Multiple sequence alignment - TraesCS4D01G078900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G078900 chr4D 100.000 5391 0 0 1 5391 52780157 52774767 0.000000e+00 9956.0
1 TraesCS4D01G078900 chr4D 96.053 152 6 0 2858 3009 362346256 362346407 1.160000e-61 248.0
2 TraesCS4D01G078900 chr4D 88.945 199 17 4 2320 2518 294346408 294346215 1.940000e-59 241.0
3 TraesCS4D01G078900 chr4D 86.432 199 25 2 2321 2518 402546615 402546418 3.270000e-52 217.0
4 TraesCS4D01G078900 chr4D 100.000 47 0 0 5037 5083 52775073 52775027 2.670000e-13 87.9
5 TraesCS4D01G078900 chr4D 100.000 47 0 0 5085 5131 52775121 52775075 2.670000e-13 87.9
6 TraesCS4D01G078900 chr4B 95.097 2223 83 14 1 2216 77665230 77663027 0.000000e+00 3478.0
7 TraesCS4D01G078900 chr4B 93.769 2006 82 17 3109 5083 77662235 77660242 0.000000e+00 2972.0
8 TraesCS4D01G078900 chr4B 94.073 658 27 3 2217 2867 77662948 77662296 0.000000e+00 989.0
9 TraesCS4D01G078900 chr4B 88.442 199 18 4 2320 2518 362144169 362143976 9.030000e-58 235.0
10 TraesCS4D01G078900 chr4B 85.787 197 25 3 2321 2516 498391701 498391507 7.080000e-49 206.0
11 TraesCS4D01G078900 chr4B 94.444 90 5 0 3005 3094 77662300 77662211 7.280000e-29 139.0
12 TraesCS4D01G078900 chr4A 94.175 1339 51 9 884 2216 544032829 544034146 0.000000e+00 2015.0
13 TraesCS4D01G078900 chr4A 94.127 1328 58 10 3005 4317 544034994 544036316 0.000000e+00 2002.0
14 TraesCS4D01G078900 chr4A 94.131 903 36 8 1 901 544031929 544032816 0.000000e+00 1358.0
15 TraesCS4D01G078900 chr4A 92.154 599 33 6 4487 5083 544036431 544037017 0.000000e+00 833.0
16 TraesCS4D01G078900 chr4A 89.635 521 18 16 2224 2717 544034189 544034700 9.850000e-177 630.0
17 TraesCS4D01G078900 chr4A 92.258 155 9 1 2716 2867 544034844 544034998 3.270000e-52 217.0
18 TraesCS4D01G078900 chr4A 85.427 199 27 2 2321 2518 60035659 60035462 7.080000e-49 206.0
19 TraesCS4D01G078900 chr4A 83.051 118 20 0 4346 4463 544036316 544036433 2.050000e-19 108.0
20 TraesCS4D01G078900 chr7D 74.586 724 160 18 24 729 153404435 153405152 4.080000e-76 296.0
21 TraesCS4D01G078900 chr7D 85.714 196 26 1 2320 2515 134441526 134441333 7.080000e-49 206.0
22 TraesCS4D01G078900 chr3A 94.268 157 9 0 2854 3010 332409232 332409076 1.940000e-59 241.0
23 TraesCS4D01G078900 chr6B 95.333 150 7 0 2860 3009 680405572 680405721 6.980000e-59 239.0
24 TraesCS4D01G078900 chr6B 95.270 148 7 0 2861 3008 103700495 103700348 9.030000e-58 235.0
25 TraesCS4D01G078900 chr7B 94.194 155 8 1 2857 3010 245179234 245179388 9.030000e-58 235.0
26 TraesCS4D01G078900 chr7B 94.118 153 8 1 2855 3007 671719084 671719235 1.170000e-56 231.0
27 TraesCS4D01G078900 chr1B 95.270 148 7 0 2863 3010 552101674 552101821 9.030000e-58 235.0
28 TraesCS4D01G078900 chr5D 94.118 153 9 0 2857 3009 505463861 505463709 3.250000e-57 233.0
29 TraesCS4D01G078900 chr5B 93.590 156 9 1 2853 3008 221096683 221096837 1.170000e-56 231.0
30 TraesCS4D01G078900 chr5A 84.916 179 23 3 2326 2504 692047070 692047244 1.540000e-40 178.0
31 TraesCS4D01G078900 chr2D 89.706 68 7 0 5212 5279 166205590 166205657 2.670000e-13 87.9
32 TraesCS4D01G078900 chr3B 90.698 43 4 0 2485 2527 761920330 761920372 2.100000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G078900 chr4D 52774767 52780157 5390 True 9956.000000 9956 100.000000 1 5391 1 chr4D.!!$R1 5390
1 TraesCS4D01G078900 chr4B 77660242 77665230 4988 True 1894.500000 3478 94.345750 1 5083 4 chr4B.!!$R3 5082
2 TraesCS4D01G078900 chr4A 544031929 544037017 5088 False 1023.285714 2015 91.361571 1 5083 7 chr4A.!!$F1 5082
3 TraesCS4D01G078900 chr7D 153404435 153405152 717 False 296.000000 296 74.586000 24 729 1 chr7D.!!$F1 705

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
480 484 0.247736 AGACCGTTGCAGTGATCCTC 59.752 55.000 0.00 0.0 0.00 3.71 F
748 761 0.391597 TTTTTGTCCGGTCGCTCTCT 59.608 50.000 0.00 0.0 0.00 3.10 F
943 990 0.682852 TTTCCGTTGTCGTGGAGGAT 59.317 50.000 0.00 0.0 35.26 3.24 F
947 994 1.071019 CGTTGTCGTGGAGGATGTCG 61.071 60.000 0.00 0.0 0.00 4.35 F
1578 1626 1.299976 GGTGGGGATGTTCTTCGCT 59.700 57.895 3.67 0.0 0.00 4.93 F
2894 3202 0.037605 GGTTTCGTGTGGATCCGAGT 60.038 55.000 7.39 0.0 34.16 4.18 F
2966 3274 0.031817 CCAATCCTTGCCAATCCCCT 60.032 55.000 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1562 1610 0.036388 GTGAGCGAAGAACATCCCCA 60.036 55.0 0.00 0.0 0.00 4.96 R
1616 1664 0.163788 CAACCAGCAAACTACGAGCG 59.836 55.0 0.00 0.0 0.00 5.03 R
2875 3183 0.037605 ACTCGGATCCACACGAAACC 60.038 55.0 13.41 0.0 38.79 3.27 R
2877 3185 0.037697 CCACTCGGATCCACACGAAA 60.038 55.0 13.41 0.0 38.79 3.46 R
2952 3260 0.031817 ATTGGAGGGGATTGGCAAGG 60.032 55.0 5.96 0.0 0.00 3.61 R
4172 4495 0.707616 AGGTGTCTCCAGCTCTAGGT 59.292 55.0 0.00 0.0 46.14 3.08 R
4391 4718 0.745845 GCCATCCATGTCGCTGAACT 60.746 55.0 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 172 6.430925 CGCATGAATATTCTTTCCTCCCATTA 59.569 38.462 16.24 0.00 0.00 1.90
194 195 2.609491 CCATTCAACGACGAGAAGACCA 60.609 50.000 0.00 0.00 0.00 4.02
398 402 4.522975 ATAGGCTTTGGGGCGGCC 62.523 66.667 22.00 22.00 45.89 6.13
480 484 0.247736 AGACCGTTGCAGTGATCCTC 59.752 55.000 0.00 0.00 0.00 3.71
583 596 5.789521 TCGTTGAAGTTGATGAAGATACCA 58.210 37.500 0.00 0.00 0.00 3.25
662 675 1.351707 CACGTCTTGCAAACGCACT 59.648 52.632 24.26 10.28 43.76 4.40
748 761 0.391597 TTTTTGTCCGGTCGCTCTCT 59.608 50.000 0.00 0.00 0.00 3.10
808 821 7.255977 GCTTAGGTTCTTTCTTTGAGGGAAAAT 60.256 37.037 0.00 0.00 33.17 1.82
809 822 6.410942 AGGTTCTTTCTTTGAGGGAAAATG 57.589 37.500 0.00 0.00 33.17 2.32
811 824 6.384015 AGGTTCTTTCTTTGAGGGAAAATGTT 59.616 34.615 0.00 0.00 33.17 2.71
812 825 6.479990 GGTTCTTTCTTTGAGGGAAAATGTTG 59.520 38.462 0.00 0.00 33.17 3.33
813 826 6.790232 TCTTTCTTTGAGGGAAAATGTTGT 57.210 33.333 0.00 0.00 33.17 3.32
814 827 6.805713 TCTTTCTTTGAGGGAAAATGTTGTC 58.194 36.000 0.00 0.00 33.17 3.18
815 828 6.379703 TCTTTCTTTGAGGGAAAATGTTGTCA 59.620 34.615 0.00 0.00 33.17 3.58
817 830 4.584325 TCTTTGAGGGAAAATGTTGTCAGG 59.416 41.667 0.00 0.00 0.00 3.86
818 831 2.238521 TGAGGGAAAATGTTGTCAGGC 58.761 47.619 0.00 0.00 0.00 4.85
819 832 2.158475 TGAGGGAAAATGTTGTCAGGCT 60.158 45.455 0.00 0.00 0.00 4.58
820 833 2.893489 GAGGGAAAATGTTGTCAGGCTT 59.107 45.455 0.00 0.00 0.00 4.35
922 965 2.188469 GTCGGGGAGCCGCAATAA 59.812 61.111 4.41 0.00 0.00 1.40
943 990 0.682852 TTTCCGTTGTCGTGGAGGAT 59.317 50.000 0.00 0.00 35.26 3.24
947 994 1.071019 CGTTGTCGTGGAGGATGTCG 61.071 60.000 0.00 0.00 0.00 4.35
1484 1531 2.104111 TCCCAATCAAGGTATACCAGCG 59.896 50.000 23.87 11.26 38.89 5.18
1524 1572 4.401022 TGAGATTGCATCCTTTGTTGAGT 58.599 39.130 0.00 0.00 0.00 3.41
1562 1610 1.302832 CTTTGCGCTCCTTCCTGGT 60.303 57.895 9.73 0.00 37.07 4.00
1578 1626 1.299976 GGTGGGGATGTTCTTCGCT 59.700 57.895 3.67 0.00 0.00 4.93
1601 1649 5.185454 TCACCTTATGTTCGATGAAATGCT 58.815 37.500 0.00 0.00 0.00 3.79
1608 1656 6.932356 ATGTTCGATGAAATGCTCATTAGT 57.068 33.333 0.00 0.00 45.23 2.24
1616 1664 6.135290 TGAAATGCTCATTAGTGTAATGCC 57.865 37.500 2.34 0.00 43.97 4.40
1691 1740 8.779354 ACTTAATTGTACTTCCTTAGCAGAAG 57.221 34.615 0.00 0.00 45.12 2.85
1803 1856 7.551617 TCTTGTGATCATAGTGTAGTTCGACTA 59.448 37.037 0.00 0.00 0.00 2.59
1818 1871 6.505272 AGTTCGACTATGTAAGGTATCTTGC 58.495 40.000 0.00 0.00 36.36 4.01
1819 1872 5.104562 TCGACTATGTAAGGTATCTTGCG 57.895 43.478 0.00 0.00 38.25 4.85
1820 1873 3.669122 CGACTATGTAAGGTATCTTGCGC 59.331 47.826 0.00 0.00 38.25 6.09
1821 1874 4.556898 CGACTATGTAAGGTATCTTGCGCT 60.557 45.833 9.73 0.00 38.25 5.92
1822 1875 5.277857 ACTATGTAAGGTATCTTGCGCTT 57.722 39.130 9.73 0.00 38.25 4.68
1823 1876 5.050490 ACTATGTAAGGTATCTTGCGCTTG 58.950 41.667 9.73 0.65 38.25 4.01
1869 1923 2.846193 AGCTTACTTGTTTCCGCTCAA 58.154 42.857 0.00 0.00 0.00 3.02
1965 2019 4.774200 CCTTTGGAGAAATTGGTTGGATCT 59.226 41.667 0.00 0.00 0.00 2.75
2165 2219 1.539827 CTGGGTTAAAGAAAGGTGCGG 59.460 52.381 0.00 0.00 0.00 5.69
2222 2354 7.308469 CCTTTGGTATACTCGGTAGTCTACATC 60.308 44.444 12.08 0.00 37.15 3.06
2232 2364 4.156190 CGGTAGTCTACATCAGTGAACAGT 59.844 45.833 12.08 0.00 0.00 3.55
2451 2589 9.383519 TCTTAGCACATTTTTCTATAGAGTTGG 57.616 33.333 2.02 0.00 0.00 3.77
2481 2619 8.819643 ACTTAAGCTAGTTTGACTTAGAACAG 57.180 34.615 1.29 0.00 0.00 3.16
2565 2703 6.192970 AGCTACTAGATGCCAAATTACCAT 57.807 37.500 0.00 0.00 0.00 3.55
2574 2712 4.022603 TGCCAAATTACCATGCATGTACT 58.977 39.130 24.58 9.62 0.00 2.73
2674 2833 6.608808 AGTTAAAGCTCAATCTGGCCATATTT 59.391 34.615 13.40 1.52 0.00 1.40
