Multiple sequence alignment - TraesCS4D01G078300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G078300 chr4D 100.000 1952 0 0 524 2475 52497843 52495892 0.000000e+00 3605.0
1 TraesCS4D01G078300 chr4D 100.000 199 0 0 1 199 52498366 52498168 3.890000e-98 368.0
2 TraesCS4D01G078300 chr4D 89.116 294 31 1 1195 1488 52748851 52748559 5.030000e-97 364.0
3 TraesCS4D01G078300 chr4D 79.266 545 89 15 1934 2471 52753912 52753385 2.340000e-95 359.0
4 TraesCS4D01G078300 chr4D 100.000 61 0 0 755 815 123337613 123337553 2.010000e-21 113.0
5 TraesCS4D01G078300 chr4D 100.000 61 0 0 755 815 123552068 123552008 2.010000e-21 113.0
6 TraesCS4D01G078300 chr4A 95.522 871 33 4 1606 2472 544173902 544174770 0.000000e+00 1387.0
7 TraesCS4D01G078300 chr4A 91.118 653 38 10 961 1608 544172251 544172888 0.000000e+00 867.0
8 TraesCS4D01G078300 chr4A 85.784 408 42 7 1099 1503 544067641 544068035 3.810000e-113 418.0
9 TraesCS4D01G078300 chr4A 87.500 208 16 3 897 1103 544062094 544062292 5.320000e-57 231.0
10 TraesCS4D01G078300 chr4A 84.264 197 22 3 1 188 544073134 544073330 1.510000e-42 183.0
11 TraesCS4D01G078300 chr4A 97.260 73 2 0 849 921 544172183 544172255 9.290000e-25 124.0
12 TraesCS4D01G078300 chr4A 95.455 44 2 0 609 652 544169148 544169191 1.230000e-08 71.3
13 TraesCS4D01G078300 chr4A 82.540 63 11 0 1286 1348 527004297 527004359 3.440000e-04 56.5
14 TraesCS4D01G078300 chr4B 95.309 874 33 5 1606 2475 77003577 77002708 0.000000e+00 1380.0
15 TraesCS4D01G078300 chr4B 87.867 750 42 15 863 1608 77007805 77007101 0.000000e+00 835.0
16 TraesCS4D01G078300 chr4B 89.353 479 40 5 863 1339 77509492 77509023 2.120000e-165 592.0
17 TraesCS4D01G078300 chr4B 78.431 561 103 15 1921 2475 77514145 77513597 1.410000e-92 350.0
18 TraesCS4D01G078300 chr4B 93.333 75 5 0 681 755 209256245 209256319 7.240000e-21 111.0
19 TraesCS4D01G078300 chr5B 94.667 75 4 0 681 755 130626921 130626995 1.560000e-22 117.0
20 TraesCS4D01G078300 chr5B 98.485 66 1 0 755 820 701110510 701110575 1.560000e-22 117.0
21 TraesCS4D01G078300 chr3B 94.667 75 4 0 681 755 92217912 92217838 1.560000e-22 117.0
22 TraesCS4D01G078300 chr3B 96.970 33 1 0 101 133 59688005 59688037 3.440000e-04 56.5
23 TraesCS4D01G078300 chr3B 96.970 33 1 0 101 133 59699653 59699685 3.440000e-04 56.5
24 TraesCS4D01G078300 chrUn 100.000 62 0 0 694 755 45125917 45125856 5.590000e-22 115.0
25 TraesCS4D01G078300 chrUn 100.000 62 0 0 694 755 86493111 86493050 5.590000e-22 115.0
26 TraesCS4D01G078300 chrUn 100.000 62 0 0 694 755 186176354 186176415 5.590000e-22 115.0
27 TraesCS4D01G078300 chrUn 100.000 62 0 0 694 755 247552914 247552975 5.590000e-22 115.0
28 TraesCS4D01G078300 chrUn 100.000 62 0 0 694 755 345601413 345601474 5.590000e-22 115.0
29 TraesCS4D01G078300 chrUn 100.000 62 0 0 694 755 400146909 400146970 5.590000e-22 115.0
30 TraesCS4D01G078300 chrUn 100.000 61 0 0 755 815 434805712 434805652 2.010000e-21 113.0
31 TraesCS4D01G078300 chrUn 80.851 141 27 0 1294 1434 54297118 54297258 7.240000e-21 111.0
32 TraesCS4D01G078300 chr6D 100.000 61 0 0 755 815 124519664 124519604 2.010000e-21 113.0
33 TraesCS4D01G078300 chr6D 100.000 61 0 0 755 815 168757232 168757172 2.010000e-21 113.0
34 TraesCS4D01G078300 chr6D 100.000 61 0 0 755 815 458900324 458900264 2.010000e-21 113.0
35 TraesCS4D01G078300 chr6D 100.000 45 0 0 650 694 283162809 283162853 1.580000e-12 84.2
36 TraesCS4D01G078300 chr1D 100.000 61 0 0 755 815 43234859 43234919 2.010000e-21 113.0
37 TraesCS4D01G078300 chr1D 100.000 61 0 0 755 815 269408942 269408882 2.010000e-21 113.0
38 TraesCS4D01G078300 chr7D 100.000 45 0 0 650 694 626655869 626655913 1.580000e-12 84.2
39 TraesCS4D01G078300 chr5D 100.000 45 0 0 650 694 58755158 58755114 1.580000e-12 84.2
40 TraesCS4D01G078300 chr5D 100.000 45 0 0 650 694 562938086 562938130 1.580000e-12 84.2
41 TraesCS4D01G078300 chr3D 100.000 45 0 0 650 694 154735213 154735257 1.580000e-12 84.2
42 TraesCS4D01G078300 chr2D 100.000 45 0 0 650 694 635062010 635061966 1.580000e-12 84.2
43 TraesCS4D01G078300 chr2A 100.000 45 0 0 650 694 750447030 750446986 1.580000e-12 84.2
44 TraesCS4D01G078300 chr1A 100.000 45 0 0 650 694 94551269 94551225 1.580000e-12 84.2
45 TraesCS4D01G078300 chr1A 100.000 45 0 0 650 694 94613718 94613674 1.580000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G078300 chr4D 52495892 52498366 2474 True 1986.500 3605 100.00000 1 2475 2 chr4D.!!$R5 2474
1 TraesCS4D01G078300 chr4D 52753385 52753912 527 True 359.000 359 79.26600 1934 2471 1 chr4D.!!$R2 537
2 TraesCS4D01G078300 chr4A 544169148 544174770 5622 False 612.325 1387 94.83875 609 2472 4 chr4A.!!$F5 1863
3 TraesCS4D01G078300 chr4B 77002708 77007805 5097 True 1107.500 1380 91.58800 863 2475 2 chr4B.!!$R3 1612
4 TraesCS4D01G078300 chr4B 77513597 77514145 548 True 350.000 350 78.43100 1921 2475 1 chr4B.!!$R2 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
781 782 0.03254 GGCCAGGAAACAAAGCACTG 59.967 55.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1597 4564 0.038166 ATCAGTCCCGCATGTTTGGT 59.962 50.0 0.0 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.845781 TTTTAGGCATTTTTGGGTGCA 57.154 38.095 0.00 0.00 43.00 4.57
23 24 3.845781 TTTAGGCATTTTTGGGTGCAA 57.154 38.095 0.00 0.00 43.00 4.08
24 25 3.845781 TTAGGCATTTTTGGGTGCAAA 57.154 38.095 0.00 0.00 43.00 3.68
25 26 1.965935 AGGCATTTTTGGGTGCAAAC 58.034 45.000 0.00 0.00 43.00 2.93
26 27 0.585838 GGCATTTTTGGGTGCAAACG 59.414 50.000 0.00 0.00 43.00 3.60
27 28 1.576356 GCATTTTTGGGTGCAAACGA 58.424 45.000 0.00 0.00 40.94 3.85
28 29 1.260297 GCATTTTTGGGTGCAAACGAC 59.740 47.619 0.00 0.00 40.94 4.34
29 30 2.820330 CATTTTTGGGTGCAAACGACT 58.180 42.857 0.00 0.00 0.00 4.18
30 31 2.285827 TTTTTGGGTGCAAACGACTG 57.714 45.000 0.00 0.00 0.00 3.51
31 32 0.179124 TTTTGGGTGCAAACGACTGC 60.179 50.000 6.55 6.55 42.95 4.40
37 38 3.253955 GCAAACGACTGCACGGAT 58.746 55.556 8.31 0.00 42.17 4.18
38 39 1.132640 GCAAACGACTGCACGGATC 59.867 57.895 8.31 0.00 42.17 3.36
39 40 1.565156 GCAAACGACTGCACGGATCA 61.565 55.000 8.31 0.00 42.17 2.92
40 41 0.163788 CAAACGACTGCACGGATCAC 59.836 55.000 1.59 0.00 37.61 3.06
41 42 0.249699 AAACGACTGCACGGATCACA 60.250 50.000 1.59 0.00 37.61 3.58
42 43 0.249699 AACGACTGCACGGATCACAA 60.250 50.000 1.59 0.00 37.61 3.33
43 44 0.037326 ACGACTGCACGGATCACAAT 60.037 50.000 1.59 0.00 37.61 2.71
44 45 0.371301 CGACTGCACGGATCACAATG 59.629 55.000 0.00 0.00 0.00 2.82
45 46 1.442769 GACTGCACGGATCACAATGT 58.557 50.000 0.00 0.00 0.00 2.71
46 47 1.129251 GACTGCACGGATCACAATGTG 59.871 52.381 7.12 7.12 35.48 3.21
