Multiple sequence alignment - TraesCS4D01G088400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G088400 chr4D 100.000 7219 0 0 1 7219 63591247 63584029 0.000000e+00 13332.0
1 TraesCS4D01G088400 chr4D 76.570 589 103 25 2996 3559 397095192 397094614 2.550000e-74 291.0
2 TraesCS4D01G088400 chr4D 80.000 305 49 9 5801 6099 397094311 397094013 1.580000e-51 215.0
3 TraesCS4D01G088400 chr4B 95.229 3773 128 17 272 4013 94214269 94210518 0.000000e+00 5923.0
4 TraesCS4D01G088400 chr4B 91.001 3256 171 52 4013 7219 94210476 94207294 0.000000e+00 4277.0
5 TraesCS4D01G088400 chr4B 75.593 590 107 24 2996 3559 489089017 489088439 2.580000e-64 257.0
6 TraesCS4D01G088400 chr4B 79.355 310 52 12 5801 6104 489088135 489087832 2.640000e-49 207.0
7 TraesCS4D01G088400 chr4A 93.864 3781 138 35 275 4013 532791340 532795068 0.000000e+00 5611.0
8 TraesCS4D01G088400 chr4A 92.800 2361 111 29 4890 7205 532795919 532798265 0.000000e+00 3363.0
9 TraesCS4D01G088400 chr4A 89.636 357 17 5 4229 4565 532795321 532795677 3.090000e-118 436.0
10 TraesCS4D01G088400 chr4A 76.570 589 103 25 2996 3559 54108066 54107488 2.550000e-74 291.0
11 TraesCS4D01G088400 chr4A 90.654 214 10 5 4669 4872 532795719 532795932 7.130000e-70 276.0
12 TraesCS4D01G088400 chr4A 78.964 309 55 8 5801 6104 54107183 54106880 1.230000e-47 202.0
13 TraesCS4D01G088400 chr1B 96.214 2562 88 2 1101 3653 222207250 222209811 0.000000e+00 4185.0
14 TraesCS4D01G088400 chr1B 71.846 2227 478 114 1527 3653 687280401 687278224 1.080000e-137 501.0
15 TraesCS4D01G088400 chr1B 84.974 193 16 7 3748 3937 222209845 222210027 4.450000e-42 183.0
16 TraesCS4D01G088400 chrUn 96.615 384 7 1 2117 2494 480914301 480914684 3.670000e-177 632.0
17 TraesCS4D01G088400 chr1A 72.821 2145 425 123 1612 3653 592532711 592530622 2.900000e-163 586.0
18 TraesCS4D01G088400 chr1A 88.235 102 8 4 5798 5897 592529384 592529285 1.270000e-22 119.0
19 TraesCS4D01G088400 chr7B 78.242 455 59 21 3205 3651 713041724 713042146 9.290000e-64 255.0
20 TraesCS4D01G088400 chr7B 100.000 28 0 0 7127 7154 405071313 405071340 1.300000e-02 52.8
21 TraesCS4D01G088400 chr7A 77.582 455 60 23 3205 3650 712180041 712180462 3.370000e-58 237.0
22 TraesCS4D01G088400 chr7A 85.507 138 20 0 5795 5932 712180950 712181087 2.100000e-30 145.0
23 TraesCS4D01G088400 chr7A 94.737 38 2 0 7127 7164 716988959 716988996 7.820000e-05 60.2
24 TraesCS4D01G088400 chr7D 84.559 136 21 0 5797 5932 618489476 618489611 1.260000e-27 135.0
25 TraesCS4D01G088400 chr7D 100.000 28 0 0 7127 7154 594094230 594094257 1.300000e-02 52.8
26 TraesCS4D01G088400 chr1D 88.235 102 8 4 5798 5897 494010418 494010319 1.270000e-22 119.0
27 TraesCS4D01G088400 chr3D 100.000 28 0 0 7127 7154 18320219 18320192 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G088400 chr4D 63584029 63591247 7218 True 13332.0 13332 100.0000 1 7219 1 chr4D.!!$R1 7218
1 TraesCS4D01G088400 chr4D 397094013 397095192 1179 True 253.0 291 78.2850 2996 6099 2 chr4D.!!$R2 3103
2 TraesCS4D01G088400 chr4B 94207294 94214269 6975 True 5100.0 5923 93.1150 272 7219 2 chr4B.!!$R1 6947
3 TraesCS4D01G088400 chr4B 489087832 489089017 1185 True 232.0 257 77.4740 2996 6104 2 chr4B.!!$R2 3108
4 TraesCS4D01G088400 chr4A 532791340 532798265 6925 False 2421.5 5611 91.7385 275 7205 4 chr4A.!!$F1 6930
5 TraesCS4D01G088400 chr4A 54106880 54108066 1186 True 246.5 291 77.7670 2996 6104 2 chr4A.!!$R1 3108
6 TraesCS4D01G088400 chr1B 222207250 222210027 2777 False 2184.0 4185 90.5940 1101 3937 2 chr1B.!!$F1 2836
7 TraesCS4D01G088400 chr1B 687278224 687280401 2177 True 501.0 501 71.8460 1527 3653 1 chr1B.!!$R1 2126
8 TraesCS4D01G088400 chr1A 592529285 592532711 3426 True 352.5 586 80.5280 1612 5897 2 chr1A.!!$R1 4285

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 254 0.105039 CCTTGTACTGCTCCGGATCC 59.895 60.000 3.57 0.00 0.0 3.36 F
666 678 0.109342 ACAGAGACACCCAAAGCAGG 59.891 55.000 0.00 0.00 0.0 4.85 F
882 904 0.620556 ATCTCTGCATCCACCCGTTT 59.379 50.000 0.00 0.00 0.0 3.60 F
1030 1052 1.549203 TCATCCTTTTGCCTTGCTCC 58.451 50.000 0.00 0.00 0.0 4.70 F
1845 1867 2.253758 CCACACCAACCAGCTGACG 61.254 63.158 17.39 1.02 0.0 4.35 F
3675 3804 0.392998 ATCCGTCCACACTGATTGCC 60.393 55.000 0.00 0.00 0.0 4.52 F
4141 4343 0.237498 CGTCTTCTTGGGCGTTTTCC 59.763 55.000 0.00 0.00 0.0 3.13 F
4784 5063 0.333652 TCACCCGTATCCCTCTGACA 59.666 55.000 0.00 0.00 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1067 1089 0.820891 GCCATGTCCATAGCCACTGG 60.821 60.000 0.00 0.00 34.93 4.00 R
2649 2677 0.542938 CGATGGCCTCTGGGATAGGA 60.543 60.000 3.32 0.00 36.08 2.94 R
2679 2710 3.073062 ACAGGTTGAGGTAATTCAGCACT 59.927 43.478 0.00 0.00 30.80 4.40 R
3093 3173 1.185315 TCATGCACTCGATCACCTCA 58.815 50.000 0.00 0.00 0.00 3.86 R
3728 3858 0.987294 ATAGGCAGGCAAGGCGATAT 59.013 50.000 0.00 0.00 39.37 1.63 R
5377 6266 0.465705 TGCAGATCCACCGGAATCTC 59.534 55.000 9.46 8.23 34.34 2.75 R
6206 7190 0.246635 GCCGGACTTAGTTCAGCAGA 59.753 55.000 5.05 0.00 0.00 4.26 R
6347 7335 2.304761 TGTTTATTGCTCTTCCCCGTCT 59.695 45.455 0.00 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.025401 CAAGCGCACCCCGTTGTC 62.025 66.667 11.47 0.00 39.71 3.18
23 24 4.250305 AAGCGCACCCCGTTGTCT 62.250 61.111 11.47 0.00 39.71 3.41
24 25 4.681978 AGCGCACCCCGTTGTCTC 62.682 66.667 11.47 0.00 39.71 3.36
27 28 4.681978 GCACCCCGTTGTCTCGCT 62.682 66.667 0.00 0.00 0.00 4.93
28 29 2.030562 CACCCCGTTGTCTCGCTT 59.969 61.111 0.00 0.00 0.00 4.68
29 30 1.290955 CACCCCGTTGTCTCGCTTA 59.709 57.895 0.00 0.00 0.00 3.09
30 31 0.320073 CACCCCGTTGTCTCGCTTAA 60.320 55.000 0.00 0.00 0.00 1.85
31 32 0.393820 ACCCCGTTGTCTCGCTTAAA 59.606 50.000 0.00 0.00 0.00 1.52
32 33 1.202675 ACCCCGTTGTCTCGCTTAAAA 60.203 47.619 0.00 0.00 0.00 1.52
33 34 1.196127 CCCCGTTGTCTCGCTTAAAAC 59.804 52.381 0.00 0.00 0.00 2.43
34 35 1.868498 CCCGTTGTCTCGCTTAAAACA 59.132 47.619 0.00 0.00 0.00 2.83
35 36 2.288458 CCCGTTGTCTCGCTTAAAACAA 59.712 45.455 0.00 0.00 0.00 2.83
36 37 3.541711 CCGTTGTCTCGCTTAAAACAAG 58.458 45.455 0.00 0.00 32.66 3.16
37 38 3.246699 CCGTTGTCTCGCTTAAAACAAGA 59.753 43.478 0.00 0.00 32.66 3.02
38 39 4.201576 CGTTGTCTCGCTTAAAACAAGAC 58.798 43.478 0.00 0.00 37.47 3.01
39 40 4.260051 CGTTGTCTCGCTTAAAACAAGACA 60.260 41.667 0.00 0.00 43.27 3.41
40 41 4.789095 TGTCTCGCTTAAAACAAGACAC 57.211 40.909 0.00 0.00 40.90 3.67
41 42 4.185394 TGTCTCGCTTAAAACAAGACACA 58.815 39.130 0.00 0.00 40.90 3.72
42 43 4.270084 TGTCTCGCTTAAAACAAGACACAG 59.730 41.667 0.00 0.00 40.90 3.66
43 44 3.807622 TCTCGCTTAAAACAAGACACAGG 59.192 43.478 0.00 0.00 0.00 4.00
