Multiple sequence alignment - TraesCS4D01G078100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G078100 chr4D 100.000 4269 0 0 1 4269 52473989 52469721 0.000000e+00 7884.0
1 TraesCS4D01G078100 chr4D 100.000 29 0 0 2155 2183 260561748 260561720 2.000000e-03 54.7
2 TraesCS4D01G078100 chr4B 90.796 3042 158 41 303 3288 76819873 76816898 0.000000e+00 3954.0
3 TraesCS4D01G078100 chr4B 94.333 300 16 1 1 299 646118604 646118903 3.890000e-125 459.0
4 TraesCS4D01G078100 chr4B 92.069 290 21 2 3982 4269 76815940 76815651 1.430000e-109 407.0
5 TraesCS4D01G078100 chr4B 93.962 265 10 2 3289 3550 76816839 76816578 3.090000e-106 396.0
6 TraesCS4D01G078100 chr4B 88.623 334 21 9 3548 3874 76816536 76816213 1.440000e-104 390.0
7 TraesCS4D01G078100 chr4B 92.683 41 2 1 2143 2183 303669104 303669143 1.660000e-04 58.4
8 TraesCS4D01G078100 chr4B 100.000 30 0 0 2154 2183 512935315 512935344 5.960000e-04 56.5
9 TraesCS4D01G078100 chr4B 90.476 42 2 2 2143 2183 350842489 350842529 2.000000e-03 54.7
10 TraesCS4D01G078100 chr4A 90.387 1550 59 44 303 1833 544197845 544199323 0.000000e+00 1954.0
11 TraesCS4D01G078100 chr4A 87.643 1481 104 35 1830 3285 544199435 544200861 0.000000e+00 1648.0
12 TraesCS4D01G078100 chr4A 92.955 511 19 4 3288 3782 544200915 544201424 0.000000e+00 728.0
13 TraesCS4D01G078100 chr4A 93.357 286 16 2 3987 4269 544201748 544202033 1.840000e-113 420.0
14 TraesCS4D01G078100 chr7D 97.333 300 7 1 1 299 588680178 588680477 3.810000e-140 508.0
15 TraesCS4D01G078100 chr7D 93.333 300 9 7 1 299 164757055 164756766 2.360000e-117 433.0
16 TraesCS4D01G078100 chr7D 86.765 68 9 0 1592 1659 620991886 620991819 4.580000e-10 76.8
17 TraesCS4D01G078100 chr2D 97.333 300 7 1 1 299 102296520 102296221 3.810000e-140 508.0
18 TraesCS4D01G078100 chr2D 95.000 280 12 2 10 288 44900204 44900482 5.070000e-119 438.0
19 TraesCS4D01G078100 chr2D 87.222 180 23 0 1275 1454 640298895 640298716 5.600000e-49 206.0
20 TraesCS4D01G078100 chr2D 81.538 65 12 0 2155 2219 249178670 249178606 2.000000e-03 54.7
21 TraesCS4D01G078100 chr2D 100.000 29 0 0 2121 2149 629513775 629513747 2.000000e-03 54.7
22 TraesCS4D01G078100 chr5D 97.000 300 8 1 1 299 428835044 428835343 1.770000e-138 503.0
23 TraesCS4D01G078100 chr5D 85.572 201 25 3 982 1180 475302609 475302807 1.560000e-49 207.0
24 TraesCS4D01G078100 chr5D 99.091 110 0 1 195 303 268929683 268929574 3.370000e-46 196.0
25 TraesCS4D01G078100 chr5D 89.623 106 11 0 1350 1455 82187575 82187680 7.450000e-28 135.0
26 TraesCS4D01G078100 chr5D 100.000 29 0 0 2155 2183 280140847 280140875 2.000000e-03 54.7
27 TraesCS4D01G078100 chr2B 93.399 303 18 2 1 302 782556559 782556860 8.420000e-122 448.0
28 TraesCS4D01G078100 chr2B 87.778 180 22 0 1275 1454 801162567 801162746 1.200000e-50 211.0
29 TraesCS4D01G078100 chr2B 86.275 51 6 1 2155 2205 407823063 407823112 2.000000e-03 54.7
30 TraesCS4D01G078100 chr1D 93.333 300 19 1 1 299 184302857 184302558 3.920000e-120 442.0
31 TraesCS4D01G078100 chr1D 98.165 218 4 0 1 218 260402918 260402701 8.660000e-102 381.0
32 TraesCS4D01G078100 chr1D 100.000 29 0 0 2155 2183 225114462 225114490 2.000000e-03 54.7
33 TraesCS4D01G078100 chr5B 87.065 201 22 3 982 1180 582578422 582578620 1.540000e-54 224.0
34 TraesCS4D01G078100 chr5B 89.720 107 11 0 1350 1456 90507905 90508011 2.070000e-28 137.0
35 TraesCS4D01G078100 chr5B 95.062 81 4 0 1273 1353 90507723 90507803 1.250000e-25 128.0
36 TraesCS4D01G078100 chr5B 94.444 54 2 1 3439 3491 222724783 222724836 9.840000e-12 82.4
37 TraesCS4D01G078100 chr5A 86.567 201 23 3 982 1180 594571025 594571223 7.190000e-53 219.0
38 TraesCS4D01G078100 chr5A 89.720 107 11 0 1350 1456 78158178 78158284 2.070000e-28 137.0
39 TraesCS4D01G078100 chr5A 95.062 81 4 0 1273 1353 78157975 78158055 1.250000e-25 128.0
40 TraesCS4D01G078100 chr5A 90.476 42 3 1 2142 2183 386868377 386868337 2.000000e-03 54.7
41 TraesCS4D01G078100 chr3D 91.358 81 7 0 1273 1353 487807613 487807693 1.250000e-20 111.0
42 TraesCS4D01G078100 chr3D 100.000 30 0 0 2154 2183 342663461 342663432 5.960000e-04 56.5
43 TraesCS4D01G078100 chr3D 100.000 30 0 0 2154 2183 358311656 358311685 5.960000e-04 56.5
44 TraesCS4D01G078100 chr3D 100.000 29 0 0 2155 2183 439952771 439952799 2.000000e-03 54.7
45 TraesCS4D01G078100 chr3B 91.358 81 7 0 1273 1353 650797563 650797643 1.250000e-20 111.0
46 TraesCS4D01G078100 chr3B 100.000 29 0 0 2155 2183 645078264 645078292 2.000000e-03 54.7
47 TraesCS4D01G078100 chr3A 91.358 81 7 0 1273 1353 631575995 631576075 1.250000e-20 111.0
48 TraesCS4D01G078100 chr7A 87.500 64 8 0 1592 1655 716239568 716239631 1.650000e-09 75.0
49 TraesCS4D01G078100 chr1B 100.000 32 0 0 2154 2185 336503345 336503376 4.610000e-05 60.2
50 TraesCS4D01G078100 chr6D 92.683 41 2 1 2143 2183 376709544 376709583 1.660000e-04 58.4
51 TraesCS4D01G078100 chr6B 94.737 38 1 1 2145 2182 53823481 53823517 1.660000e-04 58.4
52 TraesCS4D01G078100 chr6B 94.737 38 1 1 2145 2182 53824703 53824739 1.660000e-04 58.4
53 TraesCS4D01G078100 chr1A 92.683 41 2 1 2143 2183 286435758 286435719 1.660000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G078100 chr4D 52469721 52473989 4268 True 7884.00 7884 100.0000 1 4269 1 chr4D.!!$R1 4268
1 TraesCS4D01G078100 chr4B 76815651 76819873 4222 True 1286.75 3954 91.3625 303 4269 4 chr4B.!!$R1 3966
2 TraesCS4D01G078100 chr4A 544197845 544202033 4188 False 1187.50 1954 91.0855 303 4269 4 chr4A.!!$F1 3966

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.030235 GACCTTTTTGTGTGACGCCC 59.970 55.0 0.00 0.00 0.00 6.13 F
133 134 0.108377 ACACTGTGCAACGTCTCACA 60.108 50.0 17.98 17.98 42.39 3.58 F
1312 1362 0.107703 GCGGGAGATCATCAACCACA 60.108 55.0 0.00 0.00 0.00 4.17 F
1944 2114 0.034089 GGGGGTTATGCTCTGCTTGT 60.034 55.0 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1238 1288 0.036577 GCTCTTCAGCTCTGCTTCCA 60.037 55.0 0.00 0.0 43.09 3.53 R
1455 1505 0.765903 AGAGGATGATGGATGGGCGT 60.766 55.0 0.00 0.0 0.00 5.68 R
3184 3405 0.736325 CCATGTCGTCGTCAAGGTCC 60.736 60.0 5.71 0.0 0.00 4.46 R
3784 4126 0.899019 GACTTGGGTGGGAGAGAGAC 59.101 60.0 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.834628 TGACAAATTTGACCTATAAACGAAATC 57.165 29.630 24.64 6.30 0.00 2.17
33 34 9.834628 GACAAATTTGACCTATAAACGAAATCA 57.165 29.630 24.64 0.00 0.00 2.57
39 40 9.834628 TTTGACCTATAAACGAAATCAAATCAC 57.165 29.630 0.00 0.00 31.51 3.06
40 41 8.554835 TGACCTATAAACGAAATCAAATCACA 57.445 30.769 0.00 0.00 0.00 3.58
41 42 8.664798 TGACCTATAAACGAAATCAAATCACAG 58.335 33.333 0.00 0.00 0.00 3.66
42 43 8.786826 ACCTATAAACGAAATCAAATCACAGA 57.213 30.769 0.00 0.00 0.00 3.41
43 44 9.226606 ACCTATAAACGAAATCAAATCACAGAA 57.773 29.630 0.00 0.00 0.00 3.02
48 49 7.858052 AACGAAATCAAATCACAGAATGAAC 57.142 32.000 0.00 0.00 41.93 3.18
49 50 7.206981 ACGAAATCAAATCACAGAATGAACT 57.793 32.000 0.00 0.00 41.93 3.01
50 51 8.322906 ACGAAATCAAATCACAGAATGAACTA 57.677 30.769 0.00 0.00 41.93 2.24
