Multiple sequence alignment - TraesCS4D01G080600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G080600 chr4D 100.000 2891 0 0 1 2891 54623141 54620251 0.000000e+00 5339.0
1 TraesCS4D01G080600 chr4B 90.086 2562 157 45 272 2794 80674158 80671655 0.000000e+00 3234.0
2 TraesCS4D01G080600 chr4A 87.906 2125 162 43 267 2350 542498424 542500494 0.000000e+00 2412.0
3 TraesCS4D01G080600 chr4A 90.909 462 24 5 2341 2798 542500703 542501150 3.190000e-169 604.0
4 TraesCS4D01G080600 chr4A 85.947 491 35 15 2231 2712 542523436 542523901 7.200000e-136 494.0
5 TraesCS4D01G080600 chr4A 79.288 309 51 9 1192 1492 658351929 658352232 1.360000e-48 204.0
6 TraesCS4D01G080600 chr4A 79.412 306 50 9 1195 1492 658922415 658922115 1.360000e-48 204.0
7 TraesCS4D01G080600 chr4A 89.130 92 10 0 1800 1891 658352391 658352482 6.550000e-22 115.0
8 TraesCS4D01G080600 chr4A 89.130 92 10 0 1800 1891 658921956 658921865 6.550000e-22 115.0
9 TraesCS4D01G080600 chr4A 89.011 91 10 0 1801 1891 658413266 658413356 2.350000e-21 113.0
10 TraesCS4D01G080600 chr2A 88.945 199 20 2 1194 1391 699381072 699380875 8.000000e-61 244.0
11 TraesCS4D01G080600 chr7D 80.392 306 51 6 1190 1486 45759936 45760241 1.040000e-54 224.0
12 TraesCS4D01G080600 chr7D 92.771 83 6 0 2809 2891 615443413 615443495 1.410000e-23 121.0
13 TraesCS4D01G080600 chr7D 88.542 96 9 2 1797 1891 45760463 45760557 6.550000e-22 115.0
14 TraesCS4D01G080600 chr7D 88.506 87 7 1 1020 1106 562258827 562258744 5.100000e-18 102.0
15 TraesCS4D01G080600 chr7D 80.508 118 22 1 263 379 420766787 420766670 3.970000e-14 89.8
16 TraesCS4D01G080600 chr5D 85.279 197 15 3 1194 1388 383079203 383079387 1.060000e-44 191.0
17 TraesCS4D01G080600 chr3A 90.226 133 12 1 1258 1390 737993403 737993272 3.830000e-39 172.0
18 TraesCS4D01G080600 chr1A 88.710 124 14 0 1263 1386 45528004 45528127 4.990000e-33 152.0
19 TraesCS4D01G080600 chr1B 96.104 77 3 0 2815 2891 651566705 651566629 3.020000e-25 126.0
20 TraesCS4D01G080600 chr1B 79.082 196 25 9 906 1101 29289295 29289474 1.410000e-23 121.0
21 TraesCS4D01G080600 chr5B 96.000 75 3 0 2817 2891 681663747 681663821 3.910000e-24 122.0
22 TraesCS4D01G080600 chrUn 94.805 77 4 0 2815 2891 94312875 94312951 1.410000e-23 121.0
23 TraesCS4D01G080600 chrUn 94.805 77 4 0 2815 2891 94329539 94329615 1.410000e-23 121.0
24 TraesCS4D01G080600 chrUn 94.805 77 4 0 2815 2891 94342232 94342308 1.410000e-23 121.0
25 TraesCS4D01G080600 chrUn 94.805 77 4 0 2815 2891 94371268 94371344 1.410000e-23 121.0
26 TraesCS4D01G080600 chrUn 94.805 77 4 0 2815 2891 366100629 366100705 1.410000e-23 121.0
27 TraesCS4D01G080600 chrUn 94.805 77 4 0 2815 2891 393590377 393590301 1.410000e-23 121.0
28 TraesCS4D01G080600 chr6A 92.500 40 3 0 319 358 508335328 508335289 1.120000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G080600 chr4D 54620251 54623141 2890 True 5339 5339 100.0000 1 2891 1 chr4D.!!$R1 2890
1 TraesCS4D01G080600 chr4B 80671655 80674158 2503 True 3234 3234 90.0860 272 2794 1 chr4B.!!$R1 2522
2 TraesCS4D01G080600 chr4A 542498424 542501150 2726 False 1508 2412 89.4075 267 2798 2 chr4A.!!$F3 2531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.032130 TCAACTGACAGCGGTGAGAC 59.968 55.0 23.44 12.30 32.08 3.36 F
249 250 0.035317 TGTCCTCACAGATGTGGTGC 59.965 55.0 12.77 2.82 45.65 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1171 1203 0.107116 TCAGACTCCTCTACCTCCGC 60.107 60.0 0.00 0.0 0.00 5.54 R
2237 2307 0.179100 GCTACAGCTGCCGATCAAGA 60.179 55.0 15.27 0.0 38.21 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.759205 GGTTCCCCAAGCCGCCAT 62.759 66.667 0.00 0.00 0.00 4.40
31 32 3.140814 GTTCCCCAAGCCGCCATC 61.141 66.667 0.00 0.00 0.00 3.51
32 33 4.794648 TTCCCCAAGCCGCCATCG 62.795 66.667 0.00 0.00 0.00 3.84
55 56 3.627645 CTATGGCAGCAGGAGGATG 57.372 57.895 0.00 0.00 35.52 3.51
56 57 0.036448 CTATGGCAGCAGGAGGATGG 59.964 60.000 0.00 0.00 32.19 3.51
57 58 1.421346 TATGGCAGCAGGAGGATGGG 61.421 60.000 0.00 0.00 32.19 4.00
58 59 4.201122 GGCAGCAGGAGGATGGGG 62.201 72.222 0.00 0.00 32.19 4.96
59 60 4.201122 GCAGCAGGAGGATGGGGG 62.201 72.222 0.00 0.00 32.19 5.40
60 61 2.367377 CAGCAGGAGGATGGGGGA 60.367 66.667 0.00 0.00 0.00 4.81
61 62 2.002977 CAGCAGGAGGATGGGGGAA 61.003 63.158 0.00 0.00 0.00 3.97
62 63 2.003548 AGCAGGAGGATGGGGGAAC 61.004 63.158 0.00 0.00 0.00 3.62
76 77 3.614399 GGAACCCTGGATATGAGCG 57.386 57.895 0.00 0.00 0.00 5.03
77 78 0.759346 GGAACCCTGGATATGAGCGT 59.241 55.000 0.00 0.00 0.00 5.07
78 79 1.141053 GGAACCCTGGATATGAGCGTT 59.859 52.381 0.00 0.00 0.00 4.84
79 80 2.421529 GGAACCCTGGATATGAGCGTTT 60.422 50.000 0.00 0.00 0.00 3.60
80 81 2.332063 ACCCTGGATATGAGCGTTTG 57.668 50.000 0.00 0.00 0.00 2.93
81 82 1.134098 ACCCTGGATATGAGCGTTTGG 60.134 52.381 0.00 0.00 0.00 3.28
82 83 1.140852 CCCTGGATATGAGCGTTTGGA 59.859 52.381 0.00 0.00 0.00 3.53
83 84 2.224621 CCCTGGATATGAGCGTTTGGAT 60.225 50.000 0.00 0.00 0.00 3.41
84 85 3.480470 CCTGGATATGAGCGTTTGGATT 58.520 45.455 0.00 0.00 0.00 3.01
85 86 3.885297 CCTGGATATGAGCGTTTGGATTT 59.115 43.478 0.00 0.00 0.00 2.17
86 87 4.261322 CCTGGATATGAGCGTTTGGATTTG 60.261 45.833 0.00 0.00 0.00 2.32
87 88 4.269183 TGGATATGAGCGTTTGGATTTGT 58.731 39.130 0.00 0.00 0.00 2.83
88 89 4.096231 TGGATATGAGCGTTTGGATTTGTG 59.904 41.667 0.00 0.00 0.00 3.33
89 90 4.498009 GGATATGAGCGTTTGGATTTGTGG 60.498 45.833 0.00 0.00 0.00 4.17
90 91 1.686355 TGAGCGTTTGGATTTGTGGT 58.314 45.000 0.00 0.00 0.00 4.16
91 92 1.336440 TGAGCGTTTGGATTTGTGGTG 59.664 47.619 0.00 0.00 0.00 4.17
92 93 0.673437 AGCGTTTGGATTTGTGGTGG 59.327 50.000 0.00 0.00 0.00 4.61
93 94 0.671251 GCGTTTGGATTTGTGGTGGA 59.329 50.000 0.00 0.00 0.00 4.02
94 95 1.335872 GCGTTTGGATTTGTGGTGGAG 60.336 52.381 0.00 0.00 0.00 3.86
95 96 1.269448 CGTTTGGATTTGTGGTGGAGG 59.731 52.381 0.00 0.00 0.00 4.30
96 97 2.316108 GTTTGGATTTGTGGTGGAGGT 58.684 47.619 0.00 0.00 0.00 3.85
97 98 3.492337 GTTTGGATTTGTGGTGGAGGTA 58.508 45.455 0.00 0.00 0.00 3.08
98 99 3.433306 TTGGATTTGTGGTGGAGGTAG 57.567 47.619 0.00 0.00 0.00 3.18
99 100 1.633432 TGGATTTGTGGTGGAGGTAGG 59.367 52.381 0.00 0.00 0.00 3.18
100 101 1.913419 GGATTTGTGGTGGAGGTAGGA 59.087 52.381 0.00 0.00 0.00 2.94
101 102 2.509964 GGATTTGTGGTGGAGGTAGGAT 59.490 50.000 0.00 0.00 0.00 3.24
102 103 3.714798 GGATTTGTGGTGGAGGTAGGATA 59.285 47.826 0.00 0.00 0.00 2.59
103 104 4.202367 GGATTTGTGGTGGAGGTAGGATAG 60.202 50.000 0.00 0.00 0.00 2.08