44 45 2.875933 TCGCTTAAAACAAGACACAGGG 59.124 45.455 0.00 0.00 0.00 4.45
45 46 2.031157 CGCTTAAAACAAGACACAGGGG 60.031 50.000 0.00 0.00 0.00 4.79
46 47 2.288213 GCTTAAAACAAGACACAGGGGC 60.288 50.000 0.00 0.00 0.00 5.80
47 48 1.600023 TAAAACAAGACACAGGGGCG 58.400 50.000 0.00 0.00 0.00 6.13
48 49 1.734388 AAAACAAGACACAGGGGCGC 61.734 55.000 0.00 0.00 0.00 6.53
49 50 4.643387 ACAAGACACAGGGGCGCC 62.643 66.667 21.18 21.18 0.00 6.53
59 60 2.113351 GGGGCGCCCTTAGATTCC 59.887 66.667 42.70 21.56 41.34 3.01
60 61 2.280865 GGGCGCCCTTAGATTCCG 60.281 66.667 38.76 0.00 0.00 4.30
61 62 2.973052 GGCGCCCTTAGATTCCGC 60.973 66.667 18.11 0.00 43.51 5.54
62 63 2.109181 GCGCCCTTAGATTCCGCT 59.891 61.111 0.00 0.00 41.28 5.52
63 64 1.956678 GCGCCCTTAGATTCCGCTC 60.957 63.158 0.00 0.00 41.28 5.03
64 65 1.742768 CGCCCTTAGATTCCGCTCT 59.257 57.895 0.00 0.00 0.00 4.09
65 66 0.319125 CGCCCTTAGATTCCGCTCTC 60.319 60.000 0.00 0.00 0.00 3.20
66 67 0.753262 GCCCTTAGATTCCGCTCTCA 59.247 55.000 0.00 0.00 0.00 3.27
67 68 1.346068 GCCCTTAGATTCCGCTCTCAT 59.654 52.381 0.00 0.00 0.00 2.90
68 69 2.563179 GCCCTTAGATTCCGCTCTCATA 59.437 50.000 0.00 0.00 0.00 2.15
69 70 3.006967 GCCCTTAGATTCCGCTCTCATAA 59.993 47.826 0.00 0.00 0.00 1.90
70 71 4.323104 GCCCTTAGATTCCGCTCTCATAAT 60.323 45.833 0.00 0.00 0.00 1.28
71 72 5.105310 GCCCTTAGATTCCGCTCTCATAATA 60.105 44.000 0.00 0.00 0.00 0.98
72 73 6.334202 CCCTTAGATTCCGCTCTCATAATAC 58.666 44.000 0.00 0.00 0.00 1.89
73 74 6.071334 CCCTTAGATTCCGCTCTCATAATACA 60.071 42.308 0.00 0.00 0.00 2.29
74 75 7.364232 CCCTTAGATTCCGCTCTCATAATACAT 60.364 40.741 0.00 0.00 0.00 2.29
75 76 8.687242 CCTTAGATTCCGCTCTCATAATACATA 58.313 37.037 0.00 0.00 0.00 2.29
78 79 8.298729 AGATTCCGCTCTCATAATACATATGA 57.701 34.615 10.38 0.00 46.41 2.15
108 109 9.729281 TGTAGGTATTTAAACTTTAAGAGTGGG 57.271 33.333 0.00 0.00 39.00 4.61
109 110 9.730705 GTAGGTATTTAAACTTTAAGAGTGGGT 57.269 33.333 0.00 0.00 39.00 4.51
111 112 9.650714 AGGTATTTAAACTTTAAGAGTGGGTTT 57.349 29.630 0.00 0.00 39.00 3.27
115 116 5.509716 AAACTTTAAGAGTGGGTTTTCGG 57.490 39.130 0.00 0.00 39.00 4.30
116 117 3.483421 ACTTTAAGAGTGGGTTTTCGGG 58.517 45.455 0.00 0.00 37.17 5.14
117 118 2.572209 TTAAGAGTGGGTTTTCGGGG 57.428 50.000 0.00 0.00 0.00 5.73
118 119 0.694196 TAAGAGTGGGTTTTCGGGGG 59.306 55.000 0.00 0.00 0.00 5.40
119 120 1.358051 AAGAGTGGGTTTTCGGGGGT 61.358 55.000 0.00 0.00 0.00 4.95
120 121 1.152138 GAGTGGGTTTTCGGGGGTT 59.848 57.895 0.00 0.00 0.00 4.11
121 122 0.401356 GAGTGGGTTTTCGGGGGTTA 59.599 55.000 0.00 0.00 0.00 2.85
122 123 0.852155 AGTGGGTTTTCGGGGGTTAA 59.148 50.000 0.00 0.00 0.00 2.01
123 124 1.202964 AGTGGGTTTTCGGGGGTTAAG 60.203 52.381 0.00 0.00 0.00 1.85
124 125 0.852155 TGGGTTTTCGGGGGTTAAGT 59.148 50.000 0.00 0.00 0.00 2.24
125 126 1.217436 TGGGTTTTCGGGGGTTAAGTT 59.783 47.619 0.00 0.00 0.00 2.66
126 127 1.614903 GGGTTTTCGGGGGTTAAGTTG 59.385 52.381 0.00 0.00 0.00 3.16
127 128 2.309613 GGTTTTCGGGGGTTAAGTTGT 58.690 47.619 0.00 0.00 0.00 3.32
128 129 2.034939 GGTTTTCGGGGGTTAAGTTGTG 59.965 50.000 0.00 0.00 0.00 3.33
129 130 1.984066 TTTCGGGGGTTAAGTTGTGG 58.016 50.000 0.00 0.00 0.00 4.17
130 131 0.110869 TTCGGGGGTTAAGTTGTGGG 59.889 55.000 0.00 0.00 0.00 4.61
131 132 0.767446 TCGGGGGTTAAGTTGTGGGA 60.767 55.000 0.00 0.00 0.00 4.37
132 133 0.110869 CGGGGGTTAAGTTGTGGGAA 59.889 55.000 0.00 0.00 0.00 3.97
133 134 1.624336 GGGGGTTAAGTTGTGGGAAC 58.376 55.000 0.00 0.00 0.00 3.62
134 135 1.241165 GGGGTTAAGTTGTGGGAACG 58.759 55.000 0.00 0.00 0.00 3.95
135 136 1.202794 GGGGTTAAGTTGTGGGAACGA 60.203 52.381 0.00 0.00 0.00 3.85
136 137 2.148768 GGGTTAAGTTGTGGGAACGAG 58.851 52.381 0.00 0.00 0.00 4.18
137 138 2.224354 GGGTTAAGTTGTGGGAACGAGA 60.224 50.000 0.00 0.00 0.00 4.04
138 139 3.558533 GGGTTAAGTTGTGGGAACGAGAT 60.559 47.826 0.00 0.00 0.00 2.75
139 140 4.322953 GGGTTAAGTTGTGGGAACGAGATA 60.323 45.833 0.00 0.00 0.00 1.98
140 141 4.868734 GGTTAAGTTGTGGGAACGAGATAG 59.131 45.833 0.00 0.00 0.00 2.08
141 142 5.337009 GGTTAAGTTGTGGGAACGAGATAGA 60.337 44.000 0.00 0.00 0.00 1.98
142 143 4.457834 AAGTTGTGGGAACGAGATAGAG 57.542 45.455 0.00 0.00 0.00 2.43
143 144 3.432378 AGTTGTGGGAACGAGATAGAGT 58.568 45.455 0.00 0.00 0.00 3.24
144 145 3.833070 AGTTGTGGGAACGAGATAGAGTT 59.167 43.478 0.00 0.00 0.00 3.01
145 146 3.868757 TGTGGGAACGAGATAGAGTTG 57.131 47.619 0.00 0.00 0.00 3.16
146 147 2.094182 TGTGGGAACGAGATAGAGTTGC 60.094 50.000 0.00 0.00 37.85 4.17
147 148 2.166664 GTGGGAACGAGATAGAGTTGCT 59.833 50.000 0.00 0.00 38.48 3.91
148 149 2.427453 TGGGAACGAGATAGAGTTGCTC 59.573 50.000 0.00 0.00 38.48 4.26
149 150 2.691011 GGGAACGAGATAGAGTTGCTCT 59.309 50.000 4.02 4.02 43.83 4.09
150 151 3.243267 GGGAACGAGATAGAGTTGCTCTC 60.243 52.174 1.54 2.14 40.34 3.20
151 152 3.378742 GGAACGAGATAGAGTTGCTCTCA 59.621 47.826 1.54 0.38 44.98 3.27
152 153 4.142359 GGAACGAGATAGAGTTGCTCTCAA 60.142 45.833 1.54 0.00 44.98 3.02
153 154 5.451242 GGAACGAGATAGAGTTGCTCTCAAT 60.451 44.000 1.54 0.00 44.98 2.57
154 155 5.590530 ACGAGATAGAGTTGCTCTCAATT 57.409 39.130 1.54 0.00 44.98 2.32
155 156 6.701145 ACGAGATAGAGTTGCTCTCAATTA 57.299 37.500 1.54 0.00 44.98 1.40
156 157 6.500041 ACGAGATAGAGTTGCTCTCAATTAC 58.500 40.000 1.54 0.00 44.98 1.89
157 158 6.095580 ACGAGATAGAGTTGCTCTCAATTACA 59.904 38.462 1.54 0.00 44.98 2.41
158 159 6.975197 CGAGATAGAGTTGCTCTCAATTACAA 59.025 38.462 1.54 0.00 44.98 2.41
159 160 7.043722 CGAGATAGAGTTGCTCTCAATTACAAC 60.044 40.741 1.54 0.00 44.98 3.32
160 161 7.044798 AGATAGAGTTGCTCTCAATTACAACC 58.955 38.462 1.54 0.00 44.98 3.77
161 162 4.973168 AGAGTTGCTCTCAATTACAACCA 58.027 39.130 10.92 0.00 44.98 3.67
162 163 5.376625 AGAGTTGCTCTCAATTACAACCAA 58.623 37.500 10.92 0.00 44.98 3.67
163 164 5.471456 AGAGTTGCTCTCAATTACAACCAAG 59.529 40.000 10.92 0.00 44.98 3.61
164 165 5.376625 AGTTGCTCTCAATTACAACCAAGA 58.623 37.500 0.00 0.00 42.61 3.02
165 166 5.827797 AGTTGCTCTCAATTACAACCAAGAA 59.172 36.000 0.00 0.00 42.61 2.52
166 167 5.689383 TGCTCTCAATTACAACCAAGAAC 57.311 39.130 0.00 0.00 0.00 3.01
167 168 4.518970 TGCTCTCAATTACAACCAAGAACC 59.481 41.667 0.00 0.00 0.00 3.62
168 169 4.518970 GCTCTCAATTACAACCAAGAACCA 59.481 41.667 0.00 0.00 0.00 3.67
169 170 5.562890 GCTCTCAATTACAACCAAGAACCAC 60.563 44.000 0.00 0.00 0.00 4.16
170 171 5.441500 TCTCAATTACAACCAAGAACCACA 58.558 37.500 0.00 0.00 0.00 4.17
171 172 6.068010 TCTCAATTACAACCAAGAACCACAT 58.932 36.000 0.00 0.00 0.00 3.21
172 173 6.016360 TCTCAATTACAACCAAGAACCACATG 60.016 38.462 0.00 0.00 0.00 3.21
173 174 5.010516 TCAATTACAACCAAGAACCACATGG 59.989 40.000 0.00 0.00 42.35 3.66
174 175 1.039856 ACAACCAAGAACCACATGGC 58.960 50.000 0.00 0.00 40.58 4.40