47 48 1.270785 ACTGCACGGATCACAATGTGA 60.271 47.619 19.08 19.08 46.90 3.58
48 49 1.805943 CTGCACGGATCACAATGTGAA 59.194 47.619 20.64 4.11 45.96 3.18
49 50 2.421073 CTGCACGGATCACAATGTGAAT 59.579 45.455 20.64 8.91 45.96 2.57
50 51 2.162008 TGCACGGATCACAATGTGAATG 59.838 45.455 20.64 15.87 45.96 2.67
51 52 2.419673 GCACGGATCACAATGTGAATGA 59.580 45.455 20.64 0.00 45.96 2.57
52 53 3.119884 GCACGGATCACAATGTGAATGAA 60.120 43.478 20.64 0.00 45.96 2.57
53 54 4.439153 GCACGGATCACAATGTGAATGAAT 60.439 41.667 20.64 2.87 45.96 2.57
54 55 5.032220 CACGGATCACAATGTGAATGAATG 58.968 41.667 20.64 11.09 45.96 2.67
55 56 4.096833 ACGGATCACAATGTGAATGAATGG 59.903 41.667 20.64 8.01 45.96 3.16
56 57 4.096833 CGGATCACAATGTGAATGAATGGT 59.903 41.667 20.64 0.46 45.96 3.55
57 58 5.345702 GGATCACAATGTGAATGAATGGTG 58.654 41.667 20.64 0.00 45.96 4.17
58 59 5.125900 GGATCACAATGTGAATGAATGGTGA 59.874 40.000 20.64 0.00 45.96 4.02
59 60 6.350361 GGATCACAATGTGAATGAATGGTGAA 60.350 38.462 20.64 0.00 45.96 3.18
60 61 6.016213 TCACAATGTGAATGAATGGTGAAG 57.984 37.500 14.37 0.00 39.78 3.02
61 62 4.624024 CACAATGTGAATGAATGGTGAAGC 59.376 41.667 7.78 0.00 35.23 3.86
62 63 4.281435 ACAATGTGAATGAATGGTGAAGCA 59.719 37.500 0.00 0.00 0.00 3.91
63 64 5.221481 ACAATGTGAATGAATGGTGAAGCAA 60.221 36.000 0.00 0.00 0.00 3.91
64 65 4.508461 TGTGAATGAATGGTGAAGCAAG 57.492 40.909 0.00 0.00 0.00 4.01
65 66 3.256383 TGTGAATGAATGGTGAAGCAAGG 59.744 43.478 0.00 0.00 0.00 3.61
66 67 2.231964 TGAATGAATGGTGAAGCAAGGC 59.768 45.455 0.00 0.00 0.00 4.35
67 68 2.226962 ATGAATGGTGAAGCAAGGCT 57.773 45.000 0.00 0.00 42.56 4.58
76 77 4.730487 AGCAAGGCTTAGCAGGTG 57.270 55.556 19.03 1.52 33.89 4.00
77 78 1.763770 AGCAAGGCTTAGCAGGTGT 59.236 52.632 19.03 1.19 33.89 4.16
78 79 0.607489 AGCAAGGCTTAGCAGGTGTG 60.607 55.000 19.03 0.00 33.89 3.82
102 103 4.986622 GCCTTGCGAATTTTCAGATAACT 58.013 39.130 0.00 0.00 0.00 2.24
103 104 5.402398 GCCTTGCGAATTTTCAGATAACTT 58.598 37.500 0.00 0.00 0.00 2.66
104 105 5.513141 GCCTTGCGAATTTTCAGATAACTTC 59.487 40.000 0.00 0.00 0.00 3.01
105 106 6.611381 CCTTGCGAATTTTCAGATAACTTCA 58.389 36.000 0.00 0.00 0.00 3.02
106 107 7.253422 CCTTGCGAATTTTCAGATAACTTCAT 58.747 34.615 0.00 0.00 0.00 2.57
107 108 7.430502 CCTTGCGAATTTTCAGATAACTTCATC 59.569 37.037 0.00 0.00 0.00 2.92
108 109 7.376435 TGCGAATTTTCAGATAACTTCATCA 57.624 32.000 0.00 0.00 0.00 3.07
109 110 7.815641 TGCGAATTTTCAGATAACTTCATCAA 58.184 30.769 0.00 0.00 0.00 2.57
110 111 8.461222 TGCGAATTTTCAGATAACTTCATCAAT 58.539 29.630 0.00 0.00 0.00 2.57
111 112 8.951969 GCGAATTTTCAGATAACTTCATCAATC 58.048 33.333 0.00 0.00 0.00 2.67
125 126 7.533426 ACTTCATCAATCTTAAGATGTTGTGC 58.467 34.615 18.61 0.00 41.74 4.57
126 127 6.441093 TCATCAATCTTAAGATGTTGTGCC 57.559 37.500 18.61 0.00 41.74 5.01
127 128 4.944962 TCAATCTTAAGATGTTGTGCCG 57.055 40.909 18.61 1.48 34.49 5.69
128 129 4.574892 TCAATCTTAAGATGTTGTGCCGA 58.425 39.130 18.61 3.57 34.49 5.54
129 130 5.185454 TCAATCTTAAGATGTTGTGCCGAT 58.815 37.500 18.61 0.00 34.49 4.18
130 131 5.647658 TCAATCTTAAGATGTTGTGCCGATT 59.352 36.000 18.61 0.00 34.49 3.34
131 132 5.741388 ATCTTAAGATGTTGTGCCGATTC 57.259 39.130 17.26 0.00 32.68 2.52
132 133 4.574892 TCTTAAGATGTTGTGCCGATTCA 58.425 39.130 0.00 0.00 0.00 2.57
133 134 5.185454 TCTTAAGATGTTGTGCCGATTCAT 58.815 37.500 0.00 0.00 0.00 2.57
134 135 5.294306 TCTTAAGATGTTGTGCCGATTCATC 59.706 40.000 0.00 0.00 36.25 2.92
135 136 2.989909 AGATGTTGTGCCGATTCATCA 58.010 42.857 0.00 0.00 37.80 3.07
136 137 3.548770 AGATGTTGTGCCGATTCATCAT 58.451 40.909 0.00 0.00 37.80 2.45
137 138 3.314357 AGATGTTGTGCCGATTCATCATG 59.686 43.478 0.00 0.00 37.80 3.07
138 139 1.132834 TGTTGTGCCGATTCATCATGC 59.867 47.619 0.00 0.00 0.00 4.06
139 140 1.402968 GTTGTGCCGATTCATCATGCT 59.597 47.619 0.00 0.00 0.00 3.79
140 141 1.302366 TGTGCCGATTCATCATGCTC 58.698 50.000 0.00 0.00 0.00 4.26
141 142 0.234106 GTGCCGATTCATCATGCTCG 59.766 55.000 3.22 3.22 0.00 5.03
142 143 0.179076 TGCCGATTCATCATGCTCGT 60.179 50.000 8.17 0.00 0.00 4.18
143 144 1.068434 TGCCGATTCATCATGCTCGTA 59.932 47.619 8.17 0.00 0.00 3.43
144 145 1.723542 GCCGATTCATCATGCTCGTAG 59.276 52.381 8.17 0.00 0.00 3.51
145 146 2.332104 CCGATTCATCATGCTCGTAGG 58.668 52.381 8.17 0.00 0.00 3.18
146 147 2.029918 CCGATTCATCATGCTCGTAGGA 60.030 50.000 8.17 0.00 0.00 2.94
147 148 3.552890 CCGATTCATCATGCTCGTAGGAA 60.553 47.826 8.17 0.00 0.00 3.36
148 149 4.240888 CGATTCATCATGCTCGTAGGAAT 58.759 43.478 2.27 0.00 0.00 3.01
149 150 5.402398 CGATTCATCATGCTCGTAGGAATA 58.598 41.667 2.27 0.00 0.00 1.75
150 151 5.514559 CGATTCATCATGCTCGTAGGAATAG 59.485 44.000 2.27 0.00 0.00 1.73
151 152 4.790765 TCATCATGCTCGTAGGAATAGG 57.209 45.455 0.00 0.00 0.00 2.57
152 153 3.511540 TCATCATGCTCGTAGGAATAGGG 59.488 47.826 0.00 0.00 0.00 3.53
153 154 2.958818 TCATGCTCGTAGGAATAGGGT 58.041 47.619 0.00 0.00 0.00 4.34
154 155 2.628178 TCATGCTCGTAGGAATAGGGTG 59.372 50.000 0.00 0.00 0.00 4.61
155 156 2.154567 TGCTCGTAGGAATAGGGTGT 57.845 50.000 0.00 0.00 0.00 4.16
156 157 1.754803 TGCTCGTAGGAATAGGGTGTG 59.245 52.381 0.00 0.00 0.00 3.82
157 158 1.538419 GCTCGTAGGAATAGGGTGTGC 60.538 57.143 0.00 0.00 0.00 4.57
158 159 0.742505 TCGTAGGAATAGGGTGTGCG 59.257 55.000 0.00 0.00 0.00 5.34
159 160 0.249322 CGTAGGAATAGGGTGTGCGG 60.249 60.000 0.00 0.00 0.00 5.69
160 161 0.106149 GTAGGAATAGGGTGTGCGGG 59.894 60.000 0.00 0.00 0.00 6.13
161 162 1.692173 TAGGAATAGGGTGTGCGGGC 61.692 60.000 0.00 0.00 0.00 6.13
162 163 2.895372 GAATAGGGTGTGCGGGCG 60.895 66.667 0.00 0.00 0.00 6.13
163 164 3.379865 GAATAGGGTGTGCGGGCGA 62.380 63.158 0.00 0.00 0.00 5.54
164 165 3.385749 AATAGGGTGTGCGGGCGAG 62.386 63.158 0.00 0.00 0.00 5.03
169 170 3.712881 GTGTGCGGGCGAGTGTTC 61.713 66.667 0.00 0.00 0.00 3.18
170 171 4.228567 TGTGCGGGCGAGTGTTCA 62.229 61.111 0.00 0.00 0.00 3.18
171 172 2.742372 GTGCGGGCGAGTGTTCAT 60.742 61.111 0.00 0.00 0.00 2.57
172 173 1.447140 GTGCGGGCGAGTGTTCATA 60.447 57.895 0.00 0.00 0.00 2.15
173 174 1.153647 TGCGGGCGAGTGTTCATAG 60.154 57.895 0.00 0.00 0.00 2.23
174 175 1.141019 GCGGGCGAGTGTTCATAGA 59.859 57.895 0.00 0.00 0.00 1.98
175 176 0.872021 GCGGGCGAGTGTTCATAGAG 60.872 60.000 0.00 0.00 0.00 2.43
176 177 0.738975 CGGGCGAGTGTTCATAGAGA 59.261 55.000 0.00 0.00 0.00 3.10
177 178 1.338337 CGGGCGAGTGTTCATAGAGAT 59.662 52.381 0.00 0.00 0.00 2.75
178 179 2.552743 CGGGCGAGTGTTCATAGAGATA 59.447 50.000 0.00 0.00 0.00 1.98
179 180 3.004419 CGGGCGAGTGTTCATAGAGATAA 59.996 47.826 0.00 0.00 0.00 1.75
180 181 4.551388 GGGCGAGTGTTCATAGAGATAAG 58.449 47.826 0.00 0.00 0.00 1.73
181 182 4.038162 GGGCGAGTGTTCATAGAGATAAGT 59.962 45.833 0.00 0.00 0.00 2.24
