Multiple sequence alignment - TraesCS4D01G085100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G085100 chr4D 100.000 4711 0 0 1 4711 59621464 59626174 0.000000e+00 8700.0
1 TraesCS4D01G085100 chr4D 97.826 46 1 0 474 519 123351333 123351378 3.910000e-11 80.5
2 TraesCS4D01G085100 chr4D 97.826 46 1 0 474 519 123699025 123698980 3.910000e-11 80.5
3 TraesCS4D01G085100 chr4D 97.826 46 1 0 474 519 240993569 240993524 3.910000e-11 80.5
4 TraesCS4D01G085100 chr4A 94.282 3760 124 41 560 4276 536796033 536792322 0.000000e+00 5668.0
5 TraesCS4D01G085100 chr4A 92.746 193 13 1 4507 4699 536791146 536790955 1.290000e-70 278.0
6 TraesCS4D01G085100 chr4A 91.765 170 8 2 4332 4500 536792313 536792149 1.020000e-56 231.0
7 TraesCS4D01G085100 chr4B 94.597 3313 115 28 578 3858 89000554 89003834 0.000000e+00 5068.0
8 TraesCS4D01G085100 chr4B 91.010 812 41 10 3917 4706 89005287 89006088 0.000000e+00 1066.0
9 TraesCS4D01G085100 chr4B 80.676 207 24 15 14 213 5012641 5012838 3.800000e-31 147.0
10 TraesCS4D01G085100 chr4B 91.803 61 5 0 518 578 89379068 89379008 8.400000e-13 86.1
11 TraesCS4D01G085100 chrUn 92.308 221 16 1 1 221 89848608 89848827 3.540000e-81 313.0
12 TraesCS4D01G085100 chrUn 98.788 165 2 0 314 478 216514406 216514570 1.280000e-75 294.0
13 TraesCS4D01G085100 chrUn 98.788 165 2 0 314 478 286268977 286268813 1.280000e-75 294.0
14 TraesCS4D01G085100 chr6D 98.788 165 2 0 314 478 168261867 168261703 1.280000e-75 294.0
15 TraesCS4D01G085100 chr6D 97.826 46 1 0 474 519 57933239 57933194 3.910000e-11 80.5
16 TraesCS4D01G085100 chr6D 97.826 46 1 0 474 519 355455376 355455331 3.910000e-11 80.5
17 TraesCS4D01G085100 chr6D 97.826 46 1 0 474 519 370023715 370023760 3.910000e-11 80.5
18 TraesCS4D01G085100 chr6D 97.826 46 1 0 474 519 425980414 425980369 3.910000e-11 80.5
19 TraesCS4D01G085100 chr6A 98.788 165 2 0 314 478 53807673 53807509 1.280000e-75 294.0
20 TraesCS4D01G085100 chr6A 89.862 217 20 2 9 224 87917493 87917278 1.290000e-70 278.0
21 TraesCS4D01G085100 chr6A 86.383 235 25 4 683 916 268841543 268841315 2.810000e-62 250.0
22 TraesCS4D01G085100 chr5D 98.788 165 2 0 314 478 446178495 446178331 1.280000e-75 294.0
23 TraesCS4D01G085100 chr1A 98.788 165 2 0 314 478 278532784 278532948 1.280000e-75 294.0
24 TraesCS4D01G085100 chr1A 98.788 165 2 0 314 478 554443918 554444082 1.280000e-75 294.0
25 TraesCS4D01G085100 chr1A 97.661 171 3 1 314 484 554516449 554516280 4.610000e-75 292.0
26 TraesCS4D01G085100 chr1A 91.667 60 5 0 518 577 558377570 558377629 3.020000e-12 84.2
27 TraesCS4D01G085100 chr1A 91.379 58 5 0 518 575 514889007 514889064 3.910000e-11 80.5
28 TraesCS4D01G085100 chr1A 91.379 58 5 0 518 575 515145272 515145329 3.910000e-11 80.5
29 TraesCS4D01G085100 chr3A 98.204 167 3 0 314 480 672905815 672905981 4.610000e-75 292.0
30 TraesCS4D01G085100 chr3A 79.839 124 20 3 1336 1457 688676462 688676342 8.400000e-13 86.1
31 TraesCS4D01G085100 chr7B 90.498 221 20 1 1 221 730213158 730213377 1.660000e-74 291.0
32 TraesCS4D01G085100 chr7B 100.000 46 0 0 474 519 2918778 2918733 8.400000e-13 86.1
33 TraesCS4D01G085100 chr7B 100.000 46 0 0 474 519 139609574 139609619 8.400000e-13 86.1
34 TraesCS4D01G085100 chr5A 89.823 226 22 1 1 226 618468282 618468058 5.960000e-74 289.0
35 TraesCS4D01G085100 chr1D 91.469 211 12 1 11 221 208188705 208188909 7.720000e-73 285.0
36 TraesCS4D01G085100 chr1D 93.714 175 11 0 1 175 41913605 41913431 3.620000e-66 263.0
37 TraesCS4D01G085100 chr5B 90.045 221 18 2 1 221 523956754 523956538 2.780000e-72 283.0
38 TraesCS4D01G085100 chr5B 91.667 60 5 0 518 577 402663520 402663579 3.020000e-12 84.2
39 TraesCS4D01G085100 chr7A 92.188 192 15 0 1 192 38730390 38730581 6.010000e-69 272.0
40 TraesCS4D01G085100 chr3D 87.330 221 27 1 1 221 614437118 614436899 7.830000e-63 252.0
41 TraesCS4D01G085100 chr3D 95.000 60 3 0 518 577 23206161 23206102 1.400000e-15 95.3
42 TraesCS4D01G085100 chr2D 87.027 185 21 3 1 183 58743026 58743209 6.180000e-49 206.0
43 TraesCS4D01G085100 chr2D 92.308 91 5 1 827 917 305058105 305058193 1.380000e-25 128.0
44 TraesCS4D01G085100 chr2D 90.164 61 5 1 517 577 85925930 85925989 1.410000e-10 78.7
45 TraesCS4D01G085100 chr7D 93.333 60 4 0 518 577 155627035 155627094 6.490000e-14 89.8
46 TraesCS4D01G085100 chr7D 91.379 58 5 0 518 575 113425797 113425740 3.910000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G085100 chr4D 59621464 59626174 4710 False 8700 8700 100.0000 1 4711 1 chr4D.!!$F1 4710
1 TraesCS4D01G085100 chr4A 536790955 536796033 5078 True 2059 5668 92.9310 560 4699 3 chr4A.!!$R1 4139
2 TraesCS4D01G085100 chr4B 89000554 89006088 5534 False 3067 5068 92.8035 578 4706 2 chr4B.!!$F2 4128

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 57 0.108804 CGCGCTGAAGAAACCCTAGA 60.109 55.000 5.56 0.00 0.00 2.43 F
958 975 0.109597 GTTCGGTGCCAATGCTTCAG 60.110 55.000 0.00 0.00 38.71 3.02 F
1167 1193 1.070786 GGTCGTTGTTGAGGAGCCA 59.929 57.895 0.00 0.00 35.26 4.75 F
2715 2746 1.132640 GTGTCTTGCGCCATTCGAC 59.867 57.895 4.18 4.83 41.67 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1788 1816 2.027192 GTCCACTCCATAAGCAAGGTCA 60.027 50.000 0.00 0.0 0.00 4.02 R
2261 2290 2.223745 CATCATTGACATCGCCATCCA 58.776 47.619 0.00 0.0 0.00 3.41 R
3069 3100 3.139077 AGTTCAAGTGTCGGAAATGGAC 58.861 45.455 0.00 0.0 34.99 4.02 R
3947 5396 0.038166 TTCCAACAGGCTGACCATCC 59.962 55.000 23.66 0.0 39.06 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.426568 GCCGCTGCCTGAAGACAC 61.427 66.667 0.00 0.00 0.00 3.67
18 19 2.743928 CCGCTGCCTGAAGACACC 60.744 66.667 0.00 0.00 0.00 4.16
19 20 3.114616 CGCTGCCTGAAGACACCG 61.115 66.667 0.00 0.00 0.00 4.94
20 21 3.426568 GCTGCCTGAAGACACCGC 61.427 66.667 0.00 0.00 0.00 5.68
21 22 2.743928 CTGCCTGAAGACACCGCC 60.744 66.667 0.00 0.00 0.00 6.13
22 23 4.329545 TGCCTGAAGACACCGCCC 62.330 66.667 0.00 0.00 0.00 6.13
24 25 4.760047 CCTGAAGACACCGCCCGG 62.760 72.222 4.96 4.96 42.03 5.73
25 26 3.691342 CTGAAGACACCGCCCGGA 61.691 66.667 14.44 0.00 38.96 5.14
26 27 3.649277 CTGAAGACACCGCCCGGAG 62.649 68.421 14.44 8.24 38.96 4.63
48 49 4.735132 CCGTCCCGCGCTGAAGAA 62.735 66.667 5.56 0.00 39.71 2.52
49 50 2.736995 CGTCCCGCGCTGAAGAAA 60.737 61.111 5.56 0.00 0.00 2.52
50 51 2.861006 GTCCCGCGCTGAAGAAAC 59.139 61.111 5.56 0.00 0.00 2.78
51 52 2.358247 TCCCGCGCTGAAGAAACC 60.358 61.111 5.56 0.00 0.00 3.27
52 53 3.431725 CCCGCGCTGAAGAAACCC 61.432 66.667 5.56 0.00 0.00 4.11
53 54 2.358737 CCGCGCTGAAGAAACCCT 60.359 61.111 5.56 0.00 0.00 4.34
54 55 1.079405 CCGCGCTGAAGAAACCCTA 60.079 57.895 5.56 0.00 0.00 3.53
55 56 1.084370 CCGCGCTGAAGAAACCCTAG 61.084 60.000 5.56 0.00 0.00 3.02
56 57 0.108804 CGCGCTGAAGAAACCCTAGA 60.109 55.000 5.56 0.00 0.00 2.43
57 58 1.471676 CGCGCTGAAGAAACCCTAGAT 60.472 52.381 5.56 0.00 0.00 1.98
58 59 1.936547 GCGCTGAAGAAACCCTAGATG 59.063 52.381 0.00 0.00 0.00 2.90
59 60 2.555199 CGCTGAAGAAACCCTAGATGG 58.445 52.381 0.00 0.00 0.00 3.51