175 176 1.039068 CAACCAAGAACCACATGGCA 58.961 50.000 0.00 0.00 40.58 4.92
176 177 1.619827 CAACCAAGAACCACATGGCAT 59.380 47.619 0.00 0.00 40.58 4.40
177 178 2.824936 CAACCAAGAACCACATGGCATA 59.175 45.455 0.00 0.00 40.58 3.14
178 179 3.386932 ACCAAGAACCACATGGCATAT 57.613 42.857 0.00 0.00 40.58 1.78
179 180 3.025978 ACCAAGAACCACATGGCATATG 58.974 45.455 0.00 0.00 40.58 1.78
180 181 3.025978 CCAAGAACCACATGGCATATGT 58.974 45.455 4.87 0.00 39.32 2.29
181 182 3.181484 CCAAGAACCACATGGCATATGTG 60.181 47.826 20.39 20.39 46.49 3.21
187 188 3.631145 CACATGGCATATGTGGTAAGC 57.369 47.619 19.86 0.00 44.04 3.09
188 189 3.216800 CACATGGCATATGTGGTAAGCT 58.783 45.455 19.86 0.00 44.04 3.74
189 190 4.388485 CACATGGCATATGTGGTAAGCTA 58.612 43.478 19.86 0.00 44.04 3.32
190 191 5.005740 CACATGGCATATGTGGTAAGCTAT 58.994 41.667 19.86 0.00 44.04 2.97
191 192 5.122869 CACATGGCATATGTGGTAAGCTATC 59.877 44.000 19.86 0.00 44.04 2.08
192 193 4.972751 TGGCATATGTGGTAAGCTATCA 57.027 40.909 4.29 0.00 0.00 2.15
193 194 5.503634 TGGCATATGTGGTAAGCTATCAT 57.496 39.130 4.29 0.00 0.00 2.45
194 195 5.247862 TGGCATATGTGGTAAGCTATCATG 58.752 41.667 4.29 0.00 0.00 3.07
195 196 5.012975 TGGCATATGTGGTAAGCTATCATGA 59.987 40.000 4.29 0.00 0.00 3.07
196 197 5.939883 GGCATATGTGGTAAGCTATCATGAA 59.060 40.000 0.00 0.00 0.00 2.57
197 198 6.430925 GGCATATGTGGTAAGCTATCATGAAA 59.569 38.462 0.00 0.00 0.00 2.69
198 199 7.361542 GGCATATGTGGTAAGCTATCATGAAAG 60.362 40.741 0.00 0.00 0.00 2.62
199 200 7.388776 GCATATGTGGTAAGCTATCATGAAAGA 59.611 37.037 0.00 0.00 0.00 2.52
200 201 9.276590 CATATGTGGTAAGCTATCATGAAAGAA 57.723 33.333 0.00 0.00 0.00 2.52
201 202 6.985188 TGTGGTAAGCTATCATGAAAGAAC 57.015 37.500 0.00 0.00 0.00 3.01
202 203 6.472016 TGTGGTAAGCTATCATGAAAGAACA 58.528 36.000 0.00 0.00 0.00 3.18
203 204 6.371548 TGTGGTAAGCTATCATGAAAGAACAC 59.628 38.462 0.00 2.30 0.00 3.32
204 205 5.880332 TGGTAAGCTATCATGAAAGAACACC 59.120 40.000 0.00 4.78 0.00 4.16
205 206 6.116126 GGTAAGCTATCATGAAAGAACACCT 58.884 40.000 0.00 0.00 0.00 4.00
206 207 7.093068 TGGTAAGCTATCATGAAAGAACACCTA 60.093 37.037 0.00 0.00 0.00 3.08
207 208 7.769044 GGTAAGCTATCATGAAAGAACACCTAA 59.231 37.037 0.00 0.00 0.00 2.69
208 209 9.162764 GTAAGCTATCATGAAAGAACACCTAAA 57.837 33.333 0.00 0.00 0.00 1.85
209 210 8.635765 AAGCTATCATGAAAGAACACCTAAAA 57.364 30.769 0.00 0.00 0.00 1.52
210 211 8.635765 AGCTATCATGAAAGAACACCTAAAAA 57.364 30.769 0.00 0.00 0.00 1.94
228 229 4.502105 AAAAATGACTTGCCCAAAACCT 57.498 36.364 0.00 0.00 0.00 3.50
229 230 4.502105 AAAATGACTTGCCCAAAACCTT 57.498 36.364 0.00 0.00 0.00 3.50
230 231 3.751479 AATGACTTGCCCAAAACCTTC 57.249 42.857 0.00 0.00 0.00 3.46
231 232 2.452600 TGACTTGCCCAAAACCTTCT 57.547 45.000 0.00 0.00 0.00 2.85
232 233 2.745968 TGACTTGCCCAAAACCTTCTT 58.254 42.857 0.00 0.00 0.00 2.52
233 234 3.103742 TGACTTGCCCAAAACCTTCTTT 58.896 40.909 0.00 0.00 0.00 2.52
234 235 3.132111 TGACTTGCCCAAAACCTTCTTTC 59.868 43.478 0.00 0.00 0.00 2.62
235 236 2.434336 ACTTGCCCAAAACCTTCTTTCC 59.566 45.455 0.00 0.00 0.00 3.13
236 237 2.470057 TGCCCAAAACCTTCTTTCCT 57.530 45.000 0.00 0.00 0.00 3.36
237 238 2.758130 TGCCCAAAACCTTCTTTCCTT 58.242 42.857 0.00 0.00 0.00 3.36
238 239 2.433970 TGCCCAAAACCTTCTTTCCTTG 59.566 45.455 0.00 0.00 0.00 3.61
239 240 2.434336 GCCCAAAACCTTCTTTCCTTGT 59.566 45.455 0.00 0.00 0.00 3.16
240 241 3.639561 GCCCAAAACCTTCTTTCCTTGTA 59.360 43.478 0.00 0.00 0.00 2.41
241 242 4.500887 GCCCAAAACCTTCTTTCCTTGTAC 60.501 45.833 0.00 0.00 0.00 2.90
242 243 4.893524 CCCAAAACCTTCTTTCCTTGTACT 59.106 41.667 0.00 0.00 0.00 2.73
243 244 5.221244 CCCAAAACCTTCTTTCCTTGTACTG 60.221 44.000 0.00 0.00 0.00 2.74
244 245 5.281727 CAAAACCTTCTTTCCTTGTACTGC 58.718 41.667 0.00 0.00 0.00 4.40
245 246 4.439253 AACCTTCTTTCCTTGTACTGCT 57.561 40.909 0.00 0.00 0.00 4.24
246 247 4.009370 ACCTTCTTTCCTTGTACTGCTC 57.991 45.455 0.00 0.00 0.00 4.26
247 248 3.244596 ACCTTCTTTCCTTGTACTGCTCC 60.245 47.826 0.00 0.00 0.00 4.70
248 249 2.743636 TCTTTCCTTGTACTGCTCCG 57.256 50.000 0.00 0.00 0.00 4.63
249 250 1.275291 TCTTTCCTTGTACTGCTCCGG 59.725 52.381 0.00 0.00 0.00 5.14
250 251 1.275291 CTTTCCTTGTACTGCTCCGGA 59.725 52.381 2.93 2.93 0.00 5.14
251 252 1.568504 TTCCTTGTACTGCTCCGGAT 58.431 50.000 3.57 0.00 0.00 4.18
252 253 1.112113 TCCTTGTACTGCTCCGGATC 58.888 55.000 3.57 0.00 0.00 3.36
253 254 0.105039 CCTTGTACTGCTCCGGATCC 59.895 60.000 3.57 0.00 0.00 3.36
254 255 1.115467 CTTGTACTGCTCCGGATCCT 58.885 55.000 3.57 0.00 0.00 3.24
255 256 2.307768 CTTGTACTGCTCCGGATCCTA 58.692 52.381 3.57 0.00 0.00 2.94
256 257 1.688772 TGTACTGCTCCGGATCCTAC 58.311 55.000 3.57 3.96 0.00 3.18
257 258 1.214673 TGTACTGCTCCGGATCCTACT 59.785 52.381 3.57 0.00 0.00 2.57
258 259 2.308690 GTACTGCTCCGGATCCTACTT 58.691 52.381 3.57 0.00 0.00 2.24
259 260 1.404843 ACTGCTCCGGATCCTACTTC 58.595 55.000 3.57 0.00 0.00 3.01
260 261 1.063567 ACTGCTCCGGATCCTACTTCT 60.064 52.381 3.57 0.00 0.00 2.85
261 262 2.035632 CTGCTCCGGATCCTACTTCTT 58.964 52.381 3.57 0.00 0.00 2.52
262 263 2.432510 CTGCTCCGGATCCTACTTCTTT 59.567 50.000 3.57 0.00 0.00 2.52
263 264 2.838202 TGCTCCGGATCCTACTTCTTTT 59.162 45.455 3.57 0.00 0.00 2.27
264 265 4.028131 TGCTCCGGATCCTACTTCTTTTA 58.972 43.478 3.57 0.00 0.00 1.52
265 266 4.654262 TGCTCCGGATCCTACTTCTTTTAT 59.346 41.667 3.57 0.00 0.00 1.40
266 267 5.836898 TGCTCCGGATCCTACTTCTTTTATA 59.163 40.000 3.57 0.00 0.00 0.98
267 268 6.497259 TGCTCCGGATCCTACTTCTTTTATAT 59.503 38.462 3.57 0.00 0.00 0.86
268 269 6.814146 GCTCCGGATCCTACTTCTTTTATATG 59.186 42.308 3.57 0.00 0.00 1.78
269 270 7.309867 GCTCCGGATCCTACTTCTTTTATATGA 60.310 40.741 3.57 0.00 0.00 2.15
270 271 8.486942 TCCGGATCCTACTTCTTTTATATGAA 57.513 34.615 10.75 0.00 0.00 2.57
285 286 9.338622 CTTTTATATGAAACTCCGGAACCTATT 57.661 33.333 5.23 0.00 0.00 1.73
288 289 2.014857 GAAACTCCGGAACCTATTGGC 58.985 52.381 5.23 0.00 36.63 4.52
436 437 1.411977 CCATGCCATAATTGCCCGAAA 59.588 47.619 0.00 0.00 0.00 3.46
468 469 5.669798 ATACTCCCCAAAGCTAATGGAAT 57.330 39.130 17.80 1.06 40.56 3.01
478 479 7.280652 CCCAAAGCTAATGGAATAATTTGTTGG 59.719 37.037 17.80 7.67 40.56 3.77
479 480 7.280652 CCAAAGCTAATGGAATAATTTGTTGGG 59.719 37.037 12.11 0.00 40.56 4.12
481 482 7.919385 AGCTAATGGAATAATTTGTTGGGAT 57.081 32.000 0.00 0.00 0.00 3.85
482 483 8.322905 AGCTAATGGAATAATTTGTTGGGATT 57.677 30.769 0.00 0.00 0.00 3.01
483 484 8.771286 AGCTAATGGAATAATTTGTTGGGATTT 58.229 29.630 0.00 0.00 0.00 2.17
484 485 8.829612 GCTAATGGAATAATTTGTTGGGATTTG 58.170 33.333 0.00 0.00 0.00 2.32
485 486 9.889128 CTAATGGAATAATTTGTTGGGATTTGT 57.111 29.630 0.00 0.00 0.00 2.83