182 183 4.979197 GGCGAGTGTTCATAGAGATAAGTG 59.021 45.833 0.00 0.00 0.00 3.16
183 184 4.442733 GCGAGTGTTCATAGAGATAAGTGC 59.557 45.833 0.00 0.00 0.00 4.40
184 185 5.582550 CGAGTGTTCATAGAGATAAGTGCA 58.417 41.667 0.00 0.00 0.00 4.57
185 186 6.212235 CGAGTGTTCATAGAGATAAGTGCAT 58.788 40.000 0.00 0.00 0.00 3.96
186 187 6.143598 CGAGTGTTCATAGAGATAAGTGCATG 59.856 42.308 0.00 0.00 0.00 4.06
187 188 6.882656 AGTGTTCATAGAGATAAGTGCATGT 58.117 36.000 0.00 0.00 0.00 3.21
188 189 8.011844 AGTGTTCATAGAGATAAGTGCATGTA 57.988 34.615 0.00 0.00 0.00 2.29
189 190 7.923344 AGTGTTCATAGAGATAAGTGCATGTAC 59.077 37.037 5.71 5.71 0.00 2.90
190 191 6.918022 TGTTCATAGAGATAAGTGCATGTACG 59.082 38.462 8.36 0.00 0.00 3.67
191 192 6.635030 TCATAGAGATAAGTGCATGTACGT 57.365 37.500 8.36 7.96 0.00 3.57
192 193 6.669278 TCATAGAGATAAGTGCATGTACGTC 58.331 40.000 5.55 7.19 0.00 4.34
193 194 6.486993 TCATAGAGATAAGTGCATGTACGTCT 59.513 38.462 15.34 15.34 0.00 4.18
194 195 7.660208 TCATAGAGATAAGTGCATGTACGTCTA 59.340 37.037 15.37 13.56 0.00 2.59
195 196 6.885952 AGAGATAAGTGCATGTACGTCTAT 57.114 37.500 15.37 11.61 0.00 1.98
196 197 7.981102 AGAGATAAGTGCATGTACGTCTATA 57.019 36.000 15.37 4.90 0.00 1.31
197 198 8.568676 AGAGATAAGTGCATGTACGTCTATAT 57.431 34.615 15.37 9.00 0.00 0.86
198 199 8.454894 AGAGATAAGTGCATGTACGTCTATATG 58.545 37.037 15.37 0.00 0.00 1.78
543 544 2.714259 TGGCGAACCAAGGTTTCTG 58.286 52.632 5.87 1.21 45.37 3.02
544 545 0.106918 TGGCGAACCAAGGTTTCTGT 60.107 50.000 5.87 0.00 45.37 3.41
545 546 1.029681 GGCGAACCAAGGTTTCTGTT 58.970 50.000 5.87 0.00 38.60 3.16
546 547 1.407618 GGCGAACCAAGGTTTCTGTTT 59.592 47.619 5.87 0.00 38.60 2.83
547 548 2.543031 GGCGAACCAAGGTTTCTGTTTC 60.543 50.000 5.87 0.00 38.60 2.78
548 549 2.357952 GCGAACCAAGGTTTCTGTTTCT 59.642 45.455 5.87 0.00 38.60 2.52
549 550 3.562557 GCGAACCAAGGTTTCTGTTTCTA 59.437 43.478 5.87 0.00 38.60 2.10
550 551 4.215613 GCGAACCAAGGTTTCTGTTTCTAT 59.784 41.667 5.87 0.00 38.60 1.98
551 552 5.617087 GCGAACCAAGGTTTCTGTTTCTATC 60.617 44.000 5.87 0.00 38.60 2.08
552 553 5.106673 CGAACCAAGGTTTCTGTTTCTATCC 60.107 44.000 5.87 0.00 38.60 2.59
553 554 4.663334 ACCAAGGTTTCTGTTTCTATCCC 58.337 43.478 0.00 0.00 0.00 3.85
554 555 4.354087 ACCAAGGTTTCTGTTTCTATCCCT 59.646 41.667 0.00 0.00 0.00 4.20
555 556 5.162980 ACCAAGGTTTCTGTTTCTATCCCTT 60.163 40.000 0.00 0.00 0.00 3.95
556 557 6.045106 ACCAAGGTTTCTGTTTCTATCCCTTA 59.955 38.462 0.00 0.00 30.23 2.69
557 558 7.119387 CCAAGGTTTCTGTTTCTATCCCTTAT 58.881 38.462 0.00 0.00 30.23 1.73
558 559 8.272173 CCAAGGTTTCTGTTTCTATCCCTTATA 58.728 37.037 0.00 0.00 30.23 0.98
559 560 9.853177 CAAGGTTTCTGTTTCTATCCCTTATAT 57.147 33.333 0.00 0.00 30.23 0.86
564 565 9.998106 TTTCTGTTTCTATCCCTTATATACAGC 57.002 33.333 0.00 0.00 31.00 4.40
565 566 8.721133 TCTGTTTCTATCCCTTATATACAGCA 57.279 34.615 0.00 0.00 31.00 4.41
566 567 9.326489 TCTGTTTCTATCCCTTATATACAGCAT 57.674 33.333 0.00 0.00 31.00 3.79
572 573 9.147732 TCTATCCCTTATATACAGCATATGTGG 57.852 37.037 4.29 0.00 43.80 4.17
573 574 6.560003 TCCCTTATATACAGCATATGTGGG 57.440 41.667 4.29 0.00 43.80 4.61
574 575 5.428457 TCCCTTATATACAGCATATGTGGGG 59.572 44.000 4.29 6.05 43.80 4.96
575 576 5.191722 CCCTTATATACAGCATATGTGGGGT 59.808 44.000 4.29 0.81 43.80 4.95
576 577 6.115446 CCTTATATACAGCATATGTGGGGTG 58.885 44.000 4.29 0.00 43.80 4.61
577 578 6.296432 CCTTATATACAGCATATGTGGGGTGT 60.296 42.308 4.29 2.87 46.36 4.16
578 579 2.708216 TACAGCATATGTGGGGTGTG 57.292 50.000 4.29 0.00 44.58 3.82
579 580 0.034186 ACAGCATATGTGGGGTGTGG 60.034 55.000 4.29 0.00 43.41 4.17
580 581 0.034186 CAGCATATGTGGGGTGTGGT 60.034 55.000 4.29 0.00 0.00 4.16
581 582 0.034186 AGCATATGTGGGGTGTGGTG 60.034 55.000 4.29 0.00 0.00 4.17
582 583 0.323360 GCATATGTGGGGTGTGGTGT 60.323 55.000 4.29 0.00 0.00 4.16
583 584 1.462616 CATATGTGGGGTGTGGTGTG 58.537 55.000 0.00 0.00 0.00 3.82
584 585 1.072266 ATATGTGGGGTGTGGTGTGT 58.928 50.000 0.00 0.00 0.00 3.72
585 586 0.109532 TATGTGGGGTGTGGTGTGTG 59.890 55.000 0.00 0.00 0.00 3.82
586 587 1.932156 ATGTGGGGTGTGGTGTGTGT 61.932 55.000 0.00 0.00 0.00 3.72
587 588 2.118404 GTGGGGTGTGGTGTGTGTG 61.118 63.158 0.00 0.00 0.00 3.82
588 589 2.274104 GGGGTGTGGTGTGTGTGT 59.726 61.111 0.00 0.00 0.00 3.72
589 590 2.118404 GGGGTGTGGTGTGTGTGTG 61.118 63.158 0.00 0.00 0.00 3.82
590 591 2.118404 GGGTGTGGTGTGTGTGTGG 61.118 63.158 0.00 0.00 0.00 4.17
591 592 1.377987 GGTGTGGTGTGTGTGTGGT 60.378 57.895 0.00 0.00 0.00 4.16
592 593 1.653094 GGTGTGGTGTGTGTGTGGTG 61.653 60.000 0.00 0.00 0.00 4.17
593 594 0.958382 GTGTGGTGTGTGTGTGGTGT 60.958 55.000 0.00 0.00 0.00 4.16
594 595 0.957888 TGTGGTGTGTGTGTGGTGTG 60.958 55.000 0.00 0.00 0.00 3.82
595 596 1.377856 TGGTGTGTGTGTGGTGTGG 60.378 57.895 0.00 0.00 0.00 4.17
596 597 2.118404 GGTGTGTGTGTGGTGTGGG 61.118 63.158 0.00 0.00 0.00 4.61
597 598 2.118404 GTGTGTGTGTGGTGTGGGG 61.118 63.158 0.00 0.00 0.00 4.96
598 599 2.518349 GTGTGTGTGGTGTGGGGG 60.518 66.667 0.00 0.00 0.00 5.40
617 618 2.157989 GGGGAGGGGGAGTATATGTTCT 60.158 54.545 0.00 0.00 0.00 3.01
651 652 9.793259 TTACTTGATCATCTTAACTTTCCTTGT 57.207 29.630 0.00 0.00 0.00 3.16
653 654 9.793259 ACTTGATCATCTTAACTTTCCTTGTAA 57.207 29.630 0.00 0.00 0.00 2.41
695 696 8.718102 TTATTAGGGATGAGACTTTCTTTTCG 57.282 34.615 0.00 0.00 0.00 3.46
696 697 4.891992 AGGGATGAGACTTTCTTTTCGA 57.108 40.909 0.00 0.00 0.00 3.71
697 698 5.228945 AGGGATGAGACTTTCTTTTCGAA 57.771 39.130 0.00 0.00 0.00 3.71
698 699 4.998033 AGGGATGAGACTTTCTTTTCGAAC 59.002 41.667 0.00 0.00 0.00 3.95
699 700 4.755123 GGGATGAGACTTTCTTTTCGAACA 59.245 41.667 0.00 0.00 0.00 3.18
700 701 5.106908 GGGATGAGACTTTCTTTTCGAACAG 60.107 44.000 4.91 4.91 0.00 3.16
701 702 5.696724 GGATGAGACTTTCTTTTCGAACAGA 59.303 40.000 9.92 9.92 0.00 3.41
702 703 6.128688 GGATGAGACTTTCTTTTCGAACAGAG 60.129 42.308 13.34 6.58 0.00 3.35
703 704 5.902681 TGAGACTTTCTTTTCGAACAGAGA 58.097 37.500 13.34 8.93 0.00 3.10
704 705 5.749109 TGAGACTTTCTTTTCGAACAGAGAC 59.251 40.000 13.34 4.91 0.00 3.36
705 706 4.740695 AGACTTTCTTTTCGAACAGAGACG 59.259 41.667 13.34 8.89 0.00 4.18
706 707 4.679662 ACTTTCTTTTCGAACAGAGACGA 58.320 39.130 13.34 0.00 36.75 4.20
707 708 5.107133 ACTTTCTTTTCGAACAGAGACGAA 58.893 37.500 13.34 5.31 44.66 3.85
721 722 3.436001 ACGAAAGTCGGCCATAGTG 57.564 52.632 2.24 0.00 45.59 2.74
722 723 0.892755 ACGAAAGTCGGCCATAGTGA 59.107 50.000 2.24 0.00 45.59 3.41
723 724 1.480954 ACGAAAGTCGGCCATAGTGAT 59.519 47.619 2.24 0.00 45.59 3.06
724 725 2.128035 CGAAAGTCGGCCATAGTGATC 58.872 52.381 2.24 0.00 36.00 2.92
725 726 2.484889 GAAAGTCGGCCATAGTGATCC 58.515 52.381 2.24 0.00 0.00 3.36
726 727 0.389391 AAGTCGGCCATAGTGATCCG 59.611 55.000 2.24 0.00 42.96 4.18