51 52 8.950210 ACGAAATCAAATCACAGAATGAACTAT 58.050 29.630 0.00 0.00 41.93 2.12
52 53 9.778993 CGAAATCAAATCACAGAATGAACTATT 57.221 29.630 0.00 0.00 41.93 1.73
74 75 1.803334 TGAAACTATTTCACGCGGCT 58.197 45.000 12.47 0.00 44.21 5.52
75 76 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
76 77 1.730064 GAAACTATTTCACGCGGCTGA 59.270 47.619 12.47 2.44 39.45 4.26
77 78 1.076332 AACTATTTCACGCGGCTGAC 58.924 50.000 12.47 0.00 0.00 3.51
78 79 0.739813 ACTATTTCACGCGGCTGACC 60.740 55.000 12.47 0.00 0.00 4.02
79 80 0.460284 CTATTTCACGCGGCTGACCT 60.460 55.000 12.47 0.00 0.00 3.85
80 81 0.036765 TATTTCACGCGGCTGACCTT 60.037 50.000 12.47 0.00 0.00 3.50
81 82 0.889186 ATTTCACGCGGCTGACCTTT 60.889 50.000 12.47 0.00 0.00 3.11
82 83 1.098712 TTTCACGCGGCTGACCTTTT 61.099 50.000 12.47 0.00 0.00 2.27
83 84 1.098712 TTCACGCGGCTGACCTTTTT 61.099 50.000 12.47 0.00 0.00 1.94
84 85 1.370414 CACGCGGCTGACCTTTTTG 60.370 57.895 12.47 0.00 0.00 2.44
85 86 1.822186 ACGCGGCTGACCTTTTTGT 60.822 52.632 12.47 0.00 0.00 2.83
86 87 1.370414 CGCGGCTGACCTTTTTGTG 60.370 57.895 0.00 0.00 0.00 3.33
87 88 1.733526 GCGGCTGACCTTTTTGTGT 59.266 52.632 0.00 0.00 0.00 3.72
88 89 0.594796 GCGGCTGACCTTTTTGTGTG 60.595 55.000 0.00 0.00 0.00 3.82
89 90 1.021202 CGGCTGACCTTTTTGTGTGA 58.979 50.000 0.00 0.00 0.00 3.58
90 91 1.268539 CGGCTGACCTTTTTGTGTGAC 60.269 52.381 0.00 0.00 0.00 3.67
91 92 1.268539 GGCTGACCTTTTTGTGTGACG 60.269 52.381 0.00 0.00 0.00 4.35
92 93 1.859998 GCTGACCTTTTTGTGTGACGC 60.860 52.381 0.00 0.00 0.00 5.19
93 94 0.736053 TGACCTTTTTGTGTGACGCC 59.264 50.000 0.00 0.00 0.00 5.68
94 95 0.030235 GACCTTTTTGTGTGACGCCC 59.970 55.000 0.00 0.00 0.00 6.13
95 96 1.008995 CCTTTTTGTGTGACGCCCG 60.009 57.895 0.00 0.00 0.00 6.13
96 97 1.440938 CCTTTTTGTGTGACGCCCGA 61.441 55.000 0.00 0.00 0.00 5.14
97 98 0.316689 CTTTTTGTGTGACGCCCGAC 60.317 55.000 0.00 0.00 0.00 4.79
98 99 1.025113 TTTTTGTGTGACGCCCGACA 61.025 50.000 0.00 0.00 0.00 4.35
99 100 1.707239 TTTTGTGTGACGCCCGACAC 61.707 55.000 14.47 14.47 42.40 3.67
100 101 4.934942 TGTGTGACGCCCGACACG 62.935 66.667 15.80 0.00 44.55 4.49
101 102 4.634133 GTGTGACGCCCGACACGA 62.634 66.667 15.80 5.46 42.06 4.35
102 103 3.902086 TGTGACGCCCGACACGAA 61.902 61.111 15.80 0.31 42.06 3.85
103 104 3.103911 GTGACGCCCGACACGAAG 61.104 66.667 7.43 0.00 32.16 3.79
104 105 4.351938 TGACGCCCGACACGAAGG 62.352 66.667 0.00 0.00 0.00 3.46
112 113 3.712881 GACACGAAGGCGCCACAC 61.713 66.667 31.54 17.81 42.48 3.82
113 114 4.235762 ACACGAAGGCGCCACACT 62.236 61.111 31.54 9.96 42.48 3.55
114 115 2.048597 CACGAAGGCGCCACACTA 60.049 61.111 31.54 0.00 42.48 2.74
115 116 2.048503 ACGAAGGCGCCACACTAC 60.049 61.111 31.54 11.50 42.48 2.73
116 117 2.048597 CGAAGGCGCCACACTACA 60.049 61.111 31.54 0.00 0.00 2.74
117 118 2.380410 CGAAGGCGCCACACTACAC 61.380 63.158 31.54 8.98 0.00 2.90
118 119 1.004918 GAAGGCGCCACACTACACT 60.005 57.895 31.54 0.00 0.00 3.55
119 120 1.291877 GAAGGCGCCACACTACACTG 61.292 60.000 31.54 0.00 0.00 3.66
120 121 2.030562 GGCGCCACACTACACTGT 59.969 61.111 24.80 0.00 0.00 3.55
121 122 2.317609 GGCGCCACACTACACTGTG 61.318 63.158 24.80 6.19 41.19 3.66
122 123 2.954753 GCGCCACACTACACTGTGC 61.955 63.158 7.90 0.00 40.33 4.57
123 124 1.594021 CGCCACACTACACTGTGCA 60.594 57.895 7.90 0.00 40.33 4.57
124 125 1.157257 CGCCACACTACACTGTGCAA 61.157 55.000 7.90 0.00 40.33 4.08
125 126 0.307760 GCCACACTACACTGTGCAAC 59.692 55.000 7.90 0.00 40.33 4.17
126 127 0.581529 CCACACTACACTGTGCAACG 59.418 55.000 7.90 0.00 42.39 4.10
127 128 1.286501 CACACTACACTGTGCAACGT 58.713 50.000 7.90 0.00 42.39 3.99
128 129 1.257936 CACACTACACTGTGCAACGTC 59.742 52.381 7.90 0.00 42.39 4.34
129 130 1.136305 ACACTACACTGTGCAACGTCT 59.864 47.619 7.90 0.00 42.39 4.18
130 131 1.787155 CACTACACTGTGCAACGTCTC 59.213 52.381 7.90 0.00 42.39 3.36
131 132 1.407618 ACTACACTGTGCAACGTCTCA 59.592 47.619 7.90 0.00 42.39 3.27
132 133 1.787155 CTACACTGTGCAACGTCTCAC 59.213 52.381 7.90 11.76 42.39 3.51
133 134 0.108377 ACACTGTGCAACGTCTCACA 60.108 50.000 17.98 17.98 42.39 3.58
136 137 3.986970 TGTGCAACGTCTCACAGAT 57.013 47.368 15.93 0.00 42.39 2.90
138 139 2.946564 TGTGCAACGTCTCACAGATAG 58.053 47.619 15.93 0.00 42.39 2.08
139 140 2.556622 TGTGCAACGTCTCACAGATAGA 59.443 45.455 15.93 0.00 42.39 1.98
140 141 2.917971 GTGCAACGTCTCACAGATAGAC 59.082 50.000 13.26 0.00 40.01 2.59
147 148 3.942739 GTCTCACAGATAGACGCTACAC 58.057 50.000 0.00 0.00 34.50 2.90
173 174 2.261361 TCGCACCCGTGTGATCAG 59.739 61.111 0.90 0.00 45.76 2.90
174 175 2.261361 CGCACCCGTGTGATCAGA 59.739 61.111 0.90 0.00 45.76 3.27
175 176 1.374125 CGCACCCGTGTGATCAGAA 60.374 57.895 0.90 0.00 45.76 3.02
176 177 0.948623 CGCACCCGTGTGATCAGAAA 60.949 55.000 0.90 0.00 45.76 2.52
177 178 1.234821 GCACCCGTGTGATCAGAAAA 58.765 50.000 0.90 0.00 45.76 2.29
178 179 1.812571 GCACCCGTGTGATCAGAAAAT 59.187 47.619 0.90 0.00 45.76 1.82
179 180 2.228822 GCACCCGTGTGATCAGAAAATT 59.771 45.455 0.90 0.00 45.76 1.82
180 181 3.438781 GCACCCGTGTGATCAGAAAATTA 59.561 43.478 0.90 0.00 45.76 1.40
181 182 4.671766 GCACCCGTGTGATCAGAAAATTAC 60.672 45.833 0.90 0.00 45.76 1.89
182 183 4.695455 CACCCGTGTGATCAGAAAATTACT 59.305 41.667 0.00 0.00 45.76 2.24
183 184 5.872617 CACCCGTGTGATCAGAAAATTACTA 59.127 40.000 0.00 0.00 45.76 1.82
184 185 6.370442 CACCCGTGTGATCAGAAAATTACTAA 59.630 38.462 0.00 0.00 45.76 2.24
185 186 6.594159 ACCCGTGTGATCAGAAAATTACTAAG 59.406 38.462 0.00 0.00 0.00 2.18
186 187 6.594159 CCCGTGTGATCAGAAAATTACTAAGT 59.406 38.462 0.00 0.00 0.00 2.24
187 188 7.201530 CCCGTGTGATCAGAAAATTACTAAGTC 60.202 40.741 0.00 0.00 0.00 3.01
188 189 7.330946 CCGTGTGATCAGAAAATTACTAAGTCA 59.669 37.037 0.00 0.00 0.00 3.41
189 190 8.376203 CGTGTGATCAGAAAATTACTAAGTCAG 58.624 37.037 0.00 0.00 0.00 3.51
190 191 9.209175 GTGTGATCAGAAAATTACTAAGTCAGT 57.791 33.333 0.00 0.00 41.62 3.41
191 192 9.208022 TGTGATCAGAAAATTACTAAGTCAGTG 57.792 33.333 0.00 0.00 38.24 3.66
192 193 9.209175 GTGATCAGAAAATTACTAAGTCAGTGT 57.791 33.333 0.00 0.00 38.24 3.55
196 197 9.692749 TCAGAAAATTACTAAGTCAGTGTACAG 57.307 33.333 0.00 0.00 38.24 2.74
197 198 8.436200 CAGAAAATTACTAAGTCAGTGTACAGC 58.564 37.037 0.00 0.00 38.24 4.40
198 199 6.946229 AAATTACTAAGTCAGTGTACAGCG 57.054 37.500 0.00 0.00 38.24 5.18
199 200 2.349297 ACTAAGTCAGTGTACAGCGC 57.651 50.000 0.00 0.00 35.62 5.92
200 201 1.067776 ACTAAGTCAGTGTACAGCGCC 60.068 52.381 2.29 0.00 35.62 6.53
201 202 1.202582 CTAAGTCAGTGTACAGCGCCT 59.797 52.381 2.29 0.00 0.00 5.52
202 203 0.319900 AAGTCAGTGTACAGCGCCTG 60.320 55.000 2.29 2.76 37.52 4.85
203 204 1.179174 AGTCAGTGTACAGCGCCTGA 61.179 55.000 2.29 5.63 35.18 3.86
204 205 0.734253 GTCAGTGTACAGCGCCTGAG 60.734 60.000 12.73 0.00 35.18 3.35
205 206 0.893727 TCAGTGTACAGCGCCTGAGA 60.894 55.000 2.29 0.00 35.18 3.27
206 207 0.457509 CAGTGTACAGCGCCTGAGAG 60.458 60.000 2.29 0.00 35.18 3.20
207 208 1.807573 GTGTACAGCGCCTGAGAGC 60.808 63.158 2.29 0.00 39.42 4.09
216 217 3.150335 CCTGAGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69