2758 3066 4.943705 CCACTGTGTGCTTAAGTATGGATT 59.056 41.667 7.08 0.00 31.34 3.01
2820 3128 4.044336 TGTTTGTTGAGATGTTTGCCTG 57.956 40.909 0.00 0.00 0.00 4.85
2843 3151 8.711170 CCTGTAAATACTAAATTAGTCCCTCCA 58.289 37.037 9.17 2.46 40.14 3.86
2867 3175 8.091449 CCATATCCGAATAGATATCCTTTAGGC 58.909 40.741 0.00 0.00 37.35 3.93
2868 3176 5.934402 TCCGAATAGATATCCTTTAGGCC 57.066 43.478 0.00 0.00 34.44 5.19
2869 3177 5.590818 TCCGAATAGATATCCTTTAGGCCT 58.409 41.667 11.78 11.78 34.44 5.19
2870 3178 6.023603 TCCGAATAGATATCCTTTAGGCCTT 58.976 40.000 12.58 0.00 34.44 4.35
2871 3179 6.070767 TCCGAATAGATATCCTTTAGGCCTTG 60.071 42.308 12.58 1.17 34.44 3.61
2872 3180 6.295916 CCGAATAGATATCCTTTAGGCCTTGT 60.296 42.308 12.58 0.00 34.44 3.16
2873 3181 7.162082 CGAATAGATATCCTTTAGGCCTTGTT 58.838 38.462 12.58 0.00 34.44 2.83
2874 3182 7.332182 CGAATAGATATCCTTTAGGCCTTGTTC 59.668 40.741 12.58 1.60 34.44 3.18
2875 3183 4.962155 AGATATCCTTTAGGCCTTGTTCG 58.038 43.478 12.58 0.00 34.44 3.95
2876 3184 2.420058 ATCCTTTAGGCCTTGTTCGG 57.580 50.000 12.58 5.17 34.44 4.30
2877 3185 1.061546 TCCTTTAGGCCTTGTTCGGT 58.938 50.000 12.58 0.00 34.44 4.69
2878 3186 1.422402 TCCTTTAGGCCTTGTTCGGTT 59.578 47.619 12.58 0.00 34.44 4.44
2879 3187 2.158579 TCCTTTAGGCCTTGTTCGGTTT 60.159 45.455 12.58 0.00 34.44 3.27
2880 3188 2.228103 CCTTTAGGCCTTGTTCGGTTTC 59.772 50.000 12.58 0.00 0.00 2.78
2881 3189 1.515081 TTAGGCCTTGTTCGGTTTCG 58.485 50.000 12.58 0.00 37.82 3.46
2882 3190 0.393820 TAGGCCTTGTTCGGTTTCGT 59.606 50.000 12.58 0.00 37.69 3.85
2883 3191 1.164041 AGGCCTTGTTCGGTTTCGTG 61.164 55.000 0.00 0.00 37.69 4.35
2884 3192 1.441732 GGCCTTGTTCGGTTTCGTGT 61.442 55.000 0.00 0.00 37.69 4.49
2885 3193 0.316689 GCCTTGTTCGGTTTCGTGTG 60.317 55.000 0.00 0.00 37.69 3.82
2886 3194 0.306533 CCTTGTTCGGTTTCGTGTGG 59.693 55.000 0.00 0.00 37.69 4.17
2887 3195 1.292061 CTTGTTCGGTTTCGTGTGGA 58.708 50.000 0.00 0.00 37.69 4.02
2888 3196 1.871039 CTTGTTCGGTTTCGTGTGGAT 59.129 47.619 0.00 0.00 37.69 3.41
2889 3197 1.504359 TGTTCGGTTTCGTGTGGATC 58.496 50.000 0.00 0.00 37.69 3.36
2890 3198 0.794473 GTTCGGTTTCGTGTGGATCC 59.206 55.000 4.20 4.20 37.69 3.36
2891 3199 0.668096 TTCGGTTTCGTGTGGATCCG 60.668 55.000 7.39 0.00 41.04 4.18
2892 3200 1.080366 CGGTTTCGTGTGGATCCGA 60.080 57.895 7.39 0.00 41.71 4.55
2893 3201 1.076533 CGGTTTCGTGTGGATCCGAG 61.077 60.000 7.39 0.00 41.71 4.63
2894 3202 0.037605 GGTTTCGTGTGGATCCGAGT 60.038 55.000 7.39 0.00 34.16 4.18
2895 3203 1.068474 GTTTCGTGTGGATCCGAGTG 58.932 55.000 7.39 0.00 34.16 3.51
2896 3204 0.037697 TTTCGTGTGGATCCGAGTGG 60.038 55.000 7.39 0.00 34.16 4.00
2906 3214 2.296920 TCCGAGTGGATTGAAGGGG 58.703 57.895 0.00 0.00 40.17 4.79
2907 3215 0.546747 TCCGAGTGGATTGAAGGGGT 60.547 55.000 0.00 0.00 40.17 4.95
2908 3216 0.328258 CCGAGTGGATTGAAGGGGTT 59.672 55.000 0.00 0.00 37.49 4.11
2909 3217 1.271926 CCGAGTGGATTGAAGGGGTTT 60.272 52.381 0.00 0.00 37.49 3.27
2910 3218 1.812571 CGAGTGGATTGAAGGGGTTTG 59.187 52.381 0.00 0.00 0.00 2.93
2911 3219 2.552155 CGAGTGGATTGAAGGGGTTTGA 60.552 50.000 0.00 0.00 0.00 2.69
2912 3220 3.084786 GAGTGGATTGAAGGGGTTTGAG 58.915 50.000 0.00 0.00 0.00 3.02
2913 3221 2.171003 GTGGATTGAAGGGGTTTGAGG 58.829 52.381 0.00 0.00 0.00 3.86
2914 3222 1.077005 TGGATTGAAGGGGTTTGAGGG 59.923 52.381 0.00 0.00 0.00 4.30
2915 3223 1.619704 GGATTGAAGGGGTTTGAGGGG 60.620 57.143 0.00 0.00 0.00 4.79
2916 3224 0.413434 ATTGAAGGGGTTTGAGGGGG 59.587 55.000 0.00 0.00 0.00 5.40
2917 3225 0.703056 TTGAAGGGGTTTGAGGGGGA 60.703 55.000 0.00 0.00 0.00 4.81
2918 3226 0.479589 TGAAGGGGTTTGAGGGGGAT 60.480 55.000 0.00 0.00 0.00 3.85
2919 3227 0.710588 GAAGGGGTTTGAGGGGGATT 59.289 55.000 0.00 0.00 0.00 3.01
2920 3228 1.078823 GAAGGGGTTTGAGGGGGATTT 59.921 52.381 0.00 0.00 0.00 2.17
2921 3229 2.084121 AGGGGTTTGAGGGGGATTTA 57.916 50.000 0.00 0.00 0.00 1.40
2922 3230 2.374179 AGGGGTTTGAGGGGGATTTAA 58.626 47.619 0.00 0.00 0.00 1.52
2923 3231 2.730816 AGGGGTTTGAGGGGGATTTAAA 59.269 45.455 0.00 0.00 0.00 1.52
2924 3232 2.835764 GGGGTTTGAGGGGGATTTAAAC 59.164 50.000 0.00 0.00 0.00 2.01
2925 3233 2.835764 GGGTTTGAGGGGGATTTAAACC 59.164 50.000 0.00 0.00 45.86 3.27
2926 3234 3.503412 GGGTTTGAGGGGGATTTAAACCT 60.503 47.826 14.54 0.00 45.86 3.50
2927 3235 5.359484 GGGTTTGAGGGGGATTTAAACCTC 61.359 50.000 13.24 13.24 45.86 3.85
2935 3243 7.782695 AGGGGGATTTAAACCTCTTATTAGT 57.217 36.000 6.64 0.00 32.28 2.24
2936 3244 7.813331 AGGGGGATTTAAACCTCTTATTAGTC 58.187 38.462 6.64 0.00 32.28 2.59
2937 3245 7.407918 AGGGGGATTTAAACCTCTTATTAGTCA 59.592 37.037 6.64 0.00 32.28 3.41
2938 3246 8.057011 GGGGGATTTAAACCTCTTATTAGTCAA 58.943 37.037 6.64 0.00 0.00 3.18
2939 3247 9.470399 GGGGATTTAAACCTCTTATTAGTCAAA 57.530 33.333 0.00 0.00 0.00 2.69
2957 3265 6.633856 AGTCAAAATATGAACCAATCCTTGC 58.366 36.000 0.00 0.00 40.50 4.01
2958 3266 5.812127 GTCAAAATATGAACCAATCCTTGCC 59.188 40.000 0.00 0.00 40.50 4.52
2959 3267 5.483231 TCAAAATATGAACCAATCCTTGCCA 59.517 36.000 0.00 0.00 34.30 4.92
2960 3268 6.013898 TCAAAATATGAACCAATCCTTGCCAA 60.014 34.615 0.00 0.00 34.30 4.52
2961 3269 6.564557 AAATATGAACCAATCCTTGCCAAT 57.435 33.333 0.00 0.00 0.00 3.16
2962 3270 5.796424 ATATGAACCAATCCTTGCCAATC 57.204 39.130 0.00 0.00 0.00 2.67
2963 3271 2.178580 TGAACCAATCCTTGCCAATCC 58.821 47.619 0.00 0.00 0.00 3.01
2964 3272 1.482182 GAACCAATCCTTGCCAATCCC 59.518 52.381 0.00 0.00 0.00 3.85
2965 3273 0.325577 ACCAATCCTTGCCAATCCCC 60.326 55.000 0.00 0.00 0.00 4.81
2966 3274 0.031817 CCAATCCTTGCCAATCCCCT 60.032 55.000 0.00 0.00 0.00 4.79
2967 3275 1.406903 CAATCCTTGCCAATCCCCTC 58.593 55.000 0.00 0.00 0.00 4.30
2968 3276 0.262876 AATCCTTGCCAATCCCCTCC 59.737 55.000 0.00 0.00 0.00 4.30
2969 3277 0.925720 ATCCTTGCCAATCCCCTCCA 60.926 55.000 0.00 0.00 0.00 3.86
2970 3278 1.145900 TCCTTGCCAATCCCCTCCAA 61.146 55.000 0.00 0.00 0.00 3.53
2971 3279 0.031817 CCTTGCCAATCCCCTCCAAT 60.032 55.000 0.00 0.00 0.00 3.16
2972 3280 1.406903 CTTGCCAATCCCCTCCAATC 58.593 55.000 0.00 0.00 0.00 2.67
2973 3281 0.032217 TTGCCAATCCCCTCCAATCC 60.032 55.000 0.00 0.00 0.00 3.01
2974 3282 0.925720 TGCCAATCCCCTCCAATCCT 60.926 55.000 0.00 0.00 0.00 3.24
2975 3283 0.178978 GCCAATCCCCTCCAATCCTC 60.179 60.000 0.00 0.00 0.00 3.71
2976 3284 1.527457 CCAATCCCCTCCAATCCTCT 58.473 55.000 0.00 0.00 0.00 3.69
2977 3285 1.855599 CCAATCCCCTCCAATCCTCTT 59.144 52.381 0.00 0.00 0.00 2.85
2978 3286 2.423947 CCAATCCCCTCCAATCCTCTTG 60.424 54.545 0.00 0.00 0.00 3.02
2979 3287 1.527457 ATCCCCTCCAATCCTCTTGG 58.473 55.000 0.00 0.00 40.87 3.61
2980 3288 0.624500 TCCCCTCCAATCCTCTTGGG 60.625 60.000 4.28 0.00 39.96 4.12
2981 3289 1.649271 CCCCTCCAATCCTCTTGGGG 61.649 65.000 0.00 0.00 46.89 4.96
2982 3290 0.624500 CCCTCCAATCCTCTTGGGGA 60.625 60.000 5.43 0.00 42.70 4.81
2983 3291 0.842635 CCTCCAATCCTCTTGGGGAG 59.157 60.000 5.43 0.00 42.70 4.30
2984 3292 1.626350 CCTCCAATCCTCTTGGGGAGA 60.626 57.143 5.43 0.00 46.38 3.71
2993 3301 3.847671 CTCTTGGGGAGAGGATTAACC 57.152 52.381 0.00 0.00 46.77 2.85
2994 3302 2.103263 CTCTTGGGGAGAGGATTAACCG 59.897 54.545 0.00 0.00 46.77 4.44
2995 3303 2.116238 CTTGGGGAGAGGATTAACCGA 58.884 52.381 0.00 0.00 44.74 4.69
2996 3304 2.257391 TGGGGAGAGGATTAACCGAA 57.743 50.000 0.00 0.00 44.74 4.30
2997 3305 1.835531 TGGGGAGAGGATTAACCGAAC 59.164 52.381 0.00 0.00 44.74 3.95
2998 3306 1.835531 GGGGAGAGGATTAACCGAACA 59.164 52.381 0.00 0.00 44.74 3.18
2999 3307 2.237893 GGGGAGAGGATTAACCGAACAA 59.762 50.000 0.00 0.00 44.74 2.83
3000 3308 3.532542 GGGAGAGGATTAACCGAACAAG 58.467 50.000 0.00 0.00 44.74 3.16
3001 3309 3.532542 GGAGAGGATTAACCGAACAAGG 58.467 50.000 0.00 0.00 44.74 3.61
3002 3310 2.937149 GAGAGGATTAACCGAACAAGGC 59.063 50.000 0.00 0.00 44.74 4.35
3003 3311 2.014857 GAGGATTAACCGAACAAGGCC 58.985 52.381 0.00 0.00 44.74 5.19
3004 3312 1.633945 AGGATTAACCGAACAAGGCCT 59.366 47.619 0.00 0.00 44.74 5.19
3005 3313 2.041216 AGGATTAACCGAACAAGGCCTT 59.959 45.455 13.78 13.78 44.74 4.35
3006 3314 3.264964 AGGATTAACCGAACAAGGCCTTA 59.735 43.478 20.00 0.00 44.74 2.69
3007 3315 3.626217 GGATTAACCGAACAAGGCCTTAG 59.374 47.826 20.00 15.05 33.69 2.18
3008 3316 2.773993 TAACCGAACAAGGCCTTAGG 57.226 50.000 20.00 20.25 33.69 2.69
3013 3321 2.280628 CGAACAAGGCCTTAGGACATC 58.719 52.381 20.00 9.17 29.21 3.06
3374 3690 4.010667 ACACAGTACGCTTTTGGGATTA 57.989 40.909 0.00 0.00 36.14 1.75
3475 3791 4.037923 ACCTGGCACTGTTTGTATTGAAAG 59.962 41.667 0.00 0.00 0.00 2.62
3486 3802 8.256611 TGTTTGTATTGAAAGCTCTGATCTAC 57.743 34.615 0.00 0.00 0.00 2.59
3495 3815 4.833478 AGCTCTGATCTACACAACCATT 57.167 40.909 0.00 0.00 0.00 3.16