727 728 1.006102 GTCGGCCATAGTGATCCGG 60.006 63.158 2.24 0.00 41.98 5.14
728 729 2.207229 TCGGCCATAGTGATCCGGG 61.207 63.158 2.24 0.00 41.98 5.73
729 730 2.207229 CGGCCATAGTGATCCGGGA 61.207 63.158 2.24 0.00 38.35 5.14
730 731 1.674057 GGCCATAGTGATCCGGGAG 59.326 63.158 0.00 0.00 0.00 4.30
731 732 1.122019 GGCCATAGTGATCCGGGAGT 61.122 60.000 0.00 0.00 0.00 3.85
732 733 0.318762 GCCATAGTGATCCGGGAGTC 59.681 60.000 0.00 0.00 0.00 3.36
733 734 0.969894 CCATAGTGATCCGGGAGTCC 59.030 60.000 0.00 0.00 0.00 3.85
734 735 0.969894 CATAGTGATCCGGGAGTCCC 59.030 60.000 19.37 19.37 41.09 4.46
749 750 3.322466 CCCGTGTGGAAGGGCTCT 61.322 66.667 0.00 0.00 41.34 4.09
750 751 2.266055 CCGTGTGGAAGGGCTCTC 59.734 66.667 0.00 0.00 37.49 3.20
751 752 2.125912 CGTGTGGAAGGGCTCTCG 60.126 66.667 0.00 0.00 0.00 4.04
752 753 2.435059 GTGTGGAAGGGCTCTCGC 60.435 66.667 0.00 0.00 0.00 5.03
753 754 2.604686 TGTGGAAGGGCTCTCGCT 60.605 61.111 0.00 0.00 37.04 4.93
754 755 2.185608 GTGGAAGGGCTCTCGCTC 59.814 66.667 0.00 0.00 36.68 5.03
761 762 3.467776 GGGCTCTCGCTCTTGATTT 57.532 52.632 0.00 0.00 32.44 2.17
762 763 1.012841 GGGCTCTCGCTCTTGATTTG 58.987 55.000 0.00 0.00 32.44 2.32
763 764 1.012841 GGCTCTCGCTCTTGATTTGG 58.987 55.000 0.00 0.00 36.09 3.28
764 765 0.376502 GCTCTCGCTCTTGATTTGGC 59.623 55.000 0.00 0.00 0.00 4.52
765 766 1.012841 CTCTCGCTCTTGATTTGGCC 58.987 55.000 0.00 0.00 0.00 5.36
766 767 0.324614 TCTCGCTCTTGATTTGGCCA 59.675 50.000 0.00 0.00 0.00 5.36
767 768 0.731417 CTCGCTCTTGATTTGGCCAG 59.269 55.000 5.11 0.00 0.00 4.85
768 769 0.677731 TCGCTCTTGATTTGGCCAGG 60.678 55.000 5.11 0.00 0.00 4.45
769 770 0.677731 CGCTCTTGATTTGGCCAGGA 60.678 55.000 5.11 0.00 0.00 3.86
770 771 1.549203 GCTCTTGATTTGGCCAGGAA 58.451 50.000 5.11 0.00 0.00 3.36
771 772 1.895131 GCTCTTGATTTGGCCAGGAAA 59.105 47.619 5.11 0.00 0.00 3.13
772 773 2.353109 GCTCTTGATTTGGCCAGGAAAC 60.353 50.000 5.11 0.00 0.00 2.78
773 774 2.892852 CTCTTGATTTGGCCAGGAAACA 59.107 45.455 5.11 0.00 0.00 2.83
774 775 3.303938 TCTTGATTTGGCCAGGAAACAA 58.696 40.909 5.11 9.05 0.00 2.83
775 776 3.708631 TCTTGATTTGGCCAGGAAACAAA 59.291 39.130 5.11 0.00 38.33 2.83
776 777 3.749665 TGATTTGGCCAGGAAACAAAG 57.250 42.857 5.11 0.00 37.50 2.77
777 778 2.224257 TGATTTGGCCAGGAAACAAAGC 60.224 45.455 5.11 11.06 39.97 3.51
778 779 1.198713 TTTGGCCAGGAAACAAAGCA 58.801 45.000 5.11 0.00 31.21 3.91
779 780 0.463620 TTGGCCAGGAAACAAAGCAC 59.536 50.000 5.11 0.00 0.00 4.40
780 781 0.396974 TGGCCAGGAAACAAAGCACT 60.397 50.000 0.00 0.00 0.00 4.40
781 782 0.032540 GGCCAGGAAACAAAGCACTG 59.967 55.000 0.00 0.00 0.00 3.66
782 783 0.598419 GCCAGGAAACAAAGCACTGC 60.598 55.000 0.00 0.00 0.00 4.40
783 784 1.035139 CCAGGAAACAAAGCACTGCT 58.965 50.000 0.00 0.00 42.56 4.24
792 793 4.223125 AGCACTGCTTTGGGCCCA 62.223 61.111 24.45 24.45 40.92 5.36
793 794 3.688159 GCACTGCTTTGGGCCCAG 61.688 66.667 26.87 16.29 40.92 4.45
794 795 2.993264 CACTGCTTTGGGCCCAGG 60.993 66.667 26.87 22.20 40.92 4.45
795 796 3.185203 ACTGCTTTGGGCCCAGGA 61.185 61.111 26.87 15.23 40.92 3.86
796 797 2.118076 CTGCTTTGGGCCCAGGAA 59.882 61.111 26.87 17.01 40.92 3.36
797 798 1.980772 CTGCTTTGGGCCCAGGAAG 60.981 63.158 26.11 26.11 40.92 3.46
798 799 3.385384 GCTTTGGGCCCAGGAAGC 61.385 66.667 34.59 34.59 37.88 3.86
799 800 3.064324 CTTTGGGCCCAGGAAGCG 61.064 66.667 26.87 7.10 0.00 4.68
800 801 3.567579 CTTTGGGCCCAGGAAGCGA 62.568 63.158 26.87 4.99 0.00 4.93
801 802 3.140073 TTTGGGCCCAGGAAGCGAA 62.140 57.895 26.87 12.07 0.00 4.70
802 803 3.567579 TTGGGCCCAGGAAGCGAAG 62.568 63.158 26.87 0.00 0.00 3.79
803 804 4.803908 GGGCCCAGGAAGCGAAGG 62.804 72.222 19.95 0.00 0.00 3.46
804 805 4.803908 GGCCCAGGAAGCGAAGGG 62.804 72.222 0.00 0.00 44.37 3.95
805 806 3.717294 GCCCAGGAAGCGAAGGGA 61.717 66.667 0.00 0.00 44.30 4.20
806 807 3.077907 CCCAGGAAGCGAAGGGAA 58.922 61.111 0.00 0.00 44.30 3.97
807 808 1.609783 CCCAGGAAGCGAAGGGAAT 59.390 57.895 0.00 0.00 44.30 3.01
808 809 0.749454 CCCAGGAAGCGAAGGGAATG 60.749 60.000 0.00 0.00 44.30 2.67
809 810 0.253044 CCAGGAAGCGAAGGGAATGA 59.747 55.000 0.00 0.00 0.00 2.57
810 811 1.661341 CAGGAAGCGAAGGGAATGAG 58.339 55.000 0.00 0.00 0.00 2.90
813 814 1.294857 GAAGCGAAGGGAATGAGCTC 58.705 55.000 6.82 6.82 37.15 4.09
822 823 1.657751 GGAATGAGCTCGTTTGCCCC 61.658 60.000 21.80 14.37 0.00 5.80
840 841 0.818445 CCTGCCAGCTGCCTCTTATG 60.818 60.000 8.66 0.00 40.16 1.90
841 842 1.445716 CTGCCAGCTGCCTCTTATGC 61.446 60.000 8.66 4.14 40.16 3.14
842 843 2.541120 GCCAGCTGCCTCTTATGCG 61.541 63.158 8.66 0.00 0.00 4.73
843 844 1.153289 CCAGCTGCCTCTTATGCGT 60.153 57.895 8.66 0.00 0.00 5.24
844 845 1.434622 CCAGCTGCCTCTTATGCGTG 61.435 60.000 8.66 0.00 0.00 5.34
845 846 0.742281 CAGCTGCCTCTTATGCGTGT 60.742 55.000 0.00 0.00 0.00 4.49
846 847 0.742281 AGCTGCCTCTTATGCGTGTG 60.742 55.000 0.00 0.00 0.00 3.82
847 848 1.021390 GCTGCCTCTTATGCGTGTGT 61.021 55.000 0.00 0.00 0.00 3.72
922 3882 2.883574 CACGCGAGGTCAATTTAGGTA 58.116 47.619 15.93 0.00 0.00 3.08
947 3907 2.152016 GAGTAAACTCTTGTGTGGGGC 58.848 52.381 2.81 0.00 39.81 5.80
948 3908 0.872388 GTAAACTCTTGTGTGGGGCG 59.128 55.000 0.00 0.00 0.00 6.13
949 3909 0.250553 TAAACTCTTGTGTGGGGCGG 60.251 55.000 0.00 0.00 0.00 6.13
950 3910 1.990160 AAACTCTTGTGTGGGGCGGA 61.990 55.000 0.00 0.00 0.00 5.54
951 3911 1.990160 AACTCTTGTGTGGGGCGGAA 61.990 55.000 0.00 0.00 0.00 4.30
952 3912 1.228124 CTCTTGTGTGGGGCGGAAA 60.228 57.895 0.00 0.00 0.00 3.13
1059 4019 2.989253 TGCGAGGCGACAGAGGAA 60.989 61.111 0.00 0.00 0.00 3.36
1062 4022 2.973899 GAGGCGACAGAGGAAGCA 59.026 61.111 0.00 0.00 0.00 3.91
1138 4098 4.096003 ACGATGGGGGCGTGGAAG 62.096 66.667 0.00 0.00 40.94 3.46
1146 4106 3.479269 GGCGTGGAAGCGACGAAG 61.479 66.667 0.00 0.00 37.77 3.79
1256 4216 0.033366 AAACTGAATTTGCCCGGTGC 59.967 50.000 0.00 4.04 41.77 5.01
1265 4225 3.497879 GCCCGGTGCATGTAACTC 58.502 61.111 9.72 0.00 40.77 3.01
1281 4241 3.498774 AACTCACTGAATTCTGCAGGT 57.501 42.857 15.13 0.00 37.69 4.00
1344 4304 3.012518 GGATAGCCTATAACGCCTACGA 58.987 50.000 0.00 0.00 43.93 3.43
1350 4310 2.481568 CCTATAACGCCTACGATGACGA 59.518 50.000 0.00 0.00 43.93 4.20
1416 4376 0.461339 AGTGTCGCCAACGTGTTTCT 60.461 50.000 0.00 0.00 41.18 2.52
1457 4417 0.462047 GTACCCTCCGGCACAATCTG 60.462 60.000 0.00 0.00 0.00 2.90
1512 4472 2.879646 CCCGCTTTTACCACAAGTGTAA 59.120 45.455 0.00 0.00 30.98 2.41
1515 4475 3.605231 CGCTTTTACCACAAGTGTAACGG 60.605 47.826 0.00 0.00 45.86 4.44
1568 4535 2.823959 ACCCAGATTTGTGGCATGAAT 58.176 42.857 0.00 0.00 36.11 2.57
1597 4564 3.812609 CAGTGTGTACAAGTGTATGGCAA 59.187 43.478 0.00 0.00 32.54 4.52