68 69 3.581372 CCTAGATGGGGAAGGGCC 58.419 66.667 0.00 0.00 0.00 5.80
69 70 2.520536 CCTAGATGGGGAAGGGCCG 61.521 68.421 0.00 0.00 37.63 6.13
70 71 2.447765 TAGATGGGGAAGGGCCGG 60.448 66.667 0.00 0.00 37.63 6.13
149 150 2.612251 GGGGGAGGAGGAGAGAGG 59.388 72.222 0.00 0.00 0.00 3.69
150 151 2.612251 GGGGAGGAGGAGAGAGGG 59.388 72.222 0.00 0.00 0.00 4.30
151 152 2.015726 GGGGAGGAGGAGAGAGGGA 61.016 68.421 0.00 0.00 0.00 4.20
152 153 1.541672 GGGAGGAGGAGAGAGGGAG 59.458 68.421 0.00 0.00 0.00 4.30
153 154 0.996762 GGGAGGAGGAGAGAGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
154 155 0.478507 GGAGGAGGAGAGAGGGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
155 156 0.478507 GAGGAGGAGAGAGGGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
156 157 0.998945 AGGAGGAGAGAGGGAGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
157 158 1.152546 GAGGAGAGAGGGAGAGGGC 60.153 68.421 0.00 0.00 0.00 5.19
158 159 1.625565 AGGAGAGAGGGAGAGGGCT 60.626 63.158 0.00 0.00 0.00 5.19
159 160 1.152546 GGAGAGAGGGAGAGGGCTC 60.153 68.421 0.00 0.00 40.54 4.70
160 161 1.528309 GAGAGAGGGAGAGGGCTCG 60.528 68.421 0.00 0.00 42.25 5.03
225 226 2.511829 TCGCGGACGAGAGAGAGG 60.512 66.667 6.13 0.00 45.12 3.69
226 227 2.511829 CGCGGACGAGAGAGAGGA 60.512 66.667 0.00 0.00 43.93 3.71
227 228 2.815298 CGCGGACGAGAGAGAGGAC 61.815 68.421 0.00 0.00 43.93 3.85
228 229 1.450669 GCGGACGAGAGAGAGGACT 60.451 63.158 0.00 0.00 0.00 3.85
229 230 0.179078 GCGGACGAGAGAGAGGACTA 60.179 60.000 0.00 0.00 0.00 2.59
230 231 1.541670 GCGGACGAGAGAGAGGACTAT 60.542 57.143 0.00 0.00 0.00 2.12
231 232 2.409975 CGGACGAGAGAGAGGACTATC 58.590 57.143 0.00 0.00 34.93 2.08
232 233 2.036733 CGGACGAGAGAGAGGACTATCT 59.963 54.545 0.00 0.00 45.72 1.98
233 234 3.493699 CGGACGAGAGAGAGGACTATCTT 60.494 52.174 0.00 0.00 43.53 2.40
234 235 3.813166 GGACGAGAGAGAGGACTATCTTG 59.187 52.174 0.00 0.00 43.53 3.02
235 236 3.813166 GACGAGAGAGAGGACTATCTTGG 59.187 52.174 11.91 4.20 45.18 3.61
236 237 3.456644 ACGAGAGAGAGGACTATCTTGGA 59.543 47.826 11.91 0.00 45.18 3.53
237 238 3.813166 CGAGAGAGAGGACTATCTTGGAC 59.187 52.174 0.00 0.00 43.53 4.02
238 239 4.684757 CGAGAGAGAGGACTATCTTGGACA 60.685 50.000 0.00 0.00 43.53 4.02
239 240 5.197451 GAGAGAGAGGACTATCTTGGACAA 58.803 45.833 0.00 0.00 43.53 3.18
240 241 5.776358 AGAGAGAGGACTATCTTGGACAAT 58.224 41.667 0.00 0.00 41.18 2.71
241 242 5.598005 AGAGAGAGGACTATCTTGGACAATG 59.402 44.000 0.00 0.00 41.18 2.82
242 243 4.100808 AGAGAGGACTATCTTGGACAATGC 59.899 45.833 0.00 0.00 0.00 3.56
243 244 4.036518 AGAGGACTATCTTGGACAATGCT 58.963 43.478 0.00 0.00 0.00 3.79
244 245 4.472833 AGAGGACTATCTTGGACAATGCTT 59.527 41.667 0.00 0.00 0.00 3.91
245 246 4.775236 AGGACTATCTTGGACAATGCTTC 58.225 43.478 0.00 0.00 0.00 3.86
246 247 4.472833 AGGACTATCTTGGACAATGCTTCT 59.527 41.667 0.00 0.00 0.00 2.85
247 248 4.813697 GGACTATCTTGGACAATGCTTCTC 59.186 45.833 0.00 0.00 0.00 2.87
248 249 5.396213 GGACTATCTTGGACAATGCTTCTCT 60.396 44.000 0.00 0.00 0.00 3.10
249 250 5.669477 ACTATCTTGGACAATGCTTCTCTC 58.331 41.667 0.00 0.00 0.00 3.20
250 251 3.340814 TCTTGGACAATGCTTCTCTCC 57.659 47.619 0.00 0.00 0.00 3.71
251 252 2.909006 TCTTGGACAATGCTTCTCTCCT 59.091 45.455 0.00 0.00 0.00 3.69
252 253 3.328931 TCTTGGACAATGCTTCTCTCCTT 59.671 43.478 0.00 0.00 0.00 3.36
253 254 3.063510 TGGACAATGCTTCTCTCCTTG 57.936 47.619 0.00 0.00 0.00 3.61
254 255 2.639347 TGGACAATGCTTCTCTCCTTGA 59.361 45.455 0.00 0.00 0.00 3.02
255 256 3.072915 TGGACAATGCTTCTCTCCTTGAA 59.927 43.478 0.00 0.00 0.00 2.69
256 257 4.074970 GGACAATGCTTCTCTCCTTGAAA 58.925 43.478 0.00 0.00 0.00 2.69
257 258 4.704057 GGACAATGCTTCTCTCCTTGAAAT 59.296 41.667 0.00 0.00 0.00 2.17
258 259 5.392811 GGACAATGCTTCTCTCCTTGAAATG 60.393 44.000 0.00 0.00 0.00 2.32
259 260 5.075493 ACAATGCTTCTCTCCTTGAAATGT 58.925 37.500 0.00 0.00 0.00 2.71
260 261 6.240894 ACAATGCTTCTCTCCTTGAAATGTA 58.759 36.000 0.00 0.00 0.00 2.29
261 262 6.888632 ACAATGCTTCTCTCCTTGAAATGTAT 59.111 34.615 0.00 0.00 0.00 2.29
262 263 6.939132 ATGCTTCTCTCCTTGAAATGTATG 57.061 37.500 0.00 0.00 0.00 2.39
263 264 5.809001 TGCTTCTCTCCTTGAAATGTATGT 58.191 37.500 0.00 0.00 0.00 2.29
264 265 6.946340 TGCTTCTCTCCTTGAAATGTATGTA 58.054 36.000 0.00 0.00 0.00 2.29
265 266 7.568349 TGCTTCTCTCCTTGAAATGTATGTAT 58.432 34.615 0.00 0.00 0.00 2.29
266 267 7.496920 TGCTTCTCTCCTTGAAATGTATGTATG 59.503 37.037 0.00 0.00 0.00 2.39
267 268 7.497249 GCTTCTCTCCTTGAAATGTATGTATGT 59.503 37.037 0.00 0.00 0.00 2.29
268 269 9.388506 CTTCTCTCCTTGAAATGTATGTATGTT 57.611 33.333 0.00 0.00 0.00 2.71
269 270 8.948631 TCTCTCCTTGAAATGTATGTATGTTC 57.051 34.615 0.00 0.00 0.00 3.18
270 271 8.762645 TCTCTCCTTGAAATGTATGTATGTTCT 58.237 33.333 0.00 0.00 0.00 3.01
271 272 8.722480 TCTCCTTGAAATGTATGTATGTTCTG 57.278 34.615 0.00 0.00 0.00 3.02
272 273 8.539544 TCTCCTTGAAATGTATGTATGTTCTGA 58.460 33.333 0.00 0.00 0.00 3.27
273 274 9.166173 CTCCTTGAAATGTATGTATGTTCTGAA 57.834 33.333 0.00 0.00 0.00 3.02
274 275 9.513906 TCCTTGAAATGTATGTATGTTCTGAAA 57.486 29.630 0.00 0.00 0.00 2.69
275 276 9.559958 CCTTGAAATGTATGTATGTTCTGAAAC 57.440 33.333 0.00 0.00 35.85 2.78
289 290 7.490962 TGTTCTGAAACAACTCGTCATTATT 57.509 32.000 0.00 0.00 42.34 1.40
290 291 8.596271 TGTTCTGAAACAACTCGTCATTATTA 57.404 30.769 0.00 0.00 42.34 0.98
291 292 9.047371 TGTTCTGAAACAACTCGTCATTATTAA 57.953 29.630 0.00 0.00 42.34 1.40
294 295 9.214957 TCTGAAACAACTCGTCATTATTAATGT 57.785 29.630 14.48 0.00 39.87 2.71
332 333 8.214364 ACTCCCATATTTCTTAGTTCAAGATCC 58.786 37.037 0.00 0.00 42.88 3.36
333 334 7.518188 TCCCATATTTCTTAGTTCAAGATCCC 58.482 38.462 0.00 0.00 42.88 3.85
334 335 7.350921 TCCCATATTTCTTAGTTCAAGATCCCT 59.649 37.037 0.00 0.00 42.88 4.20
335 336 7.663493 CCCATATTTCTTAGTTCAAGATCCCTC 59.337 40.741 0.00 0.00 42.88 4.30
336 337 8.435982 CCATATTTCTTAGTTCAAGATCCCTCT 58.564 37.037 0.00 0.00 42.88 3.69
337 338 9.844257 CATATTTCTTAGTTCAAGATCCCTCTT 57.156 33.333 0.00 0.00 42.88 2.85
340 341 8.437274 TTTCTTAGTTCAAGATCCCTCTTACT 57.563 34.615 0.00 0.00 42.88 2.24
341 342 9.543231 TTTCTTAGTTCAAGATCCCTCTTACTA 57.457 33.333 0.00 0.00 42.88 1.82
342 343 9.543231 TTCTTAGTTCAAGATCCCTCTTACTAA 57.457 33.333 9.00 9.00 42.88 2.24
343 344 8.968969 TCTTAGTTCAAGATCCCTCTTACTAAC 58.031 37.037 6.63 4.26 39.78 2.34
344 345 8.896722 TTAGTTCAAGATCCCTCTTACTAACT 57.103 34.615 6.63 9.19 39.78 2.24
345 346 7.176589 AGTTCAAGATCCCTCTTACTAACTG 57.823 40.000 0.00 0.00 39.78 3.16
346 347 6.155393 AGTTCAAGATCCCTCTTACTAACTGG 59.845 42.308 0.00 0.00 39.78 4.00
347 348 5.838955 TCAAGATCCCTCTTACTAACTGGA 58.161 41.667 0.00 0.00 39.78 3.86
348 349 6.261435 TCAAGATCCCTCTTACTAACTGGAA 58.739 40.000 0.00 0.00 39.78 3.53
349 350 6.903534 TCAAGATCCCTCTTACTAACTGGAAT 59.096 38.462 0.00 0.00 39.78 3.01
350 351 8.065627 TCAAGATCCCTCTTACTAACTGGAATA 58.934 37.037 0.00 0.00 39.78 1.75
351 352 8.705594 CAAGATCCCTCTTACTAACTGGAATAA 58.294 37.037 0.00 0.00 39.78 1.40