487 488 7.976135 TGGAATAATTTGTTGGGATTTGTTG 57.024 32.000 0.00 0.00 0.00 3.33
488 489 7.739825 TGGAATAATTTGTTGGGATTTGTTGA 58.260 30.769 0.00 0.00 0.00 3.18
489 490 8.381636 TGGAATAATTTGTTGGGATTTGTTGAT 58.618 29.630 0.00 0.00 0.00 2.57
666 678 0.109342 ACAGAGACACCCAAAGCAGG 59.891 55.000 0.00 0.00 0.00 4.85
762 784 2.605825 ACATATTCCCCTCCCCTTCA 57.394 50.000 0.00 0.00 0.00 3.02
855 877 4.257078 TCCCTCTATCTACCCATCTACCA 58.743 47.826 0.00 0.00 0.00 3.25
857 879 4.345854 CCTCTATCTACCCATCTACCACC 58.654 52.174 0.00 0.00 0.00 4.61
858 880 4.044825 CCTCTATCTACCCATCTACCACCT 59.955 50.000 0.00 0.00 0.00 4.00
859 881 5.258051 CTCTATCTACCCATCTACCACCTC 58.742 50.000 0.00 0.00 0.00 3.85
860 882 4.920749 TCTATCTACCCATCTACCACCTCT 59.079 45.833 0.00 0.00 0.00 3.69
862 884 3.132056 TCTACCCATCTACCACCTCTCT 58.868 50.000 0.00 0.00 0.00 3.10
868 890 4.044065 CCCATCTACCACCTCTCTATCTCT 59.956 50.000 0.00 0.00 0.00 3.10
869 891 5.009631 CCATCTACCACCTCTCTATCTCTG 58.990 50.000 0.00 0.00 0.00 3.35
876 898 3.005684 CACCTCTCTATCTCTGCATCCAC 59.994 52.174 0.00 0.00 0.00 4.02
879 901 1.271934 CTCTATCTCTGCATCCACCCG 59.728 57.143 0.00 0.00 0.00 5.28
881 903 1.414181 CTATCTCTGCATCCACCCGTT 59.586 52.381 0.00 0.00 0.00 4.44
882 904 0.620556 ATCTCTGCATCCACCCGTTT 59.379 50.000 0.00 0.00 0.00 3.60
886 908 1.837439 TCTGCATCCACCCGTTTATCT 59.163 47.619 0.00 0.00 0.00 1.98
961 983 3.243434 TGGCTGCGTATTCTAGCTAGTTC 60.243 47.826 20.10 8.46 37.58 3.01
971 993 3.982516 TCTAGCTAGTTCCTCACCACAT 58.017 45.455 20.10 0.00 0.00 3.21
1030 1052 1.549203 TCATCCTTTTGCCTTGCTCC 58.451 50.000 0.00 0.00 0.00 4.70
1067 1089 6.268825 TCTTCTACTATCCACCGATAATGC 57.731 41.667 0.00 0.00 30.46 3.56
1845 1867 2.253758 CCACACCAACCAGCTGACG 61.254 63.158 17.39 1.02 0.00 4.35
2010 2032 2.261671 CCGGTCCCTGACTTCGTG 59.738 66.667 0.00 0.00 32.47 4.35
2382 2404 4.387343 AACCCGAGCCCGACCCTA 62.387 66.667 0.00 0.00 38.22 3.53
2383 2405 4.835891 ACCCGAGCCCGACCCTAG 62.836 72.222 0.00 0.00 38.22 3.02
2679 2710 2.741092 GCCATCGCCGGGATAAGA 59.259 61.111 2.18 0.00 32.85 2.10
2994 3052 4.063967 CTGGCGTGCTCGGTGGTA 62.064 66.667 10.52 0.00 37.56 3.25
3093 3173 2.125512 GTGGACTTCGGCATCGCT 60.126 61.111 0.00 0.00 36.13 4.93
3653 3779 1.936436 TACATCGCGCCAGGTACGTT 61.936 55.000 0.00 0.00 0.00 3.99
3654 3780 1.226745 CATCGCGCCAGGTACGTTA 60.227 57.895 0.00 0.00 0.00 3.18
3675 3804 0.392998 ATCCGTCCACACTGATTGCC 60.393 55.000 0.00 0.00 0.00 4.52
3707 3836 4.083164 ACGTCTCGTTACATACACATGTGA 60.083 41.667 31.94 15.72 39.56 3.58
3728 3858 5.050363 GTGATTGTTTTTGTCTCTAGTCGCA 60.050 40.000 0.00 0.00 0.00 5.10
3890 4024 4.280461 CGAAGTCAATAGCCAGTAGTACG 58.720 47.826 0.00 0.00 0.00 3.67
3894 4028 4.888239 AGTCAATAGCCAGTAGTACGACAT 59.112 41.667 8.90 0.00 0.00 3.06
3895 4029 6.060136 AGTCAATAGCCAGTAGTACGACATA 58.940 40.000 8.90 0.00 0.00 2.29
3907 4044 5.717078 AGTACGACATAAGGACAAGTGAA 57.283 39.130 0.00 0.00 0.00 3.18
3971 4109 0.933097 GACCACATGCACGCAGATAG 59.067 55.000 0.00 0.00 0.00 2.08
3972 4110 0.536724 ACCACATGCACGCAGATAGA 59.463 50.000 0.00 0.00 0.00 1.98
3973 4111 1.139654 ACCACATGCACGCAGATAGAT 59.860 47.619 0.00 0.00 0.00 1.98
3974 4112 2.365293 ACCACATGCACGCAGATAGATA 59.635 45.455 0.00 0.00 0.00 1.98
4032 4229 3.376546 GCCTCACTGTTTCAGATCAATCC 59.623 47.826 3.70 0.00 35.18 3.01
4039 4236 0.461870 TTCAGATCAATCCGCACGGG 60.462 55.000 9.58 0.00 35.59 5.28
4064 4265 2.437200 TTGGTCCCAGTACGTTTACG 57.563 50.000 0.00 0.00 46.33 3.18
4080 4281 5.077424 CGTTTACGCTTCGAAATTAAGCTT 58.923 37.500 3.48 3.48 45.73 3.74
4130 4332 6.059787 TCCTTAGTAGGAGTACGTCTTCTT 57.940 41.667 0.00 0.00 45.82 2.52
4131 4333 5.879223 TCCTTAGTAGGAGTACGTCTTCTTG 59.121 44.000 0.00 0.22 45.82 3.02
4132 4334 5.066246 CCTTAGTAGGAGTACGTCTTCTTGG 59.934 48.000 0.00 4.10 45.05 3.61
4133 4335 3.354467 AGTAGGAGTACGTCTTCTTGGG 58.646 50.000 0.00 0.00 33.40 4.12
4134 4336 0.896226 AGGAGTACGTCTTCTTGGGC 59.104 55.000 0.00 0.00 0.00 5.36
4135 4337 0.458025 GGAGTACGTCTTCTTGGGCG 60.458 60.000 0.00 0.00 0.00 6.13
4136 4338 0.243095 GAGTACGTCTTCTTGGGCGT 59.757 55.000 0.00 0.00 40.76 5.68
4138 4340 1.069668 AGTACGTCTTCTTGGGCGTTT 59.930 47.619 0.00 0.00 38.56 3.60
4141 4343 0.237498 CGTCTTCTTGGGCGTTTTCC 59.763 55.000 0.00 0.00 0.00 3.13
4142 4344 1.605753 GTCTTCTTGGGCGTTTTCCT 58.394 50.000 0.00 0.00 0.00 3.36
4143 4345 1.535896 GTCTTCTTGGGCGTTTTCCTC 59.464 52.381 0.00 0.00 0.00 3.71
4144 4346 1.420138 TCTTCTTGGGCGTTTTCCTCT 59.580 47.619 0.00 0.00 0.00 3.69
4145 4347 2.158667 TCTTCTTGGGCGTTTTCCTCTT 60.159 45.455 0.00 0.00 0.00 2.85
4146 4348 1.892209 TCTTGGGCGTTTTCCTCTTC 58.108 50.000 0.00 0.00 0.00 2.87
4147 4349 1.420138 TCTTGGGCGTTTTCCTCTTCT 59.580 47.619 0.00 0.00 0.00 2.85
4148 4350 2.158667 TCTTGGGCGTTTTCCTCTTCTT 60.159 45.455 0.00 0.00 0.00 2.52
4150 4352 2.661718 TGGGCGTTTTCCTCTTCTTTT 58.338 42.857 0.00 0.00 0.00 2.27
4151 4353 2.621526 TGGGCGTTTTCCTCTTCTTTTC 59.378 45.455 0.00 0.00 0.00 2.29
4152 4354 2.885266 GGGCGTTTTCCTCTTCTTTTCT 59.115 45.455 0.00 0.00 0.00 2.52
4154 4356 4.202121 GGGCGTTTTCCTCTTCTTTTCTTT 60.202 41.667 0.00 0.00 0.00 2.52
4155 4357 5.348986 GGCGTTTTCCTCTTCTTTTCTTTT 58.651 37.500 0.00 0.00 0.00 2.27
4156 4358 5.810587 GGCGTTTTCCTCTTCTTTTCTTTTT 59.189 36.000 0.00 0.00 0.00 1.94
4345 4569 3.506096 CCACATCAGCAGCGGCAG 61.506 66.667 12.44 2.56 44.61 4.85
4346 4570 4.175489 CACATCAGCAGCGGCAGC 62.175 66.667 12.44 9.56 44.61 5.25
4568 4842 1.241315 AAAAACTCCGTGCCATCCCG 61.241 55.000 0.00 0.00 0.00 5.14
4573 4847 4.873129 CCGTGCCATCCCGAGACG 62.873 72.222 0.00 0.00 0.00 4.18
4784 5063 0.333652 TCACCCGTATCCCTCTGACA 59.666 55.000 0.00 0.00 0.00 3.58
4927 5221 2.359975 GGTACCAGCACCAGCACC 60.360 66.667 7.15 0.00 45.49 5.01
4928 5222 2.742372 GTACCAGCACCAGCACCG 60.742 66.667 0.00 0.00 45.49 4.94
4929 5223 4.015406 TACCAGCACCAGCACCGG 62.015 66.667 0.00 0.00 45.49 5.28
4978 5272 2.027073 CGACTTGGTTGCGCTGCTA 61.027 57.895 9.73 0.00 0.00 3.49
5035 5336 0.539051 AAAGCCTCGTCATCCTCCTG 59.461 55.000 0.00 0.00 0.00 3.86
5194 5501 5.767269 TGTTACGGTCACGAAGTTTGTATA 58.233 37.500 0.00 0.00 41.61 1.47
5195 5502 5.858049 TGTTACGGTCACGAAGTTTGTATAG 59.142 40.000 0.00 0.00 41.61 1.31
5196 5503 3.841643 ACGGTCACGAAGTTTGTATAGG 58.158 45.455 0.00 0.00 41.61 2.57
5197 5504 3.256631 ACGGTCACGAAGTTTGTATAGGT 59.743 43.478 0.00 0.00 41.61 3.08
5199 5506 4.687483 CGGTCACGAAGTTTGTATAGGTTT 59.313 41.667 0.00 0.00 41.61 3.27
5211 6006 6.884472 TTGTATAGGTTTTCATCTCTCCCA 57.116 37.500 0.00 0.00 0.00 4.37
5349 6148 3.304659 CCTTGGATTTGACGAACTTGGTG 60.305 47.826 0.00 0.00 0.00 4.17
5402 6291 2.409870 CGGTGGATCTGCAAAGGGC 61.410 63.158 0.00 0.00 45.13 5.19