1608 4575 1.067985 TGTATGGCAACCAAACATGCG 60.068 47.619 0.00 0.00 43.47 4.73
1669 8695 2.348411 AGGGAACAAATAGGCGATGG 57.652 50.000 0.00 0.00 0.00 3.51
1773 8802 9.597170 TCCGAGATATACTATCTGTACACATAC 57.403 37.037 1.50 0.00 33.45 2.39
1860 8889 7.474025 GTGTAATAAACATGAACAAAATTGCGC 59.526 33.333 0.00 0.00 41.10 6.09
2080 9110 0.035152 TTGCTCCGATGATGGTGCTT 60.035 50.000 8.13 0.00 46.19 3.91
2182 9212 1.156736 CGTCCGTTGCTTCCTGAAAT 58.843 50.000 0.00 0.00 0.00 2.17
2237 9269 0.674895 CGCCCTCAGAAAAGTGGGAG 60.675 60.000 5.34 0.00 43.47 4.30
2472 9517 3.499918 CCTCAACAAGATCAACTGTGACC 59.500 47.826 0.00 0.00 36.31 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.723309 TGCACCCAAAAATGCCTAAAAAT 58.277 34.783 0.00 0.00 41.33 1.82
1 2 4.156455 TGCACCCAAAAATGCCTAAAAA 57.844 36.364 0.00 0.00 41.33 1.94
2 3 3.845781 TGCACCCAAAAATGCCTAAAA 57.154 38.095 0.00 0.00 41.33 1.52
3 4 3.845781 TTGCACCCAAAAATGCCTAAA 57.154 38.095 0.00 0.00 41.33 1.85
4 5 3.471680 GTTTGCACCCAAAAATGCCTAA 58.528 40.909 0.00 0.00 42.19 2.69
5 6 2.546795 CGTTTGCACCCAAAAATGCCTA 60.547 45.455 0.00 0.00 42.19 3.93
6 7 1.809651 CGTTTGCACCCAAAAATGCCT 60.810 47.619 0.00 0.00 42.19 4.75
7 8 0.585838 CGTTTGCACCCAAAAATGCC 59.414 50.000 0.00 0.00 42.19 4.40
8 9 1.260297 GTCGTTTGCACCCAAAAATGC 59.740 47.619 0.00 0.00 42.19 3.56
9 10 2.539274 CAGTCGTTTGCACCCAAAAATG 59.461 45.455 0.00 0.00 42.19 2.32
10 11 2.820330 CAGTCGTTTGCACCCAAAAAT 58.180 42.857 0.00 0.00 42.19 1.82
11 12 1.737363 GCAGTCGTTTGCACCCAAAAA 60.737 47.619 8.62 0.00 42.19 1.94
12 13 0.179124 GCAGTCGTTTGCACCCAAAA 60.179 50.000 8.62 0.00 42.19 2.44
13 14 1.435515 GCAGTCGTTTGCACCCAAA 59.564 52.632 8.62 0.00 43.53 3.28
14 15 3.115556 GCAGTCGTTTGCACCCAA 58.884 55.556 8.62 0.00 43.53 4.12
20 21 1.132640 GATCCGTGCAGTCGTTTGC 59.867 57.895 6.90 6.90 44.33 3.68
21 22 0.163788 GTGATCCGTGCAGTCGTTTG 59.836 55.000 0.00 0.00 0.00 2.93
22 23 0.249699 TGTGATCCGTGCAGTCGTTT 60.250 50.000 0.00 0.00 0.00 3.60
23 24 0.249699 TTGTGATCCGTGCAGTCGTT 60.250 50.000 0.00 0.00 0.00 3.85
24 25 0.037326 ATTGTGATCCGTGCAGTCGT 60.037 50.000 0.00 0.00 0.00 4.34
25 26 0.371301 CATTGTGATCCGTGCAGTCG 59.629 55.000 0.00 0.00 0.00 4.18
26 27 1.129251 CACATTGTGATCCGTGCAGTC 59.871 52.381 11.45 0.00 35.23 3.51
27 28 1.159285 CACATTGTGATCCGTGCAGT 58.841 50.000 11.45 0.00 35.23 4.40
28 29 1.441738 TCACATTGTGATCCGTGCAG 58.558 50.000 15.41 0.00 37.67 4.41
29 30 1.889545 TTCACATTGTGATCCGTGCA 58.110 45.000 19.63 0.78 42.40 4.57
30 31 2.419673 TCATTCACATTGTGATCCGTGC 59.580 45.455 19.63 0.00 42.40 5.34
31 32 4.683501 TTCATTCACATTGTGATCCGTG 57.316 40.909 19.63 15.12 42.40 4.94
32 33 4.096833 CCATTCATTCACATTGTGATCCGT 59.903 41.667 19.63 4.80 42.40 4.69
33 34 4.096833 ACCATTCATTCACATTGTGATCCG 59.903 41.667 19.63 11.29 42.40 4.18
34 35 5.125900 TCACCATTCATTCACATTGTGATCC 59.874 40.000 19.63 0.00 42.40 3.36
35 36 6.198650 TCACCATTCATTCACATTGTGATC 57.801 37.500 19.63 0.00 42.40 2.92
36 37 6.593268 TTCACCATTCATTCACATTGTGAT 57.407 33.333 19.63 7.90 42.40 3.06
37 38 5.565242 GCTTCACCATTCATTCACATTGTGA 60.565 40.000 15.41 15.41 41.09 3.58
38 39 4.624024 GCTTCACCATTCATTCACATTGTG 59.376 41.667 10.64 10.64 34.45 3.33
39 40 4.281435 TGCTTCACCATTCATTCACATTGT 59.719 37.500 0.00 0.00 0.00 2.71
40 41 4.811908 TGCTTCACCATTCATTCACATTG 58.188 39.130 0.00 0.00 0.00 2.82
41 42 5.471556 TTGCTTCACCATTCATTCACATT 57.528 34.783 0.00 0.00 0.00 2.71
42 43 4.081862 CCTTGCTTCACCATTCATTCACAT 60.082 41.667 0.00 0.00 0.00 3.21
43 44 3.256383 CCTTGCTTCACCATTCATTCACA 59.744 43.478 0.00 0.00 0.00 3.58
44 45 3.841643 CCTTGCTTCACCATTCATTCAC 58.158 45.455 0.00 0.00 0.00 3.18
45 46 2.231964 GCCTTGCTTCACCATTCATTCA 59.768 45.455 0.00 0.00 0.00 2.57
46 47 2.494870 AGCCTTGCTTCACCATTCATTC 59.505 45.455 0.00 0.00 33.89 2.67
47 48 2.532843 AGCCTTGCTTCACCATTCATT 58.467 42.857 0.00 0.00 33.89 2.57
48 49 2.226962 AGCCTTGCTTCACCATTCAT 57.773 45.000 0.00 0.00 33.89 2.57
49 50 1.999648 AAGCCTTGCTTCACCATTCA 58.000 45.000 0.00 0.00 46.77 2.57
50 51 2.159324 GCTAAGCCTTGCTTCACCATTC 60.159 50.000 4.33 0.00 46.77 2.67
51 52 1.821136 GCTAAGCCTTGCTTCACCATT 59.179 47.619 4.33 0.00 46.77 3.16
52 53 1.272092 TGCTAAGCCTTGCTTCACCAT 60.272 47.619 4.33 0.00 46.77 3.55
53 54 0.110295 TGCTAAGCCTTGCTTCACCA 59.890 50.000 4.33 0.00 46.77 4.17
54 55 0.807496 CTGCTAAGCCTTGCTTCACC 59.193 55.000 4.33 0.00 46.77 4.02
55 56 0.807496 CCTGCTAAGCCTTGCTTCAC 59.193 55.000 4.33 0.00 46.77 3.18
56 57 0.401738 ACCTGCTAAGCCTTGCTTCA 59.598 50.000 4.33 0.00 46.77 3.02
57 58 0.807496 CACCTGCTAAGCCTTGCTTC 59.193 55.000 4.33 0.00 46.77 3.86
59 60 0.607489 CACACCTGCTAAGCCTTGCT 60.607 55.000 0.00 0.00 42.56 3.91
60 61 1.878775 CACACCTGCTAAGCCTTGC 59.121 57.895 0.00 0.00 0.00 4.01
61 62 1.878775 GCACACCTGCTAAGCCTTG 59.121 57.895 0.00 0.00 40.63 3.61
62 63 1.672356 CGCACACCTGCTAAGCCTT 60.672 57.895 0.00 0.00 41.77 4.35
63 64 2.046892 CGCACACCTGCTAAGCCT 60.047 61.111 0.00 0.00 41.77 4.58
64 65 3.804193 GCGCACACCTGCTAAGCC 61.804 66.667 0.30 0.00 41.77 4.35
65 66 3.804193 GGCGCACACCTGCTAAGC 61.804 66.667 10.83 0.00 41.77 3.09
66 67 1.672356 AAGGCGCACACCTGCTAAG 60.672 57.895 10.83 0.00 39.93 2.18
67 68 1.965930 CAAGGCGCACACCTGCTAA 60.966 57.895 10.83 0.00 39.93 3.09
68 69 2.358615 CAAGGCGCACACCTGCTA 60.359 61.111 10.83 0.00 39.93 3.49
80 81 4.986622 AGTTATCTGAAAATTCGCAAGGC 58.013 39.130 0.00 0.00 38.47 4.35
81 82 6.611381 TGAAGTTATCTGAAAATTCGCAAGG 58.389 36.000 7.63 0.00 36.49 3.61
82 83 7.964559 TGATGAAGTTATCTGAAAATTCGCAAG 59.035 33.333 7.63 0.00 36.49 4.01
83 84 7.815641 TGATGAAGTTATCTGAAAATTCGCAA 58.184 30.769 7.63 0.00 36.49 4.85
84 85 7.376435 TGATGAAGTTATCTGAAAATTCGCA 57.624 32.000 7.63 6.35 36.49 5.10
85 86 8.847444 ATTGATGAAGTTATCTGAAAATTCGC 57.153 30.769 7.63 4.75 36.49 4.70
99 100 8.025445 GCACAACATCTTAAGATTGATGAAGTT 58.975 33.333 20.54 14.48 41.69 2.66
100 101 7.362401 GGCACAACATCTTAAGATTGATGAAGT 60.362 37.037 20.54 10.14 41.69 3.01
101 102 6.971184 GGCACAACATCTTAAGATTGATGAAG 59.029 38.462 20.54 14.90 41.69 3.02
102 103 6.403527 CGGCACAACATCTTAAGATTGATGAA 60.404 38.462 20.54 0.00 41.69 2.57
103 104 5.065090 CGGCACAACATCTTAAGATTGATGA 59.935 40.000 20.54 0.00 41.69 2.92
104 105 5.065090 TCGGCACAACATCTTAAGATTGATG 59.935 40.000 20.54 17.81 43.90 3.07
105 106 5.185454 TCGGCACAACATCTTAAGATTGAT 58.815 37.500 20.54 6.78 31.21 2.57
106 107 4.574892 TCGGCACAACATCTTAAGATTGA 58.425 39.130 20.54 6.23 31.21 2.57
107 108 4.944962 TCGGCACAACATCTTAAGATTG 57.055 40.909 15.49 14.93 31.21 2.67
108 109 5.647658 TGAATCGGCACAACATCTTAAGATT 59.352 36.000 15.49 0.10 31.21 2.40