3527 3847 6.579666 ACTTGTGCAATGATAAATCACACT 57.420 33.333 11.30 0.00 40.03 3.55
3528 3848 6.384224 ACTTGTGCAATGATAAATCACACTG 58.616 36.000 11.30 4.76 40.03 3.66
3610 3932 0.254747 TTGCGCTGGCCTAAATACCT 59.745 50.000 9.73 0.00 38.85 3.08
3678 4000 3.202906 TGAAGAAGTTTGGTCCTTGTCG 58.797 45.455 0.00 0.00 0.00 4.35
3723 4045 7.773690 GGCTCAAAGTTCCTATAGAAACCATTA 59.226 37.037 0.00 0.00 35.85 1.90
3724 4046 9.343539 GCTCAAAGTTCCTATAGAAACCATTAT 57.656 33.333 0.00 0.00 35.85 1.28
3859 4182 6.816640 CCTTTTGTTGTAGATCGACCATCTAA 59.183 38.462 3.33 0.00 44.37 2.10
3891 4214 7.277760 GCTTTGGTGTTCTTTGATGTACTTTTT 59.722 33.333 0.00 0.00 0.00 1.94
3997 4320 2.279517 GTGTATCTCTGCCCGGCG 60.280 66.667 4.58 0.00 0.00 6.46
4161 4484 1.900545 AAGCCAGCCGAGTAGGAACC 61.901 60.000 0.00 0.00 45.00 3.62
4168 4491 2.183555 GAGTAGGAACCCCGTGCG 59.816 66.667 0.00 0.00 37.58 5.34
4169 4492 2.283388 AGTAGGAACCCCGTGCGA 60.283 61.111 0.00 0.00 37.58 5.10
4192 4515 1.110442 CCTAGAGCTGGAGACACCTG 58.890 60.000 0.00 0.00 39.86 4.00
4235 4558 5.842328 TCGGCCTAAGAATTTAATCCCTCTA 59.158 40.000 0.00 0.00 0.00 2.43
4319 4646 2.806288 ATTGTGTTCAAGATACGCGC 57.194 45.000 5.73 0.00 36.97 6.86
4366 4693 5.739752 TGATCAATCTCGGCTGTAATTTG 57.260 39.130 0.00 0.00 0.00 2.32
4462 4789 7.335924 GTGCTGGGTGATGATTTTTAACTACTA 59.664 37.037 0.00 0.00 0.00 1.82
4639 4966 3.677648 CACAGCAGGCAAGCCCAC 61.678 66.667 7.62 0.00 36.58 4.61
4679 5007 3.849563 TGGTAGTAGCTGTGGTTGTTT 57.150 42.857 0.00 0.00 0.00 2.83
4783 5111 3.050275 GGCCAGGTGCTTCACGAC 61.050 66.667 0.00 0.00 40.92 4.34
4785 5113 2.743718 CCAGGTGCTTCACGACCT 59.256 61.111 0.00 0.00 43.79 3.85
4809 5142 1.183549 GTGGGATCTACAGTCACCGT 58.816 55.000 0.00 0.00 0.00 4.83
4814 5147 0.335361 ATCTACAGTCACCGTCCCCT 59.665 55.000 0.00 0.00 0.00 4.79
4875 5208 3.469739 TGCGTTATGTGATCATGCTGAT 58.530 40.909 0.00 0.00 40.34 2.90
4918 5251 0.804989 CATCTTCAGGCGTTTGGTCC 59.195 55.000 0.00 0.00 0.00 4.46
4941 5274 6.910290 TCCTGTACCCCAAAAATATAGGTAGT 59.090 38.462 0.00 0.00 33.84 2.73
5083 5424 0.825010 CAAACAGAGGCTGGCAGGTT 60.825 55.000 17.64 8.42 35.51 3.50
5084 5425 0.771127 AAACAGAGGCTGGCAGGTTA 59.229 50.000 17.64 0.00 35.51 2.85
5085 5426 0.036875 AACAGAGGCTGGCAGGTTAC 59.963 55.000 17.64 0.00 35.51 2.50
5086 5427 0.838122 ACAGAGGCTGGCAGGTTACT 60.838 55.000 17.64 0.00 35.51 2.24
5087 5428 0.326264 CAGAGGCTGGCAGGTTACTT 59.674 55.000 17.64 0.00 0.00 2.24
5088 5429 1.068121 AGAGGCTGGCAGGTTACTTT 58.932 50.000 17.64 0.00 0.00 2.66
5089 5430 1.168714 GAGGCTGGCAGGTTACTTTG 58.831 55.000 17.64 0.00 0.00 2.77
5090 5431 0.478507 AGGCTGGCAGGTTACTTTGT 59.521 50.000 17.64 0.00 0.00 2.83
5091 5432 1.133482 AGGCTGGCAGGTTACTTTGTT 60.133 47.619 17.64 0.00 0.00 2.83
5092 5433 1.269723 GGCTGGCAGGTTACTTTGTTC 59.730 52.381 17.64 0.00 0.00 3.18
5093 5434 2.230660 GCTGGCAGGTTACTTTGTTCT 58.769 47.619 17.64 0.00 0.00 3.01
5094 5435 2.226674 GCTGGCAGGTTACTTTGTTCTC 59.773 50.000 17.64 0.00 0.00 2.87
5095 5436 3.476552 CTGGCAGGTTACTTTGTTCTCA 58.523 45.455 6.61 0.00 0.00 3.27
5096 5437 3.882888 CTGGCAGGTTACTTTGTTCTCAA 59.117 43.478 6.61 0.00 0.00 3.02
5097 5438 3.630312 TGGCAGGTTACTTTGTTCTCAAC 59.370 43.478 0.00 0.00 32.93 3.18
5098 5439 3.883489 GGCAGGTTACTTTGTTCTCAACT 59.117 43.478 0.00 0.00 32.93 3.16
5099 5440 5.061179 GGCAGGTTACTTTGTTCTCAACTA 58.939 41.667 0.00 0.00 32.93 2.24
5100 5441 5.705905 GGCAGGTTACTTTGTTCTCAACTAT 59.294 40.000 0.00 0.00 32.93 2.12
5101 5442 6.206829 GGCAGGTTACTTTGTTCTCAACTATT 59.793 38.462 0.00 0.00 32.93 1.73
5102 5443 7.298854 GCAGGTTACTTTGTTCTCAACTATTC 58.701 38.462 0.00 0.00 32.93 1.75
5103 5444 7.573283 GCAGGTTACTTTGTTCTCAACTATTCC 60.573 40.741 0.00 0.00 32.93 3.01
5104 5445 7.444183 CAGGTTACTTTGTTCTCAACTATTCCA 59.556 37.037 0.00 0.00 32.93 3.53
5105 5446 7.661847 AGGTTACTTTGTTCTCAACTATTCCAG 59.338 37.037 0.00 0.00 32.93 3.86
5106 5447 7.444487 GGTTACTTTGTTCTCAACTATTCCAGT 59.556 37.037 0.00 0.00 40.05 4.00
5108 5449 7.881775 ACTTTGTTCTCAACTATTCCAGTTT 57.118 32.000 0.00 0.00 45.54 2.66
5109 5450 7.931275 ACTTTGTTCTCAACTATTCCAGTTTC 58.069 34.615 0.00 0.00 45.54 2.78
5110 5451 7.556275 ACTTTGTTCTCAACTATTCCAGTTTCA 59.444 33.333 0.00 0.00 45.54 2.69
5111 5452 7.496529 TTGTTCTCAACTATTCCAGTTTCAG 57.503 36.000 0.00 0.00 45.54 3.02
5112 5453 5.470098 TGTTCTCAACTATTCCAGTTTCAGC 59.530 40.000 0.00 0.00 45.54 4.26
5113 5454 5.227569 TCTCAACTATTCCAGTTTCAGCA 57.772 39.130 0.00 0.00 45.54 4.41
5114 5455 5.620206 TCTCAACTATTCCAGTTTCAGCAA 58.380 37.500 0.00 0.00 45.54 3.91
5115 5456 6.061441 TCTCAACTATTCCAGTTTCAGCAAA 58.939 36.000 0.00 0.00 45.54 3.68
5116 5457 6.017109 TCTCAACTATTCCAGTTTCAGCAAAC 60.017 38.462 0.00 0.00 45.54 2.93
5117 5458 5.592282 TCAACTATTCCAGTTTCAGCAAACA 59.408 36.000 2.87 0.00 45.54 2.83
5118 5459 5.695851 ACTATTCCAGTTTCAGCAAACAG 57.304 39.130 2.87 0.00 43.98 3.16
5119 5460 5.376625 ACTATTCCAGTTTCAGCAAACAGA 58.623 37.500 2.87 0.00 43.98 3.41
5120 5461 4.843220 ATTCCAGTTTCAGCAAACAGAG 57.157 40.909 2.87 0.00 43.98 3.35
5121 5462 2.575532 TCCAGTTTCAGCAAACAGAGG 58.424 47.619 2.87 2.22 43.98 3.69
5122 5463 1.000938 CCAGTTTCAGCAAACAGAGGC 60.001 52.381 2.87 0.00 43.98 4.70
5123 5464 1.952296 CAGTTTCAGCAAACAGAGGCT 59.048 47.619 2.87 0.00 43.98 4.58
5127 5468 2.517414 AGCAAACAGAGGCTGGCA 59.483 55.556 3.38 0.00 39.30 4.92
5128 5469 1.602888 AGCAAACAGAGGCTGGCAG 60.603 57.895 10.94 10.94 39.30 4.85
5129 5470 2.633509 GCAAACAGAGGCTGGCAGG 61.634 63.158 17.64 0.96 35.51 4.85
5130 5471 1.228367 CAAACAGAGGCTGGCAGGT 60.228 57.895 17.64 1.68 35.51 4.00
5131 5472 1.073897 AAACAGAGGCTGGCAGGTC 59.926 57.895 17.64 0.00 35.51 3.85
5132 5473 1.708993 AAACAGAGGCTGGCAGGTCA 61.709 55.000 17.64 0.00 35.51 4.02
5133 5474 1.708993 AACAGAGGCTGGCAGGTCAA 61.709 55.000 17.64 0.00 35.51 3.18
5134 5475 1.073722 CAGAGGCTGGCAGGTCAAA 59.926 57.895 17.64 0.00 0.00 2.69
5135 5476 0.959372 CAGAGGCTGGCAGGTCAAAG 60.959 60.000 17.64 0.00 0.00 2.77
5136 5477 2.282745 AGGCTGGCAGGTCAAAGC 60.283 61.111 17.64 0.00 34.86 3.51
5141 5482 3.890674 GGCAGGTCAAAGCCGTAG 58.109 61.111 0.00 0.00 41.70 3.51
5142 5483 2.399356 GGCAGGTCAAAGCCGTAGC 61.399 63.158 0.00 0.00 41.70 3.58
5143 5484 1.671054 GCAGGTCAAAGCCGTAGCA 60.671 57.895 0.00 0.00 43.56 3.49
5144 5485 1.026718 GCAGGTCAAAGCCGTAGCAT 61.027 55.000 0.00 0.00 43.56 3.79
5145 5486 0.729116 CAGGTCAAAGCCGTAGCATG 59.271 55.000 0.00 0.00 43.56 4.06
5146 5487 1.026718 AGGTCAAAGCCGTAGCATGC 61.027 55.000 10.51 10.51 43.56 4.06
5147 5488 1.060937 GTCAAAGCCGTAGCATGCG 59.939 57.895 13.01 0.00 46.33 4.73
5148 5489 2.277501 CAAAGCCGTAGCATGCGC 60.278 61.111 13.01 9.75 45.05 6.09
5149 5490 3.508840 AAAGCCGTAGCATGCGCC 61.509 61.111 13.01 5.78 45.05 6.53
5153 5494 4.838152 CCGTAGCATGCGCCCTGT 62.838 66.667 13.01 0.00 45.05 4.00
5154 5495 2.106131 CGTAGCATGCGCCCTGTA 59.894 61.111 13.01 0.00 37.41 2.74
5155 5496 1.520564 CGTAGCATGCGCCCTGTAA 60.521 57.895 13.01 0.00 37.41 2.41
5156 5497 0.880278 CGTAGCATGCGCCCTGTAAT 60.880 55.000 13.01 0.00 37.41 1.89
5157 5498 1.308998 GTAGCATGCGCCCTGTAATT 58.691 50.000 13.01 0.00 39.83 1.40
5158 5499 1.676006 GTAGCATGCGCCCTGTAATTT 59.324 47.619 13.01 0.00 39.83 1.82
5159 5500 1.185315 AGCATGCGCCCTGTAATTTT 58.815 45.000 13.01 0.00 39.83 1.82
5160 5501 1.135024 AGCATGCGCCCTGTAATTTTG 60.135 47.619 13.01 0.00 39.83 2.44
5161 5502 1.135141 GCATGCGCCCTGTAATTTTGA 60.135 47.619 4.18 0.00 0.00 2.69
5162 5503 2.673610 GCATGCGCCCTGTAATTTTGAA 60.674 45.455 4.18 0.00 0.00 2.69
5163 5504 3.784338 CATGCGCCCTGTAATTTTGAAT 58.216 40.909 4.18 0.00 0.00 2.57
5164 5505 3.502191 TGCGCCCTGTAATTTTGAATC 57.498 42.857 4.18 0.00 0.00 2.52
5165 5506 2.822561 TGCGCCCTGTAATTTTGAATCA 59.177 40.909 4.18 0.00 0.00 2.57
5166 5507 3.119531 TGCGCCCTGTAATTTTGAATCAG 60.120 43.478 4.18 0.00 0.00 2.90
5167 5508 3.734902 GCGCCCTGTAATTTTGAATCAGG 60.735 47.826 0.00 0.00 43.46 3.86
5173 5514 7.938140 CCTGTAATTTTGAATCAGGGTAAGA 57.062 36.000 0.00 0.00 41.10 2.10
5174 5515 7.762382 CCTGTAATTTTGAATCAGGGTAAGAC 58.238 38.462 0.00 0.00 41.10 3.01
5175 5516 7.393234 CCTGTAATTTTGAATCAGGGTAAGACA 59.607 37.037 0.00 0.00 41.10 3.41
5176 5517 8.698973 TGTAATTTTGAATCAGGGTAAGACAA 57.301 30.769 0.00 0.00 0.00 3.18
5177 5518 8.573035 TGTAATTTTGAATCAGGGTAAGACAAC 58.427 33.333 0.00 0.00 0.00 3.32
5178 5519 7.839680 AATTTTGAATCAGGGTAAGACAACT 57.160 32.000 0.00 0.00 0.00 3.16
5179 5520 7.839680 ATTTTGAATCAGGGTAAGACAACTT 57.160 32.000 0.00 0.00 39.81 2.66
5180 5521 7.654022 TTTTGAATCAGGGTAAGACAACTTT 57.346 32.000 0.00 0.00 37.53 2.66