217 218 2.105930 CTGAGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
218 219 3.764810 CTGAGAGCTAGGCGCCACG 62.765 68.421 31.54 19.97 40.39 4.94
219 220 4.577246 GAGAGCTAGGCGCCACGG 62.577 72.222 31.54 18.60 40.39 4.94
224 225 4.514577 CTAGGCGCCACGGGTCAG 62.515 72.222 31.54 9.46 0.00 3.51
235 236 2.746277 GGGTCAGCCGCGTGAAAT 60.746 61.111 4.92 0.00 34.97 2.17
236 237 1.448893 GGGTCAGCCGCGTGAAATA 60.449 57.895 4.92 0.00 34.97 1.40
237 238 1.429148 GGGTCAGCCGCGTGAAATAG 61.429 60.000 4.92 0.00 34.97 1.73
238 239 0.739813 GGTCAGCCGCGTGAAATAGT 60.740 55.000 4.92 0.00 0.00 2.12
239 240 1.076332 GTCAGCCGCGTGAAATAGTT 58.924 50.000 4.92 0.00 0.00 2.24
240 241 1.463444 GTCAGCCGCGTGAAATAGTTT 59.537 47.619 4.92 0.00 0.00 2.66
241 242 2.669434 GTCAGCCGCGTGAAATAGTTTA 59.331 45.455 4.92 0.00 0.00 2.01
242 243 2.669434 TCAGCCGCGTGAAATAGTTTAC 59.331 45.455 4.92 0.00 0.00 2.01
243 244 1.657094 AGCCGCGTGAAATAGTTTACG 59.343 47.619 14.84 14.84 39.37 3.18
244 245 1.267186 GCCGCGTGAAATAGTTTACGG 60.267 52.381 19.53 11.18 42.19 4.02
245 246 2.261345 CCGCGTGAAATAGTTTACGGA 58.739 47.619 19.53 0.00 41.86 4.69
246 247 2.028404 CCGCGTGAAATAGTTTACGGAC 59.972 50.000 19.53 5.33 41.86 4.79
247 248 2.662637 CGCGTGAAATAGTTTACGGACA 59.337 45.455 19.53 0.00 37.06 4.02
248 249 3.241552 CGCGTGAAATAGTTTACGGACAG 60.242 47.826 19.53 0.00 37.06 3.51
249 250 3.676646 GCGTGAAATAGTTTACGGACAGT 59.323 43.478 19.53 0.00 37.06 3.55
250 251 4.151157 GCGTGAAATAGTTTACGGACAGTT 59.849 41.667 19.53 0.00 37.06 3.16
251 252 5.667156 GCGTGAAATAGTTTACGGACAGTTC 60.667 44.000 19.53 0.23 37.06 3.01
252 253 5.403166 CGTGAAATAGTTTACGGACAGTTCA 59.597 40.000 11.81 0.00 33.27 3.18
253 254 6.090358 CGTGAAATAGTTTACGGACAGTTCAT 59.910 38.462 11.81 0.00 33.27 2.57
254 255 7.359765 CGTGAAATAGTTTACGGACAGTTCATT 60.360 37.037 11.81 0.00 33.27 2.57
255 256 7.955864 GTGAAATAGTTTACGGACAGTTCATTC 59.044 37.037 0.00 0.00 0.00 2.67
256 257 7.876068 TGAAATAGTTTACGGACAGTTCATTCT 59.124 33.333 0.00 0.00 0.00 2.40
257 258 7.596749 AATAGTTTACGGACAGTTCATTCTG 57.403 36.000 0.00 0.00 40.80 3.02
259 260 4.750098 AGTTTACGGACAGTTCATTCTGTG 59.250 41.667 4.06 0.00 46.81 3.66
260 261 4.594123 TTACGGACAGTTCATTCTGTGA 57.406 40.909 4.06 0.00 46.81 3.58
261 262 3.685139 ACGGACAGTTCATTCTGTGAT 57.315 42.857 4.06 0.00 46.81 3.06
262 263 4.008074 ACGGACAGTTCATTCTGTGATT 57.992 40.909 4.06 0.00 46.81 2.57
263 264 4.389374 ACGGACAGTTCATTCTGTGATTT 58.611 39.130 4.06 0.00 46.81 2.17
264 265 4.214119 ACGGACAGTTCATTCTGTGATTTG 59.786 41.667 4.06 0.00 46.81 2.32
265 266 4.452114 CGGACAGTTCATTCTGTGATTTGA 59.548 41.667 4.06 0.00 46.81 2.69
266 267 5.122869 CGGACAGTTCATTCTGTGATTTGAT 59.877 40.000 4.06 0.00 46.81 2.57
267 268 6.348786 CGGACAGTTCATTCTGTGATTTGATT 60.349 38.462 4.06 0.00 46.81 2.57
268 269 7.373493 GGACAGTTCATTCTGTGATTTGATTT 58.627 34.615 4.06 0.00 46.81 2.17
269 270 7.540055 GGACAGTTCATTCTGTGATTTGATTTC 59.460 37.037 4.06 0.00 46.81 2.17
270 271 7.080099 ACAGTTCATTCTGTGATTTGATTTCG 58.920 34.615 0.00 0.00 45.40 3.46
271 272 7.080099 CAGTTCATTCTGTGATTTGATTTCGT 58.920 34.615 0.00 0.00 36.54 3.85
272 273 7.269937 CAGTTCATTCTGTGATTTGATTTCGTC 59.730 37.037 0.00 0.00 36.54 4.20
273 274 7.173907 AGTTCATTCTGTGATTTGATTTCGTCT 59.826 33.333 0.00 0.00 36.54 4.18
274 275 8.443160 GTTCATTCTGTGATTTGATTTCGTCTA 58.557 33.333 0.00 0.00 36.54 2.59
275 276 8.722480 TCATTCTGTGATTTGATTTCGTCTAT 57.278 30.769 0.00 0.00 0.00 1.98
276 277 9.816354 TCATTCTGTGATTTGATTTCGTCTATA 57.184 29.630 0.00 0.00 0.00 1.31
278 279 8.648557 TTCTGTGATTTGATTTCGTCTATAGG 57.351 34.615 0.00 0.00 0.00 2.57
279 280 7.782049 TCTGTGATTTGATTTCGTCTATAGGT 58.218 34.615 0.00 0.00 0.00 3.08
280 281 7.921214 TCTGTGATTTGATTTCGTCTATAGGTC 59.079 37.037 0.00 0.00 0.00 3.85
281 282 7.552459 TGTGATTTGATTTCGTCTATAGGTCA 58.448 34.615 0.00 0.00 0.00 4.02
282 283 8.038351 TGTGATTTGATTTCGTCTATAGGTCAA 58.962 33.333 0.00 0.00 0.00 3.18
283 284 8.879759 GTGATTTGATTTCGTCTATAGGTCAAA 58.120 33.333 0.00 7.93 38.14 2.69
284 285 9.613428 TGATTTGATTTCGTCTATAGGTCAAAT 57.387 29.630 17.06 17.06 43.48 2.32
288 289 8.786826 TGATTTCGTCTATAGGTCAAATTTGT 57.213 30.769 17.47 1.67 0.00 2.83
289 290 8.879759 TGATTTCGTCTATAGGTCAAATTTGTC 58.120 33.333 17.47 12.07 0.00 3.18
290 291 8.786826 ATTTCGTCTATAGGTCAAATTTGTCA 57.213 30.769 17.47 0.00 0.00 3.58
291 292 8.610248 TTTCGTCTATAGGTCAAATTTGTCAA 57.390 30.769 17.47 5.31 0.00 3.18
292 293 8.610248 TTCGTCTATAGGTCAAATTTGTCAAA 57.390 30.769 17.47 0.00 0.00 2.69
293 294 8.786826 TCGTCTATAGGTCAAATTTGTCAAAT 57.213 30.769 17.47 4.91 0.00 2.32
294 295 9.226606 TCGTCTATAGGTCAAATTTGTCAAATT 57.773 29.630 16.26 16.26 42.62 1.82
343 344 3.497584 CCCCTCCAGATATTTTCAGCCTC 60.498 52.174 0.00 0.00 0.00 4.70
344 345 3.497584 CCCTCCAGATATTTTCAGCCTCC 60.498 52.174 0.00 0.00 0.00 4.30
345 346 3.497584 CCTCCAGATATTTTCAGCCTCCC 60.498 52.174 0.00 0.00 0.00 4.30
346 347 2.443255 TCCAGATATTTTCAGCCTCCCC 59.557 50.000 0.00 0.00 0.00 4.81
347 348 2.444766 CCAGATATTTTCAGCCTCCCCT 59.555 50.000 0.00 0.00 0.00 4.79
348 349 3.497584 CCAGATATTTTCAGCCTCCCCTC 60.498 52.174 0.00 0.00 0.00 4.30
349 350 2.713708 AGATATTTTCAGCCTCCCCTCC 59.286 50.000 0.00 0.00 0.00 4.30
350 351 1.222567 TATTTTCAGCCTCCCCTCCC 58.777 55.000 0.00 0.00 0.00 4.30
351 352 1.584717 ATTTTCAGCCTCCCCTCCCC 61.585 60.000 0.00 0.00 0.00 4.81
352 353 4.760220 TTCAGCCTCCCCTCCCCC 62.760 72.222 0.00 0.00 0.00 5.40
459 472 4.365505 TCATTGACCGACGCCGCA 62.366 61.111 0.00 0.00 0.00 5.69
477 490 2.874664 ATACGTGCACACCACCGGT 61.875 57.895 18.64 0.00 41.53 5.28
621 638 1.592669 CTGGATAGTTCGCCTGCGG 60.593 63.158 12.06 0.00 40.25 5.69
674 691 2.804931 CGATCACGCACGCACAGA 60.805 61.111 0.00 0.00 0.00 3.41
675 692 2.782045 CGATCACGCACGCACAGAG 61.782 63.158 0.00 0.00 0.00 3.35
676 693 1.444383 GATCACGCACGCACAGAGA 60.444 57.895 0.00 0.00 0.00 3.10
682 699 2.378858 GCACGCACAGAGAGACAGC 61.379 63.158 0.00 0.00 0.00 4.40
813 848 0.988145 TTCTCCTCCGCCCAATCCAT 60.988 55.000 0.00 0.00 0.00 3.41
814 849 1.072159 CTCCTCCGCCCAATCCATC 59.928 63.158 0.00 0.00 0.00 3.51
819 859 2.275089 CGCCCAATCCATCCCACA 59.725 61.111 0.00 0.00 0.00 4.17
854 894 0.179702 GGTGGAGCTCATCATCAGCA 59.820 55.000 17.19 0.00 39.56 4.41
855 895 1.584175 GTGGAGCTCATCATCAGCAG 58.416 55.000 17.19 0.00 39.56 4.24
856 896 0.179054 TGGAGCTCATCATCAGCAGC 60.179 55.000 17.19 0.00 39.56 5.25
984 1031 4.062032 GTGGGGGAAGGGAAGGGC 62.062 72.222 0.00 0.00 0.00 5.19
987 1034 3.744155 GGGGAAGGGAAGGGCAGG 61.744 72.222 0.00 0.00 0.00 4.85
989 1036 2.614013 GGAAGGGAAGGGCAGGGA 60.614 66.667 0.00 0.00 0.00 4.20
990 1037 2.238701 GGAAGGGAAGGGCAGGGAA 61.239 63.158 0.00 0.00 0.00 3.97
1202 1252 9.341078 GGTACTTCTACTATTGCTCTTACTACT 57.659 37.037 0.00 0.00 0.00 2.57
1218 1268 9.116067 CTCTTACTACTAGAGCATCACTAGTTT 57.884 37.037 11.80 4.34 45.24 2.66
1238 1288 0.911769 TTCATCTTCCTGCACGGGAT 59.088 50.000 0.00 0.00 35.07 3.85