109 110 5.185454 TGAATCGGCACAACATCTTAAGAT 58.815 37.500 12.37 12.37 34.56 2.40
110 111 4.574892 TGAATCGGCACAACATCTTAAGA 58.425 39.130 7.82 7.82 0.00 2.10
111 112 4.944962 TGAATCGGCACAACATCTTAAG 57.055 40.909 0.00 0.00 0.00 1.85
112 113 4.940654 TGATGAATCGGCACAACATCTTAA 59.059 37.500 0.00 0.00 38.36 1.85
113 114 4.512484 TGATGAATCGGCACAACATCTTA 58.488 39.130 0.00 0.00 38.36 2.10
114 115 3.346315 TGATGAATCGGCACAACATCTT 58.654 40.909 0.00 0.00 38.36 2.40
115 116 2.989909 TGATGAATCGGCACAACATCT 58.010 42.857 0.00 0.00 38.36 2.90
116 117 3.624900 CATGATGAATCGGCACAACATC 58.375 45.455 0.00 0.00 38.13 3.06
117 118 2.223641 GCATGATGAATCGGCACAACAT 60.224 45.455 0.00 0.00 32.22 2.71
118 119 1.132834 GCATGATGAATCGGCACAACA 59.867 47.619 0.00 0.00 32.22 3.33
119 120 1.402968 AGCATGATGAATCGGCACAAC 59.597 47.619 0.00 0.00 33.72 3.32
120 121 1.672363 GAGCATGATGAATCGGCACAA 59.328 47.619 0.00 0.00 33.72 3.33
121 122 1.302366 GAGCATGATGAATCGGCACA 58.698 50.000 0.00 0.00 33.72 4.57
122 123 0.234106 CGAGCATGATGAATCGGCAC 59.766 55.000 11.22 3.06 33.72 5.01
123 124 0.179076 ACGAGCATGATGAATCGGCA 60.179 50.000 19.67 0.00 39.42 5.69
124 125 1.723542 CTACGAGCATGATGAATCGGC 59.276 52.381 19.67 0.02 39.42 5.54
125 126 2.029918 TCCTACGAGCATGATGAATCGG 60.030 50.000 19.67 7.31 39.42 4.18
126 127 3.288809 TCCTACGAGCATGATGAATCG 57.711 47.619 15.77 15.77 40.86 3.34
127 128 5.809562 CCTATTCCTACGAGCATGATGAATC 59.190 44.000 0.00 0.00 0.00 2.52
128 129 5.337894 CCCTATTCCTACGAGCATGATGAAT 60.338 44.000 0.00 0.00 0.00 2.57
129 130 4.021104 CCCTATTCCTACGAGCATGATGAA 60.021 45.833 0.00 0.00 0.00 2.57
130 131 3.511540 CCCTATTCCTACGAGCATGATGA 59.488 47.826 0.00 0.00 0.00 2.92
131 132 3.259374 ACCCTATTCCTACGAGCATGATG 59.741 47.826 0.00 0.00 0.00 3.07
132 133 3.259374 CACCCTATTCCTACGAGCATGAT 59.741 47.826 0.00 0.00 0.00 2.45
133 134 2.628178 CACCCTATTCCTACGAGCATGA 59.372 50.000 0.00 0.00 0.00 3.07
134 135 2.365617 ACACCCTATTCCTACGAGCATG 59.634 50.000 0.00 0.00 0.00 4.06
135 136 2.365617 CACACCCTATTCCTACGAGCAT 59.634 50.000 0.00 0.00 0.00 3.79
136 137 1.754803 CACACCCTATTCCTACGAGCA 59.245 52.381 0.00 0.00 0.00 4.26
137 138 1.538419 GCACACCCTATTCCTACGAGC 60.538 57.143 0.00 0.00 0.00 5.03
138 139 1.269102 CGCACACCCTATTCCTACGAG 60.269 57.143 0.00 0.00 0.00 4.18
139 140 0.742505 CGCACACCCTATTCCTACGA 59.257 55.000 0.00 0.00 0.00 3.43
140 141 0.249322 CCGCACACCCTATTCCTACG 60.249 60.000 0.00 0.00 0.00 3.51
141 142 0.106149 CCCGCACACCCTATTCCTAC 59.894 60.000 0.00 0.00 0.00 3.18
142 143 1.692173 GCCCGCACACCCTATTCCTA 61.692 60.000 0.00 0.00 0.00 2.94
143 144 3.043999 GCCCGCACACCCTATTCCT 62.044 63.158 0.00 0.00 0.00 3.36
144 145 2.516225 GCCCGCACACCCTATTCC 60.516 66.667 0.00 0.00 0.00 3.01
145 146 2.895372 CGCCCGCACACCCTATTC 60.895 66.667 0.00 0.00 0.00 1.75
146 147 3.385749 CTCGCCCGCACACCCTATT 62.386 63.158 0.00 0.00 0.00 1.73
147 148 3.849951 CTCGCCCGCACACCCTAT 61.850 66.667 0.00 0.00 0.00 2.57
152 153 3.712881 GAACACTCGCCCGCACAC 61.713 66.667 0.00 0.00 0.00 3.82
153 154 2.161078 TATGAACACTCGCCCGCACA 62.161 55.000 0.00 0.00 0.00 4.57
154 155 1.421410 CTATGAACACTCGCCCGCAC 61.421 60.000 0.00 0.00 0.00 5.34
155 156 1.153647 CTATGAACACTCGCCCGCA 60.154 57.895 0.00 0.00 0.00 5.69
156 157 0.872021 CTCTATGAACACTCGCCCGC 60.872 60.000 0.00 0.00 0.00 6.13
157 158 0.738975 TCTCTATGAACACTCGCCCG 59.261 55.000 0.00 0.00 0.00 6.13
158 159 4.038162 ACTTATCTCTATGAACACTCGCCC 59.962 45.833 0.00 0.00 0.00 6.13
159 160 4.979197 CACTTATCTCTATGAACACTCGCC 59.021 45.833 0.00 0.00 0.00 5.54
160 161 4.442733 GCACTTATCTCTATGAACACTCGC 59.557 45.833 0.00 0.00 0.00 5.03
161 162 5.582550 TGCACTTATCTCTATGAACACTCG 58.417 41.667 0.00 0.00 0.00 4.18
162 163 6.983307 ACATGCACTTATCTCTATGAACACTC 59.017 38.462 0.00 0.00 0.00 3.51
163 164 6.882656 ACATGCACTTATCTCTATGAACACT 58.117 36.000 0.00 0.00 0.00 3.55
164 165 7.096436 CGTACATGCACTTATCTCTATGAACAC 60.096 40.741 0.00 0.00 0.00 3.32
165 166 6.918022 CGTACATGCACTTATCTCTATGAACA 59.082 38.462 0.00 0.00 0.00 3.18
166 167 6.918569 ACGTACATGCACTTATCTCTATGAAC 59.081 38.462 0.00 0.00 0.00 3.18
167 168 7.013369 AGACGTACATGCACTTATCTCTATGAA 59.987 37.037 0.00 0.00 0.00 2.57
168 169 6.486993 AGACGTACATGCACTTATCTCTATGA 59.513 38.462 0.00 0.00 0.00 2.15
169 170 6.673106 AGACGTACATGCACTTATCTCTATG 58.327 40.000 0.00 0.00 0.00 2.23
170 171 6.885952 AGACGTACATGCACTTATCTCTAT 57.114 37.500 0.00 0.00 0.00 1.98
171 172 7.981102 ATAGACGTACATGCACTTATCTCTA 57.019 36.000 0.00 0.00 0.00 2.43
172 173 6.885952 ATAGACGTACATGCACTTATCTCT 57.114 37.500 0.00 0.00 0.00 3.10
173 174 8.608102 CATATAGACGTACATGCACTTATCTC 57.392 38.462 0.00 0.00 0.00 2.75
525 526 7.889812 TAGAAACAGAAACCTTGGTTCGCCA 62.890 44.000 5.43 0.00 44.85 5.69
526 527 1.029681 AACAGAAACCTTGGTTCGCC 58.970 50.000 5.43 0.00 37.92 5.54
527 528 2.357952 AGAAACAGAAACCTTGGTTCGC 59.642 45.455 5.43 1.88 44.85 4.70
528 529 5.106673 GGATAGAAACAGAAACCTTGGTTCG 60.107 44.000 5.43 0.96 44.85 3.95
529 530 5.183331 GGGATAGAAACAGAAACCTTGGTTC 59.817 44.000 5.43 0.00 41.48 3.62
530 531 5.077564 GGGATAGAAACAGAAACCTTGGTT 58.922 41.667 0.00 0.00 0.00 3.67
531 532 4.354087 AGGGATAGAAACAGAAACCTTGGT 59.646 41.667 0.00 0.00 0.00 3.67
532 533 4.923415 AGGGATAGAAACAGAAACCTTGG 58.077 43.478 0.00 0.00 0.00 3.61
533 534 9.853177 ATATAAGGGATAGAAACAGAAACCTTG 57.147 33.333 0.00 0.00 37.61 3.61
538 539 9.998106 GCTGTATATAAGGGATAGAAACAGAAA 57.002 33.333 0.00 0.00 34.31 2.52
539 540 9.154632 TGCTGTATATAAGGGATAGAAACAGAA 57.845 33.333 0.00 0.00 34.31 3.02
540 541 8.721133 TGCTGTATATAAGGGATAGAAACAGA 57.279 34.615 0.00 0.00 34.31 3.41
546 547 9.147732 CCACATATGCTGTATATAAGGGATAGA 57.852 37.037 1.58 0.00 35.91 1.98
547 548 8.370940 CCCACATATGCTGTATATAAGGGATAG 58.629 40.741 20.44 2.85 42.31 2.08
548 549 7.292356 CCCCACATATGCTGTATATAAGGGATA 59.708 40.741 23.90 0.00 42.31 2.59
549 550 6.101734 CCCCACATATGCTGTATATAAGGGAT 59.898 42.308 23.90 0.00 42.31 3.85
550 551 5.428457 CCCCACATATGCTGTATATAAGGGA 59.572 44.000 23.90 0.00 42.31 4.20
551 552 5.191722 ACCCCACATATGCTGTATATAAGGG 59.808 44.000 19.15 19.15 40.90 3.95
552 553 6.115446 CACCCCACATATGCTGTATATAAGG 58.885 44.000 1.58 3.94 35.91 2.69
553 554 6.595326 CACACCCCACATATGCTGTATATAAG 59.405 42.308 1.58 0.00 35.91 1.73
554 555 6.472016 CACACCCCACATATGCTGTATATAA 58.528 40.000 1.58 0.00 35.91 0.98
555 556 5.045942 CCACACCCCACATATGCTGTATATA 60.046 44.000 1.58 0.00 35.91 0.86
556 557 4.263462 CCACACCCCACATATGCTGTATAT 60.263 45.833 1.58 0.00 35.91 0.86
557 558 3.072330 CCACACCCCACATATGCTGTATA 59.928 47.826 1.58 0.00 35.91 1.47
558 559 2.158623 CCACACCCCACATATGCTGTAT 60.159 50.000 1.58 0.00 35.91 2.29