5181 5522 8.754991 TTTTGAATCAGGGTAAGACAACTTTA 57.245 30.769 0.00 0.00 37.53 1.85
5182 5523 7.979444 TTGAATCAGGGTAAGACAACTTTAG 57.021 36.000 0.00 0.00 37.53 1.85
5183 5524 5.938125 TGAATCAGGGTAAGACAACTTTAGC 59.062 40.000 0.00 0.00 37.53 3.09
5184 5525 5.763876 ATCAGGGTAAGACAACTTTAGCT 57.236 39.130 0.00 0.00 37.53 3.32
5185 5526 6.869206 ATCAGGGTAAGACAACTTTAGCTA 57.131 37.500 0.00 0.00 37.53 3.32
5186 5527 6.282199 TCAGGGTAAGACAACTTTAGCTAG 57.718 41.667 0.00 0.00 37.53 3.42
5187 5528 4.870991 CAGGGTAAGACAACTTTAGCTAGC 59.129 45.833 6.62 6.62 37.53 3.42
5188 5529 4.530946 AGGGTAAGACAACTTTAGCTAGCA 59.469 41.667 18.83 0.00 37.53 3.49
5189 5530 4.870991 GGGTAAGACAACTTTAGCTAGCAG 59.129 45.833 18.83 8.32 37.53 4.24
5190 5531 4.330347 GGTAAGACAACTTTAGCTAGCAGC 59.670 45.833 18.83 0.00 38.28 5.25
5191 5532 2.979240 AGACAACTTTAGCTAGCAGCC 58.021 47.619 18.83 0.00 43.77 4.85
5192 5533 2.569404 AGACAACTTTAGCTAGCAGCCT 59.431 45.455 18.83 0.00 43.77 4.58
5193 5534 2.933260 GACAACTTTAGCTAGCAGCCTC 59.067 50.000 18.83 0.00 43.77 4.70
5194 5535 2.569404 ACAACTTTAGCTAGCAGCCTCT 59.431 45.455 18.83 0.00 43.77 3.69
5195 5536 3.008485 ACAACTTTAGCTAGCAGCCTCTT 59.992 43.478 18.83 0.00 43.77 2.85
5196 5537 3.990959 ACTTTAGCTAGCAGCCTCTTT 57.009 42.857 18.83 0.00 43.77 2.52
5197 5538 4.293662 ACTTTAGCTAGCAGCCTCTTTT 57.706 40.909 18.83 0.00 43.77 2.27
5198 5539 4.257731 ACTTTAGCTAGCAGCCTCTTTTC 58.742 43.478 18.83 0.00 43.77 2.29
5199 5540 4.019771 ACTTTAGCTAGCAGCCTCTTTTCT 60.020 41.667 18.83 0.00 43.77 2.52
5200 5541 4.559862 TTAGCTAGCAGCCTCTTTTCTT 57.440 40.909 18.83 0.00 43.77 2.52
5201 5542 3.431673 AGCTAGCAGCCTCTTTTCTTT 57.568 42.857 18.83 0.00 43.77 2.52
5202 5543 3.342719 AGCTAGCAGCCTCTTTTCTTTC 58.657 45.455 18.83 0.00 43.77 2.62
5203 5544 3.008923 AGCTAGCAGCCTCTTTTCTTTCT 59.991 43.478 18.83 0.00 43.77 2.52
5204 5545 4.223923 AGCTAGCAGCCTCTTTTCTTTCTA 59.776 41.667 18.83 0.00 43.77 2.10
5205 5546 4.331443 GCTAGCAGCCTCTTTTCTTTCTAC 59.669 45.833 10.63 0.00 34.48 2.59
5206 5547 3.680490 AGCAGCCTCTTTTCTTTCTACC 58.320 45.455 0.00 0.00 0.00 3.18
5207 5548 2.750166 GCAGCCTCTTTTCTTTCTACCC 59.250 50.000 0.00 0.00 0.00 3.69
5208 5549 3.810743 GCAGCCTCTTTTCTTTCTACCCA 60.811 47.826 0.00 0.00 0.00 4.51
5209 5550 4.398319 CAGCCTCTTTTCTTTCTACCCAA 58.602 43.478 0.00 0.00 0.00 4.12
5210 5551 4.216472 CAGCCTCTTTTCTTTCTACCCAAC 59.784 45.833 0.00 0.00 0.00 3.77
5211 5552 4.104897 AGCCTCTTTTCTTTCTACCCAACT 59.895 41.667 0.00 0.00 0.00 3.16
5212 5553 4.827835 GCCTCTTTTCTTTCTACCCAACTT 59.172 41.667 0.00 0.00 0.00 2.66
5213 5554 5.048643 GCCTCTTTTCTTTCTACCCAACTTC 60.049 44.000 0.00 0.00 0.00 3.01
5214 5555 6.062095 CCTCTTTTCTTTCTACCCAACTTCA 58.938 40.000 0.00 0.00 0.00 3.02
5215 5556 6.205658 CCTCTTTTCTTTCTACCCAACTTCAG 59.794 42.308 0.00 0.00 0.00 3.02
5216 5557 6.895782 TCTTTTCTTTCTACCCAACTTCAGA 58.104 36.000 0.00 0.00 0.00 3.27
5217 5558 6.992715 TCTTTTCTTTCTACCCAACTTCAGAG 59.007 38.462 0.00 0.00 0.00 3.35
5218 5559 4.273148 TCTTTCTACCCAACTTCAGAGC 57.727 45.455 0.00 0.00 0.00 4.09
5219 5560 3.646162 TCTTTCTACCCAACTTCAGAGCA 59.354 43.478 0.00 0.00 0.00 4.26
5220 5561 4.287067 TCTTTCTACCCAACTTCAGAGCAT 59.713 41.667 0.00 0.00 0.00 3.79
5221 5562 3.616956 TCTACCCAACTTCAGAGCATG 57.383 47.619 0.00 0.00 0.00 4.06
5222 5563 2.237143 TCTACCCAACTTCAGAGCATGG 59.763 50.000 0.00 0.00 34.53 3.66
5223 5564 0.773644 ACCCAACTTCAGAGCATGGT 59.226 50.000 0.00 0.00 33.48 3.55
5224 5565 1.145738 ACCCAACTTCAGAGCATGGTT 59.854 47.619 0.00 0.00 33.48 3.67
5225 5566 2.375174 ACCCAACTTCAGAGCATGGTTA 59.625 45.455 0.00 0.00 33.48 2.85
5226 5567 3.181434 ACCCAACTTCAGAGCATGGTTAA 60.181 43.478 0.00 0.00 33.48 2.01
5227 5568 4.019174 CCCAACTTCAGAGCATGGTTAAT 58.981 43.478 0.00 0.00 33.48 1.40
5228 5569 5.192927 CCCAACTTCAGAGCATGGTTAATA 58.807 41.667 0.00 0.00 33.48 0.98
5229 5570 5.652014 CCCAACTTCAGAGCATGGTTAATAA 59.348 40.000 0.00 0.00 33.48 1.40
5230 5571 6.322201 CCCAACTTCAGAGCATGGTTAATAAT 59.678 38.462 0.00 0.00 33.48 1.28
5231 5572 7.502226 CCCAACTTCAGAGCATGGTTAATAATA 59.498 37.037 0.00 0.00 33.48 0.98
5232 5573 9.071276 CCAACTTCAGAGCATGGTTAATAATAT 57.929 33.333 0.00 0.00 31.70 1.28
5235 5576 9.950496 ACTTCAGAGCATGGTTAATAATATAGG 57.050 33.333 0.00 0.00 0.00 2.57
5236 5577 8.792830 TTCAGAGCATGGTTAATAATATAGGC 57.207 34.615 0.00 0.00 0.00 3.93
5237 5578 7.917003 TCAGAGCATGGTTAATAATATAGGCA 58.083 34.615 0.00 0.00 0.00 4.75
5238 5579 8.043113 TCAGAGCATGGTTAATAATATAGGCAG 58.957 37.037 0.00 0.00 0.00 4.85
5239 5580 7.826252 CAGAGCATGGTTAATAATATAGGCAGT 59.174 37.037 0.00 0.00 0.00 4.40
5240 5581 8.386264 AGAGCATGGTTAATAATATAGGCAGTT 58.614 33.333 0.00 0.00 0.00 3.16
5241 5582 8.340618 AGCATGGTTAATAATATAGGCAGTTG 57.659 34.615 0.00 0.00 0.00 3.16
5242 5583 7.029563 GCATGGTTAATAATATAGGCAGTTGC 58.970 38.462 0.00 0.00 41.14 4.17
5243 5584 7.094205 GCATGGTTAATAATATAGGCAGTTGCT 60.094 37.037 3.88 0.00 41.70 3.91
5244 5585 7.744087 TGGTTAATAATATAGGCAGTTGCTG 57.256 36.000 3.88 0.00 41.70 4.41
5245 5586 6.714810 TGGTTAATAATATAGGCAGTTGCTGG 59.285 38.462 3.88 0.00 41.70 4.85
5253 5594 2.330254 GCAGTTGCTGGCTGTAACA 58.670 52.632 22.84 0.00 42.52 2.41
5254 5595 0.883833 GCAGTTGCTGGCTGTAACAT 59.116 50.000 22.84 9.01 42.52 2.71
5255 5596 1.401931 GCAGTTGCTGGCTGTAACATG 60.402 52.381 22.84 18.25 42.52 3.21
5256 5597 1.881973 CAGTTGCTGGCTGTAACATGT 59.118 47.619 22.84 0.00 42.52 3.21
5257 5598 2.294233 CAGTTGCTGGCTGTAACATGTT 59.706 45.455 22.84 16.68 42.52 2.71
5258 5599 2.294233 AGTTGCTGGCTGTAACATGTTG 59.706 45.455 21.42 5.69 42.52 3.33
5259 5600 0.597568 TGCTGGCTGTAACATGTTGC 59.402 50.000 21.42 19.93 0.00 4.17
5260 5601 0.109132 GCTGGCTGTAACATGTTGCC 60.109 55.000 24.51 24.51 43.49 4.52
5276 5617 6.747125 CATGTTGCCATGTTATTTATAGCCA 58.253 36.000 0.00 0.00 42.92 4.75
5277 5618 6.782082 TGTTGCCATGTTATTTATAGCCAA 57.218 33.333 0.00 0.00 0.00 4.52
5278 5619 7.358770 TGTTGCCATGTTATTTATAGCCAAT 57.641 32.000 0.00 0.00 0.00 3.16
5279 5620 7.208777 TGTTGCCATGTTATTTATAGCCAATG 58.791 34.615 0.00 0.00 0.00 2.82
5280 5621 6.975196 TGCCATGTTATTTATAGCCAATGT 57.025 33.333 0.00 0.00 0.00 2.71
5281 5622 8.356657 GTTGCCATGTTATTTATAGCCAATGTA 58.643 33.333 0.00 0.00 0.00 2.29
5282 5623 8.470657 TGCCATGTTATTTATAGCCAATGTAA 57.529 30.769 0.00 0.00 0.00 2.41
5283 5624 8.918116 TGCCATGTTATTTATAGCCAATGTAAA 58.082 29.630 0.00 0.00 0.00 2.01
5284 5625 9.757227 GCCATGTTATTTATAGCCAATGTAAAA 57.243 29.630 0.00 0.00 29.56 1.52
5287 5628 9.981114 ATGTTATTTATAGCCAATGTAAAAGCC 57.019 29.630 0.00 0.00 29.56 4.35
5288 5629 8.972127 TGTTATTTATAGCCAATGTAAAAGCCA 58.028 29.630 0.00 0.00 29.56 4.75
5289 5630 9.810545 GTTATTTATAGCCAATGTAAAAGCCAA 57.189 29.630 0.00 0.00 29.56 4.52
5290 5631 9.810545 TTATTTATAGCCAATGTAAAAGCCAAC 57.189 29.630 0.00 0.00 29.56 3.77
5291 5632 6.842437 TTATAGCCAATGTAAAAGCCAACA 57.158 33.333 0.00 0.00 0.00 3.33
5292 5633 3.385193 AGCCAATGTAAAAGCCAACAC 57.615 42.857 0.00 0.00 0.00 3.32
5293 5634 2.058057 GCCAATGTAAAAGCCAACACG 58.942 47.619 0.00 0.00 0.00 4.49
5294 5635 2.544903 GCCAATGTAAAAGCCAACACGT 60.545 45.455 0.00 0.00 0.00 4.49
5295 5636 3.304794 GCCAATGTAAAAGCCAACACGTA 60.305 43.478 0.00 0.00 0.00 3.57
5296 5637 4.617298 GCCAATGTAAAAGCCAACACGTAT 60.617 41.667 0.00 0.00 0.00 3.06
5297 5638 5.392165 GCCAATGTAAAAGCCAACACGTATA 60.392 40.000 0.00 0.00 0.00 1.47
5298 5639 6.613233 CCAATGTAAAAGCCAACACGTATAA 58.387 36.000 0.00 0.00 0.00 0.98
5299 5640 7.254852 CCAATGTAAAAGCCAACACGTATAAT 58.745 34.615 0.00 0.00 0.00 1.28
5300 5641 8.399425 CCAATGTAAAAGCCAACACGTATAATA 58.601 33.333 0.00 0.00 0.00 0.98
5301 5642 9.433317 CAATGTAAAAGCCAACACGTATAATAG 57.567 33.333 0.00 0.00 0.00 1.73
5302 5643 7.007313 TGTAAAAGCCAACACGTATAATAGC 57.993 36.000 0.00 0.00 0.00 2.97
5303 5644 6.819649 TGTAAAAGCCAACACGTATAATAGCT 59.180 34.615 0.00 0.00 0.00 3.32
5304 5645 5.734855 AAAGCCAACACGTATAATAGCTG 57.265 39.130 0.00 0.00 0.00 4.24
5305 5646 3.728845 AGCCAACACGTATAATAGCTGG 58.271 45.455 0.00 0.00 0.00 4.85
5306 5647 2.223377 GCCAACACGTATAATAGCTGGC 59.777 50.000 0.00 0.67 41.14 4.85
5307 5648 3.728845 CCAACACGTATAATAGCTGGCT 58.271 45.455 0.00 0.00 0.00 4.75
5308 5649 4.798263 GCCAACACGTATAATAGCTGGCTA 60.798 45.833 8.11 4.72 43.79 3.93
5309 5650 5.479306 CCAACACGTATAATAGCTGGCTAT 58.521 41.667 9.06 9.06 40.63 2.97
5310 5651 6.627243 CCAACACGTATAATAGCTGGCTATA 58.373 40.000 14.41 5.27 38.20 1.31
5311 5652 7.094631 CCAACACGTATAATAGCTGGCTATAA 58.905 38.462 14.41 2.72 38.20 0.98
