00 0.00 0.00 4.02
598 681 6.873076 TGTTTATAACCACTTAACCACCGTAG 59.127 38.462 0.00 0.00 0.00 3.51
599 682 2.174363 AACCACTTAACCACCGTAGC 57.826 50.000 0.00 0.00 0.00 3.58
600 683 0.322648 ACCACTTAACCACCGTAGCC 59.677 55.000 0.00 0.00 0.00 3.93
601 684 0.322322 CCACTTAACCACCGTAGCCA 59.678 55.000 0.00 0.00 0.00 4.75
602 685 1.065709 CCACTTAACCACCGTAGCCAT 60.066 52.381 0.00 0.00 0.00 4.40
603 686 2.168936 CCACTTAACCACCGTAGCCATA 59.831 50.000 0.00 0.00 0.00 2.74
604 687 3.369681 CCACTTAACCACCGTAGCCATAA 60.370 47.826 0.00 0.00 0.00 1.90
605 688 4.448210 CACTTAACCACCGTAGCCATAAT 58.552 43.478 0.00 0.00 0.00 1.28
606 689 4.879545 CACTTAACCACCGTAGCCATAATT 59.120 41.667 0.00 0.00 0.00 1.40
650 733 1.209261 TGTGAAGAGTGCACTGAACCA 59.791 47.619 27.27 13.48 37.18 3.67
653 736 4.065088 GTGAAGAGTGCACTGAACCATAA 58.935 43.478 27.27 0.00 33.57 1.90
668 751 7.026631 TGAACCATAAACTTTGACAAGTCTG 57.973 36.000 1.53 0.00 42.89 3.51
682 767 4.717629 TCTGACGGCCAAGACGCG 62.718 66.667 3.53 3.53 37.73 6.01
707 792 4.804139 AGTCGCGGTCTTTTATATTCACAG 59.196 41.667 6.13 0.00 0.00 3.66
730 815 1.493772 TAACACAACAAGACGGCTCG 58.506 50.000 0.00 0.00 0.00 5.03
736 821 2.125912 CAAGACGGCTCGACCTGG 60.126 66.667 0.00 0.00 35.61 4.45
737 822 4.070552 AAGACGGCTCGACCTGGC 62.071 66.667 0.00 0.00 35.61 4.85
743 828 1.964373 GGCTCGACCTGGCGAAAAA 60.964 57.895 12.81 0.00 40.13 1.94
782 880 0.809385 CCAGTGAAGAAGCATGGCAG 59.191 55.000 0.00 0.00 0.00 4.85
788 886 4.157289 AGTGAAGAAGCATGGCAGTTTATG 59.843 41.667 0.00 0.00 0.00 1.90
791 889 4.445452 AGAAGCATGGCAGTTTATGTTG 57.555 40.909 0.00 0.00 0.00 3.33
793 891 3.855689 AGCATGGCAGTTTATGTTGAC 57.144 42.857 0.00 0.00 0.00 3.18
794 892 2.493278 AGCATGGCAGTTTATGTTGACC 59.507 45.455 0.00 0.00 0.00 4.02
798 896 2.224426 TGGCAGTTTATGTTGACCGAGT 60.224 45.455 0.00 0.00 0.00 4.18
808 947 8.550376 GTTTATGTTGACCGAGTGTACTTTTTA 58.450 33.333 0.00 0.00 0.00 1.52
810 949 4.508861 TGTTGACCGAGTGTACTTTTTAGC 59.491 41.667 0.00 0.00 0.00 3.09
814 953 3.070590 ACCGAGTGTACTTTTTAGCCAGT 59.929 43.478 0.00 0.00 0.00 4.00
821 960 7.871853 AGTGTACTTTTTAGCCAGTATTTGTG 58.128 34.615 0.00 0.00 0.00 3.33
877 1028 2.217429 AAAAGCGTTTGATTTGCCGT 57.783 40.000 0.00 0.00 33.19 5.68
878 1029 1.766069 AAAGCGTTTGATTTGCCGTC 58.234 45.000 0.00 0.00 31.30 4.79
880 1031 0.889186 AGCGTTTGATTTGCCGTCCT 60.889 50.000 0.00 0.00 0.00 3.85
884 1035 2.724174 CGTTTGATTTGCCGTCCTTTTC 59.276 45.455 0.00 0.00 0.00 2.29
894 1045 1.219522 CGTCCTTTTCCAGCGAACGT 61.220 55.000 0.00 0.00 0.00 3.99
895 1046 0.234884 GTCCTTTTCCAGCGAACGTG 59.765 55.000 0.00 0.00 0.00 4.49
994 1647 0.179056 GGGGCATCGCAAGTAGCTAA 60.179 55.000 0.00 0.00 42.61 3.09
1036 1689 1.744114 GCATTTCCTCCCGTCTTCCTC 60.744 57.143 0.00 0.00 0.00 3.71
1205 1888 0.997932 CACTGCAGATCTCACGCTTC 59.002 55.000 23.35 0.00 0.00 3.86
1207 1890 0.179153 CTGCAGATCTCACGCTTCGA 60.179 55.000 8.42 0.00 0.00 3.71
1294 1978 0.323816 ATCTCTGCCGTCTCACCTGA 60.324 55.000 0.00 0.00 0.00 3.86
1374 2121 0.385390 AGGTTTTGCGCAGAACTTGG 59.615 50.000 33.98 0.00 0.00 3.61
1413 2172 5.968848 TGTTTGCAGTTTTACTAGCGAAAAG 59.031 36.000 3.92 0.00 31.97 2.27
1438 2199 0.374758 CTTCGGCCATGTGTTCGATG 59.625 55.000 2.24 0.00 0.00 3.84
1588 2350 7.730364 TTCTAAGAAAGAAAAACTCGATGCT 57.270 32.000 0.00 0.00 41.35 3.79
1600 2362 1.376424 CGATGCTGGCTGTCCTGTT 60.376 57.895 0.00 0.00 34.18 3.16
1601 2363 0.957395 CGATGCTGGCTGTCCTGTTT 60.957 55.000 0.00 0.00 34.18 2.83
1602 2364 0.524862 GATGCTGGCTGTCCTGTTTG 59.475 55.000 0.00 0.00 34.18 2.93
1603 2365 0.111061 ATGCTGGCTGTCCTGTTTGA 59.889 50.000 0.00 0.00 34.18 2.69
1604 2366 0.819259 TGCTGGCTGTCCTGTTTGAC 60.819 55.000 0.00 0.00 34.18 3.18
1605 2367 1.845809 GCTGGCTGTCCTGTTTGACG 61.846 60.000 0.00 0.00 38.11 4.35
1606 2368 0.532862 CTGGCTGTCCTGTTTGACGT 60.533 55.000 0.00 0.00 38.11 4.34
1607 2369 0.813610 TGGCTGTCCTGTTTGACGTG 60.814 55.000 0.00 0.00 38.11 4.49
1608 2370 0.814010 GGCTGTCCTGTTTGACGTGT 60.814 55.000 0.00 0.00 38.11 4.49
1609 2371 0.304705 GCTGTCCTGTTTGACGTGTG 59.695 55.000 0.00 0.00 38.11 3.82
1611 2373 2.816689 CTGTCCTGTTTGACGTGTGTA 58.183 47.619 0.00 0.00 38.11 2.90
1613 2375 2.427812 TGTCCTGTTTGACGTGTGTAGA 59.572 45.455 0.00 0.00 38.11 2.59
1614 2376 2.793232 GTCCTGTTTGACGTGTGTAGAC 59.207 50.000 0.00 0.00 0.00 2.59
1615 2377 2.427812 TCCTGTTTGACGTGTGTAGACA 59.572 45.455 0.00 0.00 0.00 3.41
1616 2378 2.794910 CCTGTTTGACGTGTGTAGACAG 59.205 50.000 0.00 0.00 34.59 3.51
1617 2379 2.198406 TGTTTGACGTGTGTAGACAGC 58.802 47.619 0.00 0.00 30.74 4.40
1618 2380 1.189446 GTTTGACGTGTGTAGACAGCG 59.811 52.381 0.00 11.48 34.67 5.18
1619 2381 0.937699 TTGACGTGTGTAGACAGCGC 60.938 55.000 0.00 0.00 32.94 5.92
1620 2382 2.049433 ACGTGTGTAGACAGCGCC 60.049 61.111 2.29 0.00 32.94 6.53
1621 2383 2.049526 CGTGTGTAGACAGCGCCA 60.050 61.111 2.29 0.00 30.74 5.69
1622 2384 1.663388 CGTGTGTAGACAGCGCCAA 60.663 57.895 2.29 0.00 30.74 4.52