559 560 1.211703 CCACACCCCACATATGCTGTA 59.788 52.381 1.58 0.00 35.91 2.74
560 561 0.034186 CCACACCCCACATATGCTGT 60.034 55.000 1.58 0.00 39.20 4.40
561 562 0.034186 ACCACACCCCACATATGCTG 60.034 55.000 1.58 0.62 0.00 4.41
562 563 0.034186 CACCACACCCCACATATGCT 60.034 55.000 1.58 0.00 0.00 3.79
563 564 0.323360 ACACCACACCCCACATATGC 60.323 55.000 1.58 0.00 0.00 3.14
564 565 1.271871 ACACACCACACCCCACATATG 60.272 52.381 0.00 0.00 0.00 1.78
565 566 1.072266 ACACACCACACCCCACATAT 58.928 50.000 0.00 0.00 0.00 1.78
566 567 0.109532 CACACACCACACCCCACATA 59.890 55.000 0.00 0.00 0.00 2.29
567 568 1.152777 CACACACCACACCCCACAT 60.153 57.895 0.00 0.00 0.00 3.21
568 569 2.273776 CACACACCACACCCCACA 59.726 61.111 0.00 0.00 0.00 4.17
569 570 2.118404 CACACACACCACACCCCAC 61.118 63.158 0.00 0.00 0.00 4.61
570 571 2.273776 CACACACACCACACCCCA 59.726 61.111 0.00 0.00 0.00 4.96
571 572 2.118404 CACACACACACCACACCCC 61.118 63.158 0.00 0.00 0.00 4.95
572 573 2.118404 CCACACACACACCACACCC 61.118 63.158 0.00 0.00 0.00 4.61
573 574 1.377987 ACCACACACACACCACACC 60.378 57.895 0.00 0.00 0.00 4.16
574 575 0.958382 ACACCACACACACACCACAC 60.958 55.000 0.00 0.00 0.00 3.82
575 576 0.957888 CACACCACACACACACCACA 60.958 55.000 0.00 0.00 0.00 4.17
576 577 1.653094 CCACACCACACACACACCAC 61.653 60.000 0.00 0.00 0.00 4.16
577 578 1.377856 CCACACCACACACACACCA 60.378 57.895 0.00 0.00 0.00 4.17
578 579 2.118404 CCCACACCACACACACACC 61.118 63.158 0.00 0.00 0.00 4.16
579 580 2.118404 CCCCACACCACACACACAC 61.118 63.158 0.00 0.00 0.00 3.82
580 581 2.273776 CCCCACACCACACACACA 59.726 61.111 0.00 0.00 0.00 3.72
581 582 2.518349 CCCCCACACCACACACAC 60.518 66.667 0.00 0.00 0.00 3.82
595 596 0.496841 ACATATACTCCCCCTCCCCC 59.503 60.000 0.00 0.00 0.00 5.40
596 597 2.157989 AGAACATATACTCCCCCTCCCC 60.158 54.545 0.00 0.00 0.00 4.81
597 598 2.907042 CAGAACATATACTCCCCCTCCC 59.093 54.545 0.00 0.00 0.00 4.30
598 599 2.303311 GCAGAACATATACTCCCCCTCC 59.697 54.545 0.00 0.00 0.00 4.30
599 600 2.028930 CGCAGAACATATACTCCCCCTC 60.029 54.545 0.00 0.00 0.00 4.30
600 601 1.971357 CGCAGAACATATACTCCCCCT 59.029 52.381 0.00 0.00 0.00 4.79
601 602 1.692519 ACGCAGAACATATACTCCCCC 59.307 52.381 0.00 0.00 0.00 5.40
602 603 2.364324 TCACGCAGAACATATACTCCCC 59.636 50.000 0.00 0.00 0.00 4.81
603 604 3.728076 TCACGCAGAACATATACTCCC 57.272 47.619 0.00 0.00 0.00 4.30
604 605 6.924060 AGTAAATCACGCAGAACATATACTCC 59.076 38.462 0.00 0.00 0.00 3.85
605 606 7.932120 AGTAAATCACGCAGAACATATACTC 57.068 36.000 0.00 0.00 0.00 2.59
606 607 7.979537 TCAAGTAAATCACGCAGAACATATACT 59.020 33.333 0.00 0.00 0.00 2.12
607 608 8.126871 TCAAGTAAATCACGCAGAACATATAC 57.873 34.615 0.00 0.00 0.00 1.47
617 618 7.549134 AGTTAAGATGATCAAGTAAATCACGCA 59.451 33.333 0.00 0.00 36.04 5.24
669 670 9.162764 CGAAAAGAAAGTCTCATCCCTAATAAA 57.837 33.333 0.00 0.00 0.00 1.40
670 671 8.537016 TCGAAAAGAAAGTCTCATCCCTAATAA 58.463 33.333 0.00 0.00 0.00 1.40
671 672 8.074613 TCGAAAAGAAAGTCTCATCCCTAATA 57.925 34.615 0.00 0.00 0.00 0.98
672 673 6.947464 TCGAAAAGAAAGTCTCATCCCTAAT 58.053 36.000 0.00 0.00 0.00 1.73
673 674 6.354794 TCGAAAAGAAAGTCTCATCCCTAA 57.645 37.500 0.00 0.00 0.00 2.69
674 675 5.995565 TCGAAAAGAAAGTCTCATCCCTA 57.004 39.130 0.00 0.00 0.00 3.53
675 676 4.891992 TCGAAAAGAAAGTCTCATCCCT 57.108 40.909 0.00 0.00 0.00 4.20
676 677 4.755123 TGTTCGAAAAGAAAGTCTCATCCC 59.245 41.667 0.00 0.00 41.10 3.85
677 678 5.696724 TCTGTTCGAAAAGAAAGTCTCATCC 59.303 40.000 15.82 0.00 41.10 3.51
678 679 6.642950 TCTCTGTTCGAAAAGAAAGTCTCATC 59.357 38.462 18.50 0.00 41.10 2.92
679 680 6.422400 GTCTCTGTTCGAAAAGAAAGTCTCAT 59.578 38.462 18.50 0.00 41.10 2.90
680 681 5.749109 GTCTCTGTTCGAAAAGAAAGTCTCA 59.251 40.000 18.50 0.00 41.10 3.27
681 682 5.108179 CGTCTCTGTTCGAAAAGAAAGTCTC 60.108 44.000 18.50 5.56 41.10 3.36
682 683 4.740695 CGTCTCTGTTCGAAAAGAAAGTCT 59.259 41.667 18.50 0.00 41.10 3.24
683 684 4.738740 TCGTCTCTGTTCGAAAAGAAAGTC 59.261 41.667 18.50 5.79 41.10 3.01
684 685 4.679662 TCGTCTCTGTTCGAAAAGAAAGT 58.320 39.130 18.50 0.00 41.10 2.66
685 686 5.637104 TTCGTCTCTGTTCGAAAAGAAAG 57.363 39.130 18.50 12.36 41.85 2.62
692 693 2.603892 CCGACTTTCGTCTCTGTTCGAA 60.604 50.000 0.00 0.00 42.82 3.71
693 694 1.069432 CCGACTTTCGTCTCTGTTCGA 60.069 52.381 0.00 0.00 38.40 3.71
694 695 1.328439 CCGACTTTCGTCTCTGTTCG 58.672 55.000 0.00 0.00 38.40 3.95
695 696 1.061485 GCCGACTTTCGTCTCTGTTC 58.939 55.000 0.00 0.00 38.40 3.18
696 697 0.319641 GGCCGACTTTCGTCTCTGTT 60.320 55.000 0.00 0.00 38.40 3.16
697 698 1.289380 GGCCGACTTTCGTCTCTGT 59.711 57.895 0.00 0.00 38.40 3.41
698 699 0.108615 ATGGCCGACTTTCGTCTCTG 60.109 55.000 0.00 0.00 38.40 3.35
699 700 1.405821 CTATGGCCGACTTTCGTCTCT 59.594 52.381 0.00 0.00 38.40 3.10
700 701 1.134560 ACTATGGCCGACTTTCGTCTC 59.865 52.381 0.00 0.00 38.40 3.36
701 702 1.135083 CACTATGGCCGACTTTCGTCT 60.135 52.381 0.00 0.00 38.40 4.18
702 703 1.135199 TCACTATGGCCGACTTTCGTC 60.135 52.381 0.00 0.00 38.40 4.20
703 704 0.892755 TCACTATGGCCGACTTTCGT 59.107 50.000 0.00 0.00 38.40 3.85
704 705 2.128035 GATCACTATGGCCGACTTTCG 58.872 52.381 0.00 0.00 40.07 3.46
705 706 2.484889 GGATCACTATGGCCGACTTTC 58.515 52.381 0.00 0.00 0.00 2.62
706 707 1.202533 CGGATCACTATGGCCGACTTT 60.203 52.381 0.00 0.00 46.29 2.66
707 708 0.389391 CGGATCACTATGGCCGACTT 59.611 55.000 0.00 0.00 46.29 3.01
708 709 1.464376 CCGGATCACTATGGCCGACT 61.464 60.000 0.00 0.00 46.29 4.18
709 710 1.006102 CCGGATCACTATGGCCGAC 60.006 63.158 0.00 0.00 46.29 4.79
710 711 2.207229 CCCGGATCACTATGGCCGA 61.207 63.158 0.73 0.00 46.29 5.54
711 712 2.159819 CTCCCGGATCACTATGGCCG 62.160 65.000 0.73 0.00 43.20 6.13
712 713 1.122019 ACTCCCGGATCACTATGGCC 61.122 60.000 0.73 0.00 0.00 5.36
713 714 0.318762 GACTCCCGGATCACTATGGC 59.681 60.000 0.73 0.00 0.00 4.40
714 715 0.969894 GGACTCCCGGATCACTATGG 59.030 60.000 0.73 0.00 0.00 2.74
715 716 0.969894 GGGACTCCCGGATCACTATG 59.030 60.000 0.73 0.00 32.13 2.23
716 717 3.459386 GGGACTCCCGGATCACTAT 57.541 57.895 0.73 0.00 32.13 2.12
731 732 3.319198 GAGCCCTTCCACACGGGA 61.319 66.667 0.00 0.00 46.61 5.14
732 733 3.316573 GAGAGCCCTTCCACACGGG 62.317 68.421 0.00 0.00 43.60 5.28
733 734 2.266055 GAGAGCCCTTCCACACGG 59.734 66.667 0.00 0.00 0.00 4.94
734 735 2.125912 CGAGAGCCCTTCCACACG 60.126 66.667 0.00 0.00 0.00 4.49
746 747 1.012841 GGCCAAATCAAGAGCGAGAG 58.987 55.000 0.00 0.00 0.00 3.20
747 748 0.324614 TGGCCAAATCAAGAGCGAGA 59.675 50.000 0.61 0.00 0.00 4.04
748 749 0.731417 CTGGCCAAATCAAGAGCGAG 59.269 55.000 7.01 0.00 0.00 5.03
749 750 0.677731 CCTGGCCAAATCAAGAGCGA 60.678 55.000 7.01 0.00 0.00 4.93
750 751 0.677731 TCCTGGCCAAATCAAGAGCG 60.678 55.000 7.01 0.00 0.00 5.03