5312 5653 7.275779 CCAACACGTATAATAGCTGGCTATAAG 59.724 40.741 14.41 5.65 38.20 1.73
5313 5654 7.698506 ACACGTATAATAGCTGGCTATAAGA 57.301 36.000 14.41 5.23 38.20 2.10
5314 5655 8.118976 ACACGTATAATAGCTGGCTATAAGAA 57.881 34.615 14.41 3.32 38.20 2.52
5315 5656 8.582437 ACACGTATAATAGCTGGCTATAAGAAA 58.418 33.333 14.41 1.26 38.20 2.52
5316 5657 9.077674 CACGTATAATAGCTGGCTATAAGAAAG 57.922 37.037 14.41 8.29 38.20 2.62
5317 5658 8.804204 ACGTATAATAGCTGGCTATAAGAAAGT 58.196 33.333 14.41 8.79 38.20 2.66
5340 5681 8.644318 AGTATTACTTTGTCAACGTATGATCC 57.356 34.615 3.03 0.00 40.97 3.36
5341 5682 8.255206 AGTATTACTTTGTCAACGTATGATCCA 58.745 33.333 3.03 0.00 40.97 3.41
5342 5683 9.042008 GTATTACTTTGTCAACGTATGATCCAT 57.958 33.333 3.03 0.00 40.97 3.41
5343 5684 7.534085 TTACTTTGTCAACGTATGATCCATC 57.466 36.000 3.03 0.00 40.97 3.51
5344 5685 5.487433 ACTTTGTCAACGTATGATCCATCA 58.513 37.500 0.00 0.00 40.97 3.07
5346 5687 6.258727 ACTTTGTCAACGTATGATCCATCATC 59.741 38.462 5.29 0.00 43.72 2.92
5347 5688 4.631131 TGTCAACGTATGATCCATCATCC 58.369 43.478 5.29 0.00 43.72 3.51
5348 5689 4.100808 TGTCAACGTATGATCCATCATCCA 59.899 41.667 5.29 0.00 43.72 3.41
5349 5690 5.221702 TGTCAACGTATGATCCATCATCCAT 60.222 40.000 5.29 0.00 43.72 3.41
5350 5691 5.702670 GTCAACGTATGATCCATCATCCATT 59.297 40.000 5.29 0.00 43.72 3.16
5351 5692 5.934043 TCAACGTATGATCCATCATCCATTC 59.066 40.000 5.29 0.00 43.72 2.67
5352 5693 5.752036 ACGTATGATCCATCATCCATTCT 57.248 39.130 5.29 0.00 43.72 2.40
5353 5694 5.728471 ACGTATGATCCATCATCCATTCTC 58.272 41.667 5.29 0.00 43.72 2.87
5354 5695 5.246883 ACGTATGATCCATCATCCATTCTCA 59.753 40.000 5.29 0.00 43.72 3.27
5355 5696 5.579904 CGTATGATCCATCATCCATTCTCAC 59.420 44.000 5.29 0.00 43.72 3.51
5356 5697 5.578157 ATGATCCATCATCCATTCTCACA 57.422 39.130 0.00 0.00 43.72 3.58
5357 5698 5.376756 TGATCCATCATCCATTCTCACAA 57.623 39.130 0.00 0.00 0.00 3.33
5358 5699 5.757988 TGATCCATCATCCATTCTCACAAA 58.242 37.500 0.00 0.00 0.00 2.83
5359 5700 5.826208 TGATCCATCATCCATTCTCACAAAG 59.174 40.000 0.00 0.00 0.00 2.77
5360 5701 5.183530 TCCATCATCCATTCTCACAAAGT 57.816 39.130 0.00 0.00 0.00 2.66
5361 5702 5.573219 TCCATCATCCATTCTCACAAAGTT 58.427 37.500 0.00 0.00 0.00 2.66
5362 5703 6.012113 TCCATCATCCATTCTCACAAAGTTT 58.988 36.000 0.00 0.00 0.00 2.66
5363 5704 6.151648 TCCATCATCCATTCTCACAAAGTTTC 59.848 38.462 0.00 0.00 0.00 2.78
5364 5705 6.152323 CCATCATCCATTCTCACAAAGTTTCT 59.848 38.462 0.00 0.00 0.00 2.52
5365 5706 7.309621 CCATCATCCATTCTCACAAAGTTTCTT 60.310 37.037 0.00 0.00 0.00 2.52
5366 5707 6.973843 TCATCCATTCTCACAAAGTTTCTTG 58.026 36.000 0.00 0.00 0.00 3.02
5367 5708 6.772233 TCATCCATTCTCACAAAGTTTCTTGA 59.228 34.615 0.00 0.00 0.00 3.02
5368 5709 7.285172 TCATCCATTCTCACAAAGTTTCTTGAA 59.715 33.333 0.00 0.00 0.00 2.69
5369 5710 7.031226 TCCATTCTCACAAAGTTTCTTGAAG 57.969 36.000 0.00 0.00 0.00 3.02
5370 5711 5.689068 CCATTCTCACAAAGTTTCTTGAAGC 59.311 40.000 0.00 0.00 0.00 3.86
5371 5712 6.460676 CCATTCTCACAAAGTTTCTTGAAGCT 60.461 38.462 0.00 0.00 0.00 3.74
5372 5713 5.741388 TCTCACAAAGTTTCTTGAAGCTC 57.259 39.130 0.48 0.00 0.00 4.09
5373 5714 4.271049 TCTCACAAAGTTTCTTGAAGCTCG 59.729 41.667 0.48 0.00 0.00 5.03
5374 5715 3.938963 TCACAAAGTTTCTTGAAGCTCGT 59.061 39.130 0.48 0.00 0.00 4.18
5375 5716 4.031028 CACAAAGTTTCTTGAAGCTCGTG 58.969 43.478 11.90 11.90 0.00 4.35
5376 5717 3.038710 CAAAGTTTCTTGAAGCTCGTGC 58.961 45.455 0.07 0.07 40.05 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 172 1.616865 TCTTCTCGTCGTTGAATGGGT 59.383 47.619 0.00 0.00 0.00 4.51
194 195 1.207791 CCTACTTCATGGACCCTGCT 58.792 55.000 0.00 0.00 0.00 4.24
506 510 2.669878 CCATCAAGGTTGTTGGGGG 58.330 57.895 10.77 0.00 41.93 5.40
549 562 4.619760 TCAACTTCAACGAGCTAACGTATG 59.380 41.667 0.39 3.11 45.83 2.39
583 596 0.909610 TCCTCCCGAACTCATTGGCT 60.910 55.000 0.00 0.00 0.00 4.75
729 742 0.391597 AGAGAGCGACCGGACAAAAA 59.608 50.000 9.46 0.00 0.00 1.94
748 761 2.184322 GGTCGAGCGATGGAGCAA 59.816 61.111 10.05 0.00 40.15 3.91
785 798 7.066781 ACATTTTCCCTCAAAGAAAGAACCTA 58.933 34.615 0.00 0.00 34.84 3.08
808 821 2.945008 CAACAGAAGAAGCCTGACAACA 59.055 45.455 0.00 0.00 35.69 3.33
809 822 2.291741 CCAACAGAAGAAGCCTGACAAC 59.708 50.000 0.00 0.00 35.69 3.32
811 824 1.768275 TCCAACAGAAGAAGCCTGACA 59.232 47.619 0.00 0.00 35.69 3.58
812 825 2.550830 TCCAACAGAAGAAGCCTGAC 57.449 50.000 0.00 0.00 35.69 3.51
813 826 3.117888 ACTTTCCAACAGAAGAAGCCTGA 60.118 43.478 0.00 0.00 35.40 3.86
814 827 3.217626 ACTTTCCAACAGAAGAAGCCTG 58.782 45.455 0.00 0.00 35.40 4.85
815 828 3.584733 ACTTTCCAACAGAAGAAGCCT 57.415 42.857 0.00 0.00 35.40 4.58
817 830 3.067320 AGCAACTTTCCAACAGAAGAAGC 59.933 43.478 0.00 0.00 35.40 3.86
818 831 4.907879 AGCAACTTTCCAACAGAAGAAG 57.092 40.909 0.00 0.00 35.40 2.85
819 832 5.221048 GCTTAGCAACTTTCCAACAGAAGAA 60.221 40.000 0.00 0.00 35.40 2.52
820 833 4.275936 GCTTAGCAACTTTCCAACAGAAGA 59.724 41.667 0.00 0.00 35.40 2.87
922 965 1.071071 TCCTCCACGACAACGGAAAAT 59.929 47.619 0.00 0.00 44.46 1.82
943 990 0.035343 AGTCCGACTCCATCTCGACA 60.035 55.000 0.00 0.00 32.65 4.35
947 994 2.022240 GCCCAGTCCGACTCCATCTC 62.022 65.000 0.00 0.00 0.00 2.75
1021 1068 4.202535 TGGTTTTTCTTCCCCCTAGACTTC 60.203 45.833 0.00 0.00 0.00 3.01
1452 1499 1.153229 GATTGGGAGTACGGTGCCC 60.153 63.158 8.17 8.17 42.38 5.36
1562 1610 0.036388 GTGAGCGAAGAACATCCCCA 60.036 55.000 0.00 0.00 0.00 4.96
1578 1626 5.185454 AGCATTTCATCGAACATAAGGTGA 58.815 37.500 0.00 0.00 0.00 4.02
1601 1649 2.159156 ACGAGCGGCATTACACTAATGA 60.159 45.455 1.45 0.00 46.52 2.57
1608 1656 1.996898 CAAACTACGAGCGGCATTACA 59.003 47.619 1.45 0.00 0.00 2.41
1616 1664 0.163788 CAACCAGCAAACTACGAGCG 59.836 55.000 0.00 0.00 0.00 5.03
1691 1740 0.249398 AGTGGGTATGTCCGAGCAAC 59.751 55.000 0.00 0.00 37.00 4.17
1803 1856 2.614057 GCAAGCGCAAGATACCTTACAT 59.386 45.455 11.47 0.00 43.02 2.29
1820 1873 6.681777 AGGAATGTTAAAAGCTTACTGCAAG 58.318 36.000 0.00 0.00 45.94 4.01
1821 1874 6.648879 AGGAATGTTAAAAGCTTACTGCAA 57.351 33.333 0.00 0.00 45.94 4.08
1822 1875 6.648879 AAGGAATGTTAAAAGCTTACTGCA 57.351 33.333 0.00 0.00 45.94 4.41
1823 1876 7.946655 AAAAGGAATGTTAAAAGCTTACTGC 57.053 32.000 0.00 0.00 43.29 4.40
1829 1882 9.692749 GTAAGCTAAAAAGGAATGTTAAAAGCT 57.307 29.630 0.00 0.00 38.16 3.74
1838 1891 7.326063 CGGAAACAAGTAAGCTAAAAAGGAATG 59.674 37.037 0.00 0.00 0.00 2.67
1965 2019 4.080469 TGGTACAAACCTCCACTAACAACA 60.080 41.667 0.00 0.00 46.91 3.33
2222 2354 4.248859 CATTCTAGACCCACTGTTCACTG 58.751 47.826 0.00 0.00 0.00 3.66
2232 2364 8.588472 CATATGTCATCTTACATTCTAGACCCA 58.412 37.037 0.00 0.00 40.52 4.51
2356 2494 7.684529 AGAATCTCAAGAGACTAATTTGGTGT 58.315 34.615 1.20 0.00 40.75 4.16
2464 2602 8.574737 GTTCTAGGTCTGTTCTAAGTCAAACTA 58.425 37.037 0.00 0.00 0.00 2.24
2481 2619 9.841880 GTTCCAAAATATTTGAAGTTCTAGGTC 57.158 33.333 0.39 0.00 0.00 3.85
2720 3025 6.159988 CACACAGTGGAAAAGTGGTTTAAAA 58.840 36.000 5.31 0.00 37.58 1.52
2758 3066 8.598202 TTACAGGATACCAGACATTTGTACTA 57.402 34.615 0.00 0.00 37.17 1.82
2799 3107 3.446873 ACAGGCAAACATCTCAACAAACA 59.553 39.130 0.00 0.00 0.00 2.83
2843 3151 8.013667 AGGCCTAAAGGATATCTATTCGGATAT 58.986 37.037 1.29 0.00 40.39 1.63
2867 3175 0.306533 CCACACGAAACCGAACAAGG 59.693 55.000 0.00 0.00 37.30 3.61
2868 3176 1.292061 TCCACACGAAACCGAACAAG 58.708 50.000 0.00 0.00 0.00 3.16
2869 3177 1.868498 GATCCACACGAAACCGAACAA 59.132 47.619 0.00 0.00 0.00 2.83
2870 3178 1.504359 GATCCACACGAAACCGAACA 58.496 50.000 0.00 0.00 0.00 3.18
2871 3179 0.794473 GGATCCACACGAAACCGAAC 59.206 55.000 6.95 0.00 0.00 3.95
2872 3180 0.668096 CGGATCCACACGAAACCGAA 60.668 55.000 13.41 0.00 42.96 4.30
2873 3181 1.080366 CGGATCCACACGAAACCGA 60.080 57.895 13.41 0.00 42.96 4.69
2874 3182 1.076533 CTCGGATCCACACGAAACCG 61.077 60.000 13.41 0.00 42.23 4.44
2875 3183 0.037605 ACTCGGATCCACACGAAACC 60.038 55.000 13.41 0.00 38.79 3.27
2876 3184 1.068474 CACTCGGATCCACACGAAAC 58.932 55.000 13.41 0.00 38.79 2.78
2877 3185 0.037697 CCACTCGGATCCACACGAAA 60.038 55.000 13.41 0.00 38.79 3.46
2878 3186 0.896479 TCCACTCGGATCCACACGAA 60.896 55.000 13.41 0.00 38.79 3.85
2879 3187 1.303806 TCCACTCGGATCCACACGA 60.304 57.895 13.41 1.88 35.91 4.35
2880 3188 3.284336 TCCACTCGGATCCACACG 58.716 61.111 13.41 0.00 35.91 4.49
2889 3197 0.328258 AACCCCTTCAATCCACTCGG 59.672 55.000 0.00 0.00 0.00 4.63
2890 3198 1.812571 CAAACCCCTTCAATCCACTCG 59.187 52.381 0.00 0.00 0.00 4.18
2891 3199 3.084786 CTCAAACCCCTTCAATCCACTC 58.915 50.000 0.00 0.00 0.00 3.51