5486 6376 1.129251 CGCACATAGCCAGTTTCTGTG 59.871 52.381 0.00 0.00 41.38 3.66
5550 6440 1.839354 TGCCATGCTCACTATTCCAGA 59.161 47.619 0.00 0.00 0.00 3.86
5554 6444 5.065914 GCCATGCTCACTATTCCAGAATAA 58.934 41.667 1.99 0.00 33.34 1.40
5562 6452 7.383843 GCTCACTATTCCAGAATAAGCTAGTTC 59.616 40.741 12.31 0.00 33.34 3.01
5581 6471 9.556030 GCTAGTTCTTGAACATAATTTACAACC 57.444 33.333 14.80 0.00 0.00 3.77
5608 6498 4.208873 GCGCTTAGATTTGAGATCAGACTG 59.791 45.833 0.00 0.00 0.00 3.51
5748 6726 8.150945 AGAAGAGAAGTTACACTGCTTGAAATA 58.849 33.333 0.00 0.00 33.16 1.40
5756 6734 7.339212 AGTTACACTGCTTGAAATATTGCCATA 59.661 33.333 0.00 0.00 0.00 2.74
6206 7190 0.107654 GCTACAAGCTGTTCCCGGAT 60.108 55.000 0.73 0.00 38.45 4.18
6230 7214 2.678190 GCTGAACTAAGTCCGGCAGAAT 60.678 50.000 0.00 0.00 0.00 2.40
6276 7260 3.686120 GCTACTACAGAGTACTCAGGGCT 60.686 52.174 24.44 4.05 37.10 5.19
6347 7335 1.179174 CGACAGTGAGGGTGACAGGA 61.179 60.000 0.00 0.00 0.00 3.86
6350 7338 0.605589 CAGTGAGGGTGACAGGAGAC 59.394 60.000 0.00 0.00 0.00 3.36
6444 7435 6.884295 TCTTTTCATCAAAGGTGTATAGGGTG 59.116 38.462 0.00 0.00 42.18 4.61
6569 7567 5.192522 ACCATCCATTGTCATCTCCTTTACT 59.807 40.000 0.00 0.00 0.00 2.24
6571 7569 5.359194 TCCATTGTCATCTCCTTTACTCC 57.641 43.478 0.00 0.00 0.00 3.85
6601 7599 8.717821 TCTTGTTTATGCTGAAATGTGTACTAC 58.282 33.333 0.00 0.00 0.00 2.73
6691 7689 5.692204 TCTGTTCGAAGATTCTTGACTGAAC 59.308 40.000 3.03 11.94 35.04 3.18
6717 7715 8.817100 CCTTTGGTTTCATGAAAAGTAAGAAAC 58.183 33.333 22.07 7.44 44.32 2.78
6826 7826 5.127682 AGCACAGCTTTATGGAAATAAAGGG 59.872 40.000 16.12 0.00 41.82 3.95
6921 7921 4.281941 AGTGTCAGTAGCAAGAAGTCATGA 59.718 41.667 0.00 0.00 0.00 3.07
7086 8086 3.686916 AAGAAGTACTCCCTCTGTTGC 57.313 47.619 0.00 0.00 0.00 4.17
7126 8126 8.569641 TGTAGTACCAATTGTTTGTCCATTTAC 58.430 33.333 4.43 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.025401 GACAACGGGGTGCGCTTG 62.025 66.667 9.73 6.07 0.00 4.01
6 7 4.250305 AGACAACGGGGTGCGCTT 62.250 61.111 9.73 0.00 0.00 4.68
7 8 4.681978 GAGACAACGGGGTGCGCT 62.682 66.667 9.73 0.00 0.00 5.92
10 11 2.775032 TAAGCGAGACAACGGGGTGC 62.775 60.000 0.00 0.00 0.00 5.01
11 12 0.320073 TTAAGCGAGACAACGGGGTG 60.320 55.000 0.00 0.00 0.00 4.61
12 13 0.393820 TTTAAGCGAGACAACGGGGT 59.606 50.000 0.00 0.00 0.00 4.95
13 14 1.196127 GTTTTAAGCGAGACAACGGGG 59.804 52.381 0.00 0.00 0.00 5.73
14 15 1.868498 TGTTTTAAGCGAGACAACGGG 59.132 47.619 0.00 0.00 0.00 5.28
15 16 3.246699 TCTTGTTTTAAGCGAGACAACGG 59.753 43.478 0.00 0.00 0.00 4.44
16 17 4.201576 GTCTTGTTTTAAGCGAGACAACG 58.798 43.478 19.72 0.00 43.43 4.10
20 21 4.318831 CCTGTGTCTTGTTTTAAGCGAGAC 60.319 45.833 18.38 18.38 43.95 3.36
21 22 3.807622 CCTGTGTCTTGTTTTAAGCGAGA 59.192 43.478 0.00 0.00 0.00 4.04
22 23 3.058914 CCCTGTGTCTTGTTTTAAGCGAG 60.059 47.826 0.00 0.00 0.00 5.03
23 24 2.875933 CCCTGTGTCTTGTTTTAAGCGA 59.124 45.455 0.00 0.00 0.00 4.93
24 25 2.031157 CCCCTGTGTCTTGTTTTAAGCG 60.031 50.000 0.00 0.00 0.00 4.68
25 26 2.288213 GCCCCTGTGTCTTGTTTTAAGC 60.288 50.000 0.00 0.00 0.00 3.09
26 27 2.031157 CGCCCCTGTGTCTTGTTTTAAG 60.031 50.000 0.00 0.00 0.00 1.85
27 28 1.950909 CGCCCCTGTGTCTTGTTTTAA 59.049 47.619 0.00 0.00 0.00 1.52
28 29 1.600023 CGCCCCTGTGTCTTGTTTTA 58.400 50.000 0.00 0.00 0.00 1.52
29 30 1.734388 GCGCCCCTGTGTCTTGTTTT 61.734 55.000 0.00 0.00 0.00 2.43
30 31 2.193536 GCGCCCCTGTGTCTTGTTT 61.194 57.895 0.00 0.00 0.00 2.83
31 32 2.594592 GCGCCCCTGTGTCTTGTT 60.595 61.111 0.00 0.00 0.00 2.83
32 33 4.643387 GGCGCCCCTGTGTCTTGT 62.643 66.667 18.11 0.00 0.00 3.16
42 43 2.113351 GGAATCTAAGGGCGCCCC 59.887 66.667 41.72 23.96 45.90 5.80
43 44 2.280865 CGGAATCTAAGGGCGCCC 60.281 66.667 39.29 39.29 0.00 6.13
44 45 2.973052 GCGGAATCTAAGGGCGCC 60.973 66.667 21.18 21.18 0.00 6.53
45 46 1.956678 GAGCGGAATCTAAGGGCGC 60.957 63.158 0.00 0.00 0.00 6.53
46 47 0.319125 GAGAGCGGAATCTAAGGGCG 60.319 60.000 0.00 0.00 0.00 6.13
47 48 0.753262 TGAGAGCGGAATCTAAGGGC 59.247 55.000 0.00 0.00 0.00 5.19
48 49 4.873746 TTATGAGAGCGGAATCTAAGGG 57.126 45.455 0.00 0.00 0.00 3.95
49 50 6.925211 TGTATTATGAGAGCGGAATCTAAGG 58.075 40.000 0.00 0.00 0.00 2.69
52 53 9.408648 TCATATGTATTATGAGAGCGGAATCTA 57.591 33.333 1.90 0.00 41.41 1.98
53 54 8.298729 TCATATGTATTATGAGAGCGGAATCT 57.701 34.615 1.90 0.00 41.41 2.40
82 83 9.729281 CCCACTCTTAAAGTTTAAATACCTACA 57.271 33.333 9.28 0.00 35.45 2.74
83 84 9.730705 ACCCACTCTTAAAGTTTAAATACCTAC 57.269 33.333 9.28 0.00 35.45 3.18
85 86 9.650714 AAACCCACTCTTAAAGTTTAAATACCT 57.349 29.630 9.28 0.00 35.45 3.08
89 90 8.139350 CCGAAAACCCACTCTTAAAGTTTAAAT 58.861 33.333 9.28 0.00 35.45 1.40
90 91 7.416551 CCCGAAAACCCACTCTTAAAGTTTAAA 60.417 37.037 9.28 1.10 35.45 1.52
91 92 6.039605 CCCGAAAACCCACTCTTAAAGTTTAA 59.960 38.462 7.80 7.80 35.45 1.52
92 93 5.532032 CCCGAAAACCCACTCTTAAAGTTTA 59.468 40.000 0.00 0.00 35.45 2.01
93 94 4.340097 CCCGAAAACCCACTCTTAAAGTTT 59.660 41.667 0.00 0.00 35.45 2.66
94 95 3.887110 CCCGAAAACCCACTCTTAAAGTT 59.113 43.478 0.00 0.00 35.45 2.66
95 96 3.483421 CCCGAAAACCCACTCTTAAAGT 58.517 45.455 0.00 0.00 39.44 2.66
96 97 2.817844 CCCCGAAAACCCACTCTTAAAG 59.182 50.000 0.00 0.00 0.00 1.85
97 98 2.489437 CCCCCGAAAACCCACTCTTAAA 60.489 50.000 0.00 0.00 0.00 1.52
98 99 1.074244 CCCCCGAAAACCCACTCTTAA 59.926 52.381 0.00 0.00 0.00 1.85
99 100 0.694196 CCCCCGAAAACCCACTCTTA 59.306 55.000 0.00 0.00 0.00 2.10
100 101 1.358051 ACCCCCGAAAACCCACTCTT 61.358 55.000 0.00 0.00 0.00 2.85
101 102 1.358051 AACCCCCGAAAACCCACTCT 61.358 55.000 0.00 0.00 0.00 3.24
102 103 0.401356 TAACCCCCGAAAACCCACTC 59.599 55.000 0.00 0.00 0.00 3.51
103 104 0.852155 TTAACCCCCGAAAACCCACT 59.148 50.000 0.00 0.00 0.00 4.00
104 105 1.250328 CTTAACCCCCGAAAACCCAC 58.750 55.000 0.00 0.00 0.00 4.61
105 106 0.852155 ACTTAACCCCCGAAAACCCA 59.148 50.000 0.00 0.00 0.00 4.51
106 107 1.614903 CAACTTAACCCCCGAAAACCC 59.385 52.381 0.00 0.00 0.00 4.11
107 108 2.034939 CACAACTTAACCCCCGAAAACC 59.965 50.000 0.00 0.00 0.00 3.27
108 109 2.034939 CCACAACTTAACCCCCGAAAAC 59.965 50.000 0.00 0.00 0.00 2.43
109 110 2.308690 CCACAACTTAACCCCCGAAAA 58.691 47.619 0.00 0.00 0.00 2.29
110 111 1.479021 CCCACAACTTAACCCCCGAAA 60.479 52.381 0.00 0.00 0.00 3.46
111 112 0.110869 CCCACAACTTAACCCCCGAA 59.889 55.000 0.00 0.00 0.00 4.30
112 113 0.767446 TCCCACAACTTAACCCCCGA 60.767 55.000 0.00 0.00 0.00 5.14
113 114 0.110869 TTCCCACAACTTAACCCCCG 59.889 55.000 0.00 0.00 0.00 5.73
114 115 1.624336 GTTCCCACAACTTAACCCCC 58.376 55.000 0.00 0.00 0.00 5.40
115 116 1.202794 TCGTTCCCACAACTTAACCCC 60.203 52.381 0.00 0.00 0.00 4.95
116 117 2.148768 CTCGTTCCCACAACTTAACCC 58.851 52.381 0.00 0.00 0.00 4.11