352 353 8.855804 AGATCCCTCTTACTAACTGGAATAAA 57.144 34.615 0.00 0.00 0.00 1.40
353 354 9.280456 AGATCCCTCTTACTAACTGGAATAAAA 57.720 33.333 0.00 0.00 0.00 1.52
354 355 9.549078 GATCCCTCTTACTAACTGGAATAAAAG 57.451 37.037 0.00 0.00 0.00 2.27
355 356 8.674925 TCCCTCTTACTAACTGGAATAAAAGA 57.325 34.615 0.00 0.00 0.00 2.52
356 357 9.108111 TCCCTCTTACTAACTGGAATAAAAGAA 57.892 33.333 0.00 0.00 0.00 2.52
357 358 9.907229 CCCTCTTACTAACTGGAATAAAAGAAT 57.093 33.333 0.00 0.00 0.00 2.40
375 376 8.705048 AAAAGAATTAGTAGATCTGTTCCGTC 57.295 34.615 5.18 0.00 0.00 4.79
376 377 6.394025 AGAATTAGTAGATCTGTTCCGTCC 57.606 41.667 5.18 0.00 0.00 4.79
377 378 5.892119 AGAATTAGTAGATCTGTTCCGTCCA 59.108 40.000 5.18 0.00 0.00 4.02
378 379 6.380274 AGAATTAGTAGATCTGTTCCGTCCAA 59.620 38.462 5.18 0.00 0.00 3.53
379 380 5.988310 TTAGTAGATCTGTTCCGTCCAAA 57.012 39.130 5.18 0.00 0.00 3.28
380 381 4.884668 AGTAGATCTGTTCCGTCCAAAA 57.115 40.909 5.18 0.00 0.00 2.44
381 382 5.422214 AGTAGATCTGTTCCGTCCAAAAT 57.578 39.130 5.18 0.00 0.00 1.82
382 383 5.178797 AGTAGATCTGTTCCGTCCAAAATG 58.821 41.667 5.18 0.00 0.00 2.32
383 384 3.347216 AGATCTGTTCCGTCCAAAATGG 58.653 45.455 0.00 0.00 39.43 3.16
384 385 1.904287 TCTGTTCCGTCCAAAATGGG 58.096 50.000 0.00 0.00 38.32 4.00
385 386 1.422024 TCTGTTCCGTCCAAAATGGGA 59.578 47.619 0.00 0.00 38.32 4.37
386 387 2.158593 TCTGTTCCGTCCAAAATGGGAA 60.159 45.455 0.00 0.00 39.05 3.97
387 388 2.825532 CTGTTCCGTCCAAAATGGGAAT 59.174 45.455 0.00 0.00 40.40 3.01
388 389 2.560542 TGTTCCGTCCAAAATGGGAATG 59.439 45.455 0.00 0.00 40.40 2.67
389 390 1.846007 TCCGTCCAAAATGGGAATGG 58.154 50.000 0.00 0.00 39.05 3.16
390 391 0.823460 CCGTCCAAAATGGGAATGGG 59.177 55.000 0.00 0.00 39.05 4.00
391 392 0.175531 CGTCCAAAATGGGAATGGGC 59.824 55.000 0.00 0.00 39.05 5.36
392 393 0.175531 GTCCAAAATGGGAATGGGCG 59.824 55.000 0.00 0.00 39.05 6.13
393 394 1.153389 CCAAAATGGGAATGGGCGC 60.153 57.895 0.00 0.00 32.67 6.53
394 395 1.616091 CCAAAATGGGAATGGGCGCT 61.616 55.000 7.64 0.00 32.67 5.92
395 396 1.110442 CAAAATGGGAATGGGCGCTA 58.890 50.000 7.64 0.00 0.00 4.26
396 397 1.067516 CAAAATGGGAATGGGCGCTAG 59.932 52.381 7.64 0.00 0.00 3.42
397 398 0.468029 AAATGGGAATGGGCGCTAGG 60.468 55.000 7.64 0.00 0.00 3.02
398 399 2.357593 AATGGGAATGGGCGCTAGGG 62.358 60.000 7.64 1.65 0.00 3.53
399 400 3.489513 GGGAATGGGCGCTAGGGT 61.490 66.667 7.64 0.00 0.00 4.34
400 401 2.595655 GGAATGGGCGCTAGGGTT 59.404 61.111 7.64 0.00 0.00 4.11
401 402 1.702022 GGGAATGGGCGCTAGGGTTA 61.702 60.000 7.64 0.00 0.00 2.85
402 403 0.400594 GGAATGGGCGCTAGGGTTAT 59.599 55.000 7.64 0.00 0.00 1.89
403 404 1.523758 GAATGGGCGCTAGGGTTATG 58.476 55.000 7.64 0.00 0.00 1.90
404 405 1.071699 GAATGGGCGCTAGGGTTATGA 59.928 52.381 7.64 0.00 0.00 2.15
405 406 1.136828 ATGGGCGCTAGGGTTATGAA 58.863 50.000 7.64 0.00 0.00 2.57
406 407 0.179468 TGGGCGCTAGGGTTATGAAC 59.821 55.000 7.64 0.00 0.00 3.18
407 408 0.468648 GGGCGCTAGGGTTATGAACT 59.531 55.000 7.64 0.00 0.00 3.01
408 409 1.134189 GGGCGCTAGGGTTATGAACTT 60.134 52.381 7.64 0.00 0.00 2.66
409 410 2.103601 GGGCGCTAGGGTTATGAACTTA 59.896 50.000 7.64 0.00 0.00 2.24
410 411 3.244457 GGGCGCTAGGGTTATGAACTTAT 60.244 47.826 7.64 0.00 0.00 1.73
411 412 4.020839 GGGCGCTAGGGTTATGAACTTATA 60.021 45.833 7.64 0.00 0.00 0.98
412 413 5.511888 GGGCGCTAGGGTTATGAACTTATAA 60.512 44.000 7.64 0.00 0.00 0.98
413 414 6.171213 GGCGCTAGGGTTATGAACTTATAAT 58.829 40.000 7.64 0.00 0.00 1.28
414 415 6.313164 GGCGCTAGGGTTATGAACTTATAATC 59.687 42.308 7.64 0.00 0.00 1.75
415 416 6.872020 GCGCTAGGGTTATGAACTTATAATCA 59.128 38.462 8.77 0.00 0.00 2.57
416 417 7.549488 GCGCTAGGGTTATGAACTTATAATCAT 59.451 37.037 8.77 6.76 39.50 2.45
417 418 8.873830 CGCTAGGGTTATGAACTTATAATCATG 58.126 37.037 10.54 0.00 36.93 3.07
418 419 9.944376 GCTAGGGTTATGAACTTATAATCATGA 57.056 33.333 10.54 0.00 36.93 3.07
428 429 8.968242 TGAACTTATAATCATGAAATCGACTCG 58.032 33.333 0.00 0.00 0.00 4.18
429 430 9.181805 GAACTTATAATCATGAAATCGACTCGA 57.818 33.333 3.06 3.06 41.13 4.04
431 432 9.347934 ACTTATAATCATGAAATCGACTCGATC 57.652 33.333 14.25 4.87 46.30 3.69
432 433 9.346725 CTTATAATCATGAAATCGACTCGATCA 57.653 33.333 14.25 10.37 46.30 2.92
433 434 9.860898 TTATAATCATGAAATCGACTCGATCAT 57.139 29.630 14.25 12.12 46.30 2.45
434 435 6.702972 AATCATGAAATCGACTCGATCATC 57.297 37.500 14.25 14.92 46.30 2.92
435 436 5.186996 TCATGAAATCGACTCGATCATCA 57.813 39.130 22.26 22.26 46.30 3.07
436 437 5.218139 TCATGAAATCGACTCGATCATCAG 58.782 41.667 23.37 18.02 46.30 2.90
437 438 4.900635 TGAAATCGACTCGATCATCAGA 57.099 40.909 14.25 0.14 46.30 3.27
438 439 5.444663 TGAAATCGACTCGATCATCAGAT 57.555 39.130 14.25 0.00 46.30 2.90
439 440 5.836347 TGAAATCGACTCGATCATCAGATT 58.164 37.500 14.25 3.47 46.30 2.40
440 441 6.970484 TGAAATCGACTCGATCATCAGATTA 58.030 36.000 14.25 0.00 46.30 1.75
441 442 7.597386 TGAAATCGACTCGATCATCAGATTAT 58.403 34.615 14.25 0.00 46.30 1.28
442 443 8.730680 TGAAATCGACTCGATCATCAGATTATA 58.269 33.333 14.25 0.00 46.30 0.98
443 444 9.561270 GAAATCGACTCGATCATCAGATTATAA 57.439 33.333 14.25 0.00 46.30 0.98
444 445 9.566530 AAATCGACTCGATCATCAGATTATAAG 57.433 33.333 14.25 0.00 46.30 1.73
445 446 7.674471 TCGACTCGATCATCAGATTATAAGT 57.326 36.000 0.00 0.00 33.72 2.24
446 447 8.100508 TCGACTCGATCATCAGATTATAAGTT 57.899 34.615 0.00 0.00 33.72 2.66
447 448 8.231161 TCGACTCGATCATCAGATTATAAGTTC 58.769 37.037 0.00 0.00 33.72 3.01
448 449 8.017946 CGACTCGATCATCAGATTATAAGTTCA 58.982 37.037 0.00 0.00 33.72 3.18
449 450 9.853555 GACTCGATCATCAGATTATAAGTTCAT 57.146 33.333 0.00 0.00 33.72 2.57
452 453 9.645059 TCGATCATCAGATTATAAGTTCATTCC 57.355 33.333 0.00 0.00 33.72 3.01
453 454 9.428097 CGATCATCAGATTATAAGTTCATTCCA 57.572 33.333 0.00 0.00 33.72 3.53
458 459 9.658799 ATCAGATTATAAGTTCATTCCATACCG 57.341 33.333 0.00 0.00 0.00 4.02
459 460 8.866093 TCAGATTATAAGTTCATTCCATACCGA 58.134 33.333 0.00 0.00 0.00 4.69
460 461 9.489084 CAGATTATAAGTTCATTCCATACCGAA 57.511 33.333 0.00 0.00 0.00 4.30
461 462 9.490379 AGATTATAAGTTCATTCCATACCGAAC 57.510 33.333 0.00 0.00 38.40 3.95
462 463 8.617290 ATTATAAGTTCATTCCATACCGAACC 57.383 34.615 0.00 0.00 38.80 3.62
463 464 3.992943 AGTTCATTCCATACCGAACCA 57.007 42.857 0.00 0.00 38.80 3.67
464 465 3.873910 AGTTCATTCCATACCGAACCAG 58.126 45.455 0.00 0.00 38.80 4.00
465 466 3.517901 AGTTCATTCCATACCGAACCAGA 59.482 43.478 0.00 0.00 38.80 3.86
466 467 3.536956 TCATTCCATACCGAACCAGAC 57.463 47.619 0.00 0.00 0.00 3.51
467 468 2.169769 TCATTCCATACCGAACCAGACC 59.830 50.000 0.00 0.00 0.00 3.85
468 469 0.533491 TTCCATACCGAACCAGACCG 59.467 55.000 0.00 0.00 0.00 4.79
469 470 0.612732 TCCATACCGAACCAGACCGT 60.613 55.000 0.00 0.00 0.00 4.83
470 471 0.459585 CCATACCGAACCAGACCGTG 60.460 60.000 0.00 0.00 0.00 4.94
471 472 1.082117 CATACCGAACCAGACCGTGC 61.082 60.000 0.00 0.00 0.00 5.34
472 473 1.537814 ATACCGAACCAGACCGTGCA 61.538 55.000 0.00 0.00 0.00 4.57