1623 2385 1.617755 CGTGTGTAGACAGCGCCAAG 61.618 60.000 2.29 0.00 30.74 3.61
1624 2386 1.005037 TGTGTAGACAGCGCCAAGG 60.005 57.895 2.29 0.00 0.00 3.61
1625 2387 1.741770 GTGTAGACAGCGCCAAGGG 60.742 63.158 2.29 0.00 0.00 3.95
1626 2388 2.820037 GTAGACAGCGCCAAGGGC 60.820 66.667 2.29 0.00 46.75 5.19
1687 2455 2.880890 GTGTTGTCATCCTGTTCTTGCT 59.119 45.455 0.00 0.00 0.00 3.91
1695 2463 2.715046 TCCTGTTCTTGCTGCTAATGG 58.285 47.619 0.00 1.02 0.00 3.16
1944 3308 1.005215 AGCATAGCTCTTTGCCCTGTT 59.995 47.619 11.38 0.00 44.23 3.16
2152 3522 3.256383 TCCTGCAATGAAAACAGACATGG 59.744 43.478 0.00 0.00 33.10 3.66
2192 3562 3.642141 ACATTCAAAAGGGGTGACAGTT 58.358 40.909 0.00 0.00 0.00 3.16
2233 3603 5.061721 AGTGGGTTTGTCCTGTTCTAATT 57.938 39.130 0.00 0.00 36.25 1.40
2243 3613 3.254657 TCCTGTTCTAATTTTTGTGCCCG 59.745 43.478 0.00 0.00 0.00 6.13
2249 3619 0.467804 AATTTTTGTGCCCGCCTGTT 59.532 45.000 0.00 0.00 0.00 3.16
2395 3777 7.232534 GGTCTCTGTTCTAGGATATGAGTCAAT 59.767 40.741 0.00 0.00 0.00 2.57
2402 3784 9.030452 GTTCTAGGATATGAGTCAATGTCCTAT 57.970 37.037 21.96 6.67 44.64 2.57
2486 3868 6.768483 TGTTAACTGTGATCCAAGATCTCAA 58.232 36.000 7.22 0.00 0.00 3.02
2487 3869 6.875726 TGTTAACTGTGATCCAAGATCTCAAG 59.124 38.462 7.22 5.83 0.00 3.02
2489 3871 4.829968 ACTGTGATCCAAGATCTCAAGTG 58.170 43.478 0.00 0.00 0.00 3.16
2491 3873 5.189342 ACTGTGATCCAAGATCTCAAGTGAT 59.811 40.000 0.00 0.00 0.00 3.06
2498 3884 5.249163 TCCAAGATCTCAAGTGATCAAAGGA 59.751 40.000 12.88 12.48 43.76 3.36
2520 3906 5.788450 GAGGATTCTCCGATGTGTTGATAT 58.212 41.667 0.00 0.00 42.75 1.63
2522 3908 5.305386 AGGATTCTCCGATGTGTTGATATCA 59.695 40.000 0.00 0.00 42.75 2.15
2525 3911 5.188327 TCTCCGATGTGTTGATATCAGAC 57.812 43.478 5.39 7.63 0.00 3.51
2532 3918 6.145209 CGATGTGTTGATATCAGACATCTTCC 59.855 42.308 32.08 20.23 41.04 3.46
2534 3920 6.343703 TGTGTTGATATCAGACATCTTCCTG 58.656 40.000 17.77 0.00 0.00 3.86
3391 4810 1.271982 TGTACTCCGAAGAGCCAGAGT 60.272 52.381 0.00 0.00 44.65 3.24
4413 7330 2.128035 CAGGATAAGGATGTTCGTCGC 58.872 52.381 0.00 0.00 0.00 5.19
4630 7557 3.088194 TCAATCTACGTTACATCGGGC 57.912 47.619 0.00 0.00 34.94 6.13
5361 8294 5.003804 AGTGAGCTAAAAATCGTTGATGGT 58.996 37.500 0.00 0.00 0.00 3.55
5435 8368 1.079323 AGTCCCCCAAGGCATTGAATT 59.921 47.619 13.66 0.00 38.83 2.17
5436 8369 1.908619 GTCCCCCAAGGCATTGAATTT 59.091 47.619 13.66 0.00 38.83 1.82
5457 8390 3.362706 TCTTCGCTCCCTTAAGAAGCTA 58.637 45.455 20.58 11.84 39.72 3.32
5554 8487 2.425312 CCAGAGCTTCGTGTCTAGATGT 59.575 50.000 0.00 0.00 0.00 3.06
5562 8495 2.299013 TCGTGTCTAGATGTGGCAAGTT 59.701 45.455 0.00 0.00 0.00 2.66
5621 8572 0.036483 TCCAGCTGCATCGTGCTTTA 60.036 50.000 8.66 0.00 45.31 1.85
5658 8610 1.766069 TGCGATTATCGACATCACCG 58.234 50.000 19.40 0.00 43.74 4.94
5685 8637 6.366332 CAGCATTTGGTCGGTACTTCTATATC 59.634 42.308 0.00 0.00 0.00 1.63
5755 8714 1.337387 GAGGCCTCTGTACCGTATGTC 59.663 57.143 26.25 0.00 0.00 3.06
5973 8951 4.955811 TTTCAGTAGGTCATCTGTGTGT 57.044 40.909 0.00 0.00 33.89 3.72
5978 8956 5.758296 TCAGTAGGTCATCTGTGTGTTTTTC 59.242 40.000 0.00 0.00 33.89 2.29
5984 8962 0.466555 TCTGTGTGTTTTTCCCCGGG 60.467 55.000 15.80 15.80 0.00 5.73
5997 8975 2.358247 CCGGGTGTTCAGGTTCCG 60.358 66.667 0.00 0.00 40.32 4.30
6043 9021 9.927668 TCTCTTTCTTGTTTTTCATTTTCTGTT 57.072 25.926 0.00 0.00 0.00 3.16
6045 9023 9.927668 TCTTTCTTGTTTTTCATTTTCTGTTCT 57.072 25.926 0.00 0.00 0.00 3.01
6060 9038 5.679734 TCTGTTCTTTTCATCAGCACTTC 57.320 39.130 0.00 0.00 0.00 3.01
6064 9042 5.357878 TGTTCTTTTCATCAGCACTTCTGTT 59.642 36.000 0.00 0.00 43.32 3.16
6068 9046 5.581126 TTTCATCAGCACTTCTGTTGTTT 57.419 34.783 0.00 0.00 43.32 2.83
6069 9047 5.581126 TTCATCAGCACTTCTGTTGTTTT 57.419 34.783 0.00 0.00 43.32 2.43
6080 9058 6.091169 CACTTCTGTTGTTTTTGCATGTCTTT 59.909 34.615 0.00 0.00 0.00 2.52
6083 9061 7.094508 TCTGTTGTTTTTGCATGTCTTTAGA 57.905 32.000 0.00 0.00 0.00 2.10
6084 9062 6.972328 TCTGTTGTTTTTGCATGTCTTTAGAC 59.028 34.615 2.92 2.92 44.97 2.59
6090 9068 1.429148 GCATGTCTTTAGACCCGCCG 61.429 60.000 7.39 0.00 44.15 6.46
6123 9101 7.231722 ACGGAGCTAAATCAGTAGTATCATCTT 59.768 37.037 0.00 0.00 0.00 2.40
6124 9102 7.540400 CGGAGCTAAATCAGTAGTATCATCTTG 59.460 40.741 0.00 0.00 0.00 3.02
6125 9103 7.816995 GGAGCTAAATCAGTAGTATCATCTTGG 59.183 40.741 0.00 0.00 0.00 3.61
6126 9104 8.256356 AGCTAAATCAGTAGTATCATCTTGGT 57.744 34.615 0.00 0.00 0.00 3.67
6127 9105 8.709308 AGCTAAATCAGTAGTATCATCTTGGTT 58.291 33.333 0.00 0.00 0.00 3.67
6128 9106 8.983724 GCTAAATCAGTAGTATCATCTTGGTTC 58.016 37.037 0.00 0.00 0.00 3.62
6131 9109 9.553064 AAATCAGTAGTATCATCTTGGTTCATC 57.447 33.333 0.00 0.00 0.00 2.92
6132 9110 7.904558 TCAGTAGTATCATCTTGGTTCATCT 57.095 36.000 0.00 0.00 0.00 2.90
6133 9111 8.311395 TCAGTAGTATCATCTTGGTTCATCTT 57.689 34.615 0.00 0.00 0.00 2.40
6134 9112 9.421399 TCAGTAGTATCATCTTGGTTCATCTTA 57.579 33.333 0.00 0.00 0.00 2.10