751 752 1.549203 TTCCTGGCCAAATCAAGAGC 58.451 50.000 7.01 0.00 0.00 4.09
752 753 2.892852 TGTTTCCTGGCCAAATCAAGAG 59.107 45.455 7.01 0.00 0.00 2.85
753 754 2.956132 TGTTTCCTGGCCAAATCAAGA 58.044 42.857 7.01 0.00 0.00 3.02
754 755 3.749665 TTGTTTCCTGGCCAAATCAAG 57.250 42.857 7.01 0.00 0.00 3.02
755 756 3.743899 GCTTTGTTTCCTGGCCAAATCAA 60.744 43.478 7.01 8.20 0.00 2.57
756 757 2.224257 GCTTTGTTTCCTGGCCAAATCA 60.224 45.455 7.01 1.46 0.00 2.57
757 758 2.224257 TGCTTTGTTTCCTGGCCAAATC 60.224 45.455 7.01 0.00 0.00 2.17
758 759 1.767681 TGCTTTGTTTCCTGGCCAAAT 59.232 42.857 7.01 0.00 0.00 2.32
759 760 1.134551 GTGCTTTGTTTCCTGGCCAAA 60.135 47.619 7.01 0.00 0.00 3.28
760 761 0.463620 GTGCTTTGTTTCCTGGCCAA 59.536 50.000 7.01 0.00 0.00 4.52
761 762 0.396974 AGTGCTTTGTTTCCTGGCCA 60.397 50.000 4.71 4.71 0.00 5.36
762 763 0.032540 CAGTGCTTTGTTTCCTGGCC 59.967 55.000 0.00 0.00 0.00 5.36
763 764 0.598419 GCAGTGCTTTGTTTCCTGGC 60.598 55.000 8.18 0.00 0.00 4.85
764 765 1.035139 AGCAGTGCTTTGTTTCCTGG 58.965 50.000 13.14 0.00 33.89 4.45
775 776 4.223125 TGGGCCCAAAGCAGTGCT 62.223 61.111 26.33 13.14 46.50 4.40
776 777 3.688159 CTGGGCCCAAAGCAGTGC 61.688 66.667 28.29 7.13 46.50 4.40
777 778 2.993264 CCTGGGCCCAAAGCAGTG 60.993 66.667 28.29 12.30 46.50 3.66
778 779 2.720144 CTTCCTGGGCCCAAAGCAGT 62.720 60.000 28.29 0.00 46.50 4.40
779 780 1.980772 CTTCCTGGGCCCAAAGCAG 60.981 63.158 28.29 16.12 46.50 4.24
780 781 2.118076 CTTCCTGGGCCCAAAGCA 59.882 61.111 28.29 9.93 46.50 3.91
781 782 3.385384 GCTTCCTGGGCCCAAAGC 61.385 66.667 34.59 34.59 42.60 3.51
782 783 3.064324 CGCTTCCTGGGCCCAAAG 61.064 66.667 28.29 27.00 0.00 2.77
783 784 3.140073 TTCGCTTCCTGGGCCCAAA 62.140 57.895 28.29 17.69 0.00 3.28
784 785 3.567579 CTTCGCTTCCTGGGCCCAA 62.568 63.158 28.29 9.54 0.00 4.12
785 786 4.033776 CTTCGCTTCCTGGGCCCA 62.034 66.667 26.67 26.67 0.00 5.36
786 787 4.803908 CCTTCGCTTCCTGGGCCC 62.804 72.222 17.59 17.59 0.00 5.80
787 788 4.803908 CCCTTCGCTTCCTGGGCC 62.804 72.222 0.00 0.00 32.49 5.80
788 789 2.558380 ATTCCCTTCGCTTCCTGGGC 62.558 60.000 0.00 0.00 39.49 5.36
789 790 0.749454 CATTCCCTTCGCTTCCTGGG 60.749 60.000 0.00 0.00 40.95 4.45
790 791 0.253044 TCATTCCCTTCGCTTCCTGG 59.747 55.000 0.00 0.00 0.00 4.45
791 792 1.661341 CTCATTCCCTTCGCTTCCTG 58.339 55.000 0.00 0.00 0.00 3.86
792 793 0.107459 GCTCATTCCCTTCGCTTCCT 60.107 55.000 0.00 0.00 0.00 3.36
793 794 0.107459 AGCTCATTCCCTTCGCTTCC 60.107 55.000 0.00 0.00 0.00 3.46
794 795 1.294857 GAGCTCATTCCCTTCGCTTC 58.705 55.000 9.40 0.00 0.00 3.86
795 796 0.460987 CGAGCTCATTCCCTTCGCTT 60.461 55.000 15.40 0.00 0.00 4.68
796 797 1.142748 CGAGCTCATTCCCTTCGCT 59.857 57.895 15.40 0.00 0.00 4.93
797 798 0.741221 AACGAGCTCATTCCCTTCGC 60.741 55.000 15.40 0.00 0.00 4.70
798 799 1.394917 CAAACGAGCTCATTCCCTTCG 59.605 52.381 15.40 0.00 0.00 3.79
799 800 1.131315 GCAAACGAGCTCATTCCCTTC 59.869 52.381 15.40 0.00 0.00 3.46
800 801 1.168714 GCAAACGAGCTCATTCCCTT 58.831 50.000 15.40 0.00 0.00 3.95
801 802 0.678048 GGCAAACGAGCTCATTCCCT 60.678 55.000 15.40 0.00 34.17 4.20
802 803 1.657751 GGGCAAACGAGCTCATTCCC 61.658 60.000 15.40 9.06 34.32 3.97
803 804 1.657751 GGGGCAAACGAGCTCATTCC 61.658 60.000 15.40 2.94 36.47 3.01
804 805 0.678048 AGGGGCAAACGAGCTCATTC 60.678 55.000 15.40 0.00 36.47 2.67
805 806 0.962356 CAGGGGCAAACGAGCTCATT 60.962 55.000 15.40 0.49 36.47 2.57
806 807 1.377725 CAGGGGCAAACGAGCTCAT 60.378 57.895 15.40 0.00 36.47 2.90
807 808 2.032528 CAGGGGCAAACGAGCTCA 59.967 61.111 15.40 0.00 36.47 4.26
808 809 3.435186 GCAGGGGCAAACGAGCTC 61.435 66.667 2.73 2.73 40.72 4.09
829 830 2.293677 TACACACGCATAAGAGGCAG 57.706 50.000 0.00 0.00 0.00 4.85
836 837 4.944930 AGGGCTTTAAATACACACGCATAA 59.055 37.500 0.00 0.00 0.00 1.90
840 841 4.950434 TTAGGGCTTTAAATACACACGC 57.050 40.909 0.00 0.00 0.00 5.34
841 842 6.671614 TCATTAGGGCTTTAAATACACACG 57.328 37.500 0.00 0.00 0.00 4.49
937 3897 0.395862 TTTCTTTCCGCCCCACACAA 60.396 50.000 0.00 0.00 0.00 3.33
944 3904 2.230508 CCCTAACTTTTTCTTTCCGCCC 59.769 50.000 0.00 0.00 0.00 6.13
945 3905 2.889045 ACCCTAACTTTTTCTTTCCGCC 59.111 45.455 0.00 0.00 0.00 6.13
946 3906 5.694231 TTACCCTAACTTTTTCTTTCCGC 57.306 39.130 0.00 0.00 0.00 5.54
947 3907 6.147581 GCTTTACCCTAACTTTTTCTTTCCG 58.852 40.000 0.00 0.00 0.00 4.30
948 3908 6.453092 GGCTTTACCCTAACTTTTTCTTTCC 58.547 40.000 0.00 0.00 0.00 3.13
1062 4022 3.865929 CTCAACGTCCAGCAGCGGT 62.866 63.158 0.00 0.00 0.00 5.68
1138 4098 3.112709 GGACAGCCACTTCGTCGC 61.113 66.667 0.00 0.00 0.00 5.19
1141 4101 2.031163 GCAGGACAGCCACTTCGT 59.969 61.111 0.00 0.00 36.29 3.85
1151 4111 4.947147 AAAAGCGCCGGCAGGACA 62.947 61.111 28.98 0.00 43.41 4.02
1152 4112 3.610791 GAAAAAGCGCCGGCAGGAC 62.611 63.158 28.98 12.63 43.41 3.85
1153 4113 3.361977 GAAAAAGCGCCGGCAGGA 61.362 61.111 28.98 0.00 43.41 3.86
1154 4114 4.419939 GGAAAAAGCGCCGGCAGG 62.420 66.667 28.98 12.69 43.41 4.85
1197 4157 5.470845 GCATCACGACTTGCTACTATTTT 57.529 39.130 0.00 0.00 35.95 1.82
1256 4216 5.163784 CCTGCAGAATTCAGTGAGTTACATG 60.164 44.000 17.39 2.76 0.00 3.21
1257 4217 4.940046 CCTGCAGAATTCAGTGAGTTACAT 59.060 41.667 17.39 0.00 0.00 2.29
1258 4218 4.202357 ACCTGCAGAATTCAGTGAGTTACA 60.202 41.667 17.39 0.34 0.00 2.41
1259 4219 4.153117 CACCTGCAGAATTCAGTGAGTTAC 59.847 45.833 17.39 0.00 0.00 2.50
1265 4225 3.144506 AGAACACCTGCAGAATTCAGTG 58.855 45.455 17.39 15.64 0.00 3.66
1281 4241 1.380403 CCACACAACGGCCAAGAACA 61.380 55.000 2.24 0.00 0.00 3.18
1305 4265 5.512749 GCTATCCTCATCTGATTCACCATGT 60.513 44.000 0.00 0.00 0.00 3.21
1344 4304 0.453950 CGGTCTCGTTTCGTCGTCAT 60.454 55.000 0.00 0.00 0.00 3.06
1416 4376 0.181114 AGGCTGTGTGCTGAACAAGA 59.819 50.000 0.00 0.00 41.57 3.02
1457 4417 0.674895 AATCAGTGAAGCACGGAGGC 60.675 55.000 0.00 0.00 41.23 4.70
1515 4475 2.747446 TCTTTCCAGCGGCTAAATTGAC 59.253 45.455 0.26 0.00 0.00 3.18
1530 4490 6.721318 TCTGGGTAATGCCATATATCTTTCC 58.279 40.000 0.00 0.00 39.65 3.13
1568 4535 5.414789 ACACTTGTACACACTGCCATATA 57.585 39.130 0.00 0.00 0.00 0.86
1597 4564 0.038166 ATCAGTCCCGCATGTTTGGT 59.962 50.000 0.00 0.00 0.00 3.67
1608 4575 7.499563 GGGAAATTTCTAAGAGTTATCAGTCCC 59.500 40.741 17.42 1.38 0.00 4.46
1652 8675 4.385825 TCATACCATCGCCTATTTGTTCC 58.614 43.478 0.00 0.00 0.00 3.62
1860 8889 1.600957 CTAGCAAGCGGACATGGATTG 59.399 52.381 0.00 0.00 34.11 2.67
2080 9110 2.281484 GACCGCCCTTTCACAGCA 60.281 61.111 0.00 0.00 0.00 4.41
2120 9150 0.744414 CATGGGCTAACACCTGTCCG 60.744 60.000 0.00 0.00 0.00 4.79
2182 9212 7.867921 TCCTCATTTACTTCCTATTGCCTTTA 58.132 34.615 0.00 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.