2892 3200 2.225117 CCTCAAACCCCTTCAATCCACT 60.225 50.000 0.00 0.00 0.00 4.00
2893 3201 2.171003 CCTCAAACCCCTTCAATCCAC 58.829 52.381 0.00 0.00 0.00 4.02
2894 3202 1.077005 CCCTCAAACCCCTTCAATCCA 59.923 52.381 0.00 0.00 0.00 3.41
2895 3203 1.619704 CCCCTCAAACCCCTTCAATCC 60.620 57.143 0.00 0.00 0.00 3.01
2896 3204 1.619704 CCCCCTCAAACCCCTTCAATC 60.620 57.143 0.00 0.00 0.00 2.67
2897 3205 0.413434 CCCCCTCAAACCCCTTCAAT 59.587 55.000 0.00 0.00 0.00 2.57
2898 3206 0.703056 TCCCCCTCAAACCCCTTCAA 60.703 55.000 0.00 0.00 0.00 2.69
2899 3207 0.479589 ATCCCCCTCAAACCCCTTCA 60.480 55.000 0.00 0.00 0.00 3.02
2900 3208 0.710588 AATCCCCCTCAAACCCCTTC 59.289 55.000 0.00 0.00 0.00 3.46
2901 3209 1.176182 AAATCCCCCTCAAACCCCTT 58.824 50.000 0.00 0.00 0.00 3.95
2902 3210 2.084121 TAAATCCCCCTCAAACCCCT 57.916 50.000 0.00 0.00 0.00 4.79
2903 3211 2.835764 GTTTAAATCCCCCTCAAACCCC 59.164 50.000 0.00 0.00 0.00 4.95
2904 3212 2.835764 GGTTTAAATCCCCCTCAAACCC 59.164 50.000 3.66 0.00 41.38 4.11
2905 3213 3.767673 GAGGTTTAAATCCCCCTCAAACC 59.232 47.826 14.63 6.45 45.48 3.27
2906 3214 4.673968 AGAGGTTTAAATCCCCCTCAAAC 58.326 43.478 19.38 0.00 44.85 2.93
2907 3215 5.348259 AAGAGGTTTAAATCCCCCTCAAA 57.652 39.130 19.38 0.00 44.85 2.69
2908 3216 6.668133 ATAAGAGGTTTAAATCCCCCTCAA 57.332 37.500 19.38 10.74 44.85 3.02
2909 3217 6.668133 AATAAGAGGTTTAAATCCCCCTCA 57.332 37.500 19.38 5.60 44.85 3.86
2910 3218 7.813331 ACTAATAAGAGGTTTAAATCCCCCTC 58.187 38.462 12.53 12.53 43.14 4.30
2911 3219 7.407918 TGACTAATAAGAGGTTTAAATCCCCCT 59.592 37.037 0.00 0.00 0.00 4.79
2912 3220 7.580007 TGACTAATAAGAGGTTTAAATCCCCC 58.420 38.462 0.00 0.00 0.00 5.40
2913 3221 9.470399 TTTGACTAATAAGAGGTTTAAATCCCC 57.530 33.333 0.00 0.00 0.00 4.81
2949 3257 0.262876 GGAGGGGATTGGCAAGGATT 59.737 55.000 5.96 0.00 0.00 3.01
2950 3258 0.925720 TGGAGGGGATTGGCAAGGAT 60.926 55.000 5.96 0.00 0.00 3.24
2951 3259 1.145900 TTGGAGGGGATTGGCAAGGA 61.146 55.000 5.96 0.00 0.00 3.36
2952 3260 0.031817 ATTGGAGGGGATTGGCAAGG 60.032 55.000 5.96 0.00 0.00 3.61
2953 3261 1.406903 GATTGGAGGGGATTGGCAAG 58.593 55.000 5.96 0.00 0.00 4.01
2954 3262 0.032217 GGATTGGAGGGGATTGGCAA 60.032 55.000 0.68 0.68 0.00 4.52
2955 3263 0.925720 AGGATTGGAGGGGATTGGCA 60.926 55.000 0.00 0.00 0.00 4.92
2956 3264 0.178978 GAGGATTGGAGGGGATTGGC 60.179 60.000 0.00 0.00 0.00 4.52
2957 3265 1.527457 AGAGGATTGGAGGGGATTGG 58.473 55.000 0.00 0.00 0.00 3.16
2958 3266 2.423947 CCAAGAGGATTGGAGGGGATTG 60.424 54.545 0.12 0.00 42.06 2.67
2959 3267 1.855599 CCAAGAGGATTGGAGGGGATT 59.144 52.381 0.12 0.00 42.06 3.01
2960 3268 1.527457 CCAAGAGGATTGGAGGGGAT 58.473 55.000 0.12 0.00 42.06 3.85
2961 3269 0.624500 CCCAAGAGGATTGGAGGGGA 60.625 60.000 8.20 0.00 42.06 4.81
2962 3270 1.925888 CCCAAGAGGATTGGAGGGG 59.074 63.158 8.20 0.00 42.06 4.79
2963 3271 0.624500 TCCCCAAGAGGATTGGAGGG 60.625 60.000 8.20 2.36 42.06 4.30
2964 3272 0.842635 CTCCCCAAGAGGATTGGAGG 59.157 60.000 8.20 7.77 42.06 4.30
2965 3273 1.767681 CTCTCCCCAAGAGGATTGGAG 59.232 57.143 8.20 0.00 46.73 3.86
2966 3274 1.885049 CTCTCCCCAAGAGGATTGGA 58.115 55.000 8.20 0.00 46.73 3.53
2974 3282 2.116238 CGGTTAATCCTCTCCCCAAGA 58.884 52.381 0.00 0.00 0.00 3.02
2975 3283 2.116238 TCGGTTAATCCTCTCCCCAAG 58.884 52.381 0.00 0.00 0.00 3.61
2976 3284 2.237893 GTTCGGTTAATCCTCTCCCCAA 59.762 50.000 0.00 0.00 0.00 4.12
2977 3285 1.835531 GTTCGGTTAATCCTCTCCCCA 59.164 52.381 0.00 0.00 0.00 4.96
2978 3286 1.835531 TGTTCGGTTAATCCTCTCCCC 59.164 52.381 0.00 0.00 0.00 4.81
2979 3287 3.532542 CTTGTTCGGTTAATCCTCTCCC 58.467 50.000 0.00 0.00 0.00 4.30
2980 3288 3.532542 CCTTGTTCGGTTAATCCTCTCC 58.467 50.000 0.00 0.00 0.00 3.71
2981 3289 2.937149 GCCTTGTTCGGTTAATCCTCTC 59.063 50.000 0.00 0.00 0.00 3.20
2982 3290 2.355818 GGCCTTGTTCGGTTAATCCTCT 60.356 50.000 0.00 0.00 0.00 3.69
2983 3291 2.014857 GGCCTTGTTCGGTTAATCCTC 58.985 52.381 0.00 0.00 0.00 3.71
2984 3292 1.633945 AGGCCTTGTTCGGTTAATCCT 59.366 47.619 0.00 0.00 0.00 3.24
2985 3293 2.124277 AGGCCTTGTTCGGTTAATCC 57.876 50.000 0.00 0.00 0.00 3.01
2986 3294 3.626217 CCTAAGGCCTTGTTCGGTTAATC 59.374 47.826 28.77 0.00 0.00 1.75
2987 3295 3.264964 TCCTAAGGCCTTGTTCGGTTAAT 59.735 43.478 28.77 0.00 0.00 1.40
2988 3296 2.638855 TCCTAAGGCCTTGTTCGGTTAA 59.361 45.455 28.77 3.22 0.00 2.01
2989 3297 2.027837 GTCCTAAGGCCTTGTTCGGTTA 60.028 50.000 28.77 4.02 0.00 2.85
2990 3298 1.061546 TCCTAAGGCCTTGTTCGGTT 58.938 50.000 28.77 0.57 0.00 4.44
2991 3299 0.323957 GTCCTAAGGCCTTGTTCGGT 59.676 55.000 28.77 1.45 0.00 4.69
2992 3300 0.323629 TGTCCTAAGGCCTTGTTCGG 59.676 55.000 28.77 20.65 0.00 4.30
2993 3301 2.280628 GATGTCCTAAGGCCTTGTTCG 58.719 52.381 28.77 12.86 0.00 3.95
2994 3302 2.093658 TCGATGTCCTAAGGCCTTGTTC 60.094 50.000 28.77 15.12 0.00 3.18
2995 3303 1.906574 TCGATGTCCTAAGGCCTTGTT 59.093 47.619 28.77 4.09 0.00 2.83
2996 3304 1.482593 CTCGATGTCCTAAGGCCTTGT 59.517 52.381 28.77 4.97 0.00 3.16
2997 3305 1.757118 TCTCGATGTCCTAAGGCCTTG 59.243 52.381 28.77 16.94 0.00 3.61
2998 3306 1.757699 GTCTCGATGTCCTAAGGCCTT 59.242 52.381 24.18 24.18 0.00 4.35
2999 3307 1.342076 TGTCTCGATGTCCTAAGGCCT 60.342 52.381 0.00 0.00 0.00 5.19
3000 3308 1.067821 CTGTCTCGATGTCCTAAGGCC 59.932 57.143 0.00 0.00 0.00 5.19
3001 3309 1.751924 ACTGTCTCGATGTCCTAAGGC 59.248 52.381 0.00 0.00 0.00 4.35
3002 3310 3.444034 TGAACTGTCTCGATGTCCTAAGG 59.556 47.826 0.00 0.00 0.00 2.69
3003 3311 4.703645 TGAACTGTCTCGATGTCCTAAG 57.296 45.455 0.00 0.00 0.00 2.18
3004 3312 5.394224 GGATTGAACTGTCTCGATGTCCTAA 60.394 44.000 0.00 0.00 0.00 2.69
3005 3313 4.098044 GGATTGAACTGTCTCGATGTCCTA 59.902 45.833 0.00 0.00 0.00 2.94
3006 3314 3.118956 GGATTGAACTGTCTCGATGTCCT 60.119 47.826 0.00 0.00 0.00 3.85
3007 3315 3.190874 GGATTGAACTGTCTCGATGTCC 58.809 50.000 0.00 0.00 0.00 4.02
3008 3316 3.614616 GTGGATTGAACTGTCTCGATGTC 59.385 47.826 0.00 0.00 0.00 3.06
3013 3321 1.721389 CGTGTGGATTGAACTGTCTCG 59.279 52.381 0.00 0.00 0.00 4.04
3049 3357 4.766373 ACAACACATGCTCCATAACAATGA 59.234 37.500 0.00 0.00 0.00 2.57
3191 3499 9.650539 ATCTGTTTATATCCAGAAATCGATCTG 57.349 33.333 8.76 8.76 45.19 2.90
3192 3500 9.650539 CATCTGTTTATATCCAGAAATCGATCT 57.349 33.333 0.00 0.00 40.81 2.75
3286 3602 6.073276 TCCAGACTGTTCAACATTCATTTACG 60.073 38.462 10.28 0.00 31.10 3.18
3347 3663 5.996513 TCCCAAAAGCGTACTGTGTTATTAA 59.003 36.000 0.00 0.00 0.00 1.40
3374 3690 7.614494 CCCCTTGTTGTGATAAAAAGAATGAT 58.386 34.615 0.00 0.00 0.00 2.45
3475 3791 5.665459 AGTAATGGTTGTGTAGATCAGAGC 58.335 41.667 0.00 0.00 0.00 4.09
3495 3815 7.987750 TTATCATTGCACAAGTACCAAAGTA 57.012 32.000 0.00 0.00 0.00 2.24
3527 3847 3.885901 TCCGAATTGGAAACACATGTTCA 59.114 39.130 0.00 0.00 46.38 3.18
3528 3848 4.497473 TCCGAATTGGAAACACATGTTC 57.503 40.909 0.00 0.00 46.38 3.18
3593 3915 1.070289 AGTAGGTATTTAGGCCAGCGC 59.930 52.381 5.01 0.00 0.00 5.92
3595 3917 4.417426 TGAAGTAGGTATTTAGGCCAGC 57.583 45.455 5.01 0.00 0.00 4.85
3678 4000 4.251268 AGCCAAATTCCTAACGACTGTAC 58.749 43.478 0.00 0.00 0.00 2.90
3859 4182 4.016444 TCAAAGAACACCAAAGCAAGAGT 58.984 39.130 0.00 0.00 0.00 3.24
3891 4214 8.267183 TCAGCAATAGAATAGTTCCATCAAGAA 58.733 33.333 0.00 0.00 0.00 2.52
3900 4223 8.417884 AGAGTTAGGTCAGCAATAGAATAGTTC 58.582 37.037 0.00 0.00 0.00 3.01
3902 4225 7.561722 TGAGAGTTAGGTCAGCAATAGAATAGT 59.438 37.037 0.00 0.00 0.00 2.12
3903 4226 7.946207 TGAGAGTTAGGTCAGCAATAGAATAG 58.054 38.462 0.00 0.00 0.00 1.73
3904 4227 7.898014 TGAGAGTTAGGTCAGCAATAGAATA 57.102 36.000 0.00 0.00 0.00 1.75
3997 4320 1.923356 TTTTTGGAGGGATGTGCTCC 58.077 50.000 0.00 0.00 44.11 4.70
4161 4484 3.064987 CTCTAGGTGGTCGCACGGG 62.065 68.421 0.00 0.00 0.00 5.28
4172 4495 0.707616 AGGTGTCTCCAGCTCTAGGT 59.292 55.000 0.00 0.00 46.14 3.08
4173 4496 1.110442 CAGGTGTCTCCAGCTCTAGG 58.890 60.000 0.00 0.00 46.14 3.02
4235 4558 5.256474 AGTAGATACCAAAAGCAAGCACAT 58.744 37.500 0.00 0.00 0.00 3.21
4382 4709 1.202521 TGTCGCTGAACTGAGAAAGCA 60.203 47.619 6.60 0.00 35.33 3.91
4391 4718 0.745845 GCCATCCATGTCGCTGAACT 60.746 55.000 0.00 0.00 0.00 3.01
4462 4789 6.671779 AGTGGTGGTAGTAGTAGACTAGTAGT 59.328 42.308 1.37 1.37 41.47 2.73
4465 4792 6.900186 TCTAGTGGTGGTAGTAGTAGACTAGT 59.100 42.308 0.00 0.00 41.47 2.57
4469 4796 6.238703 GCATTCTAGTGGTGGTAGTAGTAGAC 60.239 46.154 0.00 0.00 0.00 2.59
4470 4797 5.826737 GCATTCTAGTGGTGGTAGTAGTAGA 59.173 44.000 0.00 0.00 0.00 2.59
4612 4939 1.445716 GCCTGCTGTGCTCATCATCC 61.446 60.000 0.00 0.00 0.00 3.51
4783 5111 1.902508 ACTGTAGATCCCACACACAGG 59.097 52.381 5.17 0.00 40.69 4.00
4785 5113 2.299013 GTGACTGTAGATCCCACACACA 59.701 50.000 11.14 5.33 0.00 3.72