473 474 2.424705 TACCGAACCAGACCGTGCAC 62.425 60.000 6.82 6.82 0.00 4.57
474 475 2.279851 CGAACCAGACCGTGCACA 60.280 61.111 18.64 0.00 0.00 4.57
475 476 1.667830 CGAACCAGACCGTGCACAT 60.668 57.895 18.64 3.58 0.00 3.21
476 477 1.227999 CGAACCAGACCGTGCACATT 61.228 55.000 18.64 1.56 0.00 2.71
477 478 0.517316 GAACCAGACCGTGCACATTC 59.483 55.000 18.64 12.00 0.00 2.67
478 479 1.227999 AACCAGACCGTGCACATTCG 61.228 55.000 18.64 2.05 0.00 3.34
479 480 1.667830 CCAGACCGTGCACATTCGT 60.668 57.895 18.64 6.61 0.00 3.85
480 481 1.227999 CCAGACCGTGCACATTCGTT 61.228 55.000 18.64 0.00 0.00 3.85
481 482 0.586319 CAGACCGTGCACATTCGTTT 59.414 50.000 18.64 0.00 0.00 3.60
482 483 1.002900 CAGACCGTGCACATTCGTTTT 60.003 47.619 18.64 0.00 0.00 2.43
483 484 1.673920 AGACCGTGCACATTCGTTTTT 59.326 42.857 18.64 0.00 0.00 1.94
484 485 2.041244 GACCGTGCACATTCGTTTTTC 58.959 47.619 18.64 0.00 0.00 2.29
485 486 1.041726 CCGTGCACATTCGTTTTTCG 58.958 50.000 18.64 0.00 41.41 3.46
499 500 5.681880 TCGTTTTTCGATCGCATAAAAAGT 58.318 33.333 19.99 0.00 44.01 2.66
500 501 5.786574 TCGTTTTTCGATCGCATAAAAAGTC 59.213 36.000 19.99 12.02 44.01 3.01
501 502 5.562248 CGTTTTTCGATCGCATAAAAAGTCA 59.438 36.000 19.99 3.44 42.86 3.41
502 503 6.248420 CGTTTTTCGATCGCATAAAAAGTCAT 59.752 34.615 19.99 0.00 42.86 3.06
503 504 7.375781 GTTTTTCGATCGCATAAAAAGTCATG 58.624 34.615 19.99 0.00 33.93 3.07
504 505 6.415798 TTTCGATCGCATAAAAAGTCATGA 57.584 33.333 11.09 0.00 0.00 3.07
505 506 5.641777 TCGATCGCATAAAAAGTCATGAG 57.358 39.130 11.09 0.00 0.00 2.90
506 507 5.348164 TCGATCGCATAAAAAGTCATGAGA 58.652 37.500 11.09 0.00 35.80 3.27
507 508 5.985530 TCGATCGCATAAAAAGTCATGAGAT 59.014 36.000 11.09 1.24 42.17 2.75
508 509 6.144563 TCGATCGCATAAAAAGTCATGAGATC 59.855 38.462 11.09 14.48 46.42 2.75
510 511 6.983474 TCGCATAAAAAGTCATGAGATCAA 57.017 33.333 0.00 0.00 0.00 2.57
511 512 7.376435 TCGCATAAAAAGTCATGAGATCAAA 57.624 32.000 0.00 0.00 0.00 2.69
512 513 7.815641 TCGCATAAAAAGTCATGAGATCAAAA 58.184 30.769 0.00 0.00 0.00 2.44
513 514 8.296000 TCGCATAAAAAGTCATGAGATCAAAAA 58.704 29.630 0.00 0.00 0.00 1.94
533 534 6.389622 AAAAAGAAAGAGCGTTTTTGACAC 57.610 33.333 0.00 0.00 33.26 3.67
534 535 4.965119 AAGAAAGAGCGTTTTTGACACT 57.035 36.364 0.00 0.00 0.00 3.55
535 536 6.431198 AAAGAAAGAGCGTTTTTGACACTA 57.569 33.333 0.00 0.00 0.00 2.74
536 537 6.431198 AAGAAAGAGCGTTTTTGACACTAA 57.569 33.333 0.00 0.00 0.00 2.24
537 538 6.619801 AGAAAGAGCGTTTTTGACACTAAT 57.380 33.333 0.00 0.00 0.00 1.73
538 539 6.430451 AGAAAGAGCGTTTTTGACACTAATG 58.570 36.000 0.00 0.00 0.00 1.90
539 540 5.751243 AAGAGCGTTTTTGACACTAATGT 57.249 34.783 0.00 0.00 43.71 2.71
540 541 6.854496 AAGAGCGTTTTTGACACTAATGTA 57.146 33.333 0.00 0.00 39.95 2.29
541 542 6.467723 AGAGCGTTTTTGACACTAATGTAG 57.532 37.500 0.00 0.00 39.95 2.74
542 543 6.220930 AGAGCGTTTTTGACACTAATGTAGA 58.779 36.000 0.00 0.00 39.95 2.59
543 544 6.704493 AGAGCGTTTTTGACACTAATGTAGAA 59.296 34.615 0.00 0.00 39.95 2.10
544 545 7.387948 AGAGCGTTTTTGACACTAATGTAGAAT 59.612 33.333 0.00 0.00 39.95 2.40
545 546 8.542497 AGCGTTTTTGACACTAATGTAGAATA 57.458 30.769 0.00 0.00 39.95 1.75
546 547 8.995220 AGCGTTTTTGACACTAATGTAGAATAA 58.005 29.630 0.00 0.00 39.95 1.40
547 548 9.601971 GCGTTTTTGACACTAATGTAGAATAAA 57.398 29.630 0.00 0.00 39.95 1.40
643 644 3.505386 ACCCTGATTAACAAATGTGCCA 58.495 40.909 0.00 0.00 0.00 4.92
772 773 2.769387 CGCACTCGTAGAAACACATG 57.231 50.000 0.00 0.00 34.09 3.21
774 775 2.729360 CGCACTCGTAGAAACACATGAA 59.271 45.455 0.00 0.00 34.09 2.57
775 776 3.421826 CGCACTCGTAGAAACACATGAAC 60.422 47.826 0.00 0.00 34.09 3.18
776 777 3.741344 GCACTCGTAGAAACACATGAACT 59.259 43.478 0.00 0.00 34.09 3.01
777 778 4.211374 GCACTCGTAGAAACACATGAACTT 59.789 41.667 0.00 0.00 34.09 2.66
778 779 5.404366 GCACTCGTAGAAACACATGAACTTA 59.596 40.000 0.00 0.00 34.09 2.24
779 780 6.073980 GCACTCGTAGAAACACATGAACTTAA 60.074 38.462 0.00 0.00 34.09 1.85
933 950 5.723887 AGTTCCACTCATCTGGTAAGATTCT 59.276 40.000 0.00 0.00 41.43 2.40
958 975 0.109597 GTTCGGTGCCAATGCTTCAG 60.110 55.000 0.00 0.00 38.71 3.02
960 977 2.338015 CGGTGCCAATGCTTCAGCT 61.338 57.895 0.00 0.00 42.66 4.24
976 1002 6.381420 TGCTTCAGCTTACTAGAACCTAATCT 59.619 38.462 0.00 0.00 42.66 2.40
987 1013 4.899502 AGAACCTAATCTGGTGAGTTGTG 58.100 43.478 0.00 0.00 40.73 3.33
1044 1070 3.682292 ATCCGGCGGTGAGAAAGGC 62.682 63.158 27.32 0.00 0.00 4.35
1077 1103 1.670811 GCCATTGATGTAGTTCCCGTG 59.329 52.381 0.00 0.00 0.00 4.94
1167 1193 1.070786 GGTCGTTGTTGAGGAGCCA 59.929 57.895 0.00 0.00 35.26 4.75
1200 1226 2.925170 ACGAGGGTGGCAGCTCTT 60.925 61.111 17.16 2.61 0.00 2.85
1277 1303 8.076910 TGCACATATGATTACTTTTTCCCAAT 57.923 30.769 10.38 0.00 0.00 3.16
1279 1305 7.379529 GCACATATGATTACTTTTTCCCAATCG 59.620 37.037 10.38 0.00 31.43 3.34
1530 1557 4.956085 ACTCTTGCAAATTTGGTAAACCC 58.044 39.130 19.47 1.87 34.29 4.11
1747 1775 4.487948 CACCCATGTTGCTTAATTGACAG 58.512 43.478 0.00 0.00 0.00 3.51
1751 1779 6.437162 ACCCATGTTGCTTAATTGACAGTATT 59.563 34.615 0.00 0.00 0.00 1.89
1788 1816 1.240256 GATACTCTCACGCTCCGGAT 58.760 55.000 3.57 0.00 0.00 4.18
1894 1922 4.093408 ACTTGTCGTTCATTTCATCATCCG 59.907 41.667 0.00 0.00 0.00 4.18
2193 2222 2.433436 GACAGGTTAGGCGGTTTCATT 58.567 47.619 0.00 0.00 0.00 2.57
2202 2231 1.268845 GGCGGTTTCATTGTGTTCGTT 60.269 47.619 0.00 0.00 0.00 3.85
2261 2290 5.824624 CAGATTGGAGCTATGTGTACCATTT 59.175 40.000 0.00 0.00 34.86 2.32
2502 2531 5.221204 CCGGACTAAGGTAGAACTGTAATCC 60.221 48.000 0.00 0.00 0.00 3.01
2564 2595 6.709018 AGCTGCAAAAGTTTTCCTTACTAA 57.291 33.333 1.02 0.00 31.48 2.24
2568 2599 8.132995 GCTGCAAAAGTTTTCCTTACTAACTAA 58.867 33.333 0.00 0.00 32.17 2.24
2715 2746 1.132640 GTGTCTTGCGCCATTCGAC 59.867 57.895 4.18 4.83 41.67 4.20
2842 2873 6.569228 TGTTTCAGTTCAATATCGTCGATC 57.431 37.500 11.82 0.00 0.00 3.69
2952 2983 8.673711 TGGTTATGATAAAAGCAACTATGACAC 58.326 33.333 0.00 0.00 31.82 3.67
3069 3100 3.632145 ACAAAAGGTGCTTGTCCTAACAG 59.368 43.478 0.00 0.00 36.57 3.16
3503 3534 2.938838 TGGGTGAAGGTTAACTTGGTG 58.061 47.619 5.42 0.00 40.21 4.17
3556 3587 8.708742 GGGCTTAATTTGTTTGTCTTGTTATTC 58.291 33.333 0.00 0.00 0.00 1.75
3596 3627 4.180057 TCCAAAAGCATGTGTTTGTCAAC 58.820 39.130 16.88 0.00 0.00 3.18
3632 3663 0.543749 GGCTGGGAACTCTGCTGTAT 59.456 55.000 3.82 0.00 33.09 2.29
3743 3774 6.368243 GGATGATAGCTGTGTACAATGATCTG 59.632 42.308 0.00 0.00 0.00 2.90
3746 3777 7.781056 TGATAGCTGTGTACAATGATCTGTTA 58.219 34.615 0.00 0.00 0.00 2.41
3905 5354 3.759618 AGTTCAGAACTTCGAGACTAGGG 59.240 47.826 10.27 0.00 39.04 3.53
3907 5356 4.237976 TCAGAACTTCGAGACTAGGGAT 57.762 45.455 0.00 0.00 0.00 3.85
3908 5357 5.369409 TCAGAACTTCGAGACTAGGGATA 57.631 43.478 0.00 0.00 0.00 2.59
3909 5358 5.124645 TCAGAACTTCGAGACTAGGGATAC 58.875 45.833 0.00 0.00 0.00 2.24
3910 5359 5.104444 TCAGAACTTCGAGACTAGGGATACT 60.104 44.000 0.00 0.00 0.00 2.12
3911 5360 5.237779 CAGAACTTCGAGACTAGGGATACTC 59.762 48.000 0.00 0.00 0.00 2.59