104 105 3.484953 TTGTGGTGGAGGTAGGATAGT 57.515 47.619 0.00 0.00 0.00 2.12
105 106 4.613265 TTGTGGTGGAGGTAGGATAGTA 57.387 45.455 0.00 0.00 0.00 1.82
106 107 4.180377 TGTGGTGGAGGTAGGATAGTAG 57.820 50.000 0.00 0.00 0.00 2.57
107 108 3.530564 TGTGGTGGAGGTAGGATAGTAGT 59.469 47.826 0.00 0.00 0.00 2.73
108 109 4.728350 TGTGGTGGAGGTAGGATAGTAGTA 59.272 45.833 0.00 0.00 0.00 1.82
109 110 5.163120 TGTGGTGGAGGTAGGATAGTAGTAG 60.163 48.000 0.00 0.00 0.00 2.57
110 111 4.353191 TGGTGGAGGTAGGATAGTAGTAGG 59.647 50.000 0.00 0.00 0.00 3.18
111 112 4.353489 GGTGGAGGTAGGATAGTAGTAGGT 59.647 50.000 0.00 0.00 0.00 3.08
112 113 5.163001 GGTGGAGGTAGGATAGTAGTAGGTT 60.163 48.000 0.00 0.00 0.00 3.50
113 114 6.372104 GTGGAGGTAGGATAGTAGTAGGTTT 58.628 44.000 0.00 0.00 0.00 3.27
114 115 6.838090 GTGGAGGTAGGATAGTAGTAGGTTTT 59.162 42.308 0.00 0.00 0.00 2.43
115 116 7.344093 GTGGAGGTAGGATAGTAGTAGGTTTTT 59.656 40.741 0.00 0.00 0.00 1.94
132 133 2.842208 TTTTGTTCAACTGACAGCGG 57.158 45.000 1.25 0.00 0.00 5.52
133 134 1.745232 TTTGTTCAACTGACAGCGGT 58.255 45.000 1.25 0.00 34.29 5.68
134 135 1.013596 TTGTTCAACTGACAGCGGTG 58.986 50.000 14.13 14.13 32.82 4.94
135 136 0.176910 TGTTCAACTGACAGCGGTGA 59.823 50.000 23.44 0.00 32.82 4.02
136 137 0.861837 GTTCAACTGACAGCGGTGAG 59.138 55.000 23.44 11.80 34.09 3.51
137 138 0.750249 TTCAACTGACAGCGGTGAGA 59.250 50.000 23.44 5.87 32.08 3.27
138 139 0.032130 TCAACTGACAGCGGTGAGAC 59.968 55.000 23.44 12.30 32.08 3.36
139 140 1.007271 AACTGACAGCGGTGAGACG 60.007 57.895 23.44 8.82 32.08 4.18
140 141 1.452953 AACTGACAGCGGTGAGACGA 61.453 55.000 23.44 0.00 32.08 4.20
141 142 1.244697 ACTGACAGCGGTGAGACGAT 61.245 55.000 23.44 0.00 32.08 3.73
144 145 2.887568 CAGCGGTGAGACGATGGC 60.888 66.667 9.50 0.00 45.53 4.40
145 146 4.498520 AGCGGTGAGACGATGGCG 62.499 66.667 0.00 0.00 44.79 5.69
146 147 4.492160 GCGGTGAGACGATGGCGA 62.492 66.667 0.00 0.00 41.64 5.54
147 148 2.579787 CGGTGAGACGATGGCGAC 60.580 66.667 0.00 0.00 41.64 5.19
148 149 2.579787 GGTGAGACGATGGCGACG 60.580 66.667 0.00 0.00 41.64 5.12
149 150 2.178521 GTGAGACGATGGCGACGT 59.821 61.111 8.36 8.36 46.58 4.34
150 151 1.443872 GTGAGACGATGGCGACGTT 60.444 57.895 9.78 1.71 43.97 3.99
151 152 1.443702 TGAGACGATGGCGACGTTG 60.444 57.895 9.78 0.00 43.97 4.10
152 153 1.443872 GAGACGATGGCGACGTTGT 60.444 57.895 1.94 1.94 46.91 3.32
154 155 2.337170 ACGATGGCGACGTTGTCA 59.663 55.556 13.47 13.47 39.97 3.58
155 156 1.733041 ACGATGGCGACGTTGTCAG 60.733 57.895 16.46 5.67 39.97 3.51
156 157 2.778679 GATGGCGACGTTGTCAGC 59.221 61.111 16.46 13.51 33.75 4.26
157 158 2.740714 GATGGCGACGTTGTCAGCC 61.741 63.158 14.74 18.99 45.23 4.85
158 159 3.240134 ATGGCGACGTTGTCAGCCT 62.240 57.895 16.46 0.00 45.23 4.58
159 160 3.414700 GGCGACGTTGTCAGCCTG 61.415 66.667 18.72 0.00 43.37 4.85
160 161 3.414700 GCGACGTTGTCAGCCTGG 61.415 66.667 4.37 0.00 32.09 4.45
161 162 2.338620 CGACGTTGTCAGCCTGGA 59.661 61.111 0.00 0.00 32.09 3.86
162 163 1.300620 CGACGTTGTCAGCCTGGAA 60.301 57.895 0.00 0.00 32.09 3.53
163 164 0.670546 CGACGTTGTCAGCCTGGAAT 60.671 55.000 0.00 0.00 32.09 3.01
164 165 1.403647 CGACGTTGTCAGCCTGGAATA 60.404 52.381 0.00 0.00 32.09 1.75
165 166 2.695359 GACGTTGTCAGCCTGGAATAA 58.305 47.619 0.00 0.00 32.09 1.40
166 167 3.071479 GACGTTGTCAGCCTGGAATAAA 58.929 45.455 0.00 0.00 32.09 1.40
167 168 3.686016 ACGTTGTCAGCCTGGAATAAAT 58.314 40.909 0.00 0.00 0.00 1.40
168 169 4.079253 ACGTTGTCAGCCTGGAATAAATT 58.921 39.130 0.00 0.00 0.00 1.82
169 170 4.156008 ACGTTGTCAGCCTGGAATAAATTC 59.844 41.667 0.00 0.00 36.08 2.17
170 171 4.396166 CGTTGTCAGCCTGGAATAAATTCT 59.604 41.667 0.00 0.00 37.00 2.40
171 172 5.447818 CGTTGTCAGCCTGGAATAAATTCTC 60.448 44.000 0.00 0.00 37.00 2.87
172 173 4.526970 TGTCAGCCTGGAATAAATTCTCC 58.473 43.478 0.00 0.00 37.00 3.71
173 174 3.885901 GTCAGCCTGGAATAAATTCTCCC 59.114 47.826 0.00 0.00 37.00 4.30
174 175 3.788142 TCAGCCTGGAATAAATTCTCCCT 59.212 43.478 0.00 0.00 37.00 4.20
175 176 4.975147 TCAGCCTGGAATAAATTCTCCCTA 59.025 41.667 0.00 0.00 37.00 3.53
176 177 5.066593 CAGCCTGGAATAAATTCTCCCTAC 58.933 45.833 0.00 0.00 37.00 3.18
177 178 4.978388 AGCCTGGAATAAATTCTCCCTACT 59.022 41.667 0.00 0.00 37.00 2.57
178 179 5.433381 AGCCTGGAATAAATTCTCCCTACTT 59.567 40.000 0.00 0.00 37.00 2.24
179 180 5.765677 GCCTGGAATAAATTCTCCCTACTTC 59.234 44.000 0.00 0.00 37.00 3.01
180 181 5.992217 CCTGGAATAAATTCTCCCTACTTCG 59.008 44.000 2.91 0.00 37.00 3.79
181 182 6.408206 CCTGGAATAAATTCTCCCTACTTCGT 60.408 42.308 2.91 0.00 37.00 3.85
182 183 6.579865 TGGAATAAATTCTCCCTACTTCGTC 58.420 40.000 2.91 0.00 37.00 4.20
183 184 6.383147 TGGAATAAATTCTCCCTACTTCGTCT 59.617 38.462 2.91 0.00 37.00 4.18
184 185 7.093024 TGGAATAAATTCTCCCTACTTCGTCTT 60.093 37.037 2.91 0.00 37.00 3.01
185 186 7.769507 GGAATAAATTCTCCCTACTTCGTCTTT 59.230 37.037 2.91 0.00 37.00 2.52
186 187 8.494016 AATAAATTCTCCCTACTTCGTCTTTG 57.506 34.615 0.00 0.00 0.00 2.77
187 188 5.485209 AATTCTCCCTACTTCGTCTTTGT 57.515 39.130 0.00 0.00 0.00 2.83
188 189 6.600882 AATTCTCCCTACTTCGTCTTTGTA 57.399 37.500 0.00 0.00 0.00 2.41
189 190 5.382618 TTCTCCCTACTTCGTCTTTGTAC 57.617 43.478 0.00 0.00 0.00 2.90
190 191 4.660168 TCTCCCTACTTCGTCTTTGTACT 58.340 43.478 0.00 0.00 0.00 2.73
191 192 4.458295 TCTCCCTACTTCGTCTTTGTACTG 59.542 45.833 0.00 0.00 0.00 2.74
192 193 3.508793 TCCCTACTTCGTCTTTGTACTGG 59.491 47.826 0.00 0.00 0.00 4.00
193 194 3.257624 CCCTACTTCGTCTTTGTACTGGT 59.742 47.826 0.00 0.00 0.00 4.00
194 195 4.235360 CCTACTTCGTCTTTGTACTGGTG 58.765 47.826 0.00 0.00 0.00 4.17
195 196 3.107642 ACTTCGTCTTTGTACTGGTGG 57.892 47.619 0.00 0.00 0.00 4.61
196 197 2.433239 ACTTCGTCTTTGTACTGGTGGT 59.567 45.455 0.00 0.00 0.00 4.16
197 198 2.519377 TCGTCTTTGTACTGGTGGTG 57.481 50.000 0.00 0.00 0.00 4.17
198 199 0.865769 CGTCTTTGTACTGGTGGTGC 59.134 55.000 0.00 0.00 0.00 5.01
199 200 1.540363 CGTCTTTGTACTGGTGGTGCT 60.540 52.381 0.00 0.00 0.00 4.40
200 201 2.572290 GTCTTTGTACTGGTGGTGCTT 58.428 47.619 0.00 0.00 0.00 3.91
201 202 2.949644 GTCTTTGTACTGGTGGTGCTTT 59.050 45.455 0.00 0.00 0.00 3.51
202 203 2.948979 TCTTTGTACTGGTGGTGCTTTG 59.051 45.455 0.00 0.00 0.00 2.77
203 204 2.428544 TTGTACTGGTGGTGCTTTGT 57.571 45.000 0.00 0.00 0.00 2.83
204 205 3.562343 TTGTACTGGTGGTGCTTTGTA 57.438 42.857 0.00 0.00 0.00 2.41
205 206 3.780804 TGTACTGGTGGTGCTTTGTAT 57.219 42.857 0.00 0.00 0.00 2.29