6185 9163 6.963796 AGAACATGTTCTTTCTGTCATGAAC 58.036 36.000 31.06 5.11 46.95 3.18
6198 9176 3.884693 TGTCATGAACATGTGCTTTCTGT 59.115 39.130 5.18 0.00 39.72 3.41
6209 9187 8.743085 ACATGTGCTTTCTGTTCATATAGAAT 57.257 30.769 0.00 0.00 38.76 2.40
6237 9217 7.962964 AAAACACTTTCTGTCGATCTCAATA 57.037 32.000 0.00 0.00 30.29 1.90
6242 9222 6.199908 CACTTTCTGTCGATCTCAATACATCC 59.800 42.308 0.00 0.00 0.00 3.51
6268 9248 0.771127 TTAGGCCAAGAACCACAGCT 59.229 50.000 5.01 0.00 0.00 4.24
6291 9271 1.270625 TGTAGGAGTTCAACAAGGGCG 60.271 52.381 0.00 0.00 0.00 6.13
6303 9283 1.071699 ACAAGGGCGTTTTGCTAGAGA 59.928 47.619 0.00 0.00 45.43 3.10
6324 9304 7.961351 AGAGAATACAAGGATCGATCATCTTT 58.039 34.615 25.93 11.81 30.93 2.52
6356 9337 4.487714 TTGGACACTGAACTGTCTTCTT 57.512 40.909 0.00 0.00 40.50 2.52
6359 9340 3.561725 GGACACTGAACTGTCTTCTTTGG 59.438 47.826 0.00 0.00 40.50 3.28
6379 9360 3.131933 TGGCTGCAACAACTGTTTACAAT 59.868 39.130 0.50 0.00 35.83 2.71
6390 9371 6.255453 ACAACTGTTTACAATGTCACAATTGC 59.745 34.615 15.37 0.00 40.54 3.56
6454 9435 7.832187 TGGACTTCTTCCTTTACTGAAAAGAAA 59.168 33.333 0.00 0.00 46.44 2.52
6459 9440 8.871686 TCTTCCTTTACTGAAAAGAAAAATGC 57.128 30.769 0.00 0.00 46.44 3.56
6470 9451 7.194962 TGAAAAGAAAAATGCTTTCAAATGGC 58.805 30.769 0.00 0.00 34.68 4.40
6473 9454 6.887626 AGAAAAATGCTTTCAAATGGCAAT 57.112 29.167 0.00 0.00 39.46 3.56
6493 9474 5.221106 GCAATACTGCTTGGATATCAGCAAA 60.221 40.000 16.12 9.55 45.74 3.68
6494 9475 6.436261 CAATACTGCTTGGATATCAGCAAAG 58.564 40.000 16.12 9.77 36.81 2.77
6497 9478 5.012239 ACTGCTTGGATATCAGCAAAGAAA 58.988 37.500 16.12 0.00 36.81 2.52
6499 9480 6.154021 ACTGCTTGGATATCAGCAAAGAAATT 59.846 34.615 16.12 0.00 36.81 1.82
6550 9536 0.596577 CGACCACTGAAGACTCCGAA 59.403 55.000 0.00 0.00 0.00 4.30
6604 9590 1.154225 GATGTGGCGGTGAAAAGCG 60.154 57.895 0.00 0.00 0.00 4.68
6606 9592 0.960364 ATGTGGCGGTGAAAAGCGAT 60.960 50.000 0.95 0.00 0.00 4.58
6627 9613 9.178758 AGCGATAAGATTCCTTTGTATCTTTTT 57.821 29.630 0.00 0.00 38.85 1.94
6669 9655 7.087007 TGCATTTTTATCGTGTTTATGCAAGA 58.913 30.769 0.00 0.00 42.51 3.02
6699 9721 7.497249 ACTGTCTGGATATAAGCAAGAATTCAC 59.503 37.037 8.44 0.00 0.00 3.18
6701 9723 7.994911 TGTCTGGATATAAGCAAGAATTCACAT 59.005 33.333 8.44 0.00 0.00 3.21
6702 9724 8.844244 GTCTGGATATAAGCAAGAATTCACATT 58.156 33.333 8.44 0.00 0.00 2.71
6703 9725 8.843262 TCTGGATATAAGCAAGAATTCACATTG 58.157 33.333 8.44 4.95 0.00 2.82
6704 9726 8.523915 TGGATATAAGCAAGAATTCACATTGT 57.476 30.769 8.44 0.00 0.00 2.71
6705 9727 8.623903 TGGATATAAGCAAGAATTCACATTGTC 58.376 33.333 8.44 1.21 0.00 3.18
6706 9728 8.078596 GGATATAAGCAAGAATTCACATTGTCC 58.921 37.037 8.44 2.49 0.00 4.02
6707 9729 8.757982 ATATAAGCAAGAATTCACATTGTCCT 57.242 30.769 8.44 0.00 0.00 3.85
6715 9737 1.795768 TCACATTGTCCTCGAAGTGC 58.204 50.000 0.00 0.00 29.74 4.40
6719 9741 2.027745 ACATTGTCCTCGAAGTGCTCAT 60.028 45.455 0.00 0.00 0.00 2.90
6734 9756 0.522705 CTCATGCATGCAACTGCGAC 60.523 55.000 26.68 0.00 45.30 5.19
6735 9757 0.956902 TCATGCATGCAACTGCGACT 60.957 50.000 26.68 1.67 45.30 4.18
6737 9759 0.956902 ATGCATGCAACTGCGACTGA 60.957 50.000 26.68 0.00 45.30 3.41
6749 9771 0.171455 GCGACTGATGAAGACCTCGT 59.829 55.000 0.00 0.00 0.00 4.18
6762 9784 4.230314 AGACCTCGTGTTCATGATATCG 57.770 45.455 0.00 1.92 0.00 2.92
6772 9794 3.111853 TCATGATATCGTGTGGCTTCC 57.888 47.619 21.55 0.00 34.59 3.46
6777 9799 0.604073 TATCGTGTGGCTTCCGTCAA 59.396 50.000 0.00 0.00 0.00 3.18
6779 9801 0.250124 TCGTGTGGCTTCCGTCAAAT 60.250 50.000 0.00 0.00 0.00 2.32
6887 9909 1.321474 CCACTGTGCTTCAACCACAT 58.679 50.000 1.29 0.00 41.84 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.071778 AATGTGTGGGACTTTGCAGT 57.928 45.000 0.00 0.00 35.17 4.40
1 2 2.101249 ACAAATGTGTGGGACTTTGCAG 59.899 45.455 0.00 0.00 36.31 4.41
2 3 2.100584 GACAAATGTGTGGGACTTTGCA 59.899 45.455 0.00 0.00 38.41 4.08
3 4 2.362077 AGACAAATGTGTGGGACTTTGC 59.638 45.455 0.00 0.00 38.41 3.68
5 6 3.222603 GGAGACAAATGTGTGGGACTTT 58.777 45.455 0.00 0.00 38.41 2.66
6 7 2.810400 CGGAGACAAATGTGTGGGACTT 60.810 50.000 0.00 0.00 38.41 3.01
7 8 1.270839 CGGAGACAAATGTGTGGGACT 60.271 52.381 0.00 0.00 38.41 3.85
8 9 1.156736 CGGAGACAAATGTGTGGGAC 58.843 55.000 0.00 0.00 38.41 4.46
9 10 0.036164 CCGGAGACAAATGTGTGGGA 59.964 55.000 0.00 0.00 38.41 4.37
10 11 0.250727 ACCGGAGACAAATGTGTGGG 60.251 55.000 9.46 0.00 38.41 4.61
11 12 1.604604 AACCGGAGACAAATGTGTGG 58.395 50.000 9.46 0.00 38.41 4.17
12 13 2.858260 GCAAACCGGAGACAAATGTGTG 60.858 50.000 9.46 0.00 38.41 3.82
13 14 1.336755 GCAAACCGGAGACAAATGTGT 59.663 47.619 9.46 0.00 42.10 3.72
14 15 1.662876 CGCAAACCGGAGACAAATGTG 60.663 52.381 9.46 0.00 0.00 3.21
15 16 0.591170 CGCAAACCGGAGACAAATGT 59.409 50.000 9.46 0.00 0.00 2.71
16 17 3.383026 CGCAAACCGGAGACAAATG 57.617 52.632 9.46 0.00 0.00 2.32
26 27 1.082366 CGTTTTCTCCCGCAAACCG 60.082 57.895 0.00 0.00 30.37 4.44
27 28 0.317519 CACGTTTTCTCCCGCAAACC 60.318 55.000 0.00 0.00 30.37 3.27