117 118 3.116079 TCTCGTTCCCACAACTTAACC 57.884 47.619 0.00 0.00 0.00 2.85
118 119 5.717119 TCTATCTCGTTCCCACAACTTAAC 58.283 41.667 0.00 0.00 0.00 2.01
119 120 5.479375 ACTCTATCTCGTTCCCACAACTTAA 59.521 40.000 0.00 0.00 0.00 1.85
120 121 5.014858 ACTCTATCTCGTTCCCACAACTTA 58.985 41.667 0.00 0.00 0.00 2.24
121 122 3.833070 ACTCTATCTCGTTCCCACAACTT 59.167 43.478 0.00 0.00 0.00 2.66
122 123 3.432378 ACTCTATCTCGTTCCCACAACT 58.568 45.455 0.00 0.00 0.00 3.16
123 124 3.870633 ACTCTATCTCGTTCCCACAAC 57.129 47.619 0.00 0.00 0.00 3.32
124 125 3.616560 GCAACTCTATCTCGTTCCCACAA 60.617 47.826 0.00 0.00 0.00 3.33
125 126 2.094182 GCAACTCTATCTCGTTCCCACA 60.094 50.000 0.00 0.00 0.00 4.17
126 127 2.166664 AGCAACTCTATCTCGTTCCCAC 59.833 50.000 0.00 0.00 0.00 4.61
127 128 2.427453 GAGCAACTCTATCTCGTTCCCA 59.573 50.000 0.00 0.00 0.00 4.37
128 129 2.691011 AGAGCAACTCTATCTCGTTCCC 59.309 50.000 0.00 0.00 39.28 3.97
129 130 3.378742 TGAGAGCAACTCTATCTCGTTCC 59.621 47.826 11.18 0.00 41.35 3.62
130 131 4.624336 TGAGAGCAACTCTATCTCGTTC 57.376 45.455 11.18 0.00 41.35 3.95
131 132 5.590530 ATTGAGAGCAACTCTATCTCGTT 57.409 39.130 11.18 0.00 41.35 3.85
132 133 5.590530 AATTGAGAGCAACTCTATCTCGT 57.409 39.130 11.18 0.00 41.35 4.18
133 134 6.499172 TGTAATTGAGAGCAACTCTATCTCG 58.501 40.000 11.18 0.00 41.35 4.04
134 135 7.223777 GGTTGTAATTGAGAGCAACTCTATCTC 59.776 40.741 11.18 1.93 41.35 2.75
135 136 7.044798 GGTTGTAATTGAGAGCAACTCTATCT 58.955 38.462 11.18 0.00 41.35 1.98
136 137 6.818644 TGGTTGTAATTGAGAGCAACTCTATC 59.181 38.462 11.18 1.76 41.35 2.08
137 138 6.711277 TGGTTGTAATTGAGAGCAACTCTAT 58.289 36.000 11.18 7.12 41.35 1.98
138 139 6.109156 TGGTTGTAATTGAGAGCAACTCTA 57.891 37.500 11.18 5.33 41.35 2.43
139 140 4.973168 TGGTTGTAATTGAGAGCAACTCT 58.027 39.130 11.18 0.00 44.28 3.24
140 141 5.470098 TCTTGGTTGTAATTGAGAGCAACTC 59.530 40.000 0.00 4.35 45.11 3.01
141 142 5.376625 TCTTGGTTGTAATTGAGAGCAACT 58.623 37.500 0.00 0.00 40.49 3.16
142 143 5.689383 TCTTGGTTGTAATTGAGAGCAAC 57.311 39.130 0.00 0.00 40.08 4.17
143 144 5.009610 GGTTCTTGGTTGTAATTGAGAGCAA 59.990 40.000 0.00 0.00 38.60 3.91
144 145 4.518970 GGTTCTTGGTTGTAATTGAGAGCA 59.481 41.667 0.00 0.00 0.00 4.26
145 146 4.518970 TGGTTCTTGGTTGTAATTGAGAGC 59.481 41.667 0.00 0.00 0.00 4.09
146 147 5.530915 TGTGGTTCTTGGTTGTAATTGAGAG 59.469 40.000 0.00 0.00 0.00 3.20
147 148 5.441500 TGTGGTTCTTGGTTGTAATTGAGA 58.558 37.500 0.00 0.00 0.00 3.27
148 149 5.766150 TGTGGTTCTTGGTTGTAATTGAG 57.234 39.130 0.00 0.00 0.00 3.02
149 150 5.010516 CCATGTGGTTCTTGGTTGTAATTGA 59.989 40.000 0.00 0.00 36.83 2.57
150 151 5.229423 CCATGTGGTTCTTGGTTGTAATTG 58.771 41.667 0.00 0.00 36.83 2.32
151 152 4.262420 GCCATGTGGTTCTTGGTTGTAATT 60.262 41.667 0.35 0.00 41.61 1.40
152 153 3.258123 GCCATGTGGTTCTTGGTTGTAAT 59.742 43.478 0.35 0.00 41.61 1.89
153 154 2.625790 GCCATGTGGTTCTTGGTTGTAA 59.374 45.455 0.35 0.00 41.61 2.41
154 155 2.235016 GCCATGTGGTTCTTGGTTGTA 58.765 47.619 0.35 0.00 41.61 2.41
155 156 1.039856 GCCATGTGGTTCTTGGTTGT 58.960 50.000 0.35 0.00 41.61 3.32
156 157 1.039068 TGCCATGTGGTTCTTGGTTG 58.961 50.000 0.35 0.00 41.61 3.77
157 158 2.014010 ATGCCATGTGGTTCTTGGTT 57.986 45.000 0.35 0.00 41.61 3.67
158 159 2.897271 TATGCCATGTGGTTCTTGGT 57.103 45.000 0.35 0.00 41.61 3.67
159 160 3.025978 ACATATGCCATGTGGTTCTTGG 58.974 45.455 6.38 0.00 42.22 3.61
160 161 4.036567 CACATATGCCATGTGGTTCTTG 57.963 45.455 16.87 0.00 44.04 3.02
167 168 3.216800 AGCTTACCACATATGCCATGTG 58.783 45.455 17.45 17.45 46.49 3.21
168 169 3.582998 AGCTTACCACATATGCCATGT 57.417 42.857 1.58 0.00 35.07 3.21
169 170 5.247862 TGATAGCTTACCACATATGCCATG 58.752 41.667 1.58 0.00 35.07 3.66
170 171 5.503634 TGATAGCTTACCACATATGCCAT 57.496 39.130 1.58 0.00 35.07 4.40
171 172 4.972751 TGATAGCTTACCACATATGCCA 57.027 40.909 1.58 0.00 35.07 4.92
172 173 5.491070 TCATGATAGCTTACCACATATGCC 58.509 41.667 1.58 0.00 35.07 4.40
173 174 7.388776 TCTTTCATGATAGCTTACCACATATGC 59.611 37.037 8.19 0.00 34.79 3.14
174 175 8.837788 TCTTTCATGATAGCTTACCACATATG 57.162 34.615 8.19 0.00 0.00 1.78
175 176 9.277783 GTTCTTTCATGATAGCTTACCACATAT 57.722 33.333 8.19 0.00 0.00 1.78
176 177 8.264347 TGTTCTTTCATGATAGCTTACCACATA 58.736 33.333 8.19 0.00 0.00 2.29
177 178 7.066284 GTGTTCTTTCATGATAGCTTACCACAT 59.934 37.037 8.19 0.00 0.00 3.21
178 179 6.371548 GTGTTCTTTCATGATAGCTTACCACA 59.628 38.462 8.19 2.50 0.00 4.17
179 180 6.183360 GGTGTTCTTTCATGATAGCTTACCAC 60.183 42.308 18.37 14.02 0.00 4.16
180 181 5.880332 GGTGTTCTTTCATGATAGCTTACCA 59.120 40.000 18.37 6.74 0.00 3.25
181 182 6.116126 AGGTGTTCTTTCATGATAGCTTACC 58.884 40.000 16.88 16.88 0.00 2.85
182 183 8.718102 TTAGGTGTTCTTTCATGATAGCTTAC 57.282 34.615 8.19 7.00 0.00 2.34
183 184 9.733556 TTTTAGGTGTTCTTTCATGATAGCTTA 57.266 29.630 8.19 0.00 0.00 3.09
184 185 8.635765 TTTTAGGTGTTCTTTCATGATAGCTT 57.364 30.769 8.19 0.00 0.00 3.74
185 186 8.635765 TTTTTAGGTGTTCTTTCATGATAGCT 57.364 30.769 8.19 0.00 0.00 3.32
207 208 4.502105 AGGTTTTGGGCAAGTCATTTTT 57.498 36.364 0.00 0.00 0.00 1.94
208 209 4.164030 AGAAGGTTTTGGGCAAGTCATTTT 59.836 37.500 0.00 0.00 0.00 1.82
209 210 3.711190 AGAAGGTTTTGGGCAAGTCATTT 59.289 39.130 0.00 0.00 0.00 2.32
210 211 3.308401 AGAAGGTTTTGGGCAAGTCATT 58.692 40.909 0.00 0.00 0.00 2.57
211 212 2.962859 AGAAGGTTTTGGGCAAGTCAT 58.037 42.857 0.00 0.00 0.00 3.06
212 213 2.452600 AGAAGGTTTTGGGCAAGTCA 57.547 45.000 0.00 0.00 0.00 3.41
213 214 3.492656 GGAAAGAAGGTTTTGGGCAAGTC 60.493 47.826 0.00 0.00 0.00 3.01
214 215 2.434336 GGAAAGAAGGTTTTGGGCAAGT 59.566 45.455 0.00 0.00 0.00 3.16
215 216 2.700371 AGGAAAGAAGGTTTTGGGCAAG 59.300 45.455 0.00 0.00 0.00 4.01
216 217 2.758130 AGGAAAGAAGGTTTTGGGCAA 58.242 42.857 0.00 0.00 0.00 4.52
217 218 2.433970 CAAGGAAAGAAGGTTTTGGGCA 59.566 45.455 0.00 0.00 0.00 5.36
218 219 2.434336 ACAAGGAAAGAAGGTTTTGGGC 59.566 45.455 0.00 0.00 0.00 5.36
219 220 4.893524 AGTACAAGGAAAGAAGGTTTTGGG 59.106 41.667 0.00 0.00 0.00 4.12
220 221 5.736207 GCAGTACAAGGAAAGAAGGTTTTGG 60.736 44.000 0.00 0.00 0.00 3.28
221 222 5.067805 AGCAGTACAAGGAAAGAAGGTTTTG 59.932 40.000 0.00 0.00 0.00 2.44
222 223 5.201243 AGCAGTACAAGGAAAGAAGGTTTT 58.799 37.500 0.00 0.00 0.00 2.43
223 224 4.793201 AGCAGTACAAGGAAAGAAGGTTT 58.207 39.130 0.00 0.00 0.00 3.27
224 225 4.390264 GAGCAGTACAAGGAAAGAAGGTT 58.610 43.478 0.00 0.00 0.00 3.50
225 226 3.244596 GGAGCAGTACAAGGAAAGAAGGT 60.245 47.826 0.00 0.00 0.00 3.50
226 227 3.339141 GGAGCAGTACAAGGAAAGAAGG 58.661 50.000 0.00 0.00 0.00 3.46
227 228 2.996621 CGGAGCAGTACAAGGAAAGAAG 59.003 50.000 0.00 0.00 0.00 2.85