206 207 4.093472 TGTACTGGTGGTGCTTTGTATT 57.907 40.909 0.00 0.00 0.00 1.89
207 208 3.818210 TGTACTGGTGGTGCTTTGTATTG 59.182 43.478 0.00 0.00 0.00 1.90
208 209 2.944129 ACTGGTGGTGCTTTGTATTGT 58.056 42.857 0.00 0.00 0.00 2.71
209 210 2.884639 ACTGGTGGTGCTTTGTATTGTC 59.115 45.455 0.00 0.00 0.00 3.18
210 211 2.884012 CTGGTGGTGCTTTGTATTGTCA 59.116 45.455 0.00 0.00 0.00 3.58
211 212 2.884012 TGGTGGTGCTTTGTATTGTCAG 59.116 45.455 0.00 0.00 0.00 3.51
212 213 3.146066 GGTGGTGCTTTGTATTGTCAGA 58.854 45.455 0.00 0.00 0.00 3.27
213 214 3.568007 GGTGGTGCTTTGTATTGTCAGAA 59.432 43.478 0.00 0.00 0.00 3.02
214 215 4.320494 GGTGGTGCTTTGTATTGTCAGAAG 60.320 45.833 0.00 0.00 0.00 2.85
215 216 3.820467 TGGTGCTTTGTATTGTCAGAAGG 59.180 43.478 0.00 0.00 0.00 3.46
216 217 3.366374 GGTGCTTTGTATTGTCAGAAGGC 60.366 47.826 0.00 0.00 0.00 4.35
217 218 2.483877 TGCTTTGTATTGTCAGAAGGCG 59.516 45.455 0.00 0.00 0.00 5.52
218 219 2.484264 GCTTTGTATTGTCAGAAGGCGT 59.516 45.455 0.00 0.00 0.00 5.68
219 220 3.667960 GCTTTGTATTGTCAGAAGGCGTG 60.668 47.826 0.00 0.00 0.00 5.34
220 221 1.438651 TGTATTGTCAGAAGGCGTGC 58.561 50.000 0.00 0.00 0.00 5.34
221 222 0.370273 GTATTGTCAGAAGGCGTGCG 59.630 55.000 0.00 0.00 0.00 5.34
222 223 0.245266 TATTGTCAGAAGGCGTGCGA 59.755 50.000 0.00 0.00 0.00 5.10
223 224 0.602638 ATTGTCAGAAGGCGTGCGAA 60.603 50.000 0.00 0.00 0.00 4.70
224 225 1.221466 TTGTCAGAAGGCGTGCGAAG 61.221 55.000 0.00 0.00 0.00 3.79
225 226 2.048222 TCAGAAGGCGTGCGAAGG 60.048 61.111 0.00 0.00 0.00 3.46
226 227 2.048222 CAGAAGGCGTGCGAAGGA 60.048 61.111 0.00 0.00 0.00 3.36
227 228 1.667830 CAGAAGGCGTGCGAAGGAA 60.668 57.895 0.00 0.00 0.00 3.36
228 229 1.374758 AGAAGGCGTGCGAAGGAAG 60.375 57.895 0.00 0.00 0.00 3.46
229 230 1.668151 GAAGGCGTGCGAAGGAAGT 60.668 57.895 0.00 0.00 0.00 3.01
230 231 1.227853 AAGGCGTGCGAAGGAAGTT 60.228 52.632 0.00 0.00 0.00 2.66
231 232 1.507141 AAGGCGTGCGAAGGAAGTTG 61.507 55.000 0.00 0.00 0.00 3.16
232 233 2.251642 GGCGTGCGAAGGAAGTTGT 61.252 57.895 0.00 0.00 0.00 3.32
233 234 1.204312 GCGTGCGAAGGAAGTTGTC 59.796 57.895 0.00 0.00 0.00 3.18
244 245 3.409026 GGAAGTTGTCCTCACAGATGT 57.591 47.619 0.00 0.00 43.98 3.06
245 246 3.070018 GGAAGTTGTCCTCACAGATGTG 58.930 50.000 6.63 6.63 43.98 3.21
246 247 2.847327 AGTTGTCCTCACAGATGTGG 57.153 50.000 12.77 4.18 45.65 4.17
247 248 2.050144 AGTTGTCCTCACAGATGTGGT 58.950 47.619 12.77 0.00 45.65 4.16
248 249 2.146342 GTTGTCCTCACAGATGTGGTG 58.854 52.381 12.77 6.53 45.65 4.17
249 250 0.035317 TGTCCTCACAGATGTGGTGC 59.965 55.000 12.77 2.82 45.65 5.01
250 251 0.322975 GTCCTCACAGATGTGGTGCT 59.677 55.000 12.77 0.00 45.65 4.40
251 252 0.610174 TCCTCACAGATGTGGTGCTC 59.390 55.000 12.77 0.00 45.65 4.26
252 253 0.738762 CCTCACAGATGTGGTGCTCG 60.739 60.000 12.77 0.00 45.65 5.03
253 254 0.738762 CTCACAGATGTGGTGCTCGG 60.739 60.000 12.77 0.00 45.65 4.63
254 255 1.004560 CACAGATGTGGTGCTCGGT 60.005 57.895 5.02 0.00 42.10 4.69
255 256 1.004560 ACAGATGTGGTGCTCGGTG 60.005 57.895 0.00 0.00 0.00 4.94
256 257 1.742880 CAGATGTGGTGCTCGGTGG 60.743 63.158 0.00 0.00 0.00 4.61
257 258 1.913262 AGATGTGGTGCTCGGTGGA 60.913 57.895 0.00 0.00 0.00 4.02
258 259 1.221840 GATGTGGTGCTCGGTGGAT 59.778 57.895 0.00 0.00 0.00 3.41
259 260 1.078214 ATGTGGTGCTCGGTGGATG 60.078 57.895 0.00 0.00 0.00 3.51
260 261 2.436646 GTGGTGCTCGGTGGATGG 60.437 66.667 0.00 0.00 0.00 3.51
261 262 4.408821 TGGTGCTCGGTGGATGGC 62.409 66.667 0.00 0.00 0.00 4.40
281 282 0.040336 GGCGCTTCATCGTCGAGATA 60.040 55.000 7.64 0.00 37.52 1.98
301 302 1.048601 GTCTTATGGGCTCCGATCCA 58.951 55.000 0.00 0.00 37.46 3.41
310 311 0.959553 GCTCCGATCCACCTCGAATA 59.040 55.000 0.00 0.00 41.12 1.75
314 315 1.334779 CCGATCCACCTCGAATACGTC 60.335 57.143 0.00 0.00 41.12 4.34
383 385 1.592400 GGAACGGCAAGGTTAAGGCC 61.592 60.000 0.00 0.00 44.27 5.19
390 392 0.250513 CAAGGTTAAGGCCTCTCGCT 59.749 55.000 5.23 0.00 38.03 4.93
421 424 6.068010 ACACAATAGGAATTCTGGTGTCAAA 58.932 36.000 5.23 0.00 34.06 2.69
454 457 5.175127 TCGATTCGAAGGTTCAATGATGAA 58.825 37.500 6.24 0.00 36.69 2.57
455 458 5.291858 TCGATTCGAAGGTTCAATGATGAAG 59.708 40.000 6.24 0.00 38.43 3.02
489 493 2.487428 CTGGTCTCTCGGAGCACG 59.513 66.667 0.00 0.00 45.96 5.34
494 498 2.807045 CTCTCGGAGCACGTGCAC 60.807 66.667 39.21 33.13 45.16 4.57
497 501 4.994201 TCGGAGCACGTGCACGAC 62.994 66.667 38.41 31.99 43.76 4.34
513 517 1.660355 GACGAGTGCCTGACTGTCA 59.340 57.895 10.50 10.50 33.83 3.58
522 526 1.337260 GCCTGACTGTCATCGACAAGT 60.337 52.381 11.45 0.00 42.26 3.16
524 528 3.393800 CCTGACTGTCATCGACAAGTTT 58.606 45.455 11.45 0.00 42.26 2.66
526 530 4.051237 CTGACTGTCATCGACAAGTTTCA 58.949 43.478 11.45 0.00 42.26 2.69
527 531 3.802139 TGACTGTCATCGACAAGTTTCAC 59.198 43.478 6.36 0.00 42.26 3.18
538 542 2.814919 ACAAGTTTCACCAACAACGACA 59.185 40.909 0.00 0.00 37.93 4.35
540 544 2.428491 AGTTTCACCAACAACGACACA 58.572 42.857 0.00 0.00 37.93 3.72
546 550 2.547634 CACCAACAACGACACATCATCA 59.452 45.455 0.00 0.00 0.00 3.07
567 571 0.738975 CTCGTTCTGATGGCGGTAGA 59.261 55.000 0.00 0.00 0.00 2.59
577 581 2.401766 GGCGGTAGAGGTCGTTCGA 61.402 63.158 0.00 0.00 0.00 3.71
579 583 0.591741 GCGGTAGAGGTCGTTCGATG 60.592 60.000 0.00 0.00 0.00 3.84
604 608 4.816385 TGTAGGGATCTCGATGCAATTTTC 59.184 41.667 0.00 0.00 0.00 2.29
606 610 4.467769 AGGGATCTCGATGCAATTTTCAT 58.532 39.130 0.00 0.00 0.00 2.57
626 630 5.722263 TCATTATGTTTGGGATGCTTTGTG 58.278 37.500 0.00 0.00 0.00 3.33
636 640 3.629398 GGGATGCTTTGTGGATTCTGTAG 59.371 47.826 0.00 0.00 0.00 2.74
638 642 4.943705 GGATGCTTTGTGGATTCTGTAGAA 59.056 41.667 0.00 0.00 38.56 2.10
706 719 6.145534 TGCCGATAGAAAAGATATTTACAGCG 59.854 38.462 0.00 0.00 39.76 5.18
727 740 1.134310 TGGATACGGCGAGTGACTAGA 60.134 52.381 16.62 0.00 42.51 2.43
738 751 1.819288 AGTGACTAGACCGGACACATG 59.181 52.381 9.46 0.00 34.47 3.21
744 757 1.006571 GACCGGACACATGACACGT 60.007 57.895 9.46 0.00 0.00 4.49
789 802 4.012895 GCACACACGGCCAAGACG 62.013 66.667 2.24 0.00 41.40 4.18
963 995 2.650602 GAGAAGAGCGAGCGAGCG 60.651 66.667 0.00 0.00 43.00 5.03
1073 1105 1.334384 GCCTCCTCCTTGTCCTCCTC 61.334 65.000 0.00 0.00 0.00 3.71
1074 1106 0.041833 CCTCCTCCTTGTCCTCCTCA 59.958 60.000 0.00 0.00 0.00 3.86
1075 1107 1.343884 CCTCCTCCTTGTCCTCCTCAT 60.344 57.143 0.00 0.00 0.00 2.90
1162 1194 3.626924 AGCGCCGGGTCAAGAACT 61.627 61.111 2.29 0.00 0.00 3.01
1166 1198 2.359975 CCGGGTCAAGAACTGCCC 60.360 66.667 0.00 0.00 37.77 5.36