28 29 0.379316 ACACGTTTTCTCCCGCAAAC 59.621 50.000 0.00 0.00 0.00 2.93
29 30 0.658897 GACACGTTTTCTCCCGCAAA 59.341 50.000 0.00 0.00 0.00 3.68
30 31 1.161563 GGACACGTTTTCTCCCGCAA 61.162 55.000 0.00 0.00 0.00 4.85
31 32 1.595929 GGACACGTTTTCTCCCGCA 60.596 57.895 0.00 0.00 0.00 5.69
32 33 2.664436 CGGACACGTTTTCTCCCGC 61.664 63.158 0.00 0.00 34.81 6.13
33 34 2.025418 CCGGACACGTTTTCTCCCG 61.025 63.158 0.00 0.00 38.78 5.14
34 35 0.947660 GTCCGGACACGTTTTCTCCC 60.948 60.000 29.75 0.00 38.78 4.30
35 36 0.947660 GGTCCGGACACGTTTTCTCC 60.948 60.000 34.40 10.81 38.78 3.71
36 37 1.280206 CGGTCCGGACACGTTTTCTC 61.280 60.000 34.40 13.68 38.78 2.87
37 38 1.300388 CGGTCCGGACACGTTTTCT 60.300 57.895 34.40 0.00 38.78 2.52
38 39 3.237290 CGGTCCGGACACGTTTTC 58.763 61.111 34.40 15.14 38.78 2.29
54 55 1.505353 GTCCTGACCGTACTGTCCG 59.495 63.158 14.01 8.20 34.25 4.79
55 56 1.239968 ACGTCCTGACCGTACTGTCC 61.240 60.000 14.01 0.00 36.65 4.02
56 57 0.595095 AACGTCCTGACCGTACTGTC 59.405 55.000 10.24 10.24 37.61 3.51
57 58 1.035139 AAACGTCCTGACCGTACTGT 58.965 50.000 0.00 0.00 37.61 3.55
58 59 1.415374 CAAACGTCCTGACCGTACTG 58.585 55.000 0.00 0.00 37.61 2.74
59 60 0.319297 GCAAACGTCCTGACCGTACT 60.319 55.000 1.95 0.00 37.61 2.73
60 61 1.611592 CGCAAACGTCCTGACCGTAC 61.612 60.000 1.95 0.00 37.61 3.67
61 62 1.372004 CGCAAACGTCCTGACCGTA 60.372 57.895 1.95 0.00 37.61 4.02
62 63 2.660552 CGCAAACGTCCTGACCGT 60.661 61.111 1.95 0.00 40.92 4.83
63 64 3.411351 CCGCAAACGTCCTGACCG 61.411 66.667 1.95 0.00 37.70 4.79
64 65 3.047877 CCCGCAAACGTCCTGACC 61.048 66.667 1.95 0.00 37.70 4.02
65 66 2.280592 ACCCGCAAACGTCCTGAC 60.281 61.111 1.95 0.00 37.70 3.51
66 67 2.029964 GACCCGCAAACGTCCTGA 59.970 61.111 1.95 0.00 37.70 3.86
67 68 3.411351 CGACCCGCAAACGTCCTG 61.411 66.667 0.00 0.00 37.70 3.86
68 69 4.675029 CCGACCCGCAAACGTCCT 62.675 66.667 0.00 0.00 37.70 3.85
73 74 4.676586 CAACGCCGACCCGCAAAC 62.677 66.667 0.00 0.00 0.00 2.93
78 79 4.143333 ATCTCCAACGCCGACCCG 62.143 66.667 0.00 0.00 0.00 5.28
79 80 2.511600 CATCTCCAACGCCGACCC 60.512 66.667 0.00 0.00 0.00 4.46
80 81 3.195698 GCATCTCCAACGCCGACC 61.196 66.667 0.00 0.00 0.00 4.79
81 82 3.195698 GGCATCTCCAACGCCGAC 61.196 66.667 0.00 0.00 35.79 4.79
84 85 0.815615 CTTAGGGCATCTCCAACGCC 60.816 60.000 0.00 0.00 45.47 5.68
85 86 0.107654 ACTTAGGGCATCTCCAACGC 60.108 55.000 0.00 0.00 36.21 4.84
86 87 2.693591 TCTACTTAGGGCATCTCCAACG 59.306 50.000 0.00 0.00 36.21 4.10
87 88 3.451178 TGTCTACTTAGGGCATCTCCAAC 59.549 47.826 0.00 0.00 36.21 3.77
88 89 3.719871 TGTCTACTTAGGGCATCTCCAA 58.280 45.455 0.00 0.00 36.21 3.53
89 90 3.398318 TGTCTACTTAGGGCATCTCCA 57.602 47.619 0.00 0.00 36.21 3.86
90 91 3.707102 AGTTGTCTACTTAGGGCATCTCC 59.293 47.826 0.00 0.00 31.29 3.71
91 92 5.346181 AAGTTGTCTACTTAGGGCATCTC 57.654 43.478 0.00 0.00 45.22 2.75
92 93 5.338463 GGAAAGTTGTCTACTTAGGGCATCT 60.338 44.000 0.00 0.00 46.34 2.90
93 94 4.876679 GGAAAGTTGTCTACTTAGGGCATC 59.123 45.833 0.00 0.00 46.34 3.91
94 95 4.288626 TGGAAAGTTGTCTACTTAGGGCAT 59.711 41.667 0.00 0.00 46.34 4.40
95 96 3.649023 TGGAAAGTTGTCTACTTAGGGCA 59.351 43.478 0.00 0.00 46.34 5.36
96 97 4.281898 TGGAAAGTTGTCTACTTAGGGC 57.718 45.455 0.00 0.00 46.34 5.19
97 98 7.761038 AAAATGGAAAGTTGTCTACTTAGGG 57.239 36.000 0.00 0.00 46.34 3.53
102 103 9.167311 CAGCTATAAAATGGAAAGTTGTCTACT 57.833 33.333 0.00 0.00 39.32 2.57
103 104 8.398665 CCAGCTATAAAATGGAAAGTTGTCTAC 58.601 37.037 0.00 0.00 36.09 2.59
104 105 7.556275 CCCAGCTATAAAATGGAAAGTTGTCTA 59.444 37.037 0.00 0.00 36.09 2.59
105 106 6.378280 CCCAGCTATAAAATGGAAAGTTGTCT 59.622 38.462 0.00 0.00 36.09 3.41
106 107 6.564328 CCCAGCTATAAAATGGAAAGTTGTC 58.436 40.000 0.00 0.00 36.09 3.18
107 108 5.105351 GCCCAGCTATAAAATGGAAAGTTGT 60.105 40.000 0.00 0.00 36.09 3.32
108 109 5.105392 TGCCCAGCTATAAAATGGAAAGTTG 60.105 40.000 0.00 0.00 36.09 3.16
109 110 5.022787 TGCCCAGCTATAAAATGGAAAGTT 58.977 37.500 0.00 0.00 36.09 2.66
110 111 4.609301 TGCCCAGCTATAAAATGGAAAGT 58.391 39.130 0.00 0.00 36.09 2.66
111 112 5.535333 CATGCCCAGCTATAAAATGGAAAG 58.465 41.667 0.00 0.00 36.09 2.62
112 113 4.202243 GCATGCCCAGCTATAAAATGGAAA 60.202 41.667 6.36 0.00 36.09 3.13
113 114 3.321682 GCATGCCCAGCTATAAAATGGAA 59.678 43.478 6.36 0.00 36.09 3.53
114 115 2.892852 GCATGCCCAGCTATAAAATGGA 59.107 45.455 6.36 0.00 36.09 3.41
115 116 2.352030 CGCATGCCCAGCTATAAAATGG 60.352 50.000 13.15 0.00 0.00 3.16
116 117 2.553602 TCGCATGCCCAGCTATAAAATG 59.446 45.455 13.15 0.00 0.00 2.32
117 118 2.816087 CTCGCATGCCCAGCTATAAAAT 59.184 45.455 13.15 0.00 0.00 1.82
118 119 2.221169 CTCGCATGCCCAGCTATAAAA 58.779 47.619 13.15 0.00 0.00 1.52
119 120 1.140852 ACTCGCATGCCCAGCTATAAA 59.859 47.619 13.15 0.00 0.00 1.40
120 121 0.758734 ACTCGCATGCCCAGCTATAA 59.241 50.000 13.15 0.00 0.00 0.98
121 122 1.627864 TACTCGCATGCCCAGCTATA 58.372 50.000 13.15 0.00 0.00 1.31
122 123 0.979665 ATACTCGCATGCCCAGCTAT 59.020 50.000 13.15 6.40 0.00 2.97