228 229 2.289444 CCGGAGCAGTACAAGGAAAGAA 60.289 50.000 0.00 0.00 0.00 2.52
229 230 1.275291 CCGGAGCAGTACAAGGAAAGA 59.725 52.381 0.00 0.00 0.00 2.52
230 231 1.275291 TCCGGAGCAGTACAAGGAAAG 59.725 52.381 0.00 0.00 0.00 2.62
231 232 1.344065 TCCGGAGCAGTACAAGGAAA 58.656 50.000 0.00 0.00 0.00 3.13
232 233 1.480954 GATCCGGAGCAGTACAAGGAA 59.519 52.381 16.44 0.00 0.00 3.36
233 234 1.112113 GATCCGGAGCAGTACAAGGA 58.888 55.000 16.44 0.00 0.00 3.36
234 235 0.105039 GGATCCGGAGCAGTACAAGG 59.895 60.000 23.22 0.00 0.00 3.61
235 236 1.115467 AGGATCCGGAGCAGTACAAG 58.885 55.000 23.22 0.00 0.00 3.16
236 237 2.029623 GTAGGATCCGGAGCAGTACAA 58.970 52.381 23.22 0.00 0.00 2.41
237 238 1.214673 AGTAGGATCCGGAGCAGTACA 59.785 52.381 23.22 0.00 0.00 2.90
238 239 1.984066 AGTAGGATCCGGAGCAGTAC 58.016 55.000 23.22 20.65 0.00 2.73
239 240 2.175069 AGAAGTAGGATCCGGAGCAGTA 59.825 50.000 23.22 9.55 0.00 2.74
240 241 1.063567 AGAAGTAGGATCCGGAGCAGT 60.064 52.381 23.22 10.67 0.00 4.40
241 242 1.698506 AGAAGTAGGATCCGGAGCAG 58.301 55.000 23.22 0.00 0.00 4.24
242 243 2.160721 AAGAAGTAGGATCCGGAGCA 57.839 50.000 23.22 0.00 0.00 4.26
243 244 3.545366 AAAAGAAGTAGGATCCGGAGC 57.455 47.619 12.38 12.38 0.00 4.70
244 245 8.123639 TCATATAAAAGAAGTAGGATCCGGAG 57.876 38.462 11.34 0.00 0.00 4.63
245 246 8.486942 TTCATATAAAAGAAGTAGGATCCGGA 57.513 34.615 6.61 6.61 0.00 5.14
246 247 8.989980 GTTTCATATAAAAGAAGTAGGATCCGG 58.010 37.037 5.98 0.00 0.00 5.14
247 248 9.765795 AGTTTCATATAAAAGAAGTAGGATCCG 57.234 33.333 5.98 0.00 0.00 4.18
250 251 9.765795 CGGAGTTTCATATAAAAGAAGTAGGAT 57.234 33.333 0.00 0.00 0.00 3.24
251 252 8.202137 CCGGAGTTTCATATAAAAGAAGTAGGA 58.798 37.037 0.00 0.00 0.00 2.94
252 253 8.202137 TCCGGAGTTTCATATAAAAGAAGTAGG 58.798 37.037 0.00 0.00 0.00 3.18
253 254 9.595823 TTCCGGAGTTTCATATAAAAGAAGTAG 57.404 33.333 3.34 0.00 0.00 2.57
254 255 9.374838 GTTCCGGAGTTTCATATAAAAGAAGTA 57.625 33.333 3.34 0.00 0.00 2.24
255 256 7.336176 GGTTCCGGAGTTTCATATAAAAGAAGT 59.664 37.037 3.34 0.00 0.00 3.01
256 257 7.553044 AGGTTCCGGAGTTTCATATAAAAGAAG 59.447 37.037 3.34 0.00 0.00 2.85
257 258 7.399634 AGGTTCCGGAGTTTCATATAAAAGAA 58.600 34.615 3.34 0.00 0.00 2.52
258 259 6.954232 AGGTTCCGGAGTTTCATATAAAAGA 58.046 36.000 3.34 0.00 0.00 2.52
259 260 8.904099 ATAGGTTCCGGAGTTTCATATAAAAG 57.096 34.615 3.34 0.00 0.00 2.27
260 261 9.116067 CAATAGGTTCCGGAGTTTCATATAAAA 57.884 33.333 3.34 0.00 0.00 1.52
261 262 7.717875 CCAATAGGTTCCGGAGTTTCATATAAA 59.282 37.037 3.34 0.00 0.00 1.40
262 263 7.221450 CCAATAGGTTCCGGAGTTTCATATAA 58.779 38.462 3.34 0.00 0.00 0.98
263 264 6.743208 GCCAATAGGTTCCGGAGTTTCATATA 60.743 42.308 3.34 0.00 37.19 0.86
264 265 5.621193 CCAATAGGTTCCGGAGTTTCATAT 58.379 41.667 3.34 2.10 0.00 1.78
265 266 4.685030 GCCAATAGGTTCCGGAGTTTCATA 60.685 45.833 3.34 0.00 37.19 2.15
266 267 3.886123 CCAATAGGTTCCGGAGTTTCAT 58.114 45.455 3.34 0.00 0.00 2.57
267 268 2.617021 GCCAATAGGTTCCGGAGTTTCA 60.617 50.000 3.34 0.00 37.19 2.69
268 269 2.014857 GCCAATAGGTTCCGGAGTTTC 58.985 52.381 3.34 0.00 37.19 2.78
269 270 1.633945 AGCCAATAGGTTCCGGAGTTT 59.366 47.619 3.34 0.00 37.19 2.66
270 271 1.065418 CAGCCAATAGGTTCCGGAGTT 60.065 52.381 3.34 0.00 37.19 3.01
285 286 1.921982 ATGTGTATTTGTGCCAGCCA 58.078 45.000 0.00 0.00 0.00 4.75
288 289 5.125257 TGTCCAATATGTGTATTTGTGCCAG 59.875 40.000 0.00 0.00 0.00 4.85
436 437 5.015284 AGCTTTGGGGAGTATTTAGAAAGGT 59.985 40.000 0.00 0.00 0.00 3.50
478 479 6.532365 TTTGGCGTTTTTATCAACAAATCC 57.468 33.333 0.00 0.00 0.00 3.01
479 480 6.070829 GCTTTGGCGTTTTTATCAACAAATC 58.929 36.000 0.00 0.00 0.00 2.17
481 482 5.006165 CAGCTTTGGCGTTTTTATCAACAAA 59.994 36.000 0.00 0.00 44.37 2.83
482 483 4.505922 CAGCTTTGGCGTTTTTATCAACAA 59.494 37.500 0.00 0.00 44.37 2.83
483 484 4.047822 CAGCTTTGGCGTTTTTATCAACA 58.952 39.130 0.00 0.00 44.37 3.33
484 485 3.428534 CCAGCTTTGGCGTTTTTATCAAC 59.571 43.478 0.00 0.00 44.37 3.18
485 486 3.319405 TCCAGCTTTGGCGTTTTTATCAA 59.681 39.130 0.00 0.00 44.37 2.57
486 487 2.887783 TCCAGCTTTGGCGTTTTTATCA 59.112 40.909 0.00 0.00 44.37 2.15
487 488 3.569250 TCCAGCTTTGGCGTTTTTATC 57.431 42.857 0.00 0.00 44.37 1.75
488 489 4.055360 GTTTCCAGCTTTGGCGTTTTTAT 58.945 39.130 0.00 0.00 44.37 1.40
489 490 3.131400 AGTTTCCAGCTTTGGCGTTTTTA 59.869 39.130 0.00 0.00 44.37 1.52
666 678 4.408821 TGTCCAGTGCATCGGGCC 62.409 66.667 6.51 0.00 43.89 5.80
855 877 3.230134 GTGGATGCAGAGATAGAGAGGT 58.770 50.000 0.00 0.00 0.00 3.85
857 879 2.562298 GGGTGGATGCAGAGATAGAGAG 59.438 54.545 0.00 0.00 0.00 3.20
858 880 2.603021 GGGTGGATGCAGAGATAGAGA 58.397 52.381 0.00 0.00 0.00 3.10
859 881 1.271934 CGGGTGGATGCAGAGATAGAG 59.728 57.143 0.00 0.00 0.00 2.43
860 882 1.332195 CGGGTGGATGCAGAGATAGA 58.668 55.000 0.00 0.00 0.00 1.98
862 884 1.496060 AACGGGTGGATGCAGAGATA 58.504 50.000 0.00 0.00 0.00 1.98
868 890 1.280710 ACAGATAAACGGGTGGATGCA 59.719 47.619 0.00 0.00 0.00 3.96
869 891 1.940613 GACAGATAAACGGGTGGATGC 59.059 52.381 0.00 0.00 0.00 3.91
876 898 3.195825 ACTTGGAGAGACAGATAAACGGG 59.804 47.826 0.00 0.00 0.00 5.28
879 901 6.524101 AGAGACTTGGAGAGACAGATAAAC 57.476 41.667 0.00 0.00 0.00 2.01
881 903 9.567776 CTTATAGAGACTTGGAGAGACAGATAA 57.432 37.037 0.00 0.00 0.00 1.75
882 904 7.663905 GCTTATAGAGACTTGGAGAGACAGATA 59.336 40.741 0.00 0.00 0.00 1.98
886 908 5.761205 AGCTTATAGAGACTTGGAGAGACA 58.239 41.667 0.00 0.00 0.00 3.41
961 983 0.109597 GCTTGCGAAATGTGGTGAGG 60.110 55.000 0.00 0.00 0.00 3.86
1030 1052 9.114952 GGATAGTAGAAGAAAAATCAAGAAGGG 57.885 37.037 0.00 0.00 0.00 3.95
1067 1089 0.820891 GCCATGTCCATAGCCACTGG 60.821 60.000 0.00 0.00 34.93 4.00
1227 1249 1.645704 CGATGTCGACGGAGACCACT 61.646 60.000 11.62 0.00 43.02 4.00
1230 1252 2.278013 GCGATGTCGACGGAGACC 60.278 66.667 11.62 0.00 43.02 3.85
1524 1546 2.038837 GCCGCCAAGGTCAAGGTAC 61.039 63.158 0.00 0.00 43.70 3.34
1799 1821 3.134792 TGTCGAGAGAGGCGAGCC 61.135 66.667 5.89 5.89 43.49 4.70
1809 1831 1.579932 GAGGAACAGCGTGTCGAGA 59.420 57.895 0.00 0.00 0.00 4.04
2400 2428 0.836606 TGTTGGACAGGTTGAGCTGA 59.163 50.000 16.31 0.00 0.00 4.26
2649 2677 0.542938 CGATGGCCTCTGGGATAGGA 60.543 60.000 3.32 0.00 36.08 2.94
2652 2680 3.471620 GCGATGGCCTCTGGGATA 58.528 61.111 3.32 0.00 33.58 2.59
2679 2710 3.073062 ACAGGTTGAGGTAATTCAGCACT 59.927 43.478 0.00 0.00 30.80 4.40
3093 3173 1.185315 TCATGCACTCGATCACCTCA 58.815 50.000 0.00 0.00 0.00 3.86
3653 3779 2.676750 GCAATCAGTGTGGACGGATGTA 60.677 50.000 0.00 0.00 37.13 2.29
3654 3780 1.945819 GCAATCAGTGTGGACGGATGT 60.946 52.381 0.00 0.00 37.13 3.06
3675 3804 2.729360 TGTAACGAGACGTGAAATGCTG 59.271 45.455 0.00 0.00 39.99 4.41
3707 3836 7.254117 CGATATGCGACTAGAGACAAAAACAAT 60.254 37.037 0.00 0.00 44.57 2.71