1168 1200 2.359975 GGGTCAAGAACTGCCCGG 60.360 66.667 0.00 0.00 33.44 5.73
1169 1201 2.747686 GGTCAAGAACTGCCCGGA 59.252 61.111 0.73 0.00 0.00 5.14
1170 1202 1.376037 GGTCAAGAACTGCCCGGAG 60.376 63.158 0.73 0.00 0.00 4.63
1486 1524 0.951040 GTTCTTGGACGAGCACCAGG 60.951 60.000 0.00 0.00 38.70 4.45
1610 1649 4.494855 GCTCAAATTGCTCGACCTATGTTC 60.495 45.833 0.00 0.00 0.00 3.18
1666 1705 4.149922 GTCTGTTCGTTCAACATCGATTCA 59.850 41.667 0.00 0.00 44.32 2.57
1746 1797 0.819582 ATTTCCGCTTCATGCTTGGG 59.180 50.000 0.00 0.00 40.11 4.12
1749 1800 0.326595 TCCGCTTCATGCTTGGGTTA 59.673 50.000 0.00 0.00 40.11 2.85
1755 1806 3.181483 GCTTCATGCTTGGGTTAGATTGG 60.181 47.826 0.00 0.00 38.95 3.16
1756 1807 3.017048 TCATGCTTGGGTTAGATTGGG 57.983 47.619 0.00 0.00 0.00 4.12
1786 1846 4.923893 TGAGCATTTGAACTCAAGTGTTG 58.076 39.130 14.20 4.09 43.01 3.33
1911 1975 0.385473 CAACCGCACCGTCAATCAAC 60.385 55.000 0.00 0.00 0.00 3.18
1913 1977 1.963855 CCGCACCGTCAATCAACCA 60.964 57.895 0.00 0.00 0.00 3.67
2018 2082 2.203056 CCATCTGCCCGAATCGCA 60.203 61.111 0.00 0.00 34.41 5.10
2026 2090 0.040067 GCCCGAATCGCATGGAAATC 60.040 55.000 0.00 0.00 0.00 2.17
2038 2102 4.741185 CGCATGGAAATCACATTACATTGG 59.259 41.667 0.00 0.00 0.00 3.16
2057 2121 3.553904 TGGATCAATTCATCGCCATCAA 58.446 40.909 0.00 0.00 0.00 2.57
2070 2134 1.511850 CCATCAACACGACAAGCAGA 58.488 50.000 0.00 0.00 0.00 4.26
2072 2136 2.349817 CCATCAACACGACAAGCAGAAC 60.350 50.000 0.00 0.00 0.00 3.01
2096 2163 2.158827 AGGGTGCACGCATCATATTGTA 60.159 45.455 32.29 0.00 0.00 2.41
2115 2182 4.514577 ACTTGGGATCGCGCCTCG 62.515 66.667 0.00 0.00 40.15 4.63
2157 2224 1.380403 CGAGCGAGGAGGATGTCACT 61.380 60.000 0.00 0.00 0.00 3.41
2160 2227 1.819229 CGAGGAGGATGTCACTGGG 59.181 63.158 0.00 0.00 0.00 4.45
2184 2251 1.713597 TCTAATGCTGCACTCACACG 58.286 50.000 3.57 0.00 0.00 4.49
2201 2271 7.789302 CACTCACACGTTATGATTTATGAATCG 59.211 37.037 5.81 0.00 43.75 3.34
2224 2294 4.749245 TGAATTTCCGTTCAGAAGAAGC 57.251 40.909 0.00 0.00 33.41 3.86
2225 2295 3.186409 TGAATTTCCGTTCAGAAGAAGCG 59.814 43.478 0.00 0.00 33.41 4.68
2226 2296 1.508632 TTTCCGTTCAGAAGAAGCGG 58.491 50.000 3.96 3.96 43.48 5.52
2227 2297 0.391597 TTCCGTTCAGAAGAAGCGGT 59.608 50.000 9.17 0.00 43.07 5.68
2237 2307 6.222038 TCAGAAGAAGCGGTACTATGAATT 57.778 37.500 0.00 0.00 0.00 2.17
2245 2315 5.223382 AGCGGTACTATGAATTCTTGATCG 58.777 41.667 7.05 4.42 0.00 3.69
2350 2640 0.108396 TGCTGAGCTGTGCCTTTGTA 59.892 50.000 5.83 0.00 0.00 2.41
2517 2810 8.903570 AATCATCACGCGATTGTTTTATTTAA 57.096 26.923 15.93 0.00 31.90 1.52
2518 2811 8.903570 ATCATCACGCGATTGTTTTATTTAAA 57.096 26.923 15.93 0.00 0.00 1.52
2527 2820 9.134734 GCGATTGTTTTATTTAAATGTGGAAGA 57.865 29.630 11.05 0.00 0.00 2.87
2563 2856 1.134551 GGTTCTGACCTGAGATCTGGC 60.135 57.143 0.00 0.00 42.99 4.85
2657 2950 6.985653 AATTCTGCAGCTAGATTCCTACTA 57.014 37.500 9.47 0.00 0.00 1.82
2682 2975 5.968528 ACGACTAGTCTGTTCAGATCTTT 57.031 39.130 20.34 0.00 0.00 2.52
2780 3073 4.562347 CCAGCATATTCCAGAGTATTCGCT 60.562 45.833 0.00 0.00 0.00 4.93
2785 3078 0.952280 TCCAGAGTATTCGCTAGCCG 59.048 55.000 9.66 4.62 38.61 5.52
2798 3092 1.742411 GCTAGCCGTGCACCATAGAAA 60.742 52.381 12.15 0.00 0.00 2.52
2799 3093 2.205074 CTAGCCGTGCACCATAGAAAG 58.795 52.381 12.15 0.00 0.00 2.62
2800 3094 0.392998 AGCCGTGCACCATAGAAAGG 60.393 55.000 12.15 4.96 0.00 3.11
2801 3095 0.676782 GCCGTGCACCATAGAAAGGT 60.677 55.000 12.15 0.00 40.85 3.50
2802 3096 1.821216 CCGTGCACCATAGAAAGGTT 58.179 50.000 12.15 0.00 37.23 3.50
2803 3097 2.159382 CCGTGCACCATAGAAAGGTTT 58.841 47.619 12.15 0.00 37.23 3.27
2804 3098 2.556622 CCGTGCACCATAGAAAGGTTTT 59.443 45.455 12.15 0.00 37.23 2.43
2805 3099 3.005367 CCGTGCACCATAGAAAGGTTTTT 59.995 43.478 12.15 0.00 37.23 1.94
2806 3100 4.226761 CGTGCACCATAGAAAGGTTTTTC 58.773 43.478 12.15 0.00 42.44 2.29
2819 3113 7.660735 GAAAGGTTTTTCTTTCTGTACGTTC 57.339 36.000 0.00 0.00 45.38 3.95
2820 3114 5.399604 AGGTTTTTCTTTCTGTACGTTCG 57.600 39.130 0.00 0.00 0.00 3.95
2821 3115 4.271776 AGGTTTTTCTTTCTGTACGTTCGG 59.728 41.667 0.00 0.00 0.00 4.30
2822 3116 4.521010 GTTTTTCTTTCTGTACGTTCGGG 58.479 43.478 0.00 0.00 0.00 5.14
2823 3117 3.731652 TTTCTTTCTGTACGTTCGGGA 57.268 42.857 0.00 0.00 0.00 5.14
2824 3118 3.293311 TTCTTTCTGTACGTTCGGGAG 57.707 47.619 0.00 0.00 0.00 4.30
2825 3119 2.233271 TCTTTCTGTACGTTCGGGAGT 58.767 47.619 0.00 0.00 0.00 3.85
2826 3120 2.624838 TCTTTCTGTACGTTCGGGAGTT 59.375 45.455 0.00 0.00 0.00 3.01
2827 3121 3.820467 TCTTTCTGTACGTTCGGGAGTTA 59.180 43.478 0.00 0.00 0.00 2.24
2828 3122 4.278170 TCTTTCTGTACGTTCGGGAGTTAA 59.722 41.667 0.00 0.00 0.00 2.01
2829 3123 3.837213 TCTGTACGTTCGGGAGTTAAG 57.163 47.619 0.00 0.00 0.00 1.85
2830 3124 2.095059 TCTGTACGTTCGGGAGTTAAGC 60.095 50.000 0.00 0.00 0.00 3.09
2831 3125 1.612950 TGTACGTTCGGGAGTTAAGCA 59.387 47.619 0.00 0.00 0.00 3.91
2832 3126 2.231964 TGTACGTTCGGGAGTTAAGCAT 59.768 45.455 0.00 0.00 0.00 3.79
2833 3127 1.722011 ACGTTCGGGAGTTAAGCATG 58.278 50.000 0.00 0.00 0.00 4.06
2834 3128 1.006832 CGTTCGGGAGTTAAGCATGG 58.993 55.000 0.00 0.00 0.00 3.66
2835 3129 0.733150 GTTCGGGAGTTAAGCATGGC 59.267 55.000 0.00 0.00 0.00 4.40
2836 3130 0.326595 TTCGGGAGTTAAGCATGGCA 59.673 50.000 0.00 0.00 0.00 4.92
2837 3131 0.326595 TCGGGAGTTAAGCATGGCAA 59.673 50.000 0.00 0.00 0.00 4.52
2838 3132 0.451783 CGGGAGTTAAGCATGGCAAC 59.548 55.000 0.00 0.00 0.00 4.17
2839 3133 0.817654 GGGAGTTAAGCATGGCAACC 59.182 55.000 0.00 0.00 0.00 3.77
2840 3134 0.817654 GGAGTTAAGCATGGCAACCC 59.182 55.000 0.00 0.00 0.00 4.11
2841 3135 0.451783 GAGTTAAGCATGGCAACCCG 59.548 55.000 0.00 0.00 0.00 5.28
2842 3136 0.037590 AGTTAAGCATGGCAACCCGA 59.962 50.000 0.00 0.00 0.00 5.14
2843 3137 0.885196 GTTAAGCATGGCAACCCGAA 59.115 50.000 0.00 0.00 0.00 4.30
2844 3138 0.885196 TTAAGCATGGCAACCCGAAC 59.115 50.000 0.00 0.00 0.00 3.95
2845 3139 1.302383 TAAGCATGGCAACCCGAACG 61.302 55.000 0.00 0.00 0.00 3.95
2846 3140 4.114997 GCATGGCAACCCGAACGG 62.115 66.667 6.25 6.25 37.81 4.44
2857 3151 3.846955 CCGAACGGGTTTAGATGGT 57.153 52.632 5.25 0.00 0.00 3.55
2858 3152 2.965572 CCGAACGGGTTTAGATGGTA 57.034 50.000 5.25 0.00 0.00 3.25
2859 3153 3.249986 CCGAACGGGTTTAGATGGTAA 57.750 47.619 5.25 0.00 0.00 2.85
2860 3154 3.192466 CCGAACGGGTTTAGATGGTAAG 58.808 50.000 5.25 0.00 0.00 2.34
2861 3155 3.368739 CCGAACGGGTTTAGATGGTAAGT 60.369 47.826 5.25 0.00 0.00 2.24
2862 3156 4.248058 CGAACGGGTTTAGATGGTAAGTT 58.752 43.478 0.00 0.00 0.00 2.66