123 124 1.627864 TATACTCGCATGCCCAGCTA 58.372 50.000 13.15 4.47 0.00 3.32
124 125 0.758734 TTATACTCGCATGCCCAGCT 59.241 50.000 13.15 2.53 0.00 4.24
125 126 1.593196 TTTATACTCGCATGCCCAGC 58.407 50.000 13.15 0.00 0.00 4.85
126 127 3.002656 CACTTTTATACTCGCATGCCCAG 59.997 47.826 13.15 10.93 0.00 4.45
127 128 2.942376 CACTTTTATACTCGCATGCCCA 59.058 45.455 13.15 0.00 0.00 5.36
128 129 2.943033 ACACTTTTATACTCGCATGCCC 59.057 45.455 13.15 0.00 0.00 5.36
129 130 4.809426 ACTACACTTTTATACTCGCATGCC 59.191 41.667 13.15 0.00 0.00 4.40
130 131 5.968387 ACTACACTTTTATACTCGCATGC 57.032 39.130 7.91 7.91 0.00 4.06
131 132 9.297586 TCTAAACTACACTTTTATACTCGCATG 57.702 33.333 0.00 0.00 0.00 4.06
132 133 9.865321 TTCTAAACTACACTTTTATACTCGCAT 57.135 29.630 0.00 0.00 0.00 4.73
133 134 9.865321 ATTCTAAACTACACTTTTATACTCGCA 57.135 29.630 0.00 0.00 0.00 5.10
143 144 8.669243 GCAGCAGATAATTCTAAACTACACTTT 58.331 33.333 0.00 0.00 0.00 2.66
144 145 7.824289 TGCAGCAGATAATTCTAAACTACACTT 59.176 33.333 0.00 0.00 0.00 3.16
145 146 7.278868 GTGCAGCAGATAATTCTAAACTACACT 59.721 37.037 0.00 0.00 29.08 3.55
146 147 7.064609 TGTGCAGCAGATAATTCTAAACTACAC 59.935 37.037 0.00 0.00 30.66 2.90
147 148 7.102993 TGTGCAGCAGATAATTCTAAACTACA 58.897 34.615 0.00 0.00 0.00 2.74
148 149 7.539712 TGTGCAGCAGATAATTCTAAACTAC 57.460 36.000 0.00 0.00 0.00 2.73
149 150 8.560355 TTTGTGCAGCAGATAATTCTAAACTA 57.440 30.769 0.00 0.00 0.00 2.24
150 151 7.452880 TTTGTGCAGCAGATAATTCTAAACT 57.547 32.000 0.00 0.00 0.00 2.66
151 152 7.970061 TGATTTGTGCAGCAGATAATTCTAAAC 59.030 33.333 0.00 0.00 0.00 2.01
152 153 8.054152 TGATTTGTGCAGCAGATAATTCTAAA 57.946 30.769 0.00 0.00 0.00 1.85
153 154 7.628769 TGATTTGTGCAGCAGATAATTCTAA 57.371 32.000 0.00 0.00 0.00 2.10
154 155 7.121020 TGTTGATTTGTGCAGCAGATAATTCTA 59.879 33.333 0.00 0.00 0.00 2.10
155 156 6.071784 TGTTGATTTGTGCAGCAGATAATTCT 60.072 34.615 0.00 0.00 0.00 2.40
156 157 6.094719 TGTTGATTTGTGCAGCAGATAATTC 58.905 36.000 0.00 0.00 0.00 2.17
157 158 6.028146 TGTTGATTTGTGCAGCAGATAATT 57.972 33.333 0.00 0.00 0.00 1.40
158 159 5.648178 TGTTGATTTGTGCAGCAGATAAT 57.352 34.783 0.00 0.00 0.00 1.28
159 160 5.416639 AGATGTTGATTTGTGCAGCAGATAA 59.583 36.000 0.00 0.00 30.11 1.75
160 161 4.945543 AGATGTTGATTTGTGCAGCAGATA 59.054 37.500 0.00 0.00 30.11 1.98
161 162 3.762288 AGATGTTGATTTGTGCAGCAGAT 59.238 39.130 0.00 0.00 30.11 2.90
162 163 3.151554 AGATGTTGATTTGTGCAGCAGA 58.848 40.909 0.00 0.00 30.11 4.26
163 164 3.057806 TGAGATGTTGATTTGTGCAGCAG 60.058 43.478 0.00 0.00 30.11 4.24
164 165 2.885894 TGAGATGTTGATTTGTGCAGCA 59.114 40.909 0.00 0.00 0.00 4.41
165 166 3.057736 AGTGAGATGTTGATTTGTGCAGC 60.058 43.478 0.00 0.00 0.00 5.25
166 167 4.761235 AGTGAGATGTTGATTTGTGCAG 57.239 40.909 0.00 0.00 0.00 4.41
167 168 5.507817 GGAAAGTGAGATGTTGATTTGTGCA 60.508 40.000 0.00 0.00 0.00 4.57
168 169 4.919754 GGAAAGTGAGATGTTGATTTGTGC 59.080 41.667 0.00 0.00 0.00 4.57
169 170 6.016860 TCAGGAAAGTGAGATGTTGATTTGTG 60.017 38.462 0.00 0.00 0.00 3.33
170 171 6.064060 TCAGGAAAGTGAGATGTTGATTTGT 58.936 36.000 0.00 0.00 0.00 2.83
171 172 6.564709 TCAGGAAAGTGAGATGTTGATTTG 57.435 37.500 0.00 0.00 0.00 2.32
172 173 7.587037 TTTCAGGAAAGTGAGATGTTGATTT 57.413 32.000 0.00 0.00 0.00 2.17
173 174 7.587037 TTTTCAGGAAAGTGAGATGTTGATT 57.413 32.000 0.00 0.00 0.00 2.57
174 175 7.771927 ATTTTCAGGAAAGTGAGATGTTGAT 57.228 32.000 0.00 0.00 0.00 2.57
175 176 7.587037 AATTTTCAGGAAAGTGAGATGTTGA 57.413 32.000 0.00 0.00 0.00 3.18
176 177 9.918630 ATTAATTTTCAGGAAAGTGAGATGTTG 57.081 29.630 0.00 0.00 0.00 3.33
178 179 9.525826 AGATTAATTTTCAGGAAAGTGAGATGT 57.474 29.630 0.00 0.00 0.00 3.06
181 182 9.573166 TGAAGATTAATTTTCAGGAAAGTGAGA 57.427 29.630 15.44 0.00 0.00 3.27
183 184 9.965824 GTTGAAGATTAATTTTCAGGAAAGTGA 57.034 29.630 17.84 2.54 35.01 3.41
184 185 9.196552 GGTTGAAGATTAATTTTCAGGAAAGTG 57.803 33.333 17.84 0.00 35.01 3.16
185 186 8.367911 GGGTTGAAGATTAATTTTCAGGAAAGT 58.632 33.333 17.84 0.00 35.01 2.66
186 187 8.588472 AGGGTTGAAGATTAATTTTCAGGAAAG 58.412 33.333 17.84 0.00 35.01 2.62
187 188 8.491045 AGGGTTGAAGATTAATTTTCAGGAAA 57.509 30.769 17.84 4.64 35.01 3.13
188 189 9.768215 ATAGGGTTGAAGATTAATTTTCAGGAA 57.232 29.630 17.84 4.94 35.01 3.36
197 198 9.301897 GCAGGATTTATAGGGTTGAAGATTAAT 57.698 33.333 0.00 0.00 0.00 1.40
198 199 7.724061 GGCAGGATTTATAGGGTTGAAGATTAA 59.276 37.037 0.00 0.00 0.00 1.40
199 200 7.147213 TGGCAGGATTTATAGGGTTGAAGATTA 60.147 37.037 0.00 0.00 0.00 1.75
200 201 6.071320 GGCAGGATTTATAGGGTTGAAGATT 58.929 40.000 0.00 0.00 0.00 2.40
201 202 5.134339 TGGCAGGATTTATAGGGTTGAAGAT 59.866 40.000 0.00 0.00 0.00 2.40
202 203 4.476846 TGGCAGGATTTATAGGGTTGAAGA 59.523 41.667 0.00 0.00 0.00 2.87
203 204 4.580580 GTGGCAGGATTTATAGGGTTGAAG 59.419 45.833 0.00 0.00 0.00 3.02
204 205 4.532834 GTGGCAGGATTTATAGGGTTGAA 58.467 43.478 0.00 0.00 0.00 2.69
205 206 3.117663 GGTGGCAGGATTTATAGGGTTGA 60.118 47.826 0.00 0.00 0.00 3.18