3912 5361 4.089408 ACTTCGAGACTAGGGATACTCC 57.911 50.000 0.00 0.00 35.23 3.85
3913 5362 3.717913 ACTTCGAGACTAGGGATACTCCT 59.282 47.826 0.00 0.00 40.79 3.69
3914 5363 4.906664 ACTTCGAGACTAGGGATACTCCTA 59.093 45.833 0.00 0.00 38.30 2.94
3915 5364 5.548836 ACTTCGAGACTAGGGATACTCCTAT 59.451 44.000 0.00 0.00 38.58 2.57
3931 5380 5.365619 ACTCCTATTATAACAAAGCACCCG 58.634 41.667 0.00 0.00 0.00 5.28
3938 5387 1.033202 AACAAAGCACCCGAACCGTT 61.033 50.000 0.00 0.00 0.00 4.44
3947 5396 0.450184 CCCGAACCGTTTAATGGCAG 59.550 55.000 2.65 0.00 0.00 4.85
3996 5445 4.431416 TGACCGATGGCATTAGGTAAAT 57.569 40.909 22.79 6.15 37.07 1.40
3998 5447 5.547465 TGACCGATGGCATTAGGTAAATAG 58.453 41.667 22.79 1.97 37.07 1.73
4276 5732 4.099824 CGTCTACGCACAATGTACACATA 58.900 43.478 0.00 0.00 35.10 2.29
4295 5751 7.205297 ACACATATGCATTTTTGCTCTTATCC 58.795 34.615 3.54 0.00 35.49 2.59
4391 5854 1.604438 GGTTTTTACTGCCCGCTTTGG 60.604 52.381 0.00 0.00 37.55 3.28
4423 5886 0.179189 CAAACGAGAAGGCGGCAATC 60.179 55.000 13.08 9.35 35.12 2.67
4424 5887 0.321653 AAACGAGAAGGCGGCAATCT 60.322 50.000 13.08 14.57 35.12 2.40
4425 5888 0.741221 AACGAGAAGGCGGCAATCTC 60.741 55.000 25.38 25.38 36.96 2.75
4426 5889 1.142748 CGAGAAGGCGGCAATCTCT 59.857 57.895 29.14 18.30 37.93 3.10
4427 5890 1.150567 CGAGAAGGCGGCAATCTCTG 61.151 60.000 29.14 22.13 37.93 3.35
4604 7063 1.001393 CCAATGTTGCCCGGTACCT 60.001 57.895 10.90 0.00 0.00 3.08
4679 7138 9.813080 GTTGTTTTGTGCTATTTCTCTAGTAAG 57.187 33.333 0.00 0.00 0.00 2.34
4699 7158 3.143728 AGTTGGGCCTTTTGTAACGTAG 58.856 45.455 4.53 0.00 0.00 3.51
4701 7160 1.698532 TGGGCCTTTTGTAACGTAGGA 59.301 47.619 4.53 0.00 0.00 2.94
4702 7161 2.306512 TGGGCCTTTTGTAACGTAGGAT 59.693 45.455 4.53 0.00 0.00 3.24
4703 7162 3.518705 TGGGCCTTTTGTAACGTAGGATA 59.481 43.478 4.53 0.00 0.00 2.59
4704 7163 4.124970 GGGCCTTTTGTAACGTAGGATAG 58.875 47.826 0.84 0.00 0.00 2.08
4705 7164 4.383444 GGGCCTTTTGTAACGTAGGATAGT 60.383 45.833 0.84 0.00 0.00 2.12
4706 7165 4.569564 GGCCTTTTGTAACGTAGGATAGTG 59.430 45.833 3.94 0.00 0.00 2.74
4707 7166 4.033702 GCCTTTTGTAACGTAGGATAGTGC 59.966 45.833 3.94 0.00 0.00 4.40
4708 7167 5.172934 CCTTTTGTAACGTAGGATAGTGCA 58.827 41.667 0.00 0.00 0.00 4.57
4709 7168 5.063060 CCTTTTGTAACGTAGGATAGTGCAC 59.937 44.000 9.40 9.40 0.00 4.57
4710 7169 5.395682 TTTGTAACGTAGGATAGTGCACT 57.604 39.130 25.12 25.12 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.426568 GTGTCTTCAGGCAGCGGC 61.427 66.667 0.00 0.00 40.13 6.53
1 2 2.743928 GGTGTCTTCAGGCAGCGG 60.744 66.667 0.00 0.00 0.00 5.52
3 4 3.426568 GCGGTGTCTTCAGGCAGC 61.427 66.667 0.31 0.31 0.00 5.25
4 5 2.743928 GGCGGTGTCTTCAGGCAG 60.744 66.667 0.00 0.00 0.00 4.85
5 6 4.329545 GGGCGGTGTCTTCAGGCA 62.330 66.667 0.00 0.00 0.00 4.75
7 8 4.760047 CCGGGCGGTGTCTTCAGG 62.760 72.222 0.00 0.00 0.00 3.86
8 9 3.649277 CTCCGGGCGGTGTCTTCAG 62.649 68.421 0.00 0.00 36.47 3.02
9 10 3.691342 CTCCGGGCGGTGTCTTCA 61.691 66.667 0.00 0.00 36.47 3.02
33 34 2.677979 GGTTTCTTCAGCGCGGGAC 61.678 63.158 8.83 0.00 0.00 4.46
34 35 2.358247 GGTTTCTTCAGCGCGGGA 60.358 61.111 8.83 3.93 0.00 5.14
35 36 2.515996 TAGGGTTTCTTCAGCGCGGG 62.516 60.000 8.83 1.03 0.00 6.13
36 37 1.079405 TAGGGTTTCTTCAGCGCGG 60.079 57.895 8.83 0.00 0.00 6.46
37 38 0.108804 TCTAGGGTTTCTTCAGCGCG 60.109 55.000 0.00 0.00 0.00 6.86
38 39 1.936547 CATCTAGGGTTTCTTCAGCGC 59.063 52.381 0.00 0.00 0.00 5.92
39 40 2.555199 CCATCTAGGGTTTCTTCAGCG 58.445 52.381 0.00 0.00 0.00 5.18
51 52 2.520536 CGGCCCTTCCCCATCTAGG 61.521 68.421 0.00 0.00 37.03 3.02
52 53 2.520536 CCGGCCCTTCCCCATCTAG 61.521 68.421 0.00 0.00 0.00 2.43
53 54 2.447765 CCGGCCCTTCCCCATCTA 60.448 66.667 0.00 0.00 0.00 1.98
132 133 2.612251 CCTCTCTCCTCCTCCCCC 59.388 72.222 0.00 0.00 0.00 5.40
133 134 2.015726 TCCCTCTCTCCTCCTCCCC 61.016 68.421 0.00 0.00 0.00 4.81
134 135 0.996762 TCTCCCTCTCTCCTCCTCCC 60.997 65.000 0.00 0.00 0.00 4.30
135 136 0.478507 CTCTCCCTCTCTCCTCCTCC 59.521 65.000 0.00 0.00 0.00 4.30
136 137 0.478507 CCTCTCCCTCTCTCCTCCTC 59.521 65.000 0.00 0.00 0.00 3.71
137 138 0.998945 CCCTCTCCCTCTCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
138 139 1.541672 CCCTCTCCCTCTCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
139 140 1.152546 GCCCTCTCCCTCTCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
140 141 1.625565 AGCCCTCTCCCTCTCTCCT 60.626 63.158 0.00 0.00 0.00 3.69
141 142 1.152546 GAGCCCTCTCCCTCTCTCC 60.153 68.421 0.00 0.00 33.19 3.71
142 143 1.528309 CGAGCCCTCTCCCTCTCTC 60.528 68.421 0.00 0.00 35.94 3.20
143 144 2.600731 CGAGCCCTCTCCCTCTCT 59.399 66.667 0.00 0.00 35.94 3.10
144 145 3.223589 GCGAGCCCTCTCCCTCTC 61.224 72.222 0.00 0.00 35.94 3.20
205 206 4.225340 CTCTCTCGTCCGCGACCG 62.225 72.222 8.23 9.68 42.81 4.79
206 207 2.815298 CTCTCTCTCGTCCGCGACC 61.815 68.421 8.23 0.00 42.81 4.79
207 208 2.704616 CTCTCTCTCGTCCGCGAC 59.295 66.667 8.23 2.72 42.81 5.19
208 209 2.511829 CCTCTCTCTCGTCCGCGA 60.512 66.667 8.23 0.00 45.79 5.87
209 210 2.511829 TCCTCTCTCTCGTCCGCG 60.512 66.667 0.00 0.00 39.92 6.46
210 211 0.179078 TAGTCCTCTCTCTCGTCCGC 60.179 60.000 0.00 0.00 0.00 5.54
211 212 2.036733 AGATAGTCCTCTCTCTCGTCCG 59.963 54.545 0.00 0.00 0.00 4.79
212 213 3.764237 AGATAGTCCTCTCTCTCGTCC 57.236 52.381 0.00 0.00 0.00 4.79
213 214 3.813166 CCAAGATAGTCCTCTCTCTCGTC 59.187 52.174 0.00 0.00 0.00 4.20
214 215 3.456644 TCCAAGATAGTCCTCTCTCTCGT 59.543 47.826 0.00 0.00 0.00 4.18
215 216 3.813166 GTCCAAGATAGTCCTCTCTCTCG 59.187 52.174 0.00 0.00 0.00 4.04
216 217 4.787551 TGTCCAAGATAGTCCTCTCTCTC 58.212 47.826 0.00 0.00 0.00 3.20
217 218 4.871871 TGTCCAAGATAGTCCTCTCTCT 57.128 45.455 0.00 0.00 0.00 3.10
218 219 5.738783 GCATTGTCCAAGATAGTCCTCTCTC 60.739 48.000 0.00 0.00 0.00 3.20
219 220 4.100808 GCATTGTCCAAGATAGTCCTCTCT 59.899 45.833 0.00 0.00 0.00 3.10
220 221 4.100808 AGCATTGTCCAAGATAGTCCTCTC 59.899 45.833 0.00 0.00 0.00 3.20
221 222 4.036518 AGCATTGTCCAAGATAGTCCTCT 58.963 43.478 0.00 0.00 0.00 3.69
222 223 4.414337 AGCATTGTCCAAGATAGTCCTC 57.586 45.455 0.00 0.00 0.00 3.71
223 224 4.472833 AGAAGCATTGTCCAAGATAGTCCT 59.527 41.667 0.00 0.00 0.00 3.85
224 225 4.775236 AGAAGCATTGTCCAAGATAGTCC 58.225 43.478 0.00 0.00 0.00 3.85
225 226 5.669477 AGAGAAGCATTGTCCAAGATAGTC 58.331 41.667 0.00 0.00 39.56 2.59
226 227 5.396213 GGAGAGAAGCATTGTCCAAGATAGT 60.396 44.000 0.00 0.00 39.56 2.12
227 228 5.055812 GGAGAGAAGCATTGTCCAAGATAG 58.944 45.833 0.00 0.00 39.56 2.08
228 229 4.718774 AGGAGAGAAGCATTGTCCAAGATA 59.281 41.667 0.00 0.00 39.56 1.98
229 230 3.522750 AGGAGAGAAGCATTGTCCAAGAT 59.477 43.478 0.00 0.00 39.56 2.40
230 231 2.909006 AGGAGAGAAGCATTGTCCAAGA 59.091 45.455 0.00 0.00 39.56 3.02
231 232 3.347077 AGGAGAGAAGCATTGTCCAAG 57.653 47.619 0.00 0.00 39.56 3.61
232 233 3.072915 TCAAGGAGAGAAGCATTGTCCAA 59.927 43.478 0.00 0.00 39.56 3.53
233 234 2.639347 TCAAGGAGAGAAGCATTGTCCA 59.361 45.455 0.00 0.00 39.56 4.02
234 235 3.340814 TCAAGGAGAGAAGCATTGTCC 57.659 47.619 0.00 0.00 39.56 4.02