2863 3157 4.692155 CGAACGGGTTTAGATGGTAAGTTT 59.308 41.667 0.00 0.00 0.00 2.66
2864 3158 5.868801 CGAACGGGTTTAGATGGTAAGTTTA 59.131 40.000 0.00 0.00 0.00 2.01
2865 3159 6.035327 CGAACGGGTTTAGATGGTAAGTTTAG 59.965 42.308 0.00 0.00 0.00 1.85
2866 3160 6.364568 ACGGGTTTAGATGGTAAGTTTAGT 57.635 37.500 0.00 0.00 0.00 2.24
2867 3161 6.168389 ACGGGTTTAGATGGTAAGTTTAGTG 58.832 40.000 0.00 0.00 0.00 2.74
2868 3162 6.168389 CGGGTTTAGATGGTAAGTTTAGTGT 58.832 40.000 0.00 0.00 0.00 3.55
2869 3163 6.091713 CGGGTTTAGATGGTAAGTTTAGTGTG 59.908 42.308 0.00 0.00 0.00 3.82
2870 3164 6.128090 GGGTTTAGATGGTAAGTTTAGTGTGC 60.128 42.308 0.00 0.00 0.00 4.57
2871 3165 6.401796 GGTTTAGATGGTAAGTTTAGTGTGCG 60.402 42.308 0.00 0.00 0.00 5.34
2872 3166 3.000727 AGATGGTAAGTTTAGTGTGCGC 58.999 45.455 0.00 0.00 0.00 6.09
2873 3167 1.141645 TGGTAAGTTTAGTGTGCGCG 58.858 50.000 0.00 0.00 0.00 6.86
2874 3168 1.269673 TGGTAAGTTTAGTGTGCGCGA 60.270 47.619 12.10 0.00 0.00 5.87
2875 3169 1.389106 GGTAAGTTTAGTGTGCGCGAG 59.611 52.381 12.10 0.00 0.00 5.03
2876 3170 2.322161 GTAAGTTTAGTGTGCGCGAGA 58.678 47.619 12.10 0.00 0.00 4.04
2877 3171 2.080286 AAGTTTAGTGTGCGCGAGAT 57.920 45.000 12.10 0.00 0.00 2.75
2878 3172 2.080286 AGTTTAGTGTGCGCGAGATT 57.920 45.000 12.10 0.00 0.00 2.40
2879 3173 3.226346 AGTTTAGTGTGCGCGAGATTA 57.774 42.857 12.10 0.00 0.00 1.75
2880 3174 3.179830 AGTTTAGTGTGCGCGAGATTAG 58.820 45.455 12.10 0.00 0.00 1.73
2881 3175 3.119602 AGTTTAGTGTGCGCGAGATTAGA 60.120 43.478 12.10 0.00 0.00 2.10
2882 3176 2.757686 TAGTGTGCGCGAGATTAGAG 57.242 50.000 12.10 0.00 0.00 2.43
2883 3177 1.095600 AGTGTGCGCGAGATTAGAGA 58.904 50.000 12.10 0.00 0.00 3.10
2884 3178 1.472878 AGTGTGCGCGAGATTAGAGAA 59.527 47.619 12.10 0.00 0.00 2.87
2885 3179 2.094700 AGTGTGCGCGAGATTAGAGAAA 60.095 45.455 12.10 0.00 0.00 2.52
2886 3180 2.028165 GTGTGCGCGAGATTAGAGAAAC 59.972 50.000 12.10 0.00 0.00 2.78
2887 3181 2.259618 GTGCGCGAGATTAGAGAAACA 58.740 47.619 12.10 0.00 0.00 2.83
2888 3182 2.860735 GTGCGCGAGATTAGAGAAACAT 59.139 45.455 12.10 0.00 0.00 2.71
2889 3183 2.860136 TGCGCGAGATTAGAGAAACATG 59.140 45.455 12.10 0.00 0.00 3.21
2890 3184 2.219674 GCGCGAGATTAGAGAAACATGG 59.780 50.000 12.10 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.140814 GATGGCGGCTTGGGGAAC 61.141 66.667 11.43 0.00 0.00 3.62
15 16 4.794648 CGATGGCGGCTTGGGGAA 62.795 66.667 11.43 0.00 0.00 3.97
37 38 0.036448 CCATCCTCCTGCTGCCATAG 59.964 60.000 0.00 0.00 0.00 2.23
38 39 1.421346 CCCATCCTCCTGCTGCCATA 61.421 60.000 0.00 0.00 0.00 2.74
39 40 2.764737 CCCATCCTCCTGCTGCCAT 61.765 63.158 0.00 0.00 0.00 4.40
40 41 3.414193 CCCATCCTCCTGCTGCCA 61.414 66.667 0.00 0.00 0.00 4.92
41 42 4.201122 CCCCATCCTCCTGCTGCC 62.201 72.222 0.00 0.00 0.00 4.85
42 43 4.201122 CCCCCATCCTCCTGCTGC 62.201 72.222 0.00 0.00 0.00 5.25
43 44 2.002977 TTCCCCCATCCTCCTGCTG 61.003 63.158 0.00 0.00 0.00 4.41
44 45 2.003548 GTTCCCCCATCCTCCTGCT 61.004 63.158 0.00 0.00 0.00 4.24
45 46 2.597903 GTTCCCCCATCCTCCTGC 59.402 66.667 0.00 0.00 0.00 4.85
46 47 3.335711 GGTTCCCCCATCCTCCTG 58.664 66.667 0.00 0.00 0.00 3.86
56 57 0.402121 GCTCATATCCAGGGTTCCCC 59.598 60.000 4.02 0.00 45.90 4.81
57 58 0.035458 CGCTCATATCCAGGGTTCCC 59.965 60.000 0.00 0.00 0.00 3.97
58 59 0.759346 ACGCTCATATCCAGGGTTCC 59.241 55.000 0.00 0.00 33.45 3.62
59 60 2.614057 CAAACGCTCATATCCAGGGTTC 59.386 50.000 11.91 0.00 43.98 3.62
60 61 2.643551 CAAACGCTCATATCCAGGGTT 58.356 47.619 7.50 7.50 46.01 4.11
61 62 1.134098 CCAAACGCTCATATCCAGGGT 60.134 52.381 0.00 0.00 38.62 4.34
62 63 1.140852 TCCAAACGCTCATATCCAGGG 59.859 52.381 0.00 0.00 0.00 4.45
63 64 2.620251 TCCAAACGCTCATATCCAGG 57.380 50.000 0.00 0.00 0.00 4.45
64 65 4.336433 ACAAATCCAAACGCTCATATCCAG 59.664 41.667 0.00 0.00 0.00 3.86
65 66 4.096231 CACAAATCCAAACGCTCATATCCA 59.904 41.667 0.00 0.00 0.00 3.41
66 67 4.498009 CCACAAATCCAAACGCTCATATCC 60.498 45.833 0.00 0.00 0.00 2.59
67 68 4.096382 ACCACAAATCCAAACGCTCATATC 59.904 41.667 0.00 0.00 0.00 1.63
68 69 4.016444 ACCACAAATCCAAACGCTCATAT 58.984 39.130 0.00 0.00 0.00 1.78
69 70 3.190327 CACCACAAATCCAAACGCTCATA 59.810 43.478 0.00 0.00 0.00 2.15
70 71 2.030007 CACCACAAATCCAAACGCTCAT 60.030 45.455 0.00 0.00 0.00 2.90
71 72 1.336440 CACCACAAATCCAAACGCTCA 59.664 47.619 0.00 0.00 0.00 4.26
72 73 1.335872 CCACCACAAATCCAAACGCTC 60.336 52.381 0.00 0.00 0.00 5.03
73 74 0.673437 CCACCACAAATCCAAACGCT 59.327 50.000 0.00 0.00 0.00 5.07
74 75 0.671251 TCCACCACAAATCCAAACGC 59.329 50.000 0.00 0.00 0.00 4.84
75 76 1.269448 CCTCCACCACAAATCCAAACG 59.731 52.381 0.00 0.00 0.00 3.60
76 77 2.316108 ACCTCCACCACAAATCCAAAC 58.684 47.619 0.00 0.00 0.00 2.93
77 78 2.765689 ACCTCCACCACAAATCCAAA 57.234 45.000 0.00 0.00 0.00 3.28
78 79 2.041081 CCTACCTCCACCACAAATCCAA 59.959 50.000 0.00 0.00 0.00 3.53
79 80 1.633432 CCTACCTCCACCACAAATCCA 59.367 52.381 0.00 0.00 0.00 3.41
80 81 1.913419 TCCTACCTCCACCACAAATCC 59.087 52.381 0.00 0.00 0.00 3.01
81 82 3.933861 ATCCTACCTCCACCACAAATC 57.066 47.619 0.00 0.00 0.00 2.17
82 83 4.371681 ACTATCCTACCTCCACCACAAAT 58.628 43.478 0.00 0.00 0.00 2.32
83 84 3.798515 ACTATCCTACCTCCACCACAAA 58.201 45.455 0.00 0.00 0.00 2.83
84 85 3.484953 ACTATCCTACCTCCACCACAA 57.515 47.619 0.00 0.00 0.00 3.33
85 86 3.530564 ACTACTATCCTACCTCCACCACA 59.469 47.826 0.00 0.00 0.00 4.17
86 87 4.181799 ACTACTATCCTACCTCCACCAC 57.818 50.000 0.00 0.00 0.00 4.16
87 88 4.353191 CCTACTACTATCCTACCTCCACCA 59.647 50.000 0.00 0.00 0.00 4.17
88 89 4.353489 ACCTACTACTATCCTACCTCCACC 59.647 50.000 0.00 0.00 0.00 4.61
89 90 5.581350 ACCTACTACTATCCTACCTCCAC 57.419 47.826 0.00 0.00 0.00 4.02
90 91 6.603110 AAACCTACTACTATCCTACCTCCA 57.397 41.667 0.00 0.00 0.00 3.86
91 92 7.911130 AAAAACCTACTACTATCCTACCTCC 57.089 40.000 0.00 0.00 0.00 4.30
112 113 2.490115 ACCGCTGTCAGTTGAACAAAAA 59.510 40.909 0.93 0.00 0.00 1.94
113 114 2.088423 ACCGCTGTCAGTTGAACAAAA 58.912 42.857 0.93 0.00 0.00 2.44
114 115 1.400142 CACCGCTGTCAGTTGAACAAA 59.600 47.619 0.93 0.00 0.00 2.83
115 116 1.013596 CACCGCTGTCAGTTGAACAA 58.986 50.000 0.93 0.00 0.00 2.83
116 117 0.176910 TCACCGCTGTCAGTTGAACA 59.823 50.000 0.93 0.00 0.00 3.18
117 118 0.861837 CTCACCGCTGTCAGTTGAAC 59.138 55.000 0.93 0.00 0.00 3.18
118 119 0.750249 TCTCACCGCTGTCAGTTGAA 59.250 50.000 0.93 0.00 0.00 2.69
119 120 0.032130 GTCTCACCGCTGTCAGTTGA 59.968 55.000 0.93 1.75 0.00 3.18
120 121 1.278172 CGTCTCACCGCTGTCAGTTG 61.278 60.000 0.93 0.00 0.00 3.16