206 207 3.222603 GGTGGCAGGATTTATAGGGTTG 58.777 50.000 0.00 0.00 0.00 3.77
207 208 2.158667 CGGTGGCAGGATTTATAGGGTT 60.159 50.000 0.00 0.00 0.00 4.11
208 209 1.420138 CGGTGGCAGGATTTATAGGGT 59.580 52.381 0.00 0.00 0.00 4.34
209 210 1.420138 ACGGTGGCAGGATTTATAGGG 59.580 52.381 0.00 0.00 0.00 3.53
210 211 2.930826 ACGGTGGCAGGATTTATAGG 57.069 50.000 0.00 0.00 0.00 2.57
211 212 3.326747 GCTACGGTGGCAGGATTTATAG 58.673 50.000 11.90 0.00 0.00 1.31
212 213 2.038033 GGCTACGGTGGCAGGATTTATA 59.962 50.000 18.37 0.00 0.00 0.98
213 214 1.202770 GGCTACGGTGGCAGGATTTAT 60.203 52.381 18.37 0.00 0.00 1.40
214 215 0.179468 GGCTACGGTGGCAGGATTTA 59.821 55.000 18.37 0.00 0.00 1.40
223 224 5.850614 AGTAACTAATTATGGCTACGGTGG 58.149 41.667 0.00 0.00 0.00 4.61
276 277 6.364165 TCGCACTACAACTTACATAGAACAAC 59.636 38.462 0.00 0.00 0.00 3.32
292 295 3.998341 GGTGGAAAATTAGTCGCACTACA 59.002 43.478 0.00 0.00 28.93 2.74
293 296 3.373130 GGGTGGAAAATTAGTCGCACTAC 59.627 47.826 0.00 0.00 28.93 2.73
304 307 4.769345 TTTCTTTGCAGGGTGGAAAATT 57.231 36.364 0.00 0.00 37.24 1.82
305 308 4.980339 ATTTCTTTGCAGGGTGGAAAAT 57.020 36.364 0.00 0.00 37.24 1.82
310 313 4.314961 GGTTTTATTTCTTTGCAGGGTGG 58.685 43.478 0.00 0.00 0.00 4.61
313 316 4.513198 TCGGTTTTATTTCTTTGCAGGG 57.487 40.909 0.00 0.00 0.00 4.45
318 322 7.083858 TCAGAAGCATCGGTTTTATTTCTTTG 58.916 34.615 0.00 0.00 0.00 2.77
328 332 2.972625 TCGATTCAGAAGCATCGGTTT 58.027 42.857 0.00 0.00 40.54 3.27
336 340 4.935885 AGAACACATTCGATTCAGAAGC 57.064 40.909 0.00 0.00 40.04 3.86
342 347 6.740002 CACATTCAGAAGAACACATTCGATTC 59.260 38.462 0.00 0.00 40.04 2.52
343 348 6.348786 CCACATTCAGAAGAACACATTCGATT 60.349 38.462 0.00 0.00 40.04 3.34
347 352 5.947228 TCCACATTCAGAAGAACACATTC 57.053 39.130 0.00 0.00 36.39 2.67
377 382 8.373981 CACCTATCATGGTCATAGATTCTTCTT 58.626 37.037 0.00 0.00 38.45 2.52
408 413 6.831976 ACCTGCATAAATTCCCTCTAAGTAG 58.168 40.000 0.00 0.00 0.00 2.57
412 417 8.058847 ACAATAACCTGCATAAATTCCCTCTAA 58.941 33.333 0.00 0.00 0.00 2.10
434 439 4.269183 TGGAGTTGCCATAATTCGACAAT 58.731 39.130 0.00 0.00 43.33 2.71
435 440 3.680490 TGGAGTTGCCATAATTCGACAA 58.320 40.909 0.00 0.00 43.33 3.18
452 535 4.082571 CCAATAAAAGCAACTCTGGTGGAG 60.083 45.833 0.00 0.00 46.87 3.86
482 565 4.941263 ACGCCAATAAGAGCACATCTAAAA 59.059 37.500 0.00 0.00 37.23 1.52
483 566 4.513442 ACGCCAATAAGAGCACATCTAAA 58.487 39.130 0.00 0.00 37.23 1.85
484 567 4.137116 ACGCCAATAAGAGCACATCTAA 57.863 40.909 0.00 0.00 37.23 2.10
511 594 6.906157 AAGATTCTTCTCCAATTTCAGCAA 57.094 33.333 0.00 0.00 0.00 3.91
589 672 3.043418 ACCTAATTATGGCTACGGTGGT 58.957 45.455 0.00 0.00 0.00 4.16
590 673 3.764237 ACCTAATTATGGCTACGGTGG 57.236 47.619 0.00 0.00 0.00 4.61
591 674 4.563061 GGTACCTAATTATGGCTACGGTG 58.437 47.826 4.06 0.00 0.00 4.94
592 675 3.256631 CGGTACCTAATTATGGCTACGGT 59.743 47.826 10.90 0.00 0.00 4.83
593 676 3.841643 CGGTACCTAATTATGGCTACGG 58.158 50.000 10.90 0.00 0.00 4.02
594 677 3.057033 AGCGGTACCTAATTATGGCTACG 60.057 47.826 10.90 0.00 0.00 3.51
595 678 4.243270 CAGCGGTACCTAATTATGGCTAC 58.757 47.826 10.90 0.00 0.00 3.58
596 679 3.306502 GCAGCGGTACCTAATTATGGCTA 60.307 47.826 10.90 0.00 0.00 3.93
597 680 2.550208 GCAGCGGTACCTAATTATGGCT 60.550 50.000 10.90 5.57 0.00 4.75
598 681 1.804748 GCAGCGGTACCTAATTATGGC 59.195 52.381 10.90 3.04 0.00 4.40
599 682 2.224426 TGGCAGCGGTACCTAATTATGG 60.224 50.000 10.90 0.00 0.00 2.74
600 683 3.067106 CTGGCAGCGGTACCTAATTATG 58.933 50.000 10.90 0.81 0.00 1.90
601 684 2.550208 GCTGGCAGCGGTACCTAATTAT 60.550 50.000 25.47 0.00 0.00 1.28
602 685 1.202604 GCTGGCAGCGGTACCTAATTA 60.203 52.381 25.47 0.00 0.00 1.40
603 686 0.463833 GCTGGCAGCGGTACCTAATT 60.464 55.000 25.47 0.00 0.00 1.40
604 687 1.146263 GCTGGCAGCGGTACCTAAT 59.854 57.895 25.47 0.00 0.00 1.73
605 688 2.582436 GCTGGCAGCGGTACCTAA 59.418 61.111 25.47 0.00 0.00 2.69
606 689 3.467226 GGCTGGCAGCGGTACCTA 61.467 66.667 31.22 0.00 43.62 3.08
650 733 4.213482 GCCGTCAGACTTGTCAAAGTTTAT 59.787 41.667 0.00 0.00 46.84 1.40
653 736 1.940613 GCCGTCAGACTTGTCAAAGTT 59.059 47.619 0.00 0.00 46.84 2.66
668 751 3.479269 CTTCGCGTCTTGGCCGTC 61.479 66.667 5.77 0.00 0.00 4.79
682 767 5.290158 TGTGAATATAAAAGACCGCGACTTC 59.710 40.000 8.23 0.00 0.00 3.01
707 792 4.464112 GAGCCGTCTTGTTGTGTTATTTC 58.536 43.478 0.00 0.00 0.00 2.17
718 803 2.651361 CAGGTCGAGCCGTCTTGT 59.349 61.111 11.73 0.00 43.70 3.16
767 865 4.081406 ACATAAACTGCCATGCTTCTTCA 58.919 39.130 0.00 0.00 0.00 3.02
770 868 4.081406 TCAACATAAACTGCCATGCTTCT 58.919 39.130 0.00 0.00 0.00 2.85
782 880 6.535274 AAAGTACACTCGGTCAACATAAAC 57.465 37.500 0.00 0.00 0.00 2.01
788 886 4.084171 GGCTAAAAAGTACACTCGGTCAAC 60.084 45.833 0.00 0.00 0.00 3.18
791 889 3.656559 TGGCTAAAAAGTACACTCGGTC 58.343 45.455 0.00 0.00 0.00 4.79
793 891 3.660865 ACTGGCTAAAAAGTACACTCGG 58.339 45.455 0.00 0.00 0.00 4.63
794 892 6.963049 AATACTGGCTAAAAAGTACACTCG 57.037 37.500 0.00 0.00 31.93 4.18