235 236 5.182760 ACATTTCAAGGAGAGAAGCATTGTC 59.817 40.000 0.00 0.00 38.92 3.18
236 237 5.075493 ACATTTCAAGGAGAGAAGCATTGT 58.925 37.500 0.00 0.00 0.00 2.71
237 238 5.640189 ACATTTCAAGGAGAGAAGCATTG 57.360 39.130 0.00 0.00 0.00 2.82
238 239 6.888632 ACATACATTTCAAGGAGAGAAGCATT 59.111 34.615 0.00 0.00 0.00 3.56
239 240 6.421485 ACATACATTTCAAGGAGAGAAGCAT 58.579 36.000 0.00 0.00 0.00 3.79
240 241 5.809001 ACATACATTTCAAGGAGAGAAGCA 58.191 37.500 0.00 0.00 0.00 3.91
241 242 7.497249 ACATACATACATTTCAAGGAGAGAAGC 59.503 37.037 0.00 0.00 0.00 3.86
242 243 8.954950 ACATACATACATTTCAAGGAGAGAAG 57.045 34.615 0.00 0.00 0.00 2.85
243 244 9.383519 GAACATACATACATTTCAAGGAGAGAA 57.616 33.333 0.00 0.00 0.00 2.87
244 245 8.762645 AGAACATACATACATTTCAAGGAGAGA 58.237 33.333 0.00 0.00 0.00 3.10
245 246 8.824781 CAGAACATACATACATTTCAAGGAGAG 58.175 37.037 0.00 0.00 0.00 3.20
246 247 8.539544 TCAGAACATACATACATTTCAAGGAGA 58.460 33.333 0.00 0.00 0.00 3.71
247 248 8.722480 TCAGAACATACATACATTTCAAGGAG 57.278 34.615 0.00 0.00 0.00 3.69
248 249 9.513906 TTTCAGAACATACATACATTTCAAGGA 57.486 29.630 0.00 0.00 0.00 3.36
249 250 9.559958 GTTTCAGAACATACATACATTTCAAGG 57.440 33.333 0.00 0.00 35.79 3.61
252 253 9.891828 GTTGTTTCAGAACATACATACATTTCA 57.108 29.630 0.00 0.00 44.71 2.69
255 256 8.443160 CGAGTTGTTTCAGAACATACATACATT 58.557 33.333 0.00 0.00 44.71 2.71
256 257 7.602644 ACGAGTTGTTTCAGAACATACATACAT 59.397 33.333 0.00 0.00 44.71 2.29
257 258 6.926826 ACGAGTTGTTTCAGAACATACATACA 59.073 34.615 0.00 0.00 44.71 2.29
258 259 7.115805 TGACGAGTTGTTTCAGAACATACATAC 59.884 37.037 0.00 0.00 44.71 2.39
259 260 7.149307 TGACGAGTTGTTTCAGAACATACATA 58.851 34.615 0.00 0.00 44.71 2.29
260 261 5.989168 TGACGAGTTGTTTCAGAACATACAT 59.011 36.000 0.00 0.00 44.71 2.29
261 262 5.353111 TGACGAGTTGTTTCAGAACATACA 58.647 37.500 0.00 0.00 44.71 2.29
262 263 5.900339 TGACGAGTTGTTTCAGAACATAC 57.100 39.130 0.00 0.00 44.71 2.39
263 264 8.771920 ATAATGACGAGTTGTTTCAGAACATA 57.228 30.769 0.00 0.00 44.71 2.29
264 265 7.672983 ATAATGACGAGTTGTTTCAGAACAT 57.327 32.000 0.00 0.00 44.71 2.71
265 266 7.490962 AATAATGACGAGTTGTTTCAGAACA 57.509 32.000 0.00 0.00 43.73 3.18
268 269 9.214957 ACATTAATAATGACGAGTTGTTTCAGA 57.785 29.630 18.78 0.00 41.46 3.27
318 319 8.973182 AGTTAGTAAGAGGGATCTTGAACTAAG 58.027 37.037 11.12 0.00 34.29 2.18
319 320 8.750298 CAGTTAGTAAGAGGGATCTTGAACTAA 58.250 37.037 8.35 8.35 32.65 2.24
320 321 7.342284 CCAGTTAGTAAGAGGGATCTTGAACTA 59.658 40.741 11.28 5.87 32.42 2.24
321 322 6.155393 CCAGTTAGTAAGAGGGATCTTGAACT 59.845 42.308 0.81 5.28 33.14 3.01
322 323 6.154706 TCCAGTTAGTAAGAGGGATCTTGAAC 59.845 42.308 0.81 3.41 0.00 3.18
323 324 6.261435 TCCAGTTAGTAAGAGGGATCTTGAA 58.739 40.000 0.81 0.00 0.00 2.69
324 325 5.838955 TCCAGTTAGTAAGAGGGATCTTGA 58.161 41.667 0.81 0.00 0.00 3.02
325 326 6.546428 TTCCAGTTAGTAAGAGGGATCTTG 57.454 41.667 0.81 0.00 0.00 3.02
326 327 8.855804 TTATTCCAGTTAGTAAGAGGGATCTT 57.144 34.615 0.00 0.00 0.00 2.40
327 328 8.855804 TTTATTCCAGTTAGTAAGAGGGATCT 57.144 34.615 0.00 0.00 0.00 2.75
328 329 9.549078 CTTTTATTCCAGTTAGTAAGAGGGATC 57.451 37.037 0.00 0.00 0.00 3.36
329 330 9.280456 TCTTTTATTCCAGTTAGTAAGAGGGAT 57.720 33.333 1.10 1.10 0.00 3.85
330 331 8.674925 TCTTTTATTCCAGTTAGTAAGAGGGA 57.325 34.615 1.75 0.00 0.00 4.20
331 332 9.907229 ATTCTTTTATTCCAGTTAGTAAGAGGG 57.093 33.333 1.75 0.00 0.00 4.30
349 350 9.798994 GACGGAACAGATCTACTAATTCTTTTA 57.201 33.333 0.00 0.00 0.00 1.52
350 351 7.764901 GGACGGAACAGATCTACTAATTCTTTT 59.235 37.037 0.00 0.00 0.00 2.27
351 352 7.093465 TGGACGGAACAGATCTACTAATTCTTT 60.093 37.037 0.00 0.00 0.00 2.52
352 353 6.380274 TGGACGGAACAGATCTACTAATTCTT 59.620 38.462 0.00 0.00 0.00 2.52
353 354 5.892119 TGGACGGAACAGATCTACTAATTCT 59.108 40.000 0.00 0.00 0.00 2.40
354 355 6.145338 TGGACGGAACAGATCTACTAATTC 57.855 41.667 0.00 0.00 0.00 2.17
355 356 6.540438 TTGGACGGAACAGATCTACTAATT 57.460 37.500 0.00 0.00 0.00 1.40
356 357 6.540438 TTTGGACGGAACAGATCTACTAAT 57.460 37.500 0.00 0.00 0.00 1.73
357 358 5.988310 TTTGGACGGAACAGATCTACTAA 57.012 39.130 0.00 0.00 0.00 2.24
358 359 5.988310 TTTTGGACGGAACAGATCTACTA 57.012 39.130 0.00 0.00 0.00 1.82
359 360 4.884668 TTTTGGACGGAACAGATCTACT 57.115 40.909 0.00 0.00 0.00 2.57
360 361 4.332819 CCATTTTGGACGGAACAGATCTAC 59.667 45.833 0.00 0.00 40.96 2.59
361 362 4.513442 CCATTTTGGACGGAACAGATCTA 58.487 43.478 0.00 0.00 40.96 1.98
362 363 3.347216 CCATTTTGGACGGAACAGATCT 58.653 45.455 0.00 0.00 40.96 2.75
363 364 2.423538 CCCATTTTGGACGGAACAGATC 59.576 50.000 0.00 0.00 40.96 2.75
364 365 2.041081 TCCCATTTTGGACGGAACAGAT 59.959 45.455 0.00 0.00 40.96 2.90
365 366 1.422024 TCCCATTTTGGACGGAACAGA 59.578 47.619 0.00 0.00 40.96 3.41
366 367 1.904287 TCCCATTTTGGACGGAACAG 58.096 50.000 0.00 0.00 40.96 3.16
367 368 2.366640 TTCCCATTTTGGACGGAACA 57.633 45.000 0.00 0.00 40.96 3.18
368 369 2.094234 CCATTCCCATTTTGGACGGAAC 60.094 50.000 0.00 0.00 40.96 3.62
369 370 2.175202 CCATTCCCATTTTGGACGGAA 58.825 47.619 0.00 0.00 40.96 4.30
370 371 1.618345 CCCATTCCCATTTTGGACGGA 60.618 52.381 0.00 0.00 40.96 4.69
371 372 0.823460 CCCATTCCCATTTTGGACGG 59.177 55.000 0.00 0.00 40.96 4.79
372 373 0.175531 GCCCATTCCCATTTTGGACG 59.824 55.000 0.00 0.00 40.96 4.79
373 374 0.175531 CGCCCATTCCCATTTTGGAC 59.824 55.000 0.00 0.00 40.96 4.02
374 375 1.612395 GCGCCCATTCCCATTTTGGA 61.612 55.000 0.00 0.00 40.96 3.53
375 376 1.153389 GCGCCCATTCCCATTTTGG 60.153 57.895 0.00 0.00 37.25 3.28
376 377 1.067516 CTAGCGCCCATTCCCATTTTG 59.932 52.381 2.29 0.00 0.00 2.44
377 378 1.402787 CTAGCGCCCATTCCCATTTT 58.597 50.000 2.29 0.00 0.00 1.82
378 379 0.468029 CCTAGCGCCCATTCCCATTT 60.468 55.000 2.29 0.00 0.00 2.32
379 380 1.151450 CCTAGCGCCCATTCCCATT 59.849 57.895 2.29 0.00 0.00 3.16
380 381 2.833913 CCCTAGCGCCCATTCCCAT 61.834 63.158 2.29 0.00 0.00 4.00
381 382 3.488569 CCCTAGCGCCCATTCCCA 61.489 66.667 2.29 0.00 0.00 4.37
382 383 1.702022 TAACCCTAGCGCCCATTCCC 61.702 60.000 2.29 0.00 0.00 3.97
383 384 0.400594 ATAACCCTAGCGCCCATTCC 59.599 55.000 2.29 0.00 0.00 3.01
384 385 1.071699 TCATAACCCTAGCGCCCATTC 59.928 52.381 2.29 0.00 0.00 2.67
385 386 1.136828 TCATAACCCTAGCGCCCATT 58.863 50.000 2.29 0.00 0.00 3.16
386 387 1.136828 TTCATAACCCTAGCGCCCAT 58.863 50.000 2.29 0.00 0.00 4.00
387 388 0.179468 GTTCATAACCCTAGCGCCCA 59.821 55.000 2.29 0.00 0.00 5.36
388 389 0.468648 AGTTCATAACCCTAGCGCCC 59.531 55.000 2.29 0.00 0.00 6.13
389 390 2.327200 AAGTTCATAACCCTAGCGCC 57.673 50.000 2.29 0.00 0.00 6.53
390 391 6.872020 TGATTATAAGTTCATAACCCTAGCGC 59.128 38.462 0.00 0.00 0.00 5.92
391 392 8.873830 CATGATTATAAGTTCATAACCCTAGCG 58.126 37.037 2.05 0.00 31.50 4.26
392 393 9.944376 TCATGATTATAAGTTCATAACCCTAGC 57.056 33.333 0.00 0.00 31.50 3.42
402 403 8.968242 CGAGTCGATTTCATGATTATAAGTTCA 58.032 33.333 6.73 0.00 0.00 3.18
403 404 9.181805 TCGAGTCGATTTCATGATTATAAGTTC 57.818 33.333 12.09 0.00 0.00 3.01