121 122 1.007271 CGTCTCACCGCTGTCAGTT 60.007 57.895 0.93 0.00 0.00 3.16
122 123 1.244697 ATCGTCTCACCGCTGTCAGT 61.245 55.000 0.93 0.00 0.00 3.41
123 124 0.799917 CATCGTCTCACCGCTGTCAG 60.800 60.000 0.00 0.00 0.00 3.51
124 125 1.212751 CATCGTCTCACCGCTGTCA 59.787 57.895 0.00 0.00 0.00 3.58
125 126 1.517257 CCATCGTCTCACCGCTGTC 60.517 63.158 0.00 0.00 0.00 3.51
126 127 2.573869 CCATCGTCTCACCGCTGT 59.426 61.111 0.00 0.00 0.00 4.40
127 128 2.887568 GCCATCGTCTCACCGCTG 60.888 66.667 0.00 0.00 0.00 5.18
128 129 4.498520 CGCCATCGTCTCACCGCT 62.499 66.667 0.00 0.00 0.00 5.52
129 130 4.492160 TCGCCATCGTCTCACCGC 62.492 66.667 0.00 0.00 36.96 5.68
130 131 2.579787 GTCGCCATCGTCTCACCG 60.580 66.667 0.00 0.00 36.96 4.94
131 132 2.579787 CGTCGCCATCGTCTCACC 60.580 66.667 0.00 0.00 36.96 4.02
132 133 1.443872 AACGTCGCCATCGTCTCAC 60.444 57.895 0.00 0.00 40.69 3.51
133 134 1.443702 CAACGTCGCCATCGTCTCA 60.444 57.895 0.00 0.00 40.69 3.27
134 135 1.403972 GACAACGTCGCCATCGTCTC 61.404 60.000 0.00 0.00 40.69 3.36
135 136 1.443872 GACAACGTCGCCATCGTCT 60.444 57.895 0.00 0.00 40.69 4.18
136 137 1.674611 CTGACAACGTCGCCATCGTC 61.675 60.000 0.00 0.00 40.69 4.20
137 138 1.733041 CTGACAACGTCGCCATCGT 60.733 57.895 0.00 0.00 43.45 3.73
138 139 3.071459 GCTGACAACGTCGCCATCG 62.071 63.158 0.00 0.00 34.95 3.84
139 140 2.740714 GGCTGACAACGTCGCCATC 61.741 63.158 18.54 0.00 44.78 3.51
140 141 2.742372 GGCTGACAACGTCGCCAT 60.742 61.111 18.54 0.00 44.78 4.40
141 142 3.923864 AGGCTGACAACGTCGCCA 61.924 61.111 22.59 0.85 46.36 5.69
142 143 3.414700 CAGGCTGACAACGTCGCC 61.415 66.667 9.42 16.82 45.29 5.54
143 144 3.414700 CCAGGCTGACAACGTCGC 61.415 66.667 17.94 0.00 34.95 5.19
144 145 0.670546 ATTCCAGGCTGACAACGTCG 60.671 55.000 17.94 0.00 34.95 5.12
145 146 2.380084 TATTCCAGGCTGACAACGTC 57.620 50.000 17.94 0.00 0.00 4.34
146 147 2.851263 TTATTCCAGGCTGACAACGT 57.149 45.000 17.94 0.00 0.00 3.99
147 148 4.396166 AGAATTTATTCCAGGCTGACAACG 59.604 41.667 17.94 0.00 37.51 4.10
148 149 5.163612 GGAGAATTTATTCCAGGCTGACAAC 60.164 44.000 17.94 0.00 37.51 3.32
149 150 4.949856 GGAGAATTTATTCCAGGCTGACAA 59.050 41.667 17.94 8.74 37.51 3.18
150 151 4.526970 GGAGAATTTATTCCAGGCTGACA 58.473 43.478 17.94 1.46 37.51 3.58
151 152 3.885901 GGGAGAATTTATTCCAGGCTGAC 59.114 47.826 17.94 0.00 37.51 3.51
152 153 3.788142 AGGGAGAATTTATTCCAGGCTGA 59.212 43.478 17.94 0.00 37.51 4.26
153 154 4.176120 AGGGAGAATTTATTCCAGGCTG 57.824 45.455 7.75 7.75 37.51 4.85
154 155 4.978388 AGTAGGGAGAATTTATTCCAGGCT 59.022 41.667 6.84 0.00 37.51 4.58
155 156 5.311844 AGTAGGGAGAATTTATTCCAGGC 57.688 43.478 6.84 0.00 37.51 4.85
156 157 5.992217 CGAAGTAGGGAGAATTTATTCCAGG 59.008 44.000 6.84 0.00 37.51 4.45
157 158 6.583562 ACGAAGTAGGGAGAATTTATTCCAG 58.416 40.000 0.00 0.00 41.94 3.86
158 159 6.555463 ACGAAGTAGGGAGAATTTATTCCA 57.445 37.500 0.00 0.00 41.94 3.53
176 177 2.800544 CACCACCAGTACAAAGACGAAG 59.199 50.000 0.00 0.00 0.00 3.79
177 178 2.828877 CACCACCAGTACAAAGACGAA 58.171 47.619 0.00 0.00 0.00 3.85
178 179 1.539496 GCACCACCAGTACAAAGACGA 60.539 52.381 0.00 0.00 0.00 4.20
179 180 0.865769 GCACCACCAGTACAAAGACG 59.134 55.000 0.00 0.00 0.00 4.18
180 181 2.256117 AGCACCACCAGTACAAAGAC 57.744 50.000 0.00 0.00 0.00 3.01
181 182 2.948979 CAAAGCACCACCAGTACAAAGA 59.051 45.455 0.00 0.00 0.00 2.52
182 183 2.687935 ACAAAGCACCACCAGTACAAAG 59.312 45.455 0.00 0.00 0.00 2.77
183 184 2.729194 ACAAAGCACCACCAGTACAAA 58.271 42.857 0.00 0.00 0.00 2.83
184 185 2.428544 ACAAAGCACCACCAGTACAA 57.571 45.000 0.00 0.00 0.00 2.41
185 186 3.780804 ATACAAAGCACCACCAGTACA 57.219 42.857 0.00 0.00 0.00 2.90
186 187 3.818773 ACAATACAAAGCACCACCAGTAC 59.181 43.478 0.00 0.00 0.00 2.73
187 188 4.069304 GACAATACAAAGCACCACCAGTA 58.931 43.478 0.00 0.00 0.00 2.74
188 189 2.884639 GACAATACAAAGCACCACCAGT 59.115 45.455 0.00 0.00 0.00 4.00
189 190 2.884012 TGACAATACAAAGCACCACCAG 59.116 45.455 0.00 0.00 0.00 4.00
190 191 2.884012 CTGACAATACAAAGCACCACCA 59.116 45.455 0.00 0.00 0.00 4.17
191 192 3.146066 TCTGACAATACAAAGCACCACC 58.854 45.455 0.00 0.00 0.00 4.61
192 193 4.320494 CCTTCTGACAATACAAAGCACCAC 60.320 45.833 0.00 0.00 0.00 4.16
193 194 3.820467 CCTTCTGACAATACAAAGCACCA 59.180 43.478 0.00 0.00 0.00 4.17
194 195 3.366374 GCCTTCTGACAATACAAAGCACC 60.366 47.826 0.00 0.00 0.00 5.01
195 196 3.667960 CGCCTTCTGACAATACAAAGCAC 60.668 47.826 0.00 0.00 0.00 4.40
196 197 2.483877 CGCCTTCTGACAATACAAAGCA 59.516 45.455 0.00 0.00 0.00 3.91
197 198 2.484264 ACGCCTTCTGACAATACAAAGC 59.516 45.455 0.00 0.00 0.00 3.51
198 199 3.667960 GCACGCCTTCTGACAATACAAAG 60.668 47.826 0.00 0.00 0.00 2.77
199 200 2.225491 GCACGCCTTCTGACAATACAAA 59.775 45.455 0.00 0.00 0.00 2.83
200 201 1.804151 GCACGCCTTCTGACAATACAA 59.196 47.619 0.00 0.00 0.00 2.41
201 202 1.438651 GCACGCCTTCTGACAATACA 58.561 50.000 0.00 0.00 0.00 2.29
202 203 0.370273 CGCACGCCTTCTGACAATAC 59.630 55.000 0.00 0.00 0.00 1.89
203 204 0.245266 TCGCACGCCTTCTGACAATA 59.755 50.000 0.00 0.00 0.00 1.90
204 205 0.602638 TTCGCACGCCTTCTGACAAT 60.603 50.000 0.00 0.00 0.00 2.71
205 206 1.221466 CTTCGCACGCCTTCTGACAA 61.221 55.000 0.00 0.00 0.00 3.18
206 207 1.664649 CTTCGCACGCCTTCTGACA 60.665 57.895 0.00 0.00 0.00 3.58
207 208 2.383527 CCTTCGCACGCCTTCTGAC 61.384 63.158 0.00 0.00 0.00 3.51
208 209 2.048222 CCTTCGCACGCCTTCTGA 60.048 61.111 0.00 0.00 0.00 3.27
209 210 1.630244 CTTCCTTCGCACGCCTTCTG 61.630 60.000 0.00 0.00 0.00 3.02
210 211 1.374758 CTTCCTTCGCACGCCTTCT 60.375 57.895 0.00 0.00 0.00 2.85
211 212 1.228657 AACTTCCTTCGCACGCCTTC 61.229 55.000 0.00 0.00 0.00 3.46
212 213 1.227853 AACTTCCTTCGCACGCCTT 60.228 52.632 0.00 0.00 0.00 4.35
213 214 1.961277 CAACTTCCTTCGCACGCCT 60.961 57.895 0.00 0.00 0.00 5.52
214 215 2.171489 GACAACTTCCTTCGCACGCC 62.171 60.000 0.00 0.00 0.00 5.68
215 216 1.204312 GACAACTTCCTTCGCACGC 59.796 57.895 0.00 0.00 0.00 5.34
216 217 1.860078 GGACAACTTCCTTCGCACG 59.140 57.895 0.00 0.00 41.95 5.34
224 225 3.409026 ACATCTGTGAGGACAACTTCC 57.591 47.619 0.00 0.00 46.33 3.46
236 237 1.004560 ACCGAGCACCACATCTGTG 60.005 57.895 3.28 3.28 45.23 3.66
237 238 1.004560 CACCGAGCACCACATCTGT 60.005 57.895 0.00 0.00 0.00 3.41
238 239 1.742880 CCACCGAGCACCACATCTG 60.743 63.158 0.00 0.00 0.00 2.90
239 240 1.267574 ATCCACCGAGCACCACATCT 61.268 55.000 0.00 0.00 0.00 2.90
240 241 1.091771 CATCCACCGAGCACCACATC 61.092 60.000 0.00 0.00 0.00 3.06