798 896 6.773685 ACCACAAATACTGGCTAAAAAGTACA 59.226 34.615 0.00 0.00 31.93 2.90
808 947 4.367039 ACAAGTACCACAAATACTGGCT 57.633 40.909 0.00 0.00 33.11 4.75
810 949 7.739498 AGTTTACAAGTACCACAAATACTGG 57.261 36.000 0.00 0.00 33.11 4.00
857 1008 2.538037 GACGGCAAATCAAACGCTTTTT 59.462 40.909 0.00 0.00 0.00 1.94
862 1013 0.039527 AAGGACGGCAAATCAAACGC 60.040 50.000 0.00 0.00 0.00 4.84
868 1019 1.402852 GCTGGAAAAGGACGGCAAATC 60.403 52.381 0.00 0.00 38.81 2.17
875 1026 1.219522 ACGTTCGCTGGAAAAGGACG 61.220 55.000 0.00 0.00 33.05 4.79
876 1027 0.234884 CACGTTCGCTGGAAAAGGAC 59.765 55.000 0.00 0.00 33.05 3.85
877 1028 0.105224 TCACGTTCGCTGGAAAAGGA 59.895 50.000 0.00 0.00 33.05 3.36
878 1029 0.512952 CTCACGTTCGCTGGAAAAGG 59.487 55.000 0.00 0.00 33.05 3.11
880 1031 0.531974 AGCTCACGTTCGCTGGAAAA 60.532 50.000 7.49 0.00 34.69 2.29
937 1295 1.148157 CCCTCACGCAATCACGCTAG 61.148 60.000 0.00 0.00 36.19 3.42
994 1647 1.672356 GAGTGCAATCAGTGGGCGT 60.672 57.895 9.72 0.00 0.00 5.68
1240 1923 1.313091 GGGAGCCACGAATTTGACCC 61.313 60.000 0.00 0.00 0.00 4.46
1241 1924 0.608035 TGGGAGCCACGAATTTGACC 60.608 55.000 0.00 0.00 0.00 4.02
1374 2121 5.046910 TGCAAACAACTATCTAAGCTTGC 57.953 39.130 9.86 0.00 0.00 4.01
1413 2172 0.889186 ACACATGGCCGAAGACAACC 60.889 55.000 0.00 0.00 0.00 3.77
1459 2220 0.388294 CTCTCTCTGCCATGCATCGA 59.612 55.000 0.00 0.00 38.13 3.59
1462 2223 1.689813 CTCTCTCTCTCTGCCATGCAT 59.310 52.381 0.00 0.00 38.13 3.96
1463 2224 1.112950 CTCTCTCTCTCTGCCATGCA 58.887 55.000 0.00 0.00 36.92 3.96
1464 2225 1.338973 CTCTCTCTCTCTCTGCCATGC 59.661 57.143 0.00 0.00 0.00 4.06
1466 2227 2.779430 TCTCTCTCTCTCTCTCTGCCAT 59.221 50.000 0.00 0.00 0.00 4.40
1467 2228 2.171237 CTCTCTCTCTCTCTCTCTGCCA 59.829 54.545 0.00 0.00 0.00 4.92
1469 2230 2.216898 GCTCTCTCTCTCTCTCTCTGC 58.783 57.143 0.00 0.00 0.00 4.26
1470 2231 3.548745 TGCTCTCTCTCTCTCTCTCTG 57.451 52.381 0.00 0.00 0.00 3.35
1471 2232 4.904251 ACTATGCTCTCTCTCTCTCTCTCT 59.096 45.833 0.00 0.00 0.00 3.10
1588 2350 0.813610 CACGTCAAACAGGACAGCCA 60.814 55.000 0.00 0.00 37.66 4.75
1600 2362 0.937699 GCGCTGTCTACACACGTCAA 60.938 55.000 0.00 0.00 32.75 3.18
1601 2363 1.371267 GCGCTGTCTACACACGTCA 60.371 57.895 0.00 0.00 32.75 4.35
1602 2364 2.087009 GGCGCTGTCTACACACGTC 61.087 63.158 7.64 0.00 32.75 4.34
1603 2365 2.049433 GGCGCTGTCTACACACGT 60.049 61.111 7.64 0.00 32.75 4.49
1604 2366 1.617755 CTTGGCGCTGTCTACACACG 61.618 60.000 7.64 0.00 33.09 4.49
1605 2367 1.291877 CCTTGGCGCTGTCTACACAC 61.292 60.000 7.64 0.00 0.00 3.82
1606 2368 1.005037 CCTTGGCGCTGTCTACACA 60.005 57.895 7.64 0.00 0.00 3.72
1607 2369 1.741770 CCCTTGGCGCTGTCTACAC 60.742 63.158 7.64 0.00 0.00 2.90
1608 2370 2.662596 CCCTTGGCGCTGTCTACA 59.337 61.111 7.64 0.00 0.00 2.74
1609 2371 2.820037 GCCCTTGGCGCTGTCTAC 60.820 66.667 7.64 0.00 39.62 2.59
1626 2388 4.792068 TGAATAAGATTAGCCACCTTGGG 58.208 43.478 0.00 0.00 38.19 4.12
1944 3308 6.989169 AGCTAATTTAACACATTTGGCAAACA 59.011 30.769 16.00 0.00 0.00 2.83
2169 3539 4.142038 ACTGTCACCCCTTTTGAATGTAC 58.858 43.478 0.00 0.00 0.00 2.90
2192 3562 4.523173 CCACTAGGCTAGAACGAATATCCA 59.477 45.833 27.59 0.00 0.00 3.41
2233 3603 1.271102 GAATAACAGGCGGGCACAAAA 59.729 47.619 3.78 0.00 0.00 2.44
2276 3654 9.872721 AAGTAGAAGTACCTAGCAGAATAAAAC 57.127 33.333 0.00 0.00 0.00 2.43
2280 3659 7.618512 ACCAAAGTAGAAGTACCTAGCAGAATA 59.381 37.037 0.00 0.00 0.00 1.75
2317 3697 3.425162 AGGTTCAGTCCAATTCACTCC 57.575 47.619 0.00 0.00 0.00 3.85
2395 3777 6.826231 TCGAATTTGGAAAGCATTATAGGACA 59.174 34.615 0.00 0.00 0.00 4.02
2402 3784 4.157656 CCCAGTCGAATTTGGAAAGCATTA 59.842 41.667 12.15 0.00 36.55 1.90
2507 3893 6.145209 GGAAGATGTCTGATATCAACACATCG 59.855 42.308 30.09 12.85 43.79 3.84
2514 3900 5.619132 TGCAGGAAGATGTCTGATATCAA 57.381 39.130 15.45 0.00 33.11 2.57
2520 3906 5.619132 TTATCATGCAGGAAGATGTCTGA 57.381 39.130 4.62 0.00 33.11 3.27
2650 4046 6.026513 ACTCGTACGTAAAGAGTAGCATTTC 58.973 40.000 24.71 0.00 42.71 2.17
3254 4673 1.822990 TCTCAGTAAGTGGGTTAGCGG 59.177 52.381 0.00 0.00 0.00 5.52
3750 5176 2.511600 GCGACATGGTCCTTCCGG 60.512 66.667 0.00 0.00 39.52 5.14
3849 5275 0.885879 GGCCCTTCCGGTTGTAAAAG 59.114 55.000 0.00 0.00 0.00 2.27
4413 7330 5.297776 GTCTTTCCATCCACATAATGACAGG 59.702 44.000 0.00 0.00 0.00 4.00
4630 7557 2.813908 GACCTTGGTGCGCCGTAG 60.814 66.667 12.58 11.34 37.67 3.51
5185 8112 0.034089 CCCAGTGGATCTTCCCCAAC 60.034 60.000 11.95 0.00 35.03 3.77
5361 8294 1.683938 CCATCAATGCAGGGAAGAGCA 60.684 52.381 0.00 0.00 45.92 4.26
5435 8368 2.567615 AGCTTCTTAAGGGAGCGAAGAA 59.432 45.455 19.31 0.00 36.97 2.52
5436 8369 2.180276 AGCTTCTTAAGGGAGCGAAGA 58.820 47.619 19.31 0.00 35.97 2.87
5554 8487 1.408702 GCAGAAAGAACCAACTTGCCA 59.591 47.619 0.00 0.00 0.00 4.92
5562 8495 0.106769 TGGCACTGCAGAAAGAACCA 60.107 50.000 23.35 14.43 0.00 3.67
5658 8610 0.676782 AGTACCGACCAAATGCTGCC 60.677 55.000 0.00 0.00 0.00 4.85