1243 1293 0.745845 CTTCCTGCACGGGATGGAAG 60.746 60.000 19.74 19.74 46.11 3.46
1312 1362 0.107703 GCGGGAGATCATCAACCACA 60.108 55.000 0.00 0.00 0.00 4.17
1455 1505 1.310933 GGTTCAGCGAGGACGAGGTA 61.311 60.000 0.00 0.00 42.66 3.08
1479 1529 1.907936 CCATCCATCATCCTCTCCCTC 59.092 57.143 0.00 0.00 0.00 4.30
1492 1542 2.280079 CCCTCCCTTTCCATGCCC 59.720 66.667 0.00 0.00 0.00 5.36
1498 1548 1.227102 CCTTTCCATGCCCCATCGA 59.773 57.895 0.00 0.00 0.00 3.59
1558 1608 4.260132 CGTACGTGGACTACTACTGATCAC 60.260 50.000 7.22 0.00 0.00 3.06
1671 1721 2.707257 TGGTACTCTTTCCTTTTCGGGT 59.293 45.455 0.00 0.00 0.00 5.28
1690 1740 4.322499 CGGGTGATTCCACAGTTAGTTAGT 60.322 45.833 0.00 0.00 44.93 2.24
1707 1757 5.495640 AGTTAGTCTGTTACGGTAGCTACT 58.504 41.667 22.74 7.33 0.00 2.57
1722 1772 7.093596 ACGGTAGCTACTACTAAAATGGTTTCT 60.094 37.037 22.74 0.00 37.16 2.52
1771 1821 2.147150 GACTTGAAGCTGGAGAACACC 58.853 52.381 0.00 0.00 0.00 4.16
1840 2005 5.116882 GGCTATTCCAAGGTACAGTACTTG 58.883 45.833 10.62 11.76 42.77 3.16
1893 2060 1.202452 AGGCTTGCAGTTTTCAGCAAC 60.202 47.619 8.01 0.00 44.95 4.17
1900 2067 2.540931 GCAGTTTTCAGCAACCAACATG 59.459 45.455 0.00 0.00 32.46 3.21
1903 2070 4.268405 CAGTTTTCAGCAACCAACATGTTC 59.732 41.667 8.48 0.00 0.00 3.18
1944 2114 0.034089 GGGGGTTATGCTCTGCTTGT 60.034 55.000 0.00 0.00 0.00 3.16
1961 2135 4.229876 GCTTGTCATCCTAGTTTTTGTGC 58.770 43.478 0.00 0.00 0.00 4.57
1974 2148 2.684001 TTTGTGCCCTAGTGTATCGG 57.316 50.000 0.00 0.00 0.00 4.18
2003 2177 3.797451 TCTGCTCATTGTTGTTTTGCA 57.203 38.095 0.00 0.00 0.00 4.08
2005 2179 5.450592 TCTGCTCATTGTTGTTTTGCATA 57.549 34.783 0.00 0.00 0.00 3.14
2007 2181 6.457355 TCTGCTCATTGTTGTTTTGCATATT 58.543 32.000 0.00 0.00 0.00 1.28
2122 2297 7.611467 GGAATATGATGGAAAGGTATGCATACA 59.389 37.037 32.19 15.43 34.98 2.29
2180 2355 0.106918 GCATATTTCGGTGGGGTCCA 60.107 55.000 0.00 0.00 0.00 4.02
2185 2360 1.333177 TTTCGGTGGGGTCCAAAATG 58.667 50.000 0.00 0.00 34.18 2.32
2205 2380 7.422465 AAATGCTTATAGCCCTGAAATTTCA 57.578 32.000 19.45 19.45 41.51 2.69
2221 2396 8.235359 TGAAATTTCAAGCCCAATTCAAATTT 57.765 26.923 18.45 0.00 36.57 1.82
2268 2453 9.677567 TTTATTTAATCTGAAAACTCACAGTGC 57.322 29.630 0.00 0.00 35.84 4.40
2269 2454 3.885484 AATCTGAAAACTCACAGTGCG 57.115 42.857 0.00 0.00 35.84 5.34
2270 2455 2.595124 TCTGAAAACTCACAGTGCGA 57.405 45.000 0.00 0.00 35.84 5.10
2271 2456 2.899976 TCTGAAAACTCACAGTGCGAA 58.100 42.857 0.00 0.00 35.84 4.70
2272 2457 3.266636 TCTGAAAACTCACAGTGCGAAA 58.733 40.909 0.00 0.00 35.84 3.46
2273 2458 3.876914 TCTGAAAACTCACAGTGCGAAAT 59.123 39.130 0.00 0.00 35.84 2.17
2274 2459 5.053811 TCTGAAAACTCACAGTGCGAAATA 58.946 37.500 0.00 0.00 35.84 1.40
2275 2460 5.525745 TCTGAAAACTCACAGTGCGAAATAA 59.474 36.000 0.00 0.00 35.84 1.40
2276 2461 6.204688 TCTGAAAACTCACAGTGCGAAATAAT 59.795 34.615 0.00 0.00 35.84 1.28
2277 2462 6.734137 TGAAAACTCACAGTGCGAAATAATT 58.266 32.000 0.00 0.00 0.00 1.40
2278 2463 6.855914 TGAAAACTCACAGTGCGAAATAATTC 59.144 34.615 0.00 0.00 0.00 2.17
2279 2464 4.946784 ACTCACAGTGCGAAATAATTCC 57.053 40.909 0.00 0.00 31.52 3.01
2280 2465 4.579869 ACTCACAGTGCGAAATAATTCCT 58.420 39.130 0.00 0.00 31.52 3.36
2281 2466 4.393062 ACTCACAGTGCGAAATAATTCCTG 59.607 41.667 0.00 0.00 32.11 3.86
2282 2467 4.574892 TCACAGTGCGAAATAATTCCTGA 58.425 39.130 0.00 0.00 31.05 3.86
2285 2470 6.150976 TCACAGTGCGAAATAATTCCTGAAAT 59.849 34.615 0.00 0.00 31.05 2.17
2291 2476 6.142817 GCGAAATAATTCCTGAAATATGCGT 58.857 36.000 0.00 0.00 31.52 5.24
2323 2521 8.451687 TTCTGAAATGTGCGAAATTTTATCTG 57.548 30.769 0.00 0.00 0.00 2.90
2336 2534 1.771565 TTATCTGGGTGACGTCCGAT 58.228 50.000 14.12 9.38 0.00 4.18
2389 2587 4.321452 CCTTGATGCATACATATTGGTGCC 60.321 45.833 0.00 0.00 36.35 5.01
2451 2656 8.254508 TGTTGTTTTATCTAATGTTTATGCCCC 58.745 33.333 0.00 0.00 0.00 5.80
2459 2664 7.169158 TCTAATGTTTATGCCCCTTTTTCTG 57.831 36.000 0.00 0.00 0.00 3.02
2517 2722 4.097286 TCCATTTGTGAGATGCATGATGTG 59.903 41.667 2.46 0.00 0.00 3.21
2521 2726 7.040961 CCATTTGTGAGATGCATGATGTGTATA 60.041 37.037 2.46 0.00 32.93 1.47
2522 2727 8.512138 CATTTGTGAGATGCATGATGTGTATAT 58.488 33.333 2.46 0.00 32.93 0.86
2523 2728 9.729281 ATTTGTGAGATGCATGATGTGTATATA 57.271 29.630 2.46 0.00 32.93 0.86
2524 2729 9.558396 TTTGTGAGATGCATGATGTGTATATAA 57.442 29.630 2.46 0.00 32.93 0.98
2525 2730 9.729281 TTGTGAGATGCATGATGTGTATATAAT 57.271 29.630 2.46 0.00 32.93 1.28
2526 2731 9.158233 TGTGAGATGCATGATGTGTATATAATG 57.842 33.333 2.46 0.00 32.93 1.90
2527 2732 9.374838 GTGAGATGCATGATGTGTATATAATGA 57.625 33.333 2.46 0.00 32.93 2.57
2528 2733 9.595823 TGAGATGCATGATGTGTATATAATGAG 57.404 33.333 2.46 0.00 32.93 2.90
2552 2757 4.477581 TCCCATGGTACTACTAGACTCTGT 59.522 45.833 11.73 0.00 0.00 3.41
2588 2798 4.933505 AGTTACCTACCGCTAATCCTTC 57.066 45.455 0.00 0.00 0.00 3.46
2729 2941 0.394899 CAGGTTCCCATTCTGAGCCC 60.395 60.000 0.00 0.00 33.94 5.19
2750 2962 5.221322 GCCCATCTTAATTTCTTGACCATCC 60.221 44.000 0.00 0.00 0.00 3.51
2756 2968 7.695055 TCTTAATTTCTTGACCATCCCTGTTA 58.305 34.615 0.00 0.00 0.00 2.41
2765 2977 3.356290 ACCATCCCTGTTATTGTTCTGC 58.644 45.455 0.00 0.00 0.00 4.26
2905 3117 2.098770 CCCAGCTACCGTGAGTACTTAC 59.901 54.545 7.71 7.71 0.00 2.34
2924 3136 6.091437 ACTTACTACCAAGATTTTCGAGTCG 58.909 40.000 6.09 6.09 0.00 4.18
2946 3158 6.587990 GTCGCTATATGTTGCATACAGATTCT 59.412 38.462 12.22 0.00 39.34 2.40
2995 3216 2.028420 TGCAGAGAATCACAATCCCG 57.972 50.000 0.00 0.00 37.82 5.14
3043 3264 0.413832 AGAACCTCCCAGCTGACCTA 59.586 55.000 17.39 0.00 0.00 3.08
3170 3391 1.003233 GTTCCCGGATCAACCAGTTCT 59.997 52.381 0.73 0.00 38.90 3.01
3184 3405 1.787155 CAGTTCTTGAACGACGGTCTG 59.213 52.381 15.00 7.26 0.00 3.51
3270 3491 5.243954 GGGAGATAGTGTATGCTATGTGACA 59.756 44.000 0.00 0.00 32.32 3.58
3359 3641 3.877508 ACTTTGTTGTAGTTGGTCTCTGC 59.122 43.478 0.00 0.00 0.00 4.26
3415 3697 1.956477 GGATGTGACCTTGTGTTGCTT 59.044 47.619 0.00 0.00 0.00 3.91
3429 3711 2.129607 GTTGCTTCAATGCTGTGTTGG 58.870 47.619 0.00 0.00 0.00 3.77
3477 3762 2.099263 AGATCATCTGTAACCCGTGTCG 59.901 50.000 0.00 0.00 0.00 4.35
3544 3829 6.451393 AGAGACACTACAGTTTGATCAGTTC 58.549 40.000 0.00 0.00 0.00 3.01
3546 3831 5.070446 AGACACTACAGTTTGATCAGTTCCA 59.930 40.000 0.00 0.00 0.00 3.53
3613 3942 4.696877 TGGTTCTTGCTATGATTCAGTGTG 59.303 41.667 0.00 0.00 0.00 3.82
3644 3984 1.757306 CAGGGTTCCAGTGCACTCT 59.243 57.895 18.64 7.07 0.00 3.24
3654 3994 3.194329 TCCAGTGCACTCTGTTCAGATAG 59.806 47.826 18.64 0.44 34.02 2.08
3655 3995 2.928757 CAGTGCACTCTGTTCAGATAGC 59.071 50.000 18.64 14.98 0.00 2.97
3695 4037 7.756272 TGAGCAATTTTGAGTTGTGCATATTAG 59.244 33.333 0.00 0.00 37.68 1.73
3696 4038 6.532657 AGCAATTTTGAGTTGTGCATATTAGC 59.467 34.615 0.00 0.00 37.68 3.09
3727 4069 1.274728 AGCATATCGTGGGCTCATCTC 59.725 52.381 0.00 0.00 30.74 2.75
3784 4126 5.474532 TGAACCATTGTGGAATCTTTCTCTG 59.525 40.000 2.45 0.00 40.96 3.35
3793 4141 4.709397 TGGAATCTTTCTCTGTCTCTCTCC 59.291 45.833 0.00 0.00 0.00 3.71