241 242 1.078214 CATCCACCGAGCACCACAT 60.078 57.895 0.00 0.00 0.00 3.21
242 243 2.347114 CATCCACCGAGCACCACA 59.653 61.111 0.00 0.00 0.00 4.17
243 244 2.436646 CCATCCACCGAGCACCAC 60.437 66.667 0.00 0.00 0.00 4.16
244 245 4.408821 GCCATCCACCGAGCACCA 62.409 66.667 0.00 0.00 0.00 4.17
254 255 4.488136 ATGAAGCGCCGCCATCCA 62.488 61.111 4.98 0.00 0.00 3.41
255 256 3.654020 GATGAAGCGCCGCCATCC 61.654 66.667 14.83 0.00 32.68 3.51
256 257 4.005472 CGATGAAGCGCCGCCATC 62.005 66.667 15.51 15.51 34.81 3.51
257 258 4.838152 ACGATGAAGCGCCGCCAT 62.838 61.111 4.98 2.29 33.86 4.40
261 262 2.990674 ATCTCGACGATGAAGCGCCG 62.991 60.000 2.29 1.74 38.49 6.46
262 263 0.040336 TATCTCGACGATGAAGCGCC 60.040 55.000 2.29 0.00 33.48 6.53
263 264 1.322865 CTATCTCGACGATGAAGCGC 58.677 55.000 0.00 0.00 33.48 5.92
264 265 2.222213 AGACTATCTCGACGATGAAGCG 59.778 50.000 0.00 0.00 33.48 4.68
265 266 3.889196 AGACTATCTCGACGATGAAGC 57.111 47.619 0.00 0.00 33.48 3.86
266 267 6.310960 CCATAAGACTATCTCGACGATGAAG 58.689 44.000 0.00 0.00 33.48 3.02
267 268 5.181433 CCCATAAGACTATCTCGACGATGAA 59.819 44.000 0.00 0.00 33.48 2.57
268 269 4.695928 CCCATAAGACTATCTCGACGATGA 59.304 45.833 0.00 0.00 33.48 2.92
269 270 4.673061 GCCCATAAGACTATCTCGACGATG 60.673 50.000 0.00 0.00 33.48 3.84
270 271 3.440872 GCCCATAAGACTATCTCGACGAT 59.559 47.826 0.00 3.44 36.11 3.73
281 282 1.343069 GGATCGGAGCCCATAAGACT 58.657 55.000 0.00 0.00 0.00 3.24
301 302 0.666913 CCATCGGACGTATTCGAGGT 59.333 55.000 15.22 0.00 38.83 3.85
314 315 2.779636 CGTCGATTACGTCCATCGG 58.220 57.895 22.87 9.79 46.72 4.18
346 348 2.995283 TCCGAGGAGACGACAAGAATA 58.005 47.619 0.00 0.00 35.09 1.75
370 372 1.369839 GCGAGAGGCCTTAACCTTGC 61.370 60.000 6.77 11.46 41.32 4.01
390 392 5.452776 CCAGAATTCCTATTGTGTACGCCTA 60.453 44.000 3.51 0.00 34.19 3.93
404 406 3.771216 AGCATTTGACACCAGAATTCCT 58.229 40.909 0.65 0.00 0.00 3.36
406 408 5.048504 TCTGAAGCATTTGACACCAGAATTC 60.049 40.000 0.00 0.00 0.00 2.17
421 424 3.181471 ACCTTCGAATCGATCTGAAGCAT 60.181 43.478 23.93 15.78 37.36 3.79
458 461 4.436998 CCAGCGTCCCGGAGTCAC 62.437 72.222 0.73 0.00 0.00 3.67
459 462 4.988716 ACCAGCGTCCCGGAGTCA 62.989 66.667 0.73 0.00 0.00 3.41
472 476 2.336478 ACGTGCTCCGAGAGACCAG 61.336 63.158 0.00 0.00 40.70 4.00
494 498 1.442857 GACAGTCAGGCACTCGTCG 60.443 63.158 0.00 0.00 34.60 5.12
497 501 0.799917 CGATGACAGTCAGGCACTCG 60.800 60.000 9.64 9.09 38.79 4.18
498 502 0.528017 TCGATGACAGTCAGGCACTC 59.472 55.000 9.64 0.20 38.79 3.51
499 503 0.244994 GTCGATGACAGTCAGGCACT 59.755 55.000 9.64 0.00 38.79 4.40
500 504 0.038251 TGTCGATGACAGTCAGGCAC 60.038 55.000 9.64 5.61 38.79 5.01
504 508 4.051237 TGAAACTTGTCGATGACAGTCAG 58.949 43.478 9.64 0.00 43.69 3.51
505 509 3.802139 GTGAAACTTGTCGATGACAGTCA 59.198 43.478 5.50 5.50 43.69 3.41
506 510 3.184581 GGTGAAACTTGTCGATGACAGTC 59.815 47.826 0.00 0.00 43.69 3.51
507 511 3.131396 GGTGAAACTTGTCGATGACAGT 58.869 45.455 0.00 0.00 43.69 3.55
513 517 3.242608 CGTTGTTGGTGAAACTTGTCGAT 60.243 43.478 0.00 0.00 39.70 3.59
522 526 3.010420 TGATGTGTCGTTGTTGGTGAAA 58.990 40.909 0.00 0.00 0.00 2.69
524 528 2.317530 TGATGTGTCGTTGTTGGTGA 57.682 45.000 0.00 0.00 0.00 4.02
526 530 2.807967 CTGATGATGTGTCGTTGTTGGT 59.192 45.455 0.00 0.00 0.00 3.67
527 531 2.413239 GCTGATGATGTGTCGTTGTTGG 60.413 50.000 0.00 0.00 0.00 3.77
546 550 1.320344 TACCGCCATCAGAACGAGCT 61.320 55.000 0.00 0.00 0.00 4.09
558 562 2.693762 CGAACGACCTCTACCGCCA 61.694 63.158 0.00 0.00 0.00 5.69
567 571 0.815734 CCTACACCATCGAACGACCT 59.184 55.000 0.00 0.00 0.00 3.85
577 581 1.620819 GCATCGAGATCCCTACACCAT 59.379 52.381 0.00 0.00 0.00 3.55
579 583 1.040646 TGCATCGAGATCCCTACACC 58.959 55.000 0.00 0.00 0.00 4.16
604 608 4.871557 CCACAAAGCATCCCAAACATAATG 59.128 41.667 0.00 0.00 0.00 1.90
606 610 4.155709 TCCACAAAGCATCCCAAACATAA 58.844 39.130 0.00 0.00 0.00 1.90
706 719 1.002684 CTAGTCACTCGCCGTATCCAC 60.003 57.143 0.00 0.00 0.00 4.02
727 740 1.006571 GACGTGTCATGTGTCCGGT 60.007 57.895 1.41 0.00 0.00 5.28
738 751 1.460743 CATGTCACATGTGGACGTGTC 59.539 52.381 25.16 8.23 43.66 3.67
744 757 3.721793 TGCACATGTCACATGTGGA 57.278 47.368 39.35 36.85 46.85 4.02
789 802 1.217882 GTGGCTGTATCGTGGTATGC 58.782 55.000 0.00 0.00 0.00 3.14
963 995 3.132801 GAGCTGGCTTGGCTGCTC 61.133 66.667 28.94 28.94 42.91 4.26
971 1003 2.357517 CGGTCGTTGAGCTGGCTT 60.358 61.111 0.00 0.00 0.00 4.35
1054 1086 1.306568 AGGAGGACAAGGAGGAGGC 60.307 63.158 0.00 0.00 0.00 4.70
1063 1095 1.487976 GGAGCATGATGAGGAGGACAA 59.512 52.381 0.00 0.00 0.00 3.18
1166 1198 2.907917 CCTCTACCTCCGCCTCCG 60.908 72.222 0.00 0.00 0.00 4.63
1167 1199 1.529713 CTCCTCTACCTCCGCCTCC 60.530 68.421 0.00 0.00 0.00 4.30
1168 1200 0.820482 GACTCCTCTACCTCCGCCTC 60.820 65.000 0.00 0.00 0.00 4.70
1169 1201 1.227946 GACTCCTCTACCTCCGCCT 59.772 63.158 0.00 0.00 0.00 5.52
1170 1202 1.104577 CAGACTCCTCTACCTCCGCC 61.105 65.000 0.00 0.00 0.00 6.13
1171 1203 0.107116 TCAGACTCCTCTACCTCCGC 60.107 60.000 0.00 0.00 0.00 5.54
1179 1211 1.077068 CTCCGCCTCAGACTCCTCT 60.077 63.158 0.00 0.00 0.00 3.69
1326 1364 4.767255 GTCAGGCTCCTGGCACGG 62.767 72.222 15.13 0.00 46.89 4.94
1547 1585 2.204291 AGTTGGGGATGGGCTGGA 60.204 61.111 0.00 0.00 0.00 3.86
1610 1649 1.815421 CGGAGGGCAAGATCCAACG 60.815 63.158 0.00 0.00 35.14 4.10
1722 1769 1.913317 GCATGAAGCGGAAATCAACC 58.087 50.000 0.00 0.00 0.00 3.77
1781 1841 5.505286 CAACACATCAAGAGAGAACAACAC 58.495 41.667 0.00 0.00 0.00 3.32
1786 1846 3.364764 GCAGCAACACATCAAGAGAGAAC 60.365 47.826 0.00 0.00 0.00 3.01
1824 1888 3.708220 GAGCCTCGCCTTCACCTCG 62.708 68.421 0.00 0.00 0.00 4.63
2018 2082 7.901283 TGATCCAATGTAATGTGATTTCCAT 57.099 32.000 0.00 0.00 0.00 3.41
2026 2090 6.361481 GCGATGAATTGATCCAATGTAATGTG 59.639 38.462 0.00 0.00 34.04 3.21
2038 2102 4.285292 GTGTTGATGGCGATGAATTGATC 58.715 43.478 0.00 0.00 0.00 2.92
2057 2121 1.209128 CTTCGTTCTGCTTGTCGTGT 58.791 50.000 0.00 0.00 0.00 4.49
2070 2134 2.281484 ATGCGTGCACCCTTCGTT 60.281 55.556 12.15 0.00 0.00 3.85
2072 2136 0.809636 TATGATGCGTGCACCCTTCG 60.810 55.000 12.15 0.00 0.00 3.79
2096 2163 3.077556 AGGCGCGATCCCAAGTCT 61.078 61.111 12.10 0.00 0.00 3.24
2115 2182 1.263484 TCATCGCTTCCTATCGTCGTC 59.737 52.381 0.00 0.00 0.00 4.20
2116 2183 1.306148 TCATCGCTTCCTATCGTCGT 58.694 50.000 0.00 0.00 0.00 4.34
2117 2184 2.311462 CTTCATCGCTTCCTATCGTCG 58.689 52.381 0.00 0.00 0.00 5.12