5685 8637 8.657074 TCCTTGAGGAATATAAATGTGTTACG 57.343 34.615 0.00 0.00 42.18 3.18
5972 8950 0.671796 CTGAACACCCGGGGAAAAAC 59.328 55.000 27.92 11.37 0.00 2.43
5973 8951 0.468400 CCTGAACACCCGGGGAAAAA 60.468 55.000 27.92 6.34 0.00 1.94
5978 8956 2.033602 GAACCTGAACACCCGGGG 59.966 66.667 27.92 16.65 36.89 5.73
5984 8962 4.274950 TCTGAAATTTCGGAACCTGAACAC 59.725 41.667 24.32 0.00 39.51 3.32
6039 9017 5.686159 AGAAGTGCTGATGAAAAGAACAG 57.314 39.130 0.00 0.00 0.00 3.16
6041 9019 5.684626 CAACAGAAGTGCTGATGAAAAGAAC 59.315 40.000 4.69 0.00 46.88 3.01
6043 9021 4.883585 ACAACAGAAGTGCTGATGAAAAGA 59.116 37.500 15.02 0.00 46.88 2.52
6044 9022 5.179045 ACAACAGAAGTGCTGATGAAAAG 57.821 39.130 15.02 0.00 46.88 2.27
6045 9023 5.581126 AACAACAGAAGTGCTGATGAAAA 57.419 34.783 15.02 0.00 46.88 2.29
6046 9024 5.581126 AAACAACAGAAGTGCTGATGAAA 57.419 34.783 15.02 0.00 46.88 2.69
6047 9025 5.581126 AAAACAACAGAAGTGCTGATGAA 57.419 34.783 15.02 0.00 46.88 2.57
6048 9026 5.342433 CAAAAACAACAGAAGTGCTGATGA 58.658 37.500 15.02 0.00 46.88 2.92
6060 9038 6.198966 GGTCTAAAGACATGCAAAAACAACAG 59.801 38.462 11.98 0.00 46.47 3.16
6064 9042 4.261405 CGGGTCTAAAGACATGCAAAAACA 60.261 41.667 11.98 0.00 46.47 2.83
6068 9046 1.810151 GCGGGTCTAAAGACATGCAAA 59.190 47.619 16.37 0.00 46.47 3.68
6069 9047 1.448985 GCGGGTCTAAAGACATGCAA 58.551 50.000 16.37 0.00 46.47 4.08
6080 9058 1.471327 CCGTTAAAATCGGCGGGTCTA 60.471 52.381 7.21 0.00 41.48 2.59
6083 9061 0.741927 CTCCGTTAAAATCGGCGGGT 60.742 55.000 7.21 0.00 46.49 5.28
6084 9062 2.011453 CTCCGTTAAAATCGGCGGG 58.989 57.895 7.21 0.00 46.49 6.13
6090 9068 8.421673 ACTACTGATTTAGCTCCGTTAAAATC 57.578 34.615 9.49 9.49 38.32 2.17
6123 9101 5.817296 GTCACACAGCATATAAGATGAACCA 59.183 40.000 0.00 0.00 0.00 3.67
6124 9102 5.817296 TGTCACACAGCATATAAGATGAACC 59.183 40.000 0.00 0.00 0.00 3.62
6125 9103 6.313658 TGTGTCACACAGCATATAAGATGAAC 59.686 38.462 6.50 0.00 39.62 3.18
6126 9104 6.405538 TGTGTCACACAGCATATAAGATGAA 58.594 36.000 6.50 0.00 39.62 2.57
6127 9105 5.976458 TGTGTCACACAGCATATAAGATGA 58.024 37.500 6.50 0.00 39.62 2.92
6176 9154 3.884693 ACAGAAAGCACATGTTCATGACA 59.115 39.130 17.96 0.00 43.71 3.58
6204 9182 9.706691 ATCGACAGAAAGTGTTTTTCTATTCTA 57.293 29.630 2.18 0.00 40.56 2.10
6209 9187 7.207383 TGAGATCGACAGAAAGTGTTTTTCTA 58.793 34.615 2.18 0.00 40.56 2.10
6254 9234 3.004734 CCTACAAAAGCTGTGGTTCTTGG 59.995 47.826 0.00 0.00 39.20 3.61
6268 9248 3.634910 GCCCTTGTTGAACTCCTACAAAA 59.365 43.478 0.00 0.00 39.34 2.44
6291 9271 6.757010 TCGATCCTTGTATTCTCTAGCAAAAC 59.243 38.462 0.00 0.00 0.00 2.43
6303 9283 6.043706 AGGGAAAGATGATCGATCCTTGTATT 59.956 38.462 22.31 9.90 0.00 1.89
6324 9304 3.583228 TCAGTGTCCAAAGTAAGAGGGA 58.417 45.455 0.00 0.00 0.00 4.20
6356 9337 2.493675 TGTAAACAGTTGTTGCAGCCAA 59.506 40.909 0.00 0.00 38.44 4.52
6359 9340 4.111916 ACATTGTAAACAGTTGTTGCAGC 58.888 39.130 0.00 0.00 38.44 5.25
6379 9360 0.031857 CGGCCAAAGCAATTGTGACA 59.968 50.000 2.24 0.00 42.56 3.58
6454 9435 5.122711 GCAGTATTGCCATTTGAAAGCATTT 59.877 36.000 0.00 0.00 44.74 2.32
6457 9438 3.587923 GCAGTATTGCCATTTGAAAGCA 58.412 40.909 0.00 0.00 44.74 3.91
6470 9451 6.261603 TCTTTGCTGATATCCAAGCAGTATTG 59.738 38.462 15.12 7.63 38.57 1.90
6473 9454 5.357742 TCTTTGCTGATATCCAAGCAGTA 57.642 39.130 15.12 8.82 38.57 2.74
6541 9527 6.884295 TGTGATTTATTTGGAATTCGGAGTCT 59.116 34.615 0.00 0.00 0.00 3.24
6550 9536 9.865321 CAGTCAAAGATGTGATTTATTTGGAAT 57.135 29.630 0.00 0.00 32.91 3.01
6596 9582 6.817765 ACAAAGGAATCTTATCGCTTTTCA 57.182 33.333 0.00 0.00 32.01 2.69
6641 9627 8.334016 TGCATAAACACGATAAAAATGCATAC 57.666 30.769 0.00 0.00 42.22 2.39
6656 9642 7.023575 CCAGACAGTATTTCTTGCATAAACAC 58.976 38.462 0.00 0.00 0.00 3.32
6663 9649 7.442364 GCTTATATCCAGACAGTATTTCTTGCA 59.558 37.037 0.00 0.00 0.00 4.08
6666 9652 9.553064 CTTGCTTATATCCAGACAGTATTTCTT 57.447 33.333 0.00 0.00 0.00 2.52
6699 9721 2.084610 TGAGCACTTCGAGGACAATG 57.915 50.000 0.00 0.00 0.00 2.82
6701 9723 1.941209 GCATGAGCACTTCGAGGACAA 60.941 52.381 0.00 0.00 41.58 3.18
6702 9724 0.390340 GCATGAGCACTTCGAGGACA 60.390 55.000 0.00 0.00 41.58 4.02
6703 9725 2.378028 GCATGAGCACTTCGAGGAC 58.622 57.895 0.00 0.00 41.58 3.85
6704 9726 4.919653 GCATGAGCACTTCGAGGA 57.080 55.556 0.00 0.00 41.58 3.71
6715 9737 0.522705 GTCGCAGTTGCATGCATGAG 60.523 55.000 30.64 19.13 46.87 2.90
6719 9741 0.956902 ATCAGTCGCAGTTGCATGCA 60.957 50.000 18.46 18.46 46.87 3.96
6734 9756 3.303881 TGAACACGAGGTCTTCATCAG 57.696 47.619 0.00 0.00 0.00 2.90
6735 9757 3.258123 TCATGAACACGAGGTCTTCATCA 59.742 43.478 0.00 0.00 33.29 3.07
6737 9759 3.961480 TCATGAACACGAGGTCTTCAT 57.039 42.857 0.00 0.00 35.45 2.57
6749 9771 3.541996 AGCCACACGATATCATGAACA 57.458 42.857 5.67 0.00 0.00 3.18
6762 9784 0.951558 ACATTTGACGGAAGCCACAC 59.048 50.000 0.00 0.00 0.00 3.82
6772 9794 2.753989 TGTCACTTGCACATTTGACG 57.246 45.000 10.12 0.00 41.11 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.