3795 4143 3.816398 TCTTTCTCTGTCTCTCTCCCA 57.184 47.619 0.00 0.00 0.00 4.37
3804 4152 0.612174 TCTCTCTCCCACCCAAGTCG 60.612 60.000 0.00 0.00 0.00 4.18
3805 4153 0.900647 CTCTCTCCCACCCAAGTCGT 60.901 60.000 0.00 0.00 0.00 4.34
3839 4218 0.037605 GATAACGATAGGGCCACGGG 60.038 60.000 18.42 3.42 43.77 5.28
3874 4253 2.548295 GGCGCCTCGTCAACCAAAA 61.548 57.895 22.15 0.00 0.00 2.44
3875 4254 1.357334 GCGCCTCGTCAACCAAAAA 59.643 52.632 0.00 0.00 0.00 1.94
3913 4324 6.723977 AGCCAGATTAACAAAATAACCCAGAA 59.276 34.615 0.00 0.00 0.00 3.02
3914 4325 7.400052 AGCCAGATTAACAAAATAACCCAGAAT 59.600 33.333 0.00 0.00 0.00 2.40
3935 4346 9.991906 CAGAATAATCTCCCAAATTATGCAAAT 57.008 29.630 0.00 0.00 32.03 2.32
3936 4347 9.991906 AGAATAATCTCCCAAATTATGCAAATG 57.008 29.630 0.00 0.00 30.05 2.32
3941 4352 5.601729 TCTCCCAAATTATGCAAATGCCATA 59.398 36.000 2.46 0.00 41.18 2.74
3943 4354 5.601729 TCCCAAATTATGCAAATGCCATAGA 59.398 36.000 2.46 0.00 41.18 1.98
3953 4369 6.063404 TGCAAATGCCATAGATCATACTTCA 58.937 36.000 2.46 0.00 41.18 3.02
3955 4371 6.569226 GCAAATGCCATAGATCATACTTCACC 60.569 42.308 0.00 0.00 34.31 4.02
3974 4390 1.829222 CCAAGAAGCATTTGGCCATCT 59.171 47.619 6.09 1.34 46.50 2.90
3975 4391 2.159142 CCAAGAAGCATTTGGCCATCTC 60.159 50.000 6.09 0.00 46.50 2.75
3976 4392 2.494471 CAAGAAGCATTTGGCCATCTCA 59.506 45.455 6.09 0.00 46.50 3.27
3977 4393 3.028094 AGAAGCATTTGGCCATCTCAT 57.972 42.857 6.09 0.00 46.50 2.90
3979 4395 2.154567 AGCATTTGGCCATCTCATGT 57.845 45.000 6.09 0.00 46.50 3.21
3990 4534 4.469227 GGCCATCTCATGTAGGAGTATCAT 59.531 45.833 0.00 0.00 36.25 2.45
3991 4535 5.046014 GGCCATCTCATGTAGGAGTATCATT 60.046 44.000 0.00 0.00 36.25 2.57
4015 4560 2.097466 ACTGAAAGCACAAAACTCCACG 59.903 45.455 0.00 0.00 37.60 4.94
4020 4565 0.869880 GCACAAAACTCCACGGCAAC 60.870 55.000 0.00 0.00 0.00 4.17
4037 4582 2.427095 GCAACCCTGGATTATTGTCACC 59.573 50.000 0.00 0.00 0.00 4.02
4047 4592 4.949856 GGATTATTGTCACCAACTCACCAT 59.050 41.667 0.00 0.00 32.26 3.55
4071 4616 1.600957 CTCCATACATCAAGCAAGCCG 59.399 52.381 0.00 0.00 0.00 5.52
4092 4638 6.062021 GCCGTTATTCGAAAACAAAAACATG 58.938 36.000 0.00 0.00 42.86 3.21
4129 4675 3.311871 CACAGGCAGCATGATCTAAAGTC 59.688 47.826 15.39 0.00 39.69 3.01
4137 4684 4.080863 AGCATGATCTAAAGTCGAAACCCT 60.081 41.667 0.00 0.00 0.00 4.34
4140 4687 5.477607 TGATCTAAAGTCGAAACCCTTCA 57.522 39.130 0.00 0.00 0.00 3.02
4141 4688 5.235516 TGATCTAAAGTCGAAACCCTTCAC 58.764 41.667 0.00 0.00 0.00 3.18
4142 4689 4.950205 TCTAAAGTCGAAACCCTTCACT 57.050 40.909 0.00 0.00 0.00 3.41
4199 4747 1.814394 TCCAGAGCAAACACATCATGC 59.186 47.619 0.00 0.00 40.34 4.06
4224 4772 2.231964 CACCAAGGGATTGAACACATGG 59.768 50.000 0.00 0.00 0.00 3.66
4242 4790 2.171725 GCCGACGAATAGCACCACC 61.172 63.158 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.834628 GATTTCGTTTATAGGTCAAATTTGTCA 57.165 29.630 17.47 0.00 0.00 3.58
7 8 9.834628 TGATTTCGTTTATAGGTCAAATTTGTC 57.165 29.630 17.47 12.07 0.00 3.18
13 14 9.834628 GTGATTTGATTTCGTTTATAGGTCAAA 57.165 29.630 0.00 0.00 38.14 2.69
14 15 9.004717 TGTGATTTGATTTCGTTTATAGGTCAA 57.995 29.630 0.00 0.00 0.00 3.18
15 16 8.554835 TGTGATTTGATTTCGTTTATAGGTCA 57.445 30.769 0.00 0.00 0.00 4.02
16 17 8.879759 TCTGTGATTTGATTTCGTTTATAGGTC 58.120 33.333 0.00 0.00 0.00 3.85
17 18 8.786826 TCTGTGATTTGATTTCGTTTATAGGT 57.213 30.769 0.00 0.00 0.00 3.08
22 23 9.393249 GTTCATTCTGTGATTTGATTTCGTTTA 57.607 29.630 0.00 0.00 36.54 2.01
23 24 8.137437 AGTTCATTCTGTGATTTGATTTCGTTT 58.863 29.630 0.00 0.00 36.54 3.60
24 25 7.651808 AGTTCATTCTGTGATTTGATTTCGTT 58.348 30.769 0.00 0.00 36.54 3.85
25 26 7.206981 AGTTCATTCTGTGATTTGATTTCGT 57.793 32.000 0.00 0.00 36.54 3.85
26 27 9.778993 AATAGTTCATTCTGTGATTTGATTTCG 57.221 29.630 0.00 0.00 36.54 3.46
28 29 9.778993 CGAATAGTTCATTCTGTGATTTGATTT 57.221 29.630 0.00 0.00 40.89 2.17
29 30 8.950210 ACGAATAGTTCATTCTGTGATTTGATT 58.050 29.630 0.00 0.00 40.89 2.57
30 31 8.393366 CACGAATAGTTCATTCTGTGATTTGAT 58.607 33.333 12.43 0.00 43.32 2.57
31 32 7.602265 TCACGAATAGTTCATTCTGTGATTTGA 59.398 33.333 14.64 0.00 43.76 2.69
32 33 7.742151 TCACGAATAGTTCATTCTGTGATTTG 58.258 34.615 14.64 0.00 43.76 2.32
33 34 7.905604 TCACGAATAGTTCATTCTGTGATTT 57.094 32.000 14.64 0.00 43.76 2.17
34 35 7.905604 TTCACGAATAGTTCATTCTGTGATT 57.094 32.000 17.15 0.00 45.52 2.57
35 36 7.604164 AGTTTCACGAATAGTTCATTCTGTGAT 59.396 33.333 17.15 7.47 45.52 3.06
36 37 6.929049 AGTTTCACGAATAGTTCATTCTGTGA 59.071 34.615 14.64 14.64 45.11 3.58
37 38 7.121974 AGTTTCACGAATAGTTCATTCTGTG 57.878 36.000 0.00 11.93 42.74 3.66
38 39 9.436957 AATAGTTTCACGAATAGTTCATTCTGT 57.563 29.630 0.00 0.00 40.89 3.41
55 56 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
56 57 1.730064 TCAGCCGCGTGAAATAGTTTC 59.270 47.619 4.92 0.00 40.08 2.78
57 58 1.463444 GTCAGCCGCGTGAAATAGTTT 59.537 47.619 4.92 0.00 0.00 2.66
58 59 1.076332 GTCAGCCGCGTGAAATAGTT 58.924 50.000 4.92 0.00 0.00 2.24
59 60 0.739813 GGTCAGCCGCGTGAAATAGT 60.740 55.000 4.92 0.00 0.00 2.12
60 61 0.460284 AGGTCAGCCGCGTGAAATAG 60.460 55.000 4.92 0.00 40.50 1.73
61 62 0.036765 AAGGTCAGCCGCGTGAAATA 60.037 50.000 4.92 0.00 40.50 1.40
62 63 0.889186 AAAGGTCAGCCGCGTGAAAT 60.889 50.000 4.92 0.00 40.50 2.17
63 64 1.098712 AAAAGGTCAGCCGCGTGAAA 61.099 50.000 4.92 0.00 40.50 2.69
64 65 1.098712 AAAAAGGTCAGCCGCGTGAA 61.099 50.000 4.92 0.00 40.50 3.18
65 66 1.525077 AAAAAGGTCAGCCGCGTGA 60.525 52.632 4.92 0.00 40.50 4.35
66 67 1.370414 CAAAAAGGTCAGCCGCGTG 60.370 57.895 4.92 0.00 40.50 5.34
67 68 1.822186 ACAAAAAGGTCAGCCGCGT 60.822 52.632 4.92 0.00 40.50 6.01
68 69 1.370414 CACAAAAAGGTCAGCCGCG 60.370 57.895 0.00 0.00 40.50 6.46
69 70 0.594796 CACACAAAAAGGTCAGCCGC 60.595 55.000 0.00 0.00 40.50 6.53
70 71 1.021202 TCACACAAAAAGGTCAGCCG 58.979 50.000 0.00 0.00 40.50 5.52
71 72 1.268539 CGTCACACAAAAAGGTCAGCC 60.269 52.381 0.00 0.00 0.00 4.85
72 73 1.859998 GCGTCACACAAAAAGGTCAGC 60.860 52.381 0.00 0.00 0.00 4.26
73 74 1.268539 GGCGTCACACAAAAAGGTCAG 60.269 52.381 0.00 0.00 0.00 3.51
74 75 0.736053 GGCGTCACACAAAAAGGTCA 59.264 50.000 0.00 0.00 0.00 4.02
75 76 0.030235 GGGCGTCACACAAAAAGGTC 59.970 55.000 0.00 0.00 0.00 3.85
76 77 1.720694 CGGGCGTCACACAAAAAGGT 61.721 55.000 0.00 0.00 0.00 3.50
77 78 1.008995 CGGGCGTCACACAAAAAGG 60.009 57.895 0.00 0.00 0.00 3.11
78 79 0.316689 GTCGGGCGTCACACAAAAAG 60.317 55.000 0.00 0.00 0.00 2.27
79 80 1.025113 TGTCGGGCGTCACACAAAAA 61.025 50.000 0.00 0.00 0.00 1.94
80 81 1.449778 TGTCGGGCGTCACACAAAA 60.450 52.632 0.00 0.00 0.00 2.44
81 82 2.174969 GTGTCGGGCGTCACACAAA 61.175 57.895 5.81 0.00 42.20 2.83
82 83 2.586635 GTGTCGGGCGTCACACAA 60.587 61.111 5.81 0.00 42.20 3.33
83 84 4.934942 CGTGTCGGGCGTCACACA 62.935 66.667 10.72 0.00 42.67 3.72
84 85 4.634133 TCGTGTCGGGCGTCACAC 62.634 66.667 0.75 0.75 39.70 3.82
85 86 3.834447 CTTCGTGTCGGGCGTCACA 62.834 63.158 0.00 0.00 34.69 3.58
86 87 3.103911 CTTCGTGTCGGGCGTCAC 61.104 66.667 0.00 0.00 0.00 3.67
87 88 4.351938 CCTTCGTGTCGGGCGTCA 62.352 66.667 0.00 0.00 0.00 4.35