2120 2187 1.056103 CGCTTCATCGCTTCCTATCG 58.944 55.000 0.00 0.00 0.00 2.92
2123 2190 0.249073 GCTCGCTTCATCGCTTCCTA 60.249 55.000 0.00 0.00 0.00 2.94
2157 2224 1.477700 GTGCAGCATTAGAAATGCCCA 59.522 47.619 18.37 13.79 45.59 5.36
2160 2227 3.119743 TGTGAGTGCAGCATTAGAAATGC 60.120 43.478 15.14 15.14 44.85 3.56
2223 2293 4.386049 CCGATCAAGAATTCATAGTACCGC 59.614 45.833 8.44 0.00 0.00 5.68
2224 2294 4.386049 GCCGATCAAGAATTCATAGTACCG 59.614 45.833 8.44 2.47 0.00 4.02
2225 2295 5.297547 TGCCGATCAAGAATTCATAGTACC 58.702 41.667 8.44 0.00 0.00 3.34
2226 2296 5.107298 GCTGCCGATCAAGAATTCATAGTAC 60.107 44.000 8.44 0.00 0.00 2.73
2227 2297 4.991056 GCTGCCGATCAAGAATTCATAGTA 59.009 41.667 8.44 0.00 0.00 1.82
2237 2307 0.179100 GCTACAGCTGCCGATCAAGA 60.179 55.000 15.27 0.00 38.21 3.02
2350 2640 6.238484 CCGAGAAGAGACACAAAAGAAAACAT 60.238 38.462 0.00 0.00 0.00 2.71
2517 2810 2.739932 CGATCTTCGGCTCTTCCACATT 60.740 50.000 0.00 0.00 36.00 2.71
2518 2811 1.202463 CGATCTTCGGCTCTTCCACAT 60.202 52.381 0.00 0.00 36.00 3.21
2527 2820 3.905678 CCCGAGCGATCTTCGGCT 61.906 66.667 22.89 10.59 44.82 5.52
2563 2856 1.868997 ACTTCGCAAGTTGCATCCG 59.131 52.632 26.56 13.84 45.36 4.18
2657 2950 5.736813 AGATCTGAACAGACTAGTCGTAGT 58.263 41.667 17.07 13.82 42.59 2.73
2682 2975 2.279935 AACGGACAAAATACCCTGCA 57.720 45.000 0.00 0.00 0.00 4.41
2780 3073 1.134521 CCTTTCTATGGTGCACGGCTA 60.135 52.381 11.45 1.20 0.00 3.93
2798 3092 4.271776 CCGAACGTACAGAAAGAAAAACCT 59.728 41.667 0.00 0.00 0.00 3.50
2799 3093 4.521010 CCGAACGTACAGAAAGAAAAACC 58.479 43.478 0.00 0.00 0.00 3.27
2800 3094 4.270808 TCCCGAACGTACAGAAAGAAAAAC 59.729 41.667 0.00 0.00 0.00 2.43
2801 3095 4.440880 TCCCGAACGTACAGAAAGAAAAA 58.559 39.130 0.00 0.00 0.00 1.94
2802 3096 4.053295 CTCCCGAACGTACAGAAAGAAAA 58.947 43.478 0.00 0.00 0.00 2.29
2803 3097 3.068590 ACTCCCGAACGTACAGAAAGAAA 59.931 43.478 0.00 0.00 0.00 2.52
2804 3098 2.624838 ACTCCCGAACGTACAGAAAGAA 59.375 45.455 0.00 0.00 0.00 2.52
2805 3099 2.233271 ACTCCCGAACGTACAGAAAGA 58.767 47.619 0.00 0.00 0.00 2.52
2806 3100 2.719426 ACTCCCGAACGTACAGAAAG 57.281 50.000 0.00 0.00 0.00 2.62
2807 3101 4.549458 CTTAACTCCCGAACGTACAGAAA 58.451 43.478 0.00 0.00 0.00 2.52
2808 3102 3.612479 GCTTAACTCCCGAACGTACAGAA 60.612 47.826 0.00 0.00 0.00 3.02
2809 3103 2.095059 GCTTAACTCCCGAACGTACAGA 60.095 50.000 0.00 0.00 0.00 3.41
2810 3104 2.257034 GCTTAACTCCCGAACGTACAG 58.743 52.381 0.00 0.00 0.00 2.74
2811 3105 1.612950 TGCTTAACTCCCGAACGTACA 59.387 47.619 0.00 0.00 0.00 2.90
2812 3106 2.352503 TGCTTAACTCCCGAACGTAC 57.647 50.000 0.00 0.00 0.00 3.67
2813 3107 2.417651 CCATGCTTAACTCCCGAACGTA 60.418 50.000 0.00 0.00 0.00 3.57
2814 3108 1.674817 CCATGCTTAACTCCCGAACGT 60.675 52.381 0.00 0.00 0.00 3.99
2815 3109 1.006832 CCATGCTTAACTCCCGAACG 58.993 55.000 0.00 0.00 0.00 3.95
2816 3110 0.733150 GCCATGCTTAACTCCCGAAC 59.267 55.000 0.00 0.00 0.00 3.95
2817 3111 0.326595 TGCCATGCTTAACTCCCGAA 59.673 50.000 0.00 0.00 0.00 4.30
2818 3112 0.326595 TTGCCATGCTTAACTCCCGA 59.673 50.000 0.00 0.00 0.00 5.14
2819 3113 0.451783 GTTGCCATGCTTAACTCCCG 59.548 55.000 0.00 0.00 0.00 5.14
2820 3114 0.817654 GGTTGCCATGCTTAACTCCC 59.182 55.000 0.00 0.00 0.00 4.30
2821 3115 0.817654 GGGTTGCCATGCTTAACTCC 59.182 55.000 0.00 0.00 0.00 3.85
2822 3116 0.451783 CGGGTTGCCATGCTTAACTC 59.548 55.000 0.00 0.00 0.00 3.01
2823 3117 0.037590 TCGGGTTGCCATGCTTAACT 59.962 50.000 0.00 0.00 0.00 2.24
2824 3118 0.885196 TTCGGGTTGCCATGCTTAAC 59.115 50.000 0.00 0.00 0.00 2.01
2825 3119 0.885196 GTTCGGGTTGCCATGCTTAA 59.115 50.000 0.00 0.00 0.00 1.85
2826 3120 1.302383 CGTTCGGGTTGCCATGCTTA 61.302 55.000 0.00 0.00 0.00 3.09
2827 3121 2.625823 CGTTCGGGTTGCCATGCTT 61.626 57.895 0.00 0.00 0.00 3.91
2828 3122 3.055719 CGTTCGGGTTGCCATGCT 61.056 61.111 0.00 0.00 0.00 3.79
2829 3123 4.114997 CCGTTCGGGTTGCCATGC 62.115 66.667 3.04 0.00 0.00 4.06
2830 3124 3.439540 CCCGTTCGGGTTGCCATG 61.440 66.667 20.65 0.00 40.49 3.66
2839 3133 2.965572 TACCATCTAAACCCGTTCGG 57.034 50.000 4.08 4.08 37.81 4.30
2840 3134 3.853475 ACTTACCATCTAAACCCGTTCG 58.147 45.455 0.00 0.00 0.00 3.95
2841 3135 6.875726 ACTAAACTTACCATCTAAACCCGTTC 59.124 38.462 0.00 0.00 0.00 3.95
2842 3136 6.652062 CACTAAACTTACCATCTAAACCCGTT 59.348 38.462 0.00 0.00 0.00 4.44
2843 3137 6.168389 CACTAAACTTACCATCTAAACCCGT 58.832 40.000 0.00 0.00 0.00 5.28
2844 3138 6.091713 CACACTAAACTTACCATCTAAACCCG 59.908 42.308 0.00 0.00 0.00 5.28
2845 3139 6.128090 GCACACTAAACTTACCATCTAAACCC 60.128 42.308 0.00 0.00 0.00 4.11
2846 3140 6.401796 CGCACACTAAACTTACCATCTAAACC 60.402 42.308 0.00 0.00 0.00 3.27
2847 3141 6.531439 CGCACACTAAACTTACCATCTAAAC 58.469 40.000 0.00 0.00 0.00 2.01
2848 3142 5.121142 GCGCACACTAAACTTACCATCTAAA 59.879 40.000 0.30 0.00 0.00 1.85
2849 3143 4.628333 GCGCACACTAAACTTACCATCTAA 59.372 41.667 0.30 0.00 0.00 2.10
2850 3144 4.178540 GCGCACACTAAACTTACCATCTA 58.821 43.478 0.30 0.00 0.00 1.98
2851 3145 3.000727 GCGCACACTAAACTTACCATCT 58.999 45.455 0.30 0.00 0.00 2.90
2852 3146 2.222729 CGCGCACACTAAACTTACCATC 60.223 50.000 8.75 0.00 0.00 3.51
2853 3147 1.730064 CGCGCACACTAAACTTACCAT 59.270 47.619 8.75 0.00 0.00 3.55
2854 3148 1.141645 CGCGCACACTAAACTTACCA 58.858 50.000 8.75 0.00 0.00 3.25
2855 3149 1.389106 CTCGCGCACACTAAACTTACC 59.611 52.381 8.75 0.00 0.00 2.85
2856 3150 2.322161 TCTCGCGCACACTAAACTTAC 58.678 47.619 8.75 0.00 0.00 2.34
2857 3151 2.710220 TCTCGCGCACACTAAACTTA 57.290 45.000 8.75 0.00 0.00 2.24
2858 3152 2.080286 ATCTCGCGCACACTAAACTT 57.920 45.000 8.75 0.00 0.00 2.66
2859 3153 2.080286 AATCTCGCGCACACTAAACT 57.920 45.000 8.75 0.00 0.00 2.66
2860 3154 3.176708 TCTAATCTCGCGCACACTAAAC 58.823 45.455 8.75 0.00 0.00 2.01
2861 3155 3.128068 TCTCTAATCTCGCGCACACTAAA 59.872 43.478 8.75 0.00 0.00 1.85
2862 3156 2.681344 TCTCTAATCTCGCGCACACTAA 59.319 45.455 8.75 0.00 0.00 2.24
2863 3157 2.285977 TCTCTAATCTCGCGCACACTA 58.714 47.619 8.75 0.00 0.00 2.74
2864 3158 1.095600 TCTCTAATCTCGCGCACACT 58.904 50.000 8.75 0.00 0.00 3.55
2865 3159 1.909376 TTCTCTAATCTCGCGCACAC 58.091 50.000 8.75 0.00 0.00 3.82
2866 3160 2.259618 GTTTCTCTAATCTCGCGCACA 58.740 47.619 8.75 0.00 0.00 4.57
2867 3161 2.259618 TGTTTCTCTAATCTCGCGCAC 58.740 47.619 8.75 0.00 0.00 5.34
2868 3162 2.647529 TGTTTCTCTAATCTCGCGCA 57.352 45.000 8.75 0.00 0.00 6.09
2869 3163 2.219674 CCATGTTTCTCTAATCTCGCGC 59.780 50.000 0.00 0.00 0.00 6.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.