4786 5114 2.353803 GGTGACTGTAGATCCCACACAC 60.354 54.545 0.00 8.93 0.00 3.82
4809 5142 4.533707 CCAGAATGCAGAATAGATAGGGGA 59.466 45.833 0.00 0.00 31.97 4.81
4814 5147 3.912528 AGGCCCAGAATGCAGAATAGATA 59.087 43.478 0.00 0.00 31.97 1.98
4875 5208 3.170717 AGTATCAACGTGGGAAAGAGGA 58.829 45.455 0.00 0.00 0.00 3.71
4880 5213 3.965379 TGCTAGTATCAACGTGGGAAA 57.035 42.857 0.00 0.00 0.00 3.13
4918 5251 7.713942 GTGACTACCTATATTTTTGGGGTACAG 59.286 40.741 0.00 0.00 0.00 2.74
4941 5274 1.955080 TGCATTGCACTGTGAATGTGA 59.045 42.857 22.20 13.38 37.60 3.58
5078 5419 7.444183 TGGAATAGTTGAGAACAAAGTAACCTG 59.556 37.037 0.00 0.00 37.77 4.00
5096 5437 5.376625 TCTGTTTGCTGAAACTGGAATAGT 58.623 37.500 6.68 0.00 41.87 2.12
5097 5438 5.106396 CCTCTGTTTGCTGAAACTGGAATAG 60.106 44.000 6.68 0.00 41.87 1.73
5098 5439 4.761739 CCTCTGTTTGCTGAAACTGGAATA 59.238 41.667 6.68 0.00 41.87 1.75
5099 5440 3.571401 CCTCTGTTTGCTGAAACTGGAAT 59.429 43.478 6.68 0.00 41.87 3.01
5100 5441 2.951642 CCTCTGTTTGCTGAAACTGGAA 59.048 45.455 6.68 0.00 41.87 3.53
5101 5442 2.575532 CCTCTGTTTGCTGAAACTGGA 58.424 47.619 6.68 2.88 41.87 3.86
5102 5443 1.000938 GCCTCTGTTTGCTGAAACTGG 60.001 52.381 6.68 5.26 41.87 4.00
5103 5444 1.952296 AGCCTCTGTTTGCTGAAACTG 59.048 47.619 0.00 0.00 41.87 3.16
5104 5445 2.355010 AGCCTCTGTTTGCTGAAACT 57.645 45.000 0.00 0.00 41.87 2.66
5110 5451 1.602888 CTGCCAGCCTCTGTTTGCT 60.603 57.895 0.00 0.00 38.67 3.91
5111 5452 2.633509 CCTGCCAGCCTCTGTTTGC 61.634 63.158 0.00 0.00 0.00 3.68
5112 5453 1.228367 ACCTGCCAGCCTCTGTTTG 60.228 57.895 0.00 0.00 0.00 2.93
5113 5454 1.073897 GACCTGCCAGCCTCTGTTT 59.926 57.895 0.00 0.00 0.00 2.83
5114 5455 1.708993 TTGACCTGCCAGCCTCTGTT 61.709 55.000 0.00 0.00 0.00 3.16
5115 5456 1.708993 TTTGACCTGCCAGCCTCTGT 61.709 55.000 0.00 0.00 0.00 3.41
5116 5457 0.959372 CTTTGACCTGCCAGCCTCTG 60.959 60.000 0.00 0.00 0.00 3.35
5117 5458 1.377994 CTTTGACCTGCCAGCCTCT 59.622 57.895 0.00 0.00 0.00 3.69
5118 5459 2.338785 GCTTTGACCTGCCAGCCTC 61.339 63.158 0.00 0.00 0.00 4.70
5119 5460 2.282745 GCTTTGACCTGCCAGCCT 60.283 61.111 0.00 0.00 0.00 4.58
5124 5465 2.399356 GCTACGGCTTTGACCTGCC 61.399 63.158 0.00 0.00 45.25 4.85
5125 5466 1.026718 ATGCTACGGCTTTGACCTGC 61.027 55.000 0.00 0.00 39.59 4.85
5126 5467 0.729116 CATGCTACGGCTTTGACCTG 59.271 55.000 0.00 0.00 39.59 4.00
5127 5468 1.026718 GCATGCTACGGCTTTGACCT 61.027 55.000 11.37 0.00 39.59 3.85
5128 5469 1.429423 GCATGCTACGGCTTTGACC 59.571 57.895 11.37 0.00 39.59 4.02
5129 5470 1.060937 CGCATGCTACGGCTTTGAC 59.939 57.895 17.13 0.00 39.59 3.18
5130 5471 2.749865 GCGCATGCTACGGCTTTGA 61.750 57.895 17.13 0.00 39.59 2.69
5131 5472 2.277501 GCGCATGCTACGGCTTTG 60.278 61.111 17.13 0.00 39.59 2.77
5136 5477 2.916502 TTACAGGGCGCATGCTACGG 62.917 60.000 17.13 8.74 42.25 4.02
5137 5478 0.880278 ATTACAGGGCGCATGCTACG 60.880 55.000 17.13 0.81 42.25 3.51
5138 5479 1.308998 AATTACAGGGCGCATGCTAC 58.691 50.000 17.13 7.62 42.25 3.58
5139 5480 2.051334 AAATTACAGGGCGCATGCTA 57.949 45.000 17.13 0.00 42.25 3.49
5140 5481 1.135024 CAAAATTACAGGGCGCATGCT 60.135 47.619 17.13 0.00 42.25 3.79
5141 5482 1.135141 TCAAAATTACAGGGCGCATGC 60.135 47.619 10.83 7.91 41.71 4.06
5142 5483 2.937469 TCAAAATTACAGGGCGCATG 57.063 45.000 10.83 10.35 0.00 4.06
5143 5484 3.446873 TGATTCAAAATTACAGGGCGCAT 59.553 39.130 10.83 0.00 0.00 4.73
5144 5485 2.822561 TGATTCAAAATTACAGGGCGCA 59.177 40.909 10.83 0.00 0.00 6.09
5145 5486 3.438360 CTGATTCAAAATTACAGGGCGC 58.562 45.455 0.00 0.00 0.00 6.53
5146 5487 4.032703 CCTGATTCAAAATTACAGGGCG 57.967 45.455 0.00 0.00 42.77 6.13
5149 5490 7.393234 TGTCTTACCCTGATTCAAAATTACAGG 59.607 37.037 0.00 0.00 45.09 4.00
5150 5491 8.335532 TGTCTTACCCTGATTCAAAATTACAG 57.664 34.615 0.00 0.00 0.00 2.74
5151 5492 8.573035 GTTGTCTTACCCTGATTCAAAATTACA 58.427 33.333 0.00 0.00 0.00 2.41
5152 5493 8.793592 AGTTGTCTTACCCTGATTCAAAATTAC 58.206 33.333 0.00 0.00 0.00 1.89
5153 5494 8.934023 AGTTGTCTTACCCTGATTCAAAATTA 57.066 30.769 0.00 0.00 0.00 1.40
5154 5495 7.839680 AGTTGTCTTACCCTGATTCAAAATT 57.160 32.000 0.00 0.00 0.00 1.82
5155 5496 7.839680 AAGTTGTCTTACCCTGATTCAAAAT 57.160 32.000 0.00 0.00 31.46 1.82
5156 5497 7.654022 AAAGTTGTCTTACCCTGATTCAAAA 57.346 32.000 0.00 0.00 33.09 2.44
5157 5498 7.040686 GCTAAAGTTGTCTTACCCTGATTCAAA 60.041 37.037 0.00 0.00 33.09 2.69
5158 5499 6.430000 GCTAAAGTTGTCTTACCCTGATTCAA 59.570 38.462 0.00 0.00 33.09 2.69
5159 5500 5.938125 GCTAAAGTTGTCTTACCCTGATTCA 59.062 40.000 0.00 0.00 33.09 2.57
5160 5501 6.174049 AGCTAAAGTTGTCTTACCCTGATTC 58.826 40.000 0.00 0.00 33.09 2.52
5161 5502 6.128138 AGCTAAAGTTGTCTTACCCTGATT 57.872 37.500 0.00 0.00 33.09 2.57
5162 5503 5.763876 AGCTAAAGTTGTCTTACCCTGAT 57.236 39.130 0.00 0.00 33.09 2.90
5163 5504 5.337330 GCTAGCTAAAGTTGTCTTACCCTGA 60.337 44.000 7.70 0.00 33.09 3.86
5164 5505 4.870991 GCTAGCTAAAGTTGTCTTACCCTG 59.129 45.833 7.70 0.00 33.09 4.45
5165 5506 4.530946 TGCTAGCTAAAGTTGTCTTACCCT 59.469 41.667 17.23 0.00 33.09 4.34
5166 5507 4.828829 TGCTAGCTAAAGTTGTCTTACCC 58.171 43.478 17.23 0.00 33.09 3.69
5167 5508 4.330347 GCTGCTAGCTAAAGTTGTCTTACC 59.670 45.833 17.23 0.00 38.45 2.85
5168 5509 4.330347 GGCTGCTAGCTAAAGTTGTCTTAC 59.670 45.833 17.23 0.00 41.99 2.34
5169 5510 4.223032 AGGCTGCTAGCTAAAGTTGTCTTA 59.777 41.667 17.23 0.00 41.99 2.10
5170 5511 3.008485 AGGCTGCTAGCTAAAGTTGTCTT 59.992 43.478 17.23 0.00 41.99 3.01
5171 5512 2.569404 AGGCTGCTAGCTAAAGTTGTCT 59.431 45.455 17.23 1.58 41.99 3.41
5172 5513 2.933260 GAGGCTGCTAGCTAAAGTTGTC 59.067 50.000 17.23 0.53 41.99 3.18
5173 5514 2.569404 AGAGGCTGCTAGCTAAAGTTGT 59.431 45.455 17.23 0.00 41.99 3.32
5174 5515 3.258971 AGAGGCTGCTAGCTAAAGTTG 57.741 47.619 17.23 0.00 41.99 3.16
5175 5516 3.990959 AAGAGGCTGCTAGCTAAAGTT 57.009 42.857 17.23 0.00 41.99 2.66
5176 5517 3.990959 AAAGAGGCTGCTAGCTAAAGT 57.009 42.857 17.23 0.00 41.99 2.66
5177 5518 4.512484 AGAAAAGAGGCTGCTAGCTAAAG 58.488 43.478 17.23 6.21 41.99 1.85
5178 5519 4.559862 AGAAAAGAGGCTGCTAGCTAAA 57.440 40.909 17.23 0.00 41.99 1.85
5179 5520 4.559862 AAGAAAAGAGGCTGCTAGCTAA 57.440 40.909 17.23 0.00 41.99 3.09
5180 5521 4.223923 AGAAAGAAAAGAGGCTGCTAGCTA 59.776 41.667 17.23 1.31 41.99 3.32
5181 5522 3.008923 AGAAAGAAAAGAGGCTGCTAGCT 59.991 43.478 17.23 0.00 41.99 3.32
5182 5523 3.342719 AGAAAGAAAAGAGGCTGCTAGC 58.657 45.455 8.10 8.10 41.46 3.42
5183 5524 4.873259 GGTAGAAAGAAAAGAGGCTGCTAG 59.127 45.833 0.00 0.00 0.00 3.42
5184 5525 4.323562 GGGTAGAAAGAAAAGAGGCTGCTA 60.324 45.833 0.00 0.00 0.00 3.49
5185 5526 3.560239 GGGTAGAAAGAAAAGAGGCTGCT 60.560 47.826 0.00 0.00 0.00 4.24
5186 5527 2.750166 GGGTAGAAAGAAAAGAGGCTGC 59.250 50.000 0.00 0.00 0.00 5.25
5187 5528 4.021102 TGGGTAGAAAGAAAAGAGGCTG 57.979 45.455 0.00 0.00 0.00 4.85
5188 5529 4.104897 AGTTGGGTAGAAAGAAAAGAGGCT 59.895 41.667 0.00 0.00 0.00 4.58
5189 5530 4.399219 AGTTGGGTAGAAAGAAAAGAGGC 58.601 43.478 0.00 0.00 0.00 4.70
5190 5531 6.062095 TGAAGTTGGGTAGAAAGAAAAGAGG 58.938 40.000 0.00 0.00 0.00 3.69
5191 5532 6.992715 TCTGAAGTTGGGTAGAAAGAAAAGAG 59.007 38.462 0.00 0.00 0.00 2.85
5192 5533 6.895782 TCTGAAGTTGGGTAGAAAGAAAAGA 58.104 36.000 0.00 0.00 0.00 2.52
5193 5534 6.293680 GCTCTGAAGTTGGGTAGAAAGAAAAG 60.294 42.308 0.00 0.00 0.00 2.27
5194 5535 5.531287 GCTCTGAAGTTGGGTAGAAAGAAAA 59.469 40.000 0.00 0.00 0.00 2.29
5195 5536 5.063880 GCTCTGAAGTTGGGTAGAAAGAAA 58.936 41.667 0.00 0.00 0.00 2.52
5196 5537 4.102524 TGCTCTGAAGTTGGGTAGAAAGAA 59.897 41.667 0.00 0.00 0.00 2.52
5197 5538 3.646162 TGCTCTGAAGTTGGGTAGAAAGA 59.354 43.478 0.00 0.00 0.00 2.52
5198 5539 4.008074 TGCTCTGAAGTTGGGTAGAAAG 57.992 45.455 0.00 0.00 0.00 2.62
5199 5540 4.326826 CATGCTCTGAAGTTGGGTAGAAA 58.673 43.478 0.00 0.00 0.00 2.52
5200 5541 3.307691 CCATGCTCTGAAGTTGGGTAGAA 60.308 47.826 0.00 0.00 0.00 2.10
5201 5542 2.237143 CCATGCTCTGAAGTTGGGTAGA 59.763 50.000 0.00 0.00 0.00 2.59
5202 5543 2.026822 ACCATGCTCTGAAGTTGGGTAG 60.027 50.000 0.00 0.00 34.20 3.18
5203 5544 1.985159 ACCATGCTCTGAAGTTGGGTA 59.015 47.619 0.00 0.00 34.20 3.69
5204 5545 0.773644 ACCATGCTCTGAAGTTGGGT 59.226 50.000 0.00 0.00 34.20 4.51
5205 5546 1.915141 AACCATGCTCTGAAGTTGGG 58.085 50.000 0.00 0.00 34.20 4.12
5206 5547 6.757897 TTATTAACCATGCTCTGAAGTTGG 57.242 37.500 0.00 0.00 35.33 3.77
5209 5550 9.950496 CCTATATTATTAACCATGCTCTGAAGT 57.050 33.333 0.00 0.00 0.00 3.01
5210 5551 8.887717 GCCTATATTATTAACCATGCTCTGAAG 58.112 37.037 0.00 0.00 0.00 3.02
5211 5552 8.382405 TGCCTATATTATTAACCATGCTCTGAA 58.618 33.333 0.00 0.00 0.00 3.02