95 96 2.758770 TAGTGTGGCGCCTTCGTGTC 62.759 60.000 29.70 10.72 38.14 3.67
96 97 2.863346 TAGTGTGGCGCCTTCGTGT 61.863 57.895 29.70 9.85 38.14 4.49
97 98 2.048597 TAGTGTGGCGCCTTCGTG 60.049 61.111 29.70 0.00 38.14 4.35
98 99 2.048503 GTAGTGTGGCGCCTTCGT 60.049 61.111 29.70 12.53 38.14 3.85
99 100 2.048597 TGTAGTGTGGCGCCTTCG 60.049 61.111 29.70 0.00 39.07 3.79
100 101 1.004918 AGTGTAGTGTGGCGCCTTC 60.005 57.895 29.70 20.58 0.00 3.46
101 102 1.301716 CAGTGTAGTGTGGCGCCTT 60.302 57.895 29.70 13.03 0.00 4.35
102 103 2.343758 CAGTGTAGTGTGGCGCCT 59.656 61.111 29.70 9.99 0.00 5.52
103 104 2.030562 ACAGTGTAGTGTGGCGCC 59.969 61.111 22.73 22.73 0.00 6.53
104 105 2.954753 GCACAGTGTAGTGTGGCGC 61.955 63.158 18.52 0.00 46.73 6.53
105 106 1.157257 TTGCACAGTGTAGTGTGGCG 61.157 55.000 18.52 0.00 46.73 5.69
106 107 0.307760 GTTGCACAGTGTAGTGTGGC 59.692 55.000 18.52 12.34 46.73 5.01
107 108 0.581529 CGTTGCACAGTGTAGTGTGG 59.418 55.000 18.52 1.81 46.73 4.17
109 110 1.136305 AGACGTTGCACAGTGTAGTGT 59.864 47.619 1.61 0.00 41.52 3.55
110 111 1.787155 GAGACGTTGCACAGTGTAGTG 59.213 52.381 1.61 0.00 42.37 2.74
111 112 1.407618 TGAGACGTTGCACAGTGTAGT 59.592 47.619 1.61 0.00 0.00 2.73
112 113 1.787155 GTGAGACGTTGCACAGTGTAG 59.213 52.381 14.46 0.00 35.19 2.74
113 114 1.135333 TGTGAGACGTTGCACAGTGTA 59.865 47.619 17.12 0.00 39.86 2.90
114 115 0.108377 TGTGAGACGTTGCACAGTGT 60.108 50.000 17.12 0.00 39.86 3.55
115 116 2.676744 TGTGAGACGTTGCACAGTG 58.323 52.632 17.12 0.00 39.86 3.66
118 119 2.556622 TCTATCTGTGAGACGTTGCACA 59.443 45.455 19.08 19.08 42.25 4.57
119 120 2.917971 GTCTATCTGTGAGACGTTGCAC 59.082 50.000 12.99 12.99 34.41 4.57
120 121 3.217599 GTCTATCTGTGAGACGTTGCA 57.782 47.619 0.00 0.00 34.41 4.08
126 127 3.544440 CGTGTAGCGTCTATCTGTGAGAC 60.544 52.174 0.00 0.00 40.02 3.36
127 128 2.608090 CGTGTAGCGTCTATCTGTGAGA 59.392 50.000 0.00 0.00 35.54 3.27
128 129 2.286477 CCGTGTAGCGTCTATCTGTGAG 60.286 54.545 0.00 0.00 39.32 3.51
129 130 1.669265 CCGTGTAGCGTCTATCTGTGA 59.331 52.381 0.00 0.00 39.32 3.58
130 131 1.860399 GCCGTGTAGCGTCTATCTGTG 60.860 57.143 0.00 0.00 39.32 3.66
131 132 0.381089 GCCGTGTAGCGTCTATCTGT 59.619 55.000 0.00 0.00 39.32 3.41
132 133 0.317938 GGCCGTGTAGCGTCTATCTG 60.318 60.000 0.00 0.00 39.32 2.90
133 134 0.750546 TGGCCGTGTAGCGTCTATCT 60.751 55.000 0.00 0.00 39.32 1.98
134 135 0.317938 CTGGCCGTGTAGCGTCTATC 60.318 60.000 0.00 0.00 39.32 2.08
135 136 1.734137 CTGGCCGTGTAGCGTCTAT 59.266 57.895 0.00 0.00 39.32 1.98
136 137 3.060020 GCTGGCCGTGTAGCGTCTA 62.060 63.158 0.00 0.00 39.32 2.59
137 138 4.436998 GCTGGCCGTGTAGCGTCT 62.437 66.667 0.00 0.00 39.32 4.18
154 155 3.179265 GATCACACGGGTGCGACG 61.179 66.667 14.50 0.00 44.87 5.12
155 156 2.048597 TGATCACACGGGTGCGAC 60.049 61.111 14.50 7.33 44.87 5.19
156 157 1.811645 TTCTGATCACACGGGTGCGA 61.812 55.000 14.50 3.83 44.87 5.10
157 158 0.948623 TTTCTGATCACACGGGTGCG 60.949 55.000 14.50 1.20 44.87 5.34
158 159 1.234821 TTTTCTGATCACACGGGTGC 58.765 50.000 14.50 0.00 44.87 5.01
159 160 4.695455 AGTAATTTTCTGATCACACGGGTG 59.305 41.667 12.84 12.84 46.66 4.61
160 161 4.906618 AGTAATTTTCTGATCACACGGGT 58.093 39.130 0.00 0.00 0.00 5.28
161 162 6.594159 ACTTAGTAATTTTCTGATCACACGGG 59.406 38.462 0.00 0.00 0.00 5.28
162 163 7.330946 TGACTTAGTAATTTTCTGATCACACGG 59.669 37.037 0.00 0.00 0.00 4.94
163 164 8.239681 TGACTTAGTAATTTTCTGATCACACG 57.760 34.615 0.00 0.00 0.00 4.49
164 165 9.209175 ACTGACTTAGTAATTTTCTGATCACAC 57.791 33.333 0.00 0.00 38.04 3.82
165 166 9.208022 CACTGACTTAGTAATTTTCTGATCACA 57.792 33.333 0.00 0.00 37.60 3.58
166 167 9.209175 ACACTGACTTAGTAATTTTCTGATCAC 57.791 33.333 0.00 0.00 37.60 3.06
170 171 9.692749 CTGTACACTGACTTAGTAATTTTCTGA 57.307 33.333 0.00 0.00 37.60 3.27
171 172 8.436200 GCTGTACACTGACTTAGTAATTTTCTG 58.564 37.037 0.00 0.00 37.60 3.02
172 173 7.328737 CGCTGTACACTGACTTAGTAATTTTCT 59.671 37.037 0.00 0.00 37.60 2.52
173 174 7.445836 CGCTGTACACTGACTTAGTAATTTTC 58.554 38.462 0.00 0.00 37.60 2.29
174 175 6.128634 GCGCTGTACACTGACTTAGTAATTTT 60.129 38.462 0.00 0.00 37.60 1.82
175 176 5.347907 GCGCTGTACACTGACTTAGTAATTT 59.652 40.000 0.00 0.00 37.60 1.82
176 177 4.863131 GCGCTGTACACTGACTTAGTAATT 59.137 41.667 0.00 0.00 37.60 1.40
177 178 4.421948 GCGCTGTACACTGACTTAGTAAT 58.578 43.478 0.00 0.00 37.60 1.89
178 179 3.366679 GGCGCTGTACACTGACTTAGTAA 60.367 47.826 7.64 0.00 37.60 2.24
179 180 2.163010 GGCGCTGTACACTGACTTAGTA 59.837 50.000 7.64 0.00 37.60 1.82
180 181 1.067776 GGCGCTGTACACTGACTTAGT 60.068 52.381 7.64 0.00 41.36 2.24
181 182 1.202582 AGGCGCTGTACACTGACTTAG 59.797 52.381 7.64 0.00 0.00 2.18
182 183 1.067846 CAGGCGCTGTACACTGACTTA 60.068 52.381 7.64 0.00 32.86 2.24
183 184 0.319900 CAGGCGCTGTACACTGACTT 60.320 55.000 7.64 0.00 32.86 3.01
184 185 1.179174 TCAGGCGCTGTACACTGACT 61.179 55.000 7.64 1.43 35.24 3.41
185 186 0.734253 CTCAGGCGCTGTACACTGAC 60.734 60.000 7.64 0.00 35.24 3.51
186 187 0.893727 TCTCAGGCGCTGTACACTGA 60.894 55.000 7.64 9.54 37.61 3.41
187 188 0.457509 CTCTCAGGCGCTGTACACTG 60.458 60.000 7.64 4.89 32.61 3.66
188 189 1.886585 CTCTCAGGCGCTGTACACT 59.113 57.895 7.64 0.00 32.61 3.55
189 190 1.807573 GCTCTCAGGCGCTGTACAC 60.808 63.158 7.64 0.00 32.61 2.90
190 191 0.679960 TAGCTCTCAGGCGCTGTACA 60.680 55.000 7.64 0.00 37.05 2.90
191 192 0.030101 CTAGCTCTCAGGCGCTGTAC 59.970 60.000 7.64 0.00 37.05 2.90
192 193 1.103987 CCTAGCTCTCAGGCGCTGTA 61.104 60.000 7.64 0.00 37.05 2.74
193 194 2.422231 CCTAGCTCTCAGGCGCTGT 61.422 63.158 7.64 0.00 37.05 4.40
194 195 2.416678 CCTAGCTCTCAGGCGCTG 59.583 66.667 7.64 3.67 37.05 5.18
207 208 4.514577 CTGACCCGTGGCGCCTAG 62.515 72.222 29.70 20.71 0.00 3.02
218 219 1.429148 CTATTTCACGCGGCTGACCC 61.429 60.000 12.47 0.00 0.00 4.46
219 220 0.739813 ACTATTTCACGCGGCTGACC 60.740 55.000 12.47 0.00 0.00 4.02
220 221 1.076332 AACTATTTCACGCGGCTGAC 58.924 50.000 12.47 0.00 0.00 3.51
221 222 1.803334 AAACTATTTCACGCGGCTGA 58.197 45.000 12.47 2.44 0.00 4.26
222 223 2.534150 CGTAAACTATTTCACGCGGCTG 60.534 50.000 12.47 0.00 0.00 4.85
223 224 1.657094 CGTAAACTATTTCACGCGGCT 59.343 47.619 12.47 0.00 0.00 5.52
224 225 1.267186 CCGTAAACTATTTCACGCGGC 60.267 52.381 12.47 0.00 33.19 6.53
225 226 2.028404 GTCCGTAAACTATTTCACGCGG 59.972 50.000 12.47 0.00 39.33 6.46
226 227 2.662637 TGTCCGTAAACTATTTCACGCG 59.337 45.455 3.53 3.53 33.19 6.01
227 228 3.676646 ACTGTCCGTAAACTATTTCACGC 59.323 43.478 0.00 0.00 33.19 5.34
228 229 5.403166 TGAACTGTCCGTAAACTATTTCACG 59.597 40.000 0.00 0.00 0.00 4.35
229 230 6.774354 TGAACTGTCCGTAAACTATTTCAC 57.226 37.500 0.00 0.00 0.00 3.18
230 231 7.876068 AGAATGAACTGTCCGTAAACTATTTCA 59.124 33.333 0.00 0.00 0.00 2.69
231 232 8.169268 CAGAATGAACTGTCCGTAAACTATTTC 58.831 37.037 0.00 0.00 39.69 2.17
232 233 7.660208 ACAGAATGAACTGTCCGTAAACTATTT 59.340 33.333 0.00 0.00 46.36 1.40
233 234 7.159372 ACAGAATGAACTGTCCGTAAACTATT 58.841 34.615 0.00 0.00 46.36 1.73
234 235 6.698380 ACAGAATGAACTGTCCGTAAACTAT 58.302 36.000 0.00 0.00 46.36 2.12