404 405 9.698309 ATCGAGTCGATTTCATGATTATAAGTT 57.302 29.630 22.14 0.00 44.59 2.66
405 406 9.347934 GATCGAGTCGATTTCATGATTATAAGT 57.652 33.333 27.65 1.12 47.00 2.24
406 407 9.346725 TGATCGAGTCGATTTCATGATTATAAG 57.653 33.333 27.65 0.00 47.00 1.73
407 408 9.860898 ATGATCGAGTCGATTTCATGATTATAA 57.139 29.630 27.65 0.00 47.00 0.98
408 409 9.508567 GATGATCGAGTCGATTTCATGATTATA 57.491 33.333 27.74 4.28 47.00 0.98
409 410 8.031277 TGATGATCGAGTCGATTTCATGATTAT 58.969 33.333 27.74 10.67 47.00 1.28
410 411 7.370383 TGATGATCGAGTCGATTTCATGATTA 58.630 34.615 27.74 13.56 47.00 1.75
411 412 6.218746 TGATGATCGAGTCGATTTCATGATT 58.781 36.000 27.74 11.57 47.00 2.57
412 413 5.776744 TGATGATCGAGTCGATTTCATGAT 58.223 37.500 27.74 11.87 47.00 2.45
413 414 5.009010 TCTGATGATCGAGTCGATTTCATGA 59.991 40.000 27.74 21.20 47.00 3.07
414 415 5.218139 TCTGATGATCGAGTCGATTTCATG 58.782 41.667 27.74 22.58 47.00 3.07
415 416 5.444663 TCTGATGATCGAGTCGATTTCAT 57.555 39.130 27.90 26.40 47.00 2.57
416 417 4.900635 TCTGATGATCGAGTCGATTTCA 57.099 40.909 27.65 27.15 47.00 2.69
417 418 9.561270 TTATAATCTGATGATCGAGTCGATTTC 57.439 33.333 27.65 24.66 47.00 2.17
418 419 9.566530 CTTATAATCTGATGATCGAGTCGATTT 57.433 33.333 27.65 18.51 47.00 2.17
419 420 8.735315 ACTTATAATCTGATGATCGAGTCGATT 58.265 33.333 27.65 14.18 47.00 3.34
421 422 7.674471 ACTTATAATCTGATGATCGAGTCGA 57.326 36.000 19.06 19.06 41.13 4.20
422 423 8.017946 TGAACTTATAATCTGATGATCGAGTCG 58.982 37.037 6.09 6.09 31.51 4.18
423 424 9.853555 ATGAACTTATAATCTGATGATCGAGTC 57.146 33.333 0.00 0.00 31.51 3.36
426 427 9.645059 GGAATGAACTTATAATCTGATGATCGA 57.355 33.333 0.00 0.00 31.51 3.59
427 428 9.428097 TGGAATGAACTTATAATCTGATGATCG 57.572 33.333 0.00 0.00 31.51 3.69
432 433 9.658799 CGGTATGGAATGAACTTATAATCTGAT 57.341 33.333 0.00 0.00 0.00 2.90
433 434 8.866093 TCGGTATGGAATGAACTTATAATCTGA 58.134 33.333 0.00 0.00 0.00 3.27
434 435 9.489084 TTCGGTATGGAATGAACTTATAATCTG 57.511 33.333 0.00 0.00 0.00 2.90
435 436 9.490379 GTTCGGTATGGAATGAACTTATAATCT 57.510 33.333 0.00 0.00 38.11 2.40
436 437 8.718734 GGTTCGGTATGGAATGAACTTATAATC 58.281 37.037 4.23 0.00 40.34 1.75
437 438 8.215050 TGGTTCGGTATGGAATGAACTTATAAT 58.785 33.333 4.23 0.00 40.34 1.28
438 439 7.566569 TGGTTCGGTATGGAATGAACTTATAA 58.433 34.615 4.23 0.00 40.34 0.98
439 440 7.070198 TCTGGTTCGGTATGGAATGAACTTATA 59.930 37.037 4.23 0.00 40.34 0.98
440 441 5.996644 TGGTTCGGTATGGAATGAACTTAT 58.003 37.500 4.23 0.00 40.34 1.73
441 442 5.188163 TCTGGTTCGGTATGGAATGAACTTA 59.812 40.000 4.23 0.00 40.34 2.24
442 443 4.019681 TCTGGTTCGGTATGGAATGAACTT 60.020 41.667 4.23 0.00 40.34 2.66
443 444 3.517901 TCTGGTTCGGTATGGAATGAACT 59.482 43.478 4.23 0.00 40.34 3.01
444 445 3.621715 GTCTGGTTCGGTATGGAATGAAC 59.378 47.826 0.00 0.00 39.89 3.18
445 446 3.370103 GGTCTGGTTCGGTATGGAATGAA 60.370 47.826 0.00 0.00 0.00 2.57
446 447 2.169769 GGTCTGGTTCGGTATGGAATGA 59.830 50.000 0.00 0.00 0.00 2.57
447 448 2.561569 GGTCTGGTTCGGTATGGAATG 58.438 52.381 0.00 0.00 0.00 2.67
448 449 1.138266 CGGTCTGGTTCGGTATGGAAT 59.862 52.381 0.00 0.00 0.00 3.01
449 450 0.533491 CGGTCTGGTTCGGTATGGAA 59.467 55.000 0.00 0.00 0.00 3.53
450 451 0.612732 ACGGTCTGGTTCGGTATGGA 60.613 55.000 0.00 0.00 0.00 3.41
451 452 0.459585 CACGGTCTGGTTCGGTATGG 60.460 60.000 0.00 0.00 0.00 2.74
452 453 1.082117 GCACGGTCTGGTTCGGTATG 61.082 60.000 0.00 0.00 0.00 2.39
453 454 1.217244 GCACGGTCTGGTTCGGTAT 59.783 57.895 0.00 0.00 0.00 2.73
454 455 2.201708 TGCACGGTCTGGTTCGGTA 61.202 57.895 0.00 0.00 0.00 4.02
455 456 3.542676 TGCACGGTCTGGTTCGGT 61.543 61.111 0.00 0.00 0.00 4.69
456 457 3.041940 GTGCACGGTCTGGTTCGG 61.042 66.667 0.00 0.00 0.00 4.30
457 458 1.227999 AATGTGCACGGTCTGGTTCG 61.228 55.000 13.13 0.00 0.00 3.95
458 459 0.517316 GAATGTGCACGGTCTGGTTC 59.483 55.000 13.13 4.19 0.00 3.62
459 460 1.227999 CGAATGTGCACGGTCTGGTT 61.228 55.000 13.13 0.00 0.00 3.67
460 461 1.667830 CGAATGTGCACGGTCTGGT 60.668 57.895 13.13 0.00 0.00 4.00
461 462 1.227999 AACGAATGTGCACGGTCTGG 61.228 55.000 13.13 1.66 0.00 3.86
462 463 0.586319 AAACGAATGTGCACGGTCTG 59.414 50.000 13.13 10.27 0.00 3.51
463 464 1.305201 AAAACGAATGTGCACGGTCT 58.695 45.000 13.13 0.00 0.00 3.85
464 465 2.041244 GAAAAACGAATGTGCACGGTC 58.959 47.619 13.13 10.79 0.00 4.79
465 466 1.595976 CGAAAAACGAATGTGCACGGT 60.596 47.619 13.13 1.37 45.77 4.83
466 467 1.041726 CGAAAAACGAATGTGCACGG 58.958 50.000 13.13 3.91 45.77 4.94
477 478 5.562248 TGACTTTTTATGCGATCGAAAAACG 59.438 36.000 21.57 18.86 44.09 3.60
478 479 6.904954 TGACTTTTTATGCGATCGAAAAAC 57.095 33.333 21.57 11.81 30.89 2.43
479 480 7.301789 TCATGACTTTTTATGCGATCGAAAAA 58.698 30.769 21.57 19.86 32.63 1.94
480 481 6.836953 TCATGACTTTTTATGCGATCGAAAA 58.163 32.000 21.57 13.84 0.00 2.29
481 482 6.312672 TCTCATGACTTTTTATGCGATCGAAA 59.687 34.615 21.57 7.89 0.00 3.46
482 483 5.810074 TCTCATGACTTTTTATGCGATCGAA 59.190 36.000 21.57 9.49 0.00 3.71
483 484 5.348164 TCTCATGACTTTTTATGCGATCGA 58.652 37.500 21.57 4.34 0.00 3.59
484 485 5.641777 TCTCATGACTTTTTATGCGATCG 57.358 39.130 11.69 11.69 0.00 3.69
485 486 7.182361 TGATCTCATGACTTTTTATGCGATC 57.818 36.000 9.18 9.18 42.00 3.69
486 487 7.558161 TTGATCTCATGACTTTTTATGCGAT 57.442 32.000 0.00 0.00 32.98 4.58
487 488 6.983474 TTGATCTCATGACTTTTTATGCGA 57.017 33.333 0.00 0.00 0.00 5.10
488 489 8.451687 TTTTTGATCTCATGACTTTTTATGCG 57.548 30.769 0.00 0.00 0.00 4.73
510 511 6.156519 AGTGTCAAAAACGCTCTTTCTTTTT 58.843 32.000 0.00 0.00 45.69 1.94
511 512 5.709966 AGTGTCAAAAACGCTCTTTCTTTT 58.290 33.333 0.00 0.00 45.69 2.27
512 513 5.310720 AGTGTCAAAAACGCTCTTTCTTT 57.689 34.783 0.00 0.00 45.69 2.52
513 514 4.965119 AGTGTCAAAAACGCTCTTTCTT 57.035 36.364 0.00 0.00 45.69 2.52
514 515 6.038271 ACATTAGTGTCAAAAACGCTCTTTCT 59.962 34.615 0.00 0.00 45.69 2.52
515 516 6.199393 ACATTAGTGTCAAAAACGCTCTTTC 58.801 36.000 0.00 0.00 45.69 2.62
516 517 6.131544 ACATTAGTGTCAAAAACGCTCTTT 57.868 33.333 0.00 0.00 45.69 2.52
517 518 5.751243 ACATTAGTGTCAAAAACGCTCTT 57.249 34.783 0.00 0.00 45.69 2.85
518 519 6.220930 TCTACATTAGTGTCAAAAACGCTCT 58.779 36.000 0.00 0.00 45.69 4.09
519 520 6.462073 TCTACATTAGTGTCAAAAACGCTC 57.538 37.500 0.00 0.00 45.69 5.03
521 522 9.601971 TTTATTCTACATTAGTGTCAAAAACGC 57.398 29.630 0.00 0.00 39.77 4.84
546 547 9.866655 TCTGTCCCATAATATAAGAGCATTTTT 57.133 29.630 0.00 0.00 0.00 1.94
547 548 9.512588 CTCTGTCCCATAATATAAGAGCATTTT 57.487 33.333 0.00 0.00 0.00 1.82
548 549 8.105829 CCTCTGTCCCATAATATAAGAGCATTT 58.894 37.037 0.00 0.00 0.00 2.32
549 550 7.311549 CCCTCTGTCCCATAATATAAGAGCATT 60.312 40.741 0.00 0.00 0.00 3.56
550 551 6.157645 CCCTCTGTCCCATAATATAAGAGCAT 59.842 42.308 0.00 0.00 0.00 3.79
551 552 5.485353 CCCTCTGTCCCATAATATAAGAGCA 59.515 44.000 0.00 0.00 0.00 4.26
552 553 5.721960 TCCCTCTGTCCCATAATATAAGAGC 59.278 44.000 0.00 0.00 0.00 4.09
553 554 7.235606 TGTTCCCTCTGTCCCATAATATAAGAG 59.764 40.741 0.00 0.00 0.00 2.85