3728 3858 0.987294 ATAGGCAGGCAAGGCGATAT 59.013 50.000 0.00 0.00 39.37 1.63
3890 4024 4.386049 CAGACGTTCACTTGTCCTTATGTC 59.614 45.833 0.00 0.00 35.71 3.06
3894 4028 4.866508 ATCAGACGTTCACTTGTCCTTA 57.133 40.909 0.00 0.00 35.71 2.69
3895 4029 3.753294 ATCAGACGTTCACTTGTCCTT 57.247 42.857 0.00 0.00 35.71 3.36
3907 4044 2.334838 GCGACAAACCTAATCAGACGT 58.665 47.619 0.00 0.00 0.00 4.34
3974 4112 9.558396 GACATACTAGTACTAACCACTATCACT 57.442 37.037 4.31 0.00 0.00 3.41
3994 4135 3.868077 GTGAGGCAGACAATGAGACATAC 59.132 47.826 0.00 0.00 0.00 2.39
4032 4229 1.281656 GACCAAAAGTTCCCGTGCG 59.718 57.895 0.00 0.00 0.00 5.34
4039 4236 2.842457 ACGTACTGGGACCAAAAGTTC 58.158 47.619 0.00 0.00 0.00 3.01
4118 4320 0.677842 AACGCCCAAGAAGACGTACT 59.322 50.000 0.00 0.00 37.87 2.73
4120 4322 2.137523 GAAAACGCCCAAGAAGACGTA 58.862 47.619 0.00 0.00 37.87 3.57
4121 4323 0.942252 GAAAACGCCCAAGAAGACGT 59.058 50.000 0.00 0.00 41.16 4.34
4122 4324 0.237498 GGAAAACGCCCAAGAAGACG 59.763 55.000 0.00 0.00 0.00 4.18
4123 4325 1.535896 GAGGAAAACGCCCAAGAAGAC 59.464 52.381 0.00 0.00 0.00 3.01
4124 4326 1.420138 AGAGGAAAACGCCCAAGAAGA 59.580 47.619 0.00 0.00 0.00 2.87
4125 4327 1.897560 AGAGGAAAACGCCCAAGAAG 58.102 50.000 0.00 0.00 0.00 2.85
4126 4328 2.158667 AGAAGAGGAAAACGCCCAAGAA 60.159 45.455 0.00 0.00 0.00 2.52
4130 4332 2.358322 AAAGAAGAGGAAAACGCCCA 57.642 45.000 0.00 0.00 0.00 5.36
4131 4333 2.885266 AGAAAAGAAGAGGAAAACGCCC 59.115 45.455 0.00 0.00 0.00 6.13
4132 4334 4.569761 AAGAAAAGAAGAGGAAAACGCC 57.430 40.909 0.00 0.00 0.00 5.68
4133 4335 6.887376 AAAAAGAAAAGAAGAGGAAAACGC 57.113 33.333 0.00 0.00 0.00 4.84
4154 4356 5.123820 CCCGAGCTGACATATTTTCTCAAAA 59.876 40.000 0.00 0.00 34.41 2.44
4155 4357 4.635765 CCCGAGCTGACATATTTTCTCAAA 59.364 41.667 0.00 0.00 0.00 2.69
4156 4358 4.191544 CCCGAGCTGACATATTTTCTCAA 58.808 43.478 0.00 0.00 0.00 3.02
4157 4359 3.197766 ACCCGAGCTGACATATTTTCTCA 59.802 43.478 0.00 0.00 0.00 3.27
4158 4360 3.557595 CACCCGAGCTGACATATTTTCTC 59.442 47.826 0.00 0.00 0.00 2.87
4159 4361 3.055094 ACACCCGAGCTGACATATTTTCT 60.055 43.478 0.00 0.00 0.00 2.52
4162 4364 2.027192 ACACACCCGAGCTGACATATTT 60.027 45.455 0.00 0.00 0.00 1.40
4165 4367 1.749063 CTACACACCCGAGCTGACATA 59.251 52.381 0.00 0.00 0.00 2.29
4166 4368 0.532573 CTACACACCCGAGCTGACAT 59.467 55.000 0.00 0.00 0.00 3.06
4167 4369 0.826256 ACTACACACCCGAGCTGACA 60.826 55.000 0.00 0.00 0.00 3.58
4168 4370 0.317479 AACTACACACCCGAGCTGAC 59.683 55.000 0.00 0.00 0.00 3.51
4169 4371 1.045407 AAACTACACACCCGAGCTGA 58.955 50.000 0.00 0.00 0.00 4.26
4170 4372 1.531149 CAAAACTACACACCCGAGCTG 59.469 52.381 0.00 0.00 0.00 4.24
4171 4373 1.414919 TCAAAACTACACACCCGAGCT 59.585 47.619 0.00 0.00 0.00 4.09
4172 4374 1.873698 TCAAAACTACACACCCGAGC 58.126 50.000 0.00 0.00 0.00 5.03
4173 4375 4.320202 CCATTTCAAAACTACACACCCGAG 60.320 45.833 0.00 0.00 0.00 4.63
4174 4376 3.566322 CCATTTCAAAACTACACACCCGA 59.434 43.478 0.00 0.00 0.00 5.14
4175 4377 3.305064 CCCATTTCAAAACTACACACCCG 60.305 47.826 0.00 0.00 0.00 5.28
4176 4378 3.006430 CCCCATTTCAAAACTACACACCC 59.994 47.826 0.00 0.00 0.00 4.61
4493 4727 1.891919 GCGACTTGTGTTGGCCAGA 60.892 57.895 5.11 0.00 0.00 3.86
4659 4933 1.299316 CGGTCCACACACGTACGTT 60.299 57.895 20.23 7.73 0.00 3.99
4883 5165 8.455682 CAATAATACCTACCGTGTCATGTTTTT 58.544 33.333 0.00 0.00 0.00 1.94
4884 5166 7.066525 CCAATAATACCTACCGTGTCATGTTTT 59.933 37.037 0.00 0.00 0.00 2.43
4885 5167 6.540914 CCAATAATACCTACCGTGTCATGTTT 59.459 38.462 0.00 0.00 0.00 2.83
4888 5170 4.994852 CCCAATAATACCTACCGTGTCATG 59.005 45.833 0.00 0.00 0.00 3.07
4938 5232 1.221021 CTGACCTAAAGGGCCGTCC 59.779 63.158 0.00 0.00 44.80 4.79
4939 5233 1.221021 CCTGACCTAAAGGGCCGTC 59.779 63.158 0.00 0.00 44.80 4.79
4978 5272 1.774254 TCCCATGCCGGTCAAAGATAT 59.226 47.619 1.90 0.00 0.00 1.63
5001 5295 2.901839 AGGCTTTTTACCGGAGTGAGTA 59.098 45.455 9.46 0.00 0.00 2.59
5194 5501 3.517500 GAGAGTGGGAGAGATGAAAACCT 59.482 47.826 0.00 0.00 0.00 3.50
5195 5502 3.517500 AGAGAGTGGGAGAGATGAAAACC 59.482 47.826 0.00 0.00 0.00 3.27
5196 5503 4.466015 AGAGAGAGTGGGAGAGATGAAAAC 59.534 45.833 0.00 0.00 0.00 2.43
5197 5504 4.465660 CAGAGAGAGTGGGAGAGATGAAAA 59.534 45.833 0.00 0.00 0.00 2.29
5199 5506 3.630168 CAGAGAGAGTGGGAGAGATGAA 58.370 50.000 0.00 0.00 0.00 2.57
5211 6006 4.037327 GCAAAAAGGAAAAGCAGAGAGAGT 59.963 41.667 0.00 0.00 0.00 3.24
5349 6148 9.494271 CCCATACATATGCACATAGTATATTCC 57.506 37.037 1.58 0.00 33.85 3.01
5377 6266 0.465705 TGCAGATCCACCGGAATCTC 59.534 55.000 9.46 8.23 34.34 2.75
5416 6305 0.807667 CTGCGACGAATCCCAAGAGG 60.808 60.000 0.00 0.00 0.00 3.69
5486 6376 3.605692 GCTACGCTGCTGATTTGAATAGC 60.606 47.826 0.00 0.00 37.93 2.97
5545 6435 7.004555 TGTTCAAGAACTAGCTTATTCTGGA 57.995 36.000 13.49 11.38 41.67 3.86
5562 6452 6.194508 CGCGATGGTTGTAAATTATGTTCAAG 59.805 38.462 0.00 0.00 0.00 3.02
5577 6467 2.351418 TCAAATCTAAGCGCGATGGTTG 59.649 45.455 12.10 4.80 39.04 3.77
5581 6471 3.737774 TGATCTCAAATCTAAGCGCGATG 59.262 43.478 12.10 0.00 0.00 3.84
5748 6726 7.578189 GCCTGCTAATCACATTATTATGGCAAT 60.578 37.037 0.00 0.00 35.05 3.56
5756 6734 5.192327 GCAAGCCTGCTAATCACATTATT 57.808 39.130 0.00 0.00 45.74 1.40
5782 6760 2.031560 TCTGCAACAAACACGATCACAC 59.968 45.455 0.00 0.00 0.00 3.82
6173 7157 0.324943 TGTAGCAGTTGGGCTCCTTC 59.675 55.000 0.00 0.00 44.54 3.46
6206 7190 0.246635 GCCGGACTTAGTTCAGCAGA 59.753 55.000 5.05 0.00 0.00 4.26
6230 7214 5.119931 ACGTCAATTTGCTGCTTGATTTA 57.880 34.783 0.00 0.00 34.18 1.40
6276 7260 6.119536 CCCCAATTAGTAGTGCTGTAATTCA 58.880 40.000 0.00 0.00 0.00 2.57
6347 7335 2.304761 TGTTTATTGCTCTTCCCCGTCT 59.695 45.455 0.00 0.00 0.00 4.18
6350 7338 3.016736 ACATGTTTATTGCTCTTCCCCG 58.983 45.455 0.00 0.00 0.00 5.73
6444 7435 7.201866 CCCTAGATGGTAGTAGCATATGATCAC 60.202 44.444 17.51 3.81 36.31 3.06
6569 7567 6.265196 ACATTTCAGCATAAACAAGAACTGGA 59.735 34.615 0.00 0.00 0.00 3.86
6571 7569 6.919662 ACACATTTCAGCATAAACAAGAACTG 59.080 34.615 0.00 0.00 0.00 3.16
6601 7599 3.963428 AAAGCTGTGGAGTAGTACTGG 57.037 47.619 7.76 0.00 0.00 4.00
6691 7689 8.817100 GTTTCTTACTTTTCATGAAACCAAAGG 58.183 33.333 20.35 9.47 39.99 3.11
6826 7826 3.878160 TTTCGCCATATTTTTGACCCC 57.122 42.857 0.00 0.00 0.00 4.95
6921 7921 6.389830 TGTGATCAGTGCAATTGTTACTTT 57.610 33.333 7.40 2.82 0.00 2.66
6961 7961 6.538742 GCATCTTTGCCTTGTACTATGTTCTA 59.461 38.462 0.00 0.00 43.38 2.10
7086 8086 4.159693 TGGTACTACAATACACCTCTGCTG 59.840 45.833 0.00 0.00 32.04 4.41
7126 8126 3.283751 ACTCCTACTGCTACTGCTACTG 58.716 50.000 0.00 0.00 40.48 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.