5212 5553 7.917003 TGCCTATATTATTAACCATGCTCTGA 58.083 34.615 0.00 0.00 0.00 3.27
5213 5554 7.826252 ACTGCCTATATTATTAACCATGCTCTG 59.174 37.037 0.00 0.00 0.00 3.35
5214 5555 7.922382 ACTGCCTATATTATTAACCATGCTCT 58.078 34.615 0.00 0.00 0.00 4.09
5215 5556 8.454106 CAACTGCCTATATTATTAACCATGCTC 58.546 37.037 0.00 0.00 0.00 4.26
5216 5557 7.094205 GCAACTGCCTATATTATTAACCATGCT 60.094 37.037 0.00 0.00 34.31 3.79
5217 5558 7.029563 GCAACTGCCTATATTATTAACCATGC 58.970 38.462 0.00 0.00 34.31 4.06
5218 5559 8.239314 CAGCAACTGCCTATATTATTAACCATG 58.761 37.037 0.00 0.00 43.38 3.66
5219 5560 7.394359 CCAGCAACTGCCTATATTATTAACCAT 59.606 37.037 0.00 0.00 43.38 3.55
5220 5561 6.714810 CCAGCAACTGCCTATATTATTAACCA 59.285 38.462 0.00 0.00 43.38 3.67
5221 5562 6.349363 GCCAGCAACTGCCTATATTATTAACC 60.349 42.308 0.00 0.00 43.38 2.85
5222 5563 6.431234 AGCCAGCAACTGCCTATATTATTAAC 59.569 38.462 0.00 0.00 43.38 2.01
5223 5564 6.430925 CAGCCAGCAACTGCCTATATTATTAA 59.569 38.462 0.00 0.00 43.38 1.40
5224 5565 5.939883 CAGCCAGCAACTGCCTATATTATTA 59.060 40.000 0.00 0.00 43.38 0.98
5225 5566 4.763793 CAGCCAGCAACTGCCTATATTATT 59.236 41.667 0.00 0.00 43.38 1.40
5226 5567 4.202503 ACAGCCAGCAACTGCCTATATTAT 60.203 41.667 0.00 0.00 43.38 1.28
5227 5568 3.136443 ACAGCCAGCAACTGCCTATATTA 59.864 43.478 0.00 0.00 43.38 0.98
5228 5569 2.092212 ACAGCCAGCAACTGCCTATATT 60.092 45.455 0.00 0.00 43.38 1.28
5229 5570 1.492176 ACAGCCAGCAACTGCCTATAT 59.508 47.619 0.00 0.00 43.38 0.86
5230 5571 0.911769 ACAGCCAGCAACTGCCTATA 59.088 50.000 0.00 0.00 43.38 1.31
5231 5572 0.911769 TACAGCCAGCAACTGCCTAT 59.088 50.000 0.00 0.00 43.38 2.57
5232 5573 0.690192 TTACAGCCAGCAACTGCCTA 59.310 50.000 0.00 0.00 43.38 3.93
5233 5574 0.890996 GTTACAGCCAGCAACTGCCT 60.891 55.000 0.00 0.00 43.38 4.75
5234 5575 1.172180 TGTTACAGCCAGCAACTGCC 61.172 55.000 0.00 0.00 43.38 4.85
5235 5576 0.883833 ATGTTACAGCCAGCAACTGC 59.116 50.000 0.00 0.00 38.79 4.40
5236 5577 1.881973 ACATGTTACAGCCAGCAACTG 59.118 47.619 0.00 0.00 41.08 3.16
5237 5578 2.276732 ACATGTTACAGCCAGCAACT 57.723 45.000 0.00 0.00 0.00 3.16
5238 5579 2.664916 CAACATGTTACAGCCAGCAAC 58.335 47.619 11.53 0.00 0.00 4.17
5239 5580 1.000385 GCAACATGTTACAGCCAGCAA 60.000 47.619 11.53 0.00 0.00 3.91
5240 5581 0.597568 GCAACATGTTACAGCCAGCA 59.402 50.000 11.53 0.00 0.00 4.41
5241 5582 0.109132 GGCAACATGTTACAGCCAGC 60.109 55.000 25.68 16.76 44.59 4.85
5255 5596 7.209475 ACATTGGCTATAAATAACATGGCAAC 58.791 34.615 0.00 0.00 41.38 4.17
5256 5597 7.358770 ACATTGGCTATAAATAACATGGCAA 57.641 32.000 0.00 0.00 42.40 4.52
5257 5598 6.975196 ACATTGGCTATAAATAACATGGCA 57.025 33.333 0.00 0.00 31.98 4.92
5258 5599 9.757227 TTTTACATTGGCTATAAATAACATGGC 57.243 29.630 0.00 0.00 0.00 4.40
5261 5602 9.981114 GGCTTTTACATTGGCTATAAATAACAT 57.019 29.630 0.00 0.00 0.00 2.71
5262 5603 8.972127 TGGCTTTTACATTGGCTATAAATAACA 58.028 29.630 0.00 0.00 0.00 2.41
5263 5604 9.810545 TTGGCTTTTACATTGGCTATAAATAAC 57.189 29.630 0.00 0.00 0.00 1.89
5264 5605 9.810545 GTTGGCTTTTACATTGGCTATAAATAA 57.189 29.630 0.00 0.00 0.00 1.40
5265 5606 8.972127 TGTTGGCTTTTACATTGGCTATAAATA 58.028 29.630 0.00 0.00 0.00 1.40
5266 5607 7.763985 GTGTTGGCTTTTACATTGGCTATAAAT 59.236 33.333 0.00 0.00 0.00 1.40
5267 5608 7.093992 GTGTTGGCTTTTACATTGGCTATAAA 58.906 34.615 0.00 0.00 0.00 1.40
5268 5609 6.623986 CGTGTTGGCTTTTACATTGGCTATAA 60.624 38.462 0.00 0.00 0.00 0.98
5269 5610 5.163703 CGTGTTGGCTTTTACATTGGCTATA 60.164 40.000 0.00 0.00 0.00 1.31
5270 5611 4.380444 CGTGTTGGCTTTTACATTGGCTAT 60.380 41.667 0.00 0.00 0.00 2.97
5271 5612 3.057876 CGTGTTGGCTTTTACATTGGCTA 60.058 43.478 0.00 0.00 0.00 3.93
5272 5613 2.288152 CGTGTTGGCTTTTACATTGGCT 60.288 45.455 0.00 0.00 0.00 4.75
5273 5614 2.058057 CGTGTTGGCTTTTACATTGGC 58.942 47.619 0.00 0.00 0.00 4.52
5274 5615 3.363341 ACGTGTTGGCTTTTACATTGG 57.637 42.857 0.00 0.00 0.00 3.16
5275 5616 9.433317 CTATTATACGTGTTGGCTTTTACATTG 57.567 33.333 0.00 0.00 0.00 2.82
5276 5617 8.126700 GCTATTATACGTGTTGGCTTTTACATT 58.873 33.333 0.00 0.00 0.00 2.71
5277 5618 7.497909 AGCTATTATACGTGTTGGCTTTTACAT 59.502 33.333 0.00 0.00 0.00 2.29
5278 5619 6.819649 AGCTATTATACGTGTTGGCTTTTACA 59.180 34.615 0.00 0.00 0.00 2.41
5279 5620 7.123830 CAGCTATTATACGTGTTGGCTTTTAC 58.876 38.462 0.00 0.00 0.00 2.01
5280 5621 6.259167 CCAGCTATTATACGTGTTGGCTTTTA 59.741 38.462 0.00 0.00 0.00 1.52
5281 5622 5.065988 CCAGCTATTATACGTGTTGGCTTTT 59.934 40.000 0.00 0.00 0.00 2.27
5282 5623 4.574828 CCAGCTATTATACGTGTTGGCTTT 59.425 41.667 0.00 0.00 0.00 3.51
5283 5624 4.127171 CCAGCTATTATACGTGTTGGCTT 58.873 43.478 0.00 0.00 0.00 4.35
5284 5625 3.728845 CCAGCTATTATACGTGTTGGCT 58.271 45.455 0.00 0.00 0.00 4.75
5285 5626 2.223377 GCCAGCTATTATACGTGTTGGC 59.777 50.000 12.19 12.19 46.13 4.52
5286 5627 3.728845 AGCCAGCTATTATACGTGTTGG 58.271 45.455 0.00 0.00 34.58 3.77
5287 5628 8.027189 TCTTATAGCCAGCTATTATACGTGTTG 58.973 37.037 16.83 0.00 39.65 3.33
5288 5629 8.118976 TCTTATAGCCAGCTATTATACGTGTT 57.881 34.615 16.83 0.00 39.65 3.32
5289 5630 7.698506 TCTTATAGCCAGCTATTATACGTGT 57.301 36.000 16.83 0.00 39.65 4.49
5290 5631 8.981724 TTTCTTATAGCCAGCTATTATACGTG 57.018 34.615 16.83 0.00 39.65 4.49
5291 5632 8.804204 ACTTTCTTATAGCCAGCTATTATACGT 58.196 33.333 16.83 0.00 39.65 3.57
5300 5641 9.331282 CAAAGTAATACTTTCTTATAGCCAGCT 57.669 33.333 14.84 0.00 44.47 4.24
5301 5642 9.110502 ACAAAGTAATACTTTCTTATAGCCAGC 57.889 33.333 14.84 0.00 44.47 4.85
5311 5652 9.701098 TCATACGTTGACAAAGTAATACTTTCT 57.299 29.630 14.84 4.45 44.47 2.52
5314 5655 9.095065 GGATCATACGTTGACAAAGTAATACTT 57.905 33.333 16.25 0.00 37.30 2.24
5315 5656 8.255206 TGGATCATACGTTGACAAAGTAATACT 58.745 33.333 16.25 4.11 37.11 2.12
5316 5657 8.415192 TGGATCATACGTTGACAAAGTAATAC 57.585 34.615 16.25 8.95 37.11 1.89
5317 5658 9.256477 GATGGATCATACGTTGACAAAGTAATA 57.744 33.333 16.25 9.01 37.11 0.98
5318 5659 7.768582 TGATGGATCATACGTTGACAAAGTAAT 59.231 33.333 16.25 7.83 37.11 1.89
5319 5660 7.100409 TGATGGATCATACGTTGACAAAGTAA 58.900 34.615 16.25 3.60 37.11 2.24
5320 5661 6.635755 TGATGGATCATACGTTGACAAAGTA 58.364 36.000 14.94 14.94 37.11 2.24
5321 5662 5.487433 TGATGGATCATACGTTGACAAAGT 58.513 37.500 11.51 11.51 37.11 2.66
5322 5663 6.293081 GGATGATGGATCATACGTTGACAAAG 60.293 42.308 0.00 0.00 46.84 2.77
5323 5664 5.527214 GGATGATGGATCATACGTTGACAAA 59.473 40.000 0.00 0.00 46.84 2.83
5324 5665 5.056480 GGATGATGGATCATACGTTGACAA 58.944 41.667 0.00 0.00 46.84 3.18
5325 5666 4.631131 GGATGATGGATCATACGTTGACA 58.369 43.478 0.00 0.00 46.84 3.58
5332 5673 6.470278 TGTGAGAATGGATGATGGATCATAC 58.530 40.000 5.03 5.03 46.84 2.39
5333 5674 6.691255 TGTGAGAATGGATGATGGATCATA 57.309 37.500 2.02 0.00 46.84 2.15
5335 5676 5.376756 TTGTGAGAATGGATGATGGATCA 57.623 39.130 0.00 0.00 41.70 2.92
5336 5677 5.826737 ACTTTGTGAGAATGGATGATGGATC 59.173 40.000 0.00 0.00 0.00 3.36
5337 5678 5.763355 ACTTTGTGAGAATGGATGATGGAT 58.237 37.500 0.00 0.00 0.00 3.41
5338 5679 5.183530 ACTTTGTGAGAATGGATGATGGA 57.816 39.130 0.00 0.00 0.00 3.41
5339 5680 5.909621 AACTTTGTGAGAATGGATGATGG 57.090 39.130 0.00 0.00 0.00 3.51
5340 5681 7.154435 AGAAACTTTGTGAGAATGGATGATG 57.846 36.000 0.00 0.00 0.00 3.07
5341 5682 7.449395 TCAAGAAACTTTGTGAGAATGGATGAT 59.551 33.333 0.00 0.00 0.00 2.45
5342 5683 6.772233 TCAAGAAACTTTGTGAGAATGGATGA 59.228 34.615 0.00 0.00 0.00 2.92
5343 5684 6.973843 TCAAGAAACTTTGTGAGAATGGATG 58.026 36.000 0.00 0.00 0.00 3.51
5344 5685 7.587037 TTCAAGAAACTTTGTGAGAATGGAT 57.413 32.000 0.00 0.00 0.00 3.41
5345 5686 6.460123 GCTTCAAGAAACTTTGTGAGAATGGA 60.460 38.462 0.00 0.00 0.00 3.41
5346 5687 5.689068 GCTTCAAGAAACTTTGTGAGAATGG 59.311 40.000 0.00 0.00 0.00 3.16
5347 5688 6.501781 AGCTTCAAGAAACTTTGTGAGAATG 58.498 36.000 0.00 0.00 0.00 2.67
5348 5689 6.512415 CGAGCTTCAAGAAACTTTGTGAGAAT 60.512 38.462 0.00 0.00 0.00 2.40
5349 5690 5.220662 CGAGCTTCAAGAAACTTTGTGAGAA 60.221 40.000 0.00 0.00 0.00 2.87
5350 5691 4.271049 CGAGCTTCAAGAAACTTTGTGAGA 59.729 41.667 0.00 0.00 0.00 3.27
5351 5692 4.034510 ACGAGCTTCAAGAAACTTTGTGAG 59.965 41.667 0.00 0.00 0.00 3.51
5352 5693 3.938963 ACGAGCTTCAAGAAACTTTGTGA 59.061 39.130 0.00 0.00 0.00 3.58
5353 5694 4.031028 CACGAGCTTCAAGAAACTTTGTG 58.969 43.478 0.00 5.66 0.00 3.33
5354 5695 3.487544 GCACGAGCTTCAAGAAACTTTGT 60.488 43.478 0.00 0.00 37.91 2.83
5355 5696 3.038710 GCACGAGCTTCAAGAAACTTTG 58.961 45.455 0.00 0.00 37.91 2.77
5356 5697 3.340337 GCACGAGCTTCAAGAAACTTT 57.660 42.857 0.00 0.00 37.91 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.