235 236 6.092955 ACAGAATGAACTGTCCGTAAACTA 57.907 37.500 0.00 0.00 46.36 2.24
236 237 4.957296 ACAGAATGAACTGTCCGTAAACT 58.043 39.130 0.00 0.00 46.36 2.66
246 247 7.080099 ACGAAATCAAATCACAGAATGAACTG 58.920 34.615 0.00 0.00 41.93 3.16
247 248 7.173907 AGACGAAATCAAATCACAGAATGAACT 59.826 33.333 0.00 0.00 41.93 3.01
248 249 7.301054 AGACGAAATCAAATCACAGAATGAAC 58.699 34.615 0.00 0.00 41.93 3.18
249 250 7.439157 AGACGAAATCAAATCACAGAATGAA 57.561 32.000 0.00 0.00 41.93 2.57
250 251 8.722480 ATAGACGAAATCAAATCACAGAATGA 57.278 30.769 0.00 0.00 43.13 2.57
252 253 9.265901 CCTATAGACGAAATCAAATCACAGAAT 57.734 33.333 0.00 0.00 0.00 2.40
253 254 8.258007 ACCTATAGACGAAATCAAATCACAGAA 58.742 33.333 0.00 0.00 0.00 3.02
254 255 7.782049 ACCTATAGACGAAATCAAATCACAGA 58.218 34.615 0.00 0.00 0.00 3.41
255 256 7.706607 TGACCTATAGACGAAATCAAATCACAG 59.293 37.037 0.00 0.00 0.00 3.66
256 257 7.552459 TGACCTATAGACGAAATCAAATCACA 58.448 34.615 0.00 0.00 0.00 3.58
257 258 8.420374 TTGACCTATAGACGAAATCAAATCAC 57.580 34.615 0.00 0.00 0.00 3.06
258 259 9.613428 ATTTGACCTATAGACGAAATCAAATCA 57.387 29.630 0.00 0.00 39.78 2.57
262 263 9.226606 ACAAATTTGACCTATAGACGAAATCAA 57.773 29.630 24.64 0.00 0.00 2.57
263 264 8.786826 ACAAATTTGACCTATAGACGAAATCA 57.213 30.769 24.64 0.00 0.00 2.57
264 265 8.879759 TGACAAATTTGACCTATAGACGAAATC 58.120 33.333 24.64 6.30 0.00 2.17
265 266 8.786826 TGACAAATTTGACCTATAGACGAAAT 57.213 30.769 24.64 0.00 0.00 2.17
266 267 8.610248 TTGACAAATTTGACCTATAGACGAAA 57.390 30.769 24.64 2.44 0.00 3.46
267 268 8.610248 TTTGACAAATTTGACCTATAGACGAA 57.390 30.769 24.64 3.11 0.00 3.85
268 269 8.786826 ATTTGACAAATTTGACCTATAGACGA 57.213 30.769 24.64 0.00 0.00 4.20
269 270 9.840427 AAATTTGACAAATTTGACCTATAGACG 57.160 29.630 29.31 0.00 46.30 4.18
281 282 7.240149 ACCGCATAGGCAAATTTGACAAATTT 61.240 34.615 26.12 26.12 45.83 1.82
282 283 4.630940 CCGCATAGGCAAATTTGACAAATT 59.369 37.500 25.59 18.41 42.62 1.82
283 284 4.183101 CCGCATAGGCAAATTTGACAAAT 58.817 39.130 25.59 15.27 39.18 2.32
284 285 3.006323 ACCGCATAGGCAAATTTGACAAA 59.994 39.130 25.59 13.64 46.52 2.83
285 286 2.560542 ACCGCATAGGCAAATTTGACAA 59.439 40.909 25.59 7.90 46.52 3.18
286 287 2.166829 ACCGCATAGGCAAATTTGACA 58.833 42.857 25.59 12.12 46.52 3.58
287 288 2.939460 ACCGCATAGGCAAATTTGAC 57.061 45.000 22.31 19.61 46.52 3.18
288 289 2.353269 CGTACCGCATAGGCAAATTTGA 59.647 45.455 22.31 1.15 46.52 2.69
289 290 2.715268 CGTACCGCATAGGCAAATTTG 58.285 47.619 14.03 14.03 46.52 2.32
313 314 2.914734 TATCTGGAGGGGTGGCTGGG 62.915 65.000 0.00 0.00 0.00 4.45
343 344 4.837421 GTAGGGGTGGGGGAGGGG 62.837 77.778 0.00 0.00 0.00 4.79
344 345 4.837421 GGTAGGGGTGGGGGAGGG 62.837 77.778 0.00 0.00 0.00 4.30
345 346 4.033251 TGGTAGGGGTGGGGGAGG 62.033 72.222 0.00 0.00 0.00 4.30
346 347 2.691252 GTGGTAGGGGTGGGGGAG 60.691 72.222 0.00 0.00 0.00 4.30
347 348 4.358181 GGTGGTAGGGGTGGGGGA 62.358 72.222 0.00 0.00 0.00 4.81
349 350 2.963399 TAGGGTGGTAGGGGTGGGG 61.963 68.421 0.00 0.00 0.00 4.96
350 351 1.691689 GTAGGGTGGTAGGGGTGGG 60.692 68.421 0.00 0.00 0.00 4.61
351 352 2.062177 CGTAGGGTGGTAGGGGTGG 61.062 68.421 0.00 0.00 0.00 4.61
352 353 2.728435 GCGTAGGGTGGTAGGGGTG 61.728 68.421 0.00 0.00 0.00 4.61
353 354 2.364710 GCGTAGGGTGGTAGGGGT 60.365 66.667 0.00 0.00 0.00 4.95
358 359 2.120909 GCGTAGGCGTAGGGTGGTA 61.121 63.158 8.09 0.00 40.81 3.25
459 472 2.047655 CCGGTGGTGTGCACGTAT 60.048 61.111 13.13 0.00 0.00 3.06
477 490 4.329545 GCTTGTCACGGGAGGGCA 62.330 66.667 0.00 0.00 0.00 5.36
601 615 0.872021 CGCAGGCGAACTATCCAGTC 60.872 60.000 8.15 0.00 42.83 3.51
621 638 0.608640 TTTCCCTCTCCGCTCTGTTC 59.391 55.000 0.00 0.00 0.00 3.18
674 691 2.208132 TTCTTCTCCTCGCTGTCTCT 57.792 50.000 0.00 0.00 0.00 3.10
675 692 2.601804 GTTTCTTCTCCTCGCTGTCTC 58.398 52.381 0.00 0.00 0.00 3.36
676 693 1.273886 GGTTTCTTCTCCTCGCTGTCT 59.726 52.381 0.00 0.00 0.00 3.41
682 699 1.734047 CGCTCTGGTTTCTTCTCCTCG 60.734 57.143 0.00 0.00 0.00 4.63
813 848 1.609501 CCTCGAGAGGGTTGTGGGA 60.610 63.158 15.71 0.00 44.87 4.37
814 849 2.982130 CCTCGAGAGGGTTGTGGG 59.018 66.667 15.71 0.00 44.87 4.61
854 894 7.395617 CCTTCTTCCCTTTAGTTTAGTTAGCT 58.604 38.462 0.00 0.00 0.00 3.32
855 895 6.093771 GCCTTCTTCCCTTTAGTTTAGTTAGC 59.906 42.308 0.00 0.00 0.00 3.09
856 896 7.166167 TGCCTTCTTCCCTTTAGTTTAGTTAG 58.834 38.462 0.00 0.00 0.00 2.34
984 1031 2.081161 CATCCCCTCCCCTTCCCTG 61.081 68.421 0.00 0.00 0.00 4.45
987 1034 2.079288 GTCCATCCCCTCCCCTTCC 61.079 68.421 0.00 0.00 0.00 3.46
989 1036 2.044620 GGTCCATCCCCTCCCCTT 59.955 66.667 0.00 0.00 0.00 3.95
990 1037 4.499116 CGGTCCATCCCCTCCCCT 62.499 72.222 0.00 0.00 0.00 4.79
1193 1243 9.463902 AAAACTAGTGATGCTCTAGTAGTAAGA 57.536 33.333 0.00 0.00 44.67 2.10
1202 1252 7.766278 GGAAGATGAAAAACTAGTGATGCTCTA 59.234 37.037 0.00 0.00 0.00 2.43
1211 1261 4.452455 CGTGCAGGAAGATGAAAAACTAGT 59.548 41.667 0.00 0.00 0.00 2.57
1218 1268 0.690192 TCCCGTGCAGGAAGATGAAA 59.310 50.000 8.24 0.00 45.00 2.69
1238 1288 0.036577 GCTCTTCAGCTCTGCTTCCA 60.037 55.000 0.00 0.00 43.09 3.53
1455 1505 0.765903 AGAGGATGATGGATGGGCGT 60.766 55.000 0.00 0.00 0.00 5.68
1479 1529 1.829533 CGATGGGGCATGGAAAGGG 60.830 63.158 0.00 0.00 0.00 3.95
1531 1581 1.089481 TAGTAGTCCACGTACGCGGG 61.089 60.000 21.44 19.54 43.45 6.13
1533 1583 1.002366 AGTAGTAGTCCACGTACGCG 58.998 55.000 16.72 3.53 44.93 6.01
1671 1721 6.665992 ACAGACTAACTAACTGTGGAATCA 57.334 37.500 0.00 0.00 42.18 2.57
1690 1740 7.921786 TTTTAGTAGTAGCTACCGTAACAGA 57.078 36.000 20.31 4.10 37.65 3.41
1840 2005 4.010349 AGCAGGTGGTATCTTGTTTTAGC 58.990 43.478 0.00 0.00 0.00 3.09
1855 2020 1.595109 TGCGACAGTGAAGCAGGTG 60.595 57.895 11.92 0.00 35.81 4.00
1856 2021 2.821685 TGCGACAGTGAAGCAGGT 59.178 55.556 11.92 0.00 35.81 4.00
1893 2060 5.749596 TGTAAACAGAGTGAACATGTTGG 57.250 39.130 17.58 0.94 37.24 3.77
1900 2067 4.829064 TTGGCATGTAAACAGAGTGAAC 57.171 40.909 0.00 0.00 0.00 3.18
1903 2070 4.925054 CCAATTTGGCATGTAAACAGAGTG 59.075 41.667 1.71 0.00 0.00 3.51
1944 2114 3.806949 AGGGCACAAAAACTAGGATGA 57.193 42.857 0.00 0.00 0.00 2.92
1961 2135 1.120530 AACAGGCCGATACACTAGGG 58.879 55.000 0.00 0.00 0.00 3.53
1974 2148 4.082571 ACAACAATGAGCAGAATAACAGGC 60.083 41.667 0.00 0.00 0.00 4.85
2003 2177 4.873827 ACCGACGACTGCAAATACAAATAT 59.126 37.500 0.00 0.00 0.00 1.28
2005 2179 3.071479 ACCGACGACTGCAAATACAAAT 58.929 40.909 0.00 0.00 0.00 2.32
2007 2181 2.157834 ACCGACGACTGCAAATACAA 57.842 45.000 0.00 0.00 0.00 2.41
2180 2355 7.850193 TGAAATTTCAGGGCTATAAGCATTTT 58.150 30.769 16.91 0.00 36.40 1.82
2185 2360 5.284864 GCTTGAAATTTCAGGGCTATAAGC 58.715 41.667 26.10 21.34 38.37 3.09
2252 2437 3.673746 TTTCGCACTGTGAGTTTTCAG 57.326 42.857 12.86 0.00 37.65 3.02
2262 2447 5.957842 TTTCAGGAATTATTTCGCACTGT 57.042 34.783 0.00 0.00 32.28 3.55
2263 2448 7.113965 GCATATTTCAGGAATTATTTCGCACTG 59.886 37.037 0.00 0.00 32.28 3.66
2264 2449 7.141363 GCATATTTCAGGAATTATTTCGCACT 58.859 34.615 0.00 0.00 32.28 4.40
2265 2450 6.086765 CGCATATTTCAGGAATTATTTCGCAC 59.913 38.462 0.00 0.00 32.28 5.34