554 555 7.079700 TGTTCCCTCTGTCCCATAATATAAGA 58.920 38.462 0.00 0.00 0.00 2.10
555 556 7.316393 TGTTCCCTCTGTCCCATAATATAAG 57.684 40.000 0.00 0.00 0.00 1.73
556 557 7.699709 TTGTTCCCTCTGTCCCATAATATAA 57.300 36.000 0.00 0.00 0.00 0.98
557 558 7.699709 TTTGTTCCCTCTGTCCCATAATATA 57.300 36.000 0.00 0.00 0.00 0.86
558 559 6.590656 TTTGTTCCCTCTGTCCCATAATAT 57.409 37.500 0.00 0.00 0.00 1.28
643 644 6.849085 TGGGCTGTACAAATAAACAATGAT 57.151 33.333 0.00 0.00 0.00 2.45
728 729 1.529438 CGTCGCTTTCCTTGTTTGCTA 59.471 47.619 0.00 0.00 0.00 3.49
779 780 9.361315 GCCGTCTTGTGGTATTTTTAATTTTAT 57.639 29.630 0.00 0.00 0.00 1.40
785 786 5.507650 GGTTGCCGTCTTGTGGTATTTTTAA 60.508 40.000 0.00 0.00 0.00 1.52
787 788 3.243602 GGTTGCCGTCTTGTGGTATTTTT 60.244 43.478 0.00 0.00 0.00 1.94
933 950 2.027561 AGCATTGGCACCGAACTACTTA 60.028 45.455 0.00 0.00 44.61 2.24
958 975 6.097129 ACTCACCAGATTAGGTTCTAGTAAGC 59.903 42.308 0.00 0.00 40.77 3.09
960 977 7.453752 ACAACTCACCAGATTAGGTTCTAGTAA 59.546 37.037 0.00 0.00 40.77 2.24
976 1002 1.761449 AATGTGTGCACAACTCACCA 58.239 45.000 23.59 14.67 45.41 4.17
987 1013 3.129287 CCTTCTCCATGGTAAATGTGTGC 59.871 47.826 12.58 0.00 0.00 4.57
1044 1070 4.827087 ATGGCGTGCTGCTCCGAG 62.827 66.667 14.66 0.00 45.43 4.63
1047 1073 2.117156 ATCAATGGCGTGCTGCTCC 61.117 57.895 0.00 0.10 45.43 4.70
1077 1103 3.785859 TCGCCATGCTCCACCTCC 61.786 66.667 0.00 0.00 0.00 4.30
1167 1193 2.029470 CCTCGTGCTCTTCTTCTTCTGT 60.029 50.000 0.00 0.00 0.00 3.41
1277 1303 5.980715 TGTAAGCATTTCGTAGCATATTCGA 59.019 36.000 0.00 0.00 0.00 3.71
1412 1438 3.866066 GCATGACAAAGTCTGCCAGAGTA 60.866 47.826 1.70 0.00 33.76 2.59
1530 1557 9.874205 AATTCTACATATCCACCAAAAATGTTG 57.126 29.630 0.00 0.00 33.15 3.33
1563 1590 6.627243 TCATCCTGATGAGCATTTCAAAAAG 58.373 36.000 5.74 0.00 42.42 2.27
1564 1591 6.593268 TCATCCTGATGAGCATTTCAAAAA 57.407 33.333 5.74 0.00 42.42 1.94
1588 1615 4.038642 TGTTTGGAACCCTCTGCAAAATAC 59.961 41.667 0.00 0.00 0.00 1.89
1747 1775 5.657474 TCCACCTACATTCGAGTTCAATAC 58.343 41.667 0.00 0.00 0.00 1.89
1751 1779 4.954202 AGTATCCACCTACATTCGAGTTCA 59.046 41.667 0.00 0.00 0.00 3.18
1788 1816 2.027192 GTCCACTCCATAAGCAAGGTCA 60.027 50.000 0.00 0.00 0.00 4.02
2193 2222 4.687018 GTGACCATGTATACAACGAACACA 59.313 41.667 10.14 2.11 0.00 3.72
2202 2231 3.441222 AGAACGTCGTGACCATGTATACA 59.559 43.478 8.27 8.27 0.00 2.29
2261 2290 2.223745 CATCATTGACATCGCCATCCA 58.776 47.619 0.00 0.00 0.00 3.41
2302 2331 5.012148 GGATAGCATCCTAAAGGTTAGCTCA 59.988 44.000 13.16 0.00 46.19 4.26
2519 2549 9.476202 CAGCTACTTATACATAACAGTGCAATA 57.524 33.333 0.00 0.00 0.00 1.90
2520 2550 7.041780 GCAGCTACTTATACATAACAGTGCAAT 60.042 37.037 0.00 0.00 0.00 3.56
2523 2553 5.753438 TGCAGCTACTTATACATAACAGTGC 59.247 40.000 0.00 0.00 0.00 4.40
2576 2607 9.099454 GCACTTTCTAGCTTAATGTGTAGTATT 57.901 33.333 19.66 0.00 35.52 1.89
2715 2746 3.763897 CCAACCTTAACAATCCTTCTGGG 59.236 47.826 0.00 0.00 0.00 4.45
2784 2815 9.586435 GGAAAATACTTGAATGGGTGAAATAAG 57.414 33.333 0.00 0.00 0.00 1.73
2795 2826 9.927668 ACATAAAACAGGGAAAATACTTGAATG 57.072 29.630 0.00 0.00 0.00 2.67
2842 2873 5.300286 GTGGATTCCAATTGTTCCTGATAGG 59.700 44.000 7.05 0.00 34.18 2.57
2851 2882 3.706086 GGCCATAGTGGATTCCAATTGTT 59.294 43.478 11.42 0.00 40.96 2.83
3056 3087 3.440522 GGAAATGGACTGTTAGGACAAGC 59.559 47.826 0.00 0.00 34.85 4.01
3060 3091 3.259902 GTCGGAAATGGACTGTTAGGAC 58.740 50.000 0.00 0.00 0.00 3.85
3069 3100 3.139077 AGTTCAAGTGTCGGAAATGGAC 58.861 45.455 0.00 0.00 34.99 4.02
3503 3534 2.489938 TACAGGCTCCAAATGTCACC 57.510 50.000 0.00 0.00 0.00 4.02
3556 3587 2.290896 TGGATCCAGTTAACCTGCCAAG 60.291 50.000 11.44 0.00 40.06 3.61
3805 3843 8.085909 TGACAATAGAAGAAGACGTTTATCACA 58.914 33.333 0.00 0.00 0.00 3.58
3806 3844 8.462143 TGACAATAGAAGAAGACGTTTATCAC 57.538 34.615 0.00 0.00 0.00 3.06
3807 3845 9.483916 TTTGACAATAGAAGAAGACGTTTATCA 57.516 29.630 0.00 0.00 0.00 2.15
3813 3852 8.154649 ACAAATTTGACAATAGAAGAAGACGT 57.845 30.769 24.64 0.00 0.00 4.34
3905 5354 7.331193 CGGGTGCTTTGTTATAATAGGAGTATC 59.669 40.741 0.00 0.00 0.00 2.24
3907 5356 6.324512 TCGGGTGCTTTGTTATAATAGGAGTA 59.675 38.462 0.00 0.00 0.00 2.59
3908 5357 5.129815 TCGGGTGCTTTGTTATAATAGGAGT 59.870 40.000 0.00 0.00 0.00 3.85
3909 5358 5.607477 TCGGGTGCTTTGTTATAATAGGAG 58.393 41.667 0.00 0.00 0.00 3.69
3910 5359 5.617528 TCGGGTGCTTTGTTATAATAGGA 57.382 39.130 0.00 0.00 0.00 2.94
3911 5360 5.008316 GGTTCGGGTGCTTTGTTATAATAGG 59.992 44.000 0.00 0.00 0.00 2.57
3912 5361 5.277154 CGGTTCGGGTGCTTTGTTATAATAG 60.277 44.000 0.00 0.00 0.00 1.73
3913 5362 4.571580 CGGTTCGGGTGCTTTGTTATAATA 59.428 41.667 0.00 0.00 0.00 0.98
3914 5363 3.375922 CGGTTCGGGTGCTTTGTTATAAT 59.624 43.478 0.00 0.00 0.00 1.28
3915 5364 2.743126 CGGTTCGGGTGCTTTGTTATAA 59.257 45.455 0.00 0.00 0.00 0.98
3931 5380 2.099098 CCATCCTGCCATTAAACGGTTC 59.901 50.000 0.00 0.00 0.00 3.62
3938 5387 1.410083 GGCTGACCATCCTGCCATTAA 60.410 52.381 0.00 0.00 46.45 1.40
3947 5396 0.038166 TTCCAACAGGCTGACCATCC 59.962 55.000 23.66 0.00 39.06 3.51
3996 5445 7.122650 ACACTTTTGGTACCGTAGCTTATACTA 59.877 37.037 7.57 0.00 0.00 1.82
3998 5447 6.101997 ACACTTTTGGTACCGTAGCTTATAC 58.898 40.000 7.57 0.00 0.00 1.47
4188 5639 1.773391 ATGGATGGAGCCCTGGAGG 60.773 63.158 0.00 0.00 39.47 4.30
4276 5732 3.709987 GCGGATAAGAGCAAAAATGCAT 58.290 40.909 0.00 0.00 37.25 3.96
4295 5751 1.485397 CAATGATCAGAGGAGTCGCG 58.515 55.000 0.00 0.00 0.00 5.87
4355 5817 3.297620 CCAACACAGGGGCAGTGC 61.298 66.667 6.55 6.55 40.59 4.40
4391 5854 6.620949 GCCTTCTCGTTTGTTTCTTCCTAATC 60.621 42.308 0.00 0.00 0.00 1.75
4423 5886 0.903942 AAGAAGGGAGCAGAGCAGAG 59.096 55.000 0.00 0.00 0.00 3.35
4424 5887 0.612229 CAAGAAGGGAGCAGAGCAGA 59.388 55.000 0.00 0.00 0.00 4.26
4425 5888 0.324285 ACAAGAAGGGAGCAGAGCAG 59.676 55.000 0.00 0.00 0.00 4.24
4426 5889 0.322975 GACAAGAAGGGAGCAGAGCA 59.677 55.000 0.00 0.00 0.00 4.26
4427 5890 0.392327 GGACAAGAAGGGAGCAGAGC 60.392 60.000 0.00 0.00 0.00 4.09
4436 5899 3.922171 AGCAGGAATAGGACAAGAAGG 57.078 47.619 0.00 0.00 0.00 3.46
4496 5959 6.258727 AGACGAATTGCACTTGACATAATAGG 59.741 38.462 0.00 0.00 0.00 2.57
4500 5963 4.754618 ACAGACGAATTGCACTTGACATAA 59.245 37.500 0.00 0.00 0.00 1.90
4501 5964 4.314961 ACAGACGAATTGCACTTGACATA 58.685 39.130 0.00 0.00 0.00 2.29
4502 5965 3.141398 ACAGACGAATTGCACTTGACAT 58.859 40.909 0.00 0.00 0.00 3.06
4503 5966 2.560504 ACAGACGAATTGCACTTGACA 58.439 42.857 0.00 0.00 0.00 3.58
4504 5967 4.447724 TCTTACAGACGAATTGCACTTGAC 59.552 41.667 0.00 0.00 0.00 3.18
4505 5968 4.627058 TCTTACAGACGAATTGCACTTGA 58.373 39.130 0.00 0.00 0.00 3.02
4587 7046 2.014128 CTTAGGTACCGGGCAACATTG 58.986 52.381 6.32 0.00 39.74 2.82
4665 7124 6.886178 AAGGCCCAACTTACTAGAGAAATA 57.114 37.500 0.00 0.00 0.00 1.40
4666 7125 5.780958 AAGGCCCAACTTACTAGAGAAAT 57.219 39.130 0.00 0.00 0.00 2.17
4679 7138 2.227149 CCTACGTTACAAAAGGCCCAAC 59.773 50.000 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.