2266 2451 6.142139 CGCATATTTCAGGAATTATTTCGCA 58.858 36.000 0.00 0.00 32.28 5.10
2267 2452 6.142817 ACGCATATTTCAGGAATTATTTCGC 58.857 36.000 11.26 0.00 32.28 4.70
2268 2453 9.825972 ATTACGCATATTTCAGGAATTATTTCG 57.174 29.630 10.48 10.48 32.28 3.46
2277 2462 9.554395 TCAGAAATTATTACGCATATTTCAGGA 57.446 29.630 0.00 0.00 32.31 3.86
2285 2470 7.585936 CGCACATTTCAGAAATTATTACGCATA 59.414 33.333 5.58 0.00 0.00 3.14
2307 2492 4.412207 GTCACCCAGATAAAATTTCGCAC 58.588 43.478 0.00 0.00 0.00 5.34
2345 2543 8.091449 TCAAGGCTTTTAGTTTCAGAAACAAAA 58.909 29.630 24.85 23.05 43.79 2.44
2346 2544 7.607250 TCAAGGCTTTTAGTTTCAGAAACAAA 58.393 30.769 24.85 18.95 43.79 2.83
2347 2545 7.164230 TCAAGGCTTTTAGTTTCAGAAACAA 57.836 32.000 24.85 15.05 43.79 2.83
2348 2546 6.767524 TCAAGGCTTTTAGTTTCAGAAACA 57.232 33.333 24.85 10.54 43.79 2.83
2434 2639 7.633553 GCAGAAAAAGGGGCATAAACATTAGAT 60.634 37.037 0.00 0.00 0.00 1.98
2436 2641 5.812127 GCAGAAAAAGGGGCATAAACATTAG 59.188 40.000 0.00 0.00 0.00 1.73
2444 2649 2.562298 CAAGTGCAGAAAAAGGGGCATA 59.438 45.455 0.00 0.00 38.68 3.14
2451 2656 2.204237 GTTGCCCAAGTGCAGAAAAAG 58.796 47.619 0.00 0.00 43.21 2.27
2459 2664 2.620242 CAAATATGGTTGCCCAAGTGC 58.380 47.619 0.00 0.00 46.04 4.40
2485 2690 5.163893 GCATCTCACAAATGGAAATGCTTTG 60.164 40.000 0.00 0.00 34.90 2.77
2486 2691 4.933400 GCATCTCACAAATGGAAATGCTTT 59.067 37.500 0.00 0.00 34.90 3.51
2517 2722 9.476928 AGTAGTACCATGGGACTCATTATATAC 57.523 37.037 33.56 21.76 32.92 1.47
2521 2726 7.670559 GTCTAGTAGTACCATGGGACTCATTAT 59.329 40.741 33.56 17.04 32.92 1.28
2522 2727 7.002879 GTCTAGTAGTACCATGGGACTCATTA 58.997 42.308 33.56 20.73 32.92 1.90
2523 2728 5.834204 GTCTAGTAGTACCATGGGACTCATT 59.166 44.000 33.56 20.72 32.92 2.57
2524 2729 5.134679 AGTCTAGTAGTACCATGGGACTCAT 59.865 44.000 33.56 23.64 36.31 2.90
2525 2730 4.477581 AGTCTAGTAGTACCATGGGACTCA 59.522 45.833 33.56 17.98 0.00 3.41
2526 2731 5.051409 AGTCTAGTAGTACCATGGGACTC 57.949 47.826 33.56 22.81 0.00 3.36
2527 2732 4.727841 AGAGTCTAGTAGTACCATGGGACT 59.272 45.833 32.25 32.25 35.83 3.85
2528 2733 4.822896 CAGAGTCTAGTAGTACCATGGGAC 59.177 50.000 20.50 20.50 0.00 4.46
2588 2798 5.496387 CAATCTTCATTTCATCGAGGAACG 58.504 41.667 12.77 7.04 44.09 3.95
2691 2901 8.367911 GGAACCTGAATTGTCTTCCTAAAATTT 58.632 33.333 0.00 0.00 0.00 1.82
2729 2941 6.604795 ACAGGGATGGTCAAGAAATTAAGATG 59.395 38.462 0.00 0.00 0.00 2.90
2750 2962 4.566545 TTGTGTGCAGAACAATAACAGG 57.433 40.909 10.16 0.00 41.57 4.00
2756 2968 4.916983 TTAGCTTTGTGTGCAGAACAAT 57.083 36.364 14.00 4.47 41.57 2.71
2905 3117 3.512680 AGCGACTCGAAAATCTTGGTAG 58.487 45.455 1.63 0.00 0.00 3.18
2924 3136 9.956720 AAAAAGAATCTGTATGCAACATATAGC 57.043 29.630 6.50 0.00 37.50 2.97
2995 3216 3.467803 CCACGGATGGTTTCTTATCTCC 58.532 50.000 0.00 0.00 41.64 3.71
3043 3264 1.004560 CATGGTGCTGTCGTCCACT 60.005 57.895 0.00 0.00 33.91 4.00
3170 3391 1.364901 GGTCCAGACCGTCGTTCAA 59.635 57.895 0.05 0.00 42.29 2.69
3184 3405 0.736325 CCATGTCGTCGTCAAGGTCC 60.736 60.000 5.71 0.00 0.00 4.46
3270 3491 3.118261 TCTGAGTTGAGAGGTTTTGCACT 60.118 43.478 0.00 0.00 0.00 4.40
3415 3697 3.054875 AGAGATAGCCAACACAGCATTGA 60.055 43.478 0.00 0.00 0.00 2.57
3429 3711 5.234757 CAGTTCTCAAATCAGCAGAGATAGC 59.765 44.000 0.00 0.00 38.14 2.97
3613 3942 1.467342 GAACCCTGCACGTAAATGGAC 59.533 52.381 0.00 0.00 0.00 4.02
3644 3984 9.702494 CAATAATATGAGTCTGCTATCTGAACA 57.298 33.333 0.00 0.00 0.00 3.18
3654 3994 8.965172 CAAAATTGCTCAATAATATGAGTCTGC 58.035 33.333 6.22 0.00 46.85 4.26
3695 4037 4.378149 CCACGATATGCTGAAATCTGATGC 60.378 45.833 0.00 0.00 0.00 3.91
3696 4038 4.153655 CCCACGATATGCTGAAATCTGATG 59.846 45.833 0.00 0.00 0.00 3.07
3727 4069 5.419155 TCACTCCTGAACTACTCAATAGGTG 59.581 44.000 0.00 0.00 34.89 4.00
3784 4126 0.899019 GACTTGGGTGGGAGAGAGAC 59.101 60.000 0.00 0.00 0.00 3.36
3793 4141 1.375523 GTGCCTACGACTTGGGTGG 60.376 63.158 0.00 0.00 0.00 4.61
3795 4143 1.370064 GTGTGCCTACGACTTGGGT 59.630 57.895 0.00 0.00 0.00 4.51
3804 4152 3.551890 CGTTATCAGTCATGTGTGCCTAC 59.448 47.826 0.00 0.00 0.00 3.18
3805 4153 3.445805 TCGTTATCAGTCATGTGTGCCTA 59.554 43.478 0.00 0.00 0.00 3.93
3839 4218 4.517703 CGAGAGCGACGTCGTCCC 62.518 72.222 35.48 24.33 42.22 4.46
3874 4253 7.284489 TGTTAATCTGGCTTGTCTTACTTGTTT 59.716 33.333 0.00 0.00 0.00 2.83
3875 4254 6.770785 TGTTAATCTGGCTTGTCTTACTTGTT 59.229 34.615 0.00 0.00 0.00 2.83
3876 4255 6.296026 TGTTAATCTGGCTTGTCTTACTTGT 58.704 36.000 0.00 0.00 0.00 3.16
3884 4295 6.811665 GGGTTATTTTGTTAATCTGGCTTGTC 59.188 38.462 0.00 0.00 0.00 3.18
3889 4300 6.524101 TCTGGGTTATTTTGTTAATCTGGC 57.476 37.500 0.00 0.00 0.00 4.85
3907 4318 6.494491 TGCATAATTTGGGAGATTATTCTGGG 59.506 38.462 0.00 0.00 29.54 4.45
3913 4324 7.163441 GGCATTTGCATAATTTGGGAGATTAT 58.837 34.615 4.74 0.00 44.36 1.28
3914 4325 6.099413 TGGCATTTGCATAATTTGGGAGATTA 59.901 34.615 4.74 0.00 44.36 1.75
3921 4332 7.156000 TGATCTATGGCATTTGCATAATTTGG 58.844 34.615 4.78 0.00 44.36 3.28
3935 4346 5.366477 TCTTGGTGAAGTATGATCTATGGCA 59.634 40.000 0.00 0.00 0.00 4.92
3936 4347 5.858381 TCTTGGTGAAGTATGATCTATGGC 58.142 41.667 0.00 0.00 0.00 4.40
3953 4369 1.551883 GATGGCCAAATGCTTCTTGGT 59.448 47.619 10.96 0.00 44.46 3.67
3955 4371 2.494471 TGAGATGGCCAAATGCTTCTTG 59.506 45.455 10.96 0.00 40.92 3.02
3972 4388 7.561356 TCAGTTGAATGATACTCCTACATGAGA 59.439 37.037 0.00 0.00 36.22 3.27
3974 4390 7.660030 TCAGTTGAATGATACTCCTACATGA 57.340 36.000 0.00 0.00 0.00 3.07
3975 4391 8.722480 TTTCAGTTGAATGATACTCCTACATG 57.278 34.615 0.00 0.00 33.54 3.21
3976 4392 7.497249 GCTTTCAGTTGAATGATACTCCTACAT 59.503 37.037 10.80 0.00 33.54 2.29
3977 4393 6.818644 GCTTTCAGTTGAATGATACTCCTACA 59.181 38.462 10.80 0.00 33.54 2.74
3979 4395 6.818644 GTGCTTTCAGTTGAATGATACTCCTA 59.181 38.462 10.80 0.00 33.54 2.94
3990 4534 4.219507 TGGAGTTTTGTGCTTTCAGTTGAA 59.780 37.500 0.00 0.00 0.00 2.69
3991 4535 3.761218 TGGAGTTTTGTGCTTTCAGTTGA 59.239 39.130 0.00 0.00 0.00 3.18
4015 4560 2.427095 GTGACAATAATCCAGGGTTGCC 59.573 50.000 0.00 0.00 0.00 4.52
4037 4582 5.097742 TGTATGGAGGTTATGGTGAGTTG 57.902 43.478 0.00 0.00 0.00 3.16
4047 4592 4.199310 GCTTGCTTGATGTATGGAGGTTA 58.801 43.478 0.00 0.00 0.00 2.85
4071 4616 6.843779 GGTGCATGTTTTTGTTTTCGAATAAC 59.156 34.615 0.00 7.41 0.00 1.89
4092 4638 1.202290 CCTGTGCAATAAATCCGGTGC 60.202 52.381 0.00 2.90 37.51 5.01
4129 4675 4.062293 TCACATGTAAGTGAAGGGTTTCG 58.938 43.478 0.00 0.00 44.92 3.46
4140 4687 4.100963 TGACCTCAACTGTCACATGTAAGT 59.899 41.667 0.00 0.00 37.80 2.24
4141 4688 4.631131 TGACCTCAACTGTCACATGTAAG 58.369 43.478 0.00 0.00 37.80 2.34
4142 4689 4.681074 TGACCTCAACTGTCACATGTAA 57.319 40.909 0.00 0.00 37.80 2.41
4199 4747 2.554032 GTGTTCAATCCCTTGGTGTCTG 59.446 50.000 0.00 0.00 32.95 3.51
4224 4772 2.171725 GGTGGTGCTATTCGTCGGC 61.172 63.158 0.00 0.00 0.00 5.54
4242 4790 0.612174 TCCGAGAAGACCTCACAGGG 60.612 60.000 0.00 0.00 40.58 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.