Multiple sequence alignment - TraesCS4D01G077000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G077000 chr4D 100.000 2681 0 0 1 2681 51297621 51294941 0.000000e+00 4951
1 TraesCS4D01G077000 chr4D 91.851 589 46 2 2094 2681 501038394 501037807 0.000000e+00 821
2 TraesCS4D01G077000 chr4D 90.526 95 7 2 1255 1348 390273822 390273915 1.010000e-24 124
3 TraesCS4D01G077000 chr4B 90.975 1795 89 29 140 1904 75532280 75530529 0.000000e+00 2350
4 TraesCS4D01G077000 chr4B 87.417 151 11 7 12 156 75532689 75532541 1.650000e-37 167
5 TraesCS4D01G077000 chr4B 90.526 95 7 2 1255 1348 480059726 480059819 1.010000e-24 124
6 TraesCS4D01G077000 chr4B 92.771 83 4 2 1986 2066 612401511 612401593 4.690000e-23 119
7 TraesCS4D01G077000 chr4A 94.429 1436 57 12 533 1948 545214725 545216157 0.000000e+00 2187
8 TraesCS4D01G077000 chr4A 90.802 424 30 7 1 420 545213882 545214300 2.330000e-155 558
9 TraesCS4D01G077000 chr4A 91.667 120 10 0 1312 1431 112766215 112766334 1.650000e-37 167
10 TraesCS4D01G077000 chr4A 90.526 95 7 2 1255 1348 72026710 72026803 1.010000e-24 124
11 TraesCS4D01G077000 chr4A 94.805 77 4 0 1985 2061 236541809 236541733 1.300000e-23 121
12 TraesCS4D01G077000 chr4A 97.143 70 2 0 443 512 545214294 545214363 4.690000e-23 119
13 TraesCS4D01G077000 chr6B 92.243 593 45 1 2089 2681 57715887 57716478 0.000000e+00 839
14 TraesCS4D01G077000 chr7A 92.347 588 45 0 2094 2681 13340851 13341438 0.000000e+00 837
15 TraesCS4D01G077000 chr7A 92.347 588 45 0 2094 2681 682327954 682327367 0.000000e+00 837
16 TraesCS4D01G077000 chr2D 92.230 592 44 2 2090 2681 585207592 585208181 0.000000e+00 837
17 TraesCS4D01G077000 chr2D 96.000 75 3 0 1985 2059 120560097 120560023 3.620000e-24 122
18 TraesCS4D01G077000 chr7B 92.047 591 45 2 2092 2681 634288583 634287994 0.000000e+00 830
19 TraesCS4D01G077000 chr7B 90.526 95 7 2 1255 1348 375392685 375392778 1.010000e-24 124
20 TraesCS4D01G077000 chr6D 92.034 590 44 2 2094 2681 30534560 30533972 0.000000e+00 826
21 TraesCS4D01G077000 chr5A 91.837 588 48 0 2094 2681 685990908 685991495 0.000000e+00 821
22 TraesCS4D01G077000 chr1D 90.954 608 52 3 2074 2681 191378172 191378776 0.000000e+00 815
23 TraesCS4D01G077000 chr1D 90.526 95 7 2 1255 1348 212526689 212526782 1.010000e-24 124
24 TraesCS4D01G077000 chr1D 90.526 95 7 2 1255 1348 239620971 239620878 1.010000e-24 124
25 TraesCS4D01G077000 chr5D 92.593 108 7 1 1247 1353 88520296 88520403 1.290000e-33 154
26 TraesCS4D01G077000 chr5D 94.872 78 3 1 1986 2062 418873986 418874063 1.300000e-23 121
27 TraesCS4D01G077000 chr5B 96.000 75 3 0 1986 2060 605314125 605314199 3.620000e-24 122
28 TraesCS4D01G077000 chr2B 95.946 74 3 0 1986 2059 754965174 754965247 1.300000e-23 121
29 TraesCS4D01G077000 chr6A 94.667 75 4 0 1985 2059 235083784 235083858 1.690000e-22 117
30 TraesCS4D01G077000 chr3D 93.506 77 5 0 1983 2059 120008616 120008692 6.070000e-22 115
31 TraesCS4D01G077000 chr1B 92.500 80 5 1 1984 2062 26843412 26843333 2.180000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G077000 chr4D 51294941 51297621 2680 True 4951.000000 4951 100.000000 1 2681 1 chr4D.!!$R1 2680
1 TraesCS4D01G077000 chr4D 501037807 501038394 587 True 821.000000 821 91.851000 2094 2681 1 chr4D.!!$R2 587
2 TraesCS4D01G077000 chr4B 75530529 75532689 2160 True 1258.500000 2350 89.196000 12 1904 2 chr4B.!!$R1 1892
3 TraesCS4D01G077000 chr4A 545213882 545216157 2275 False 954.666667 2187 94.124667 1 1948 3 chr4A.!!$F3 1947
4 TraesCS4D01G077000 chr6B 57715887 57716478 591 False 839.000000 839 92.243000 2089 2681 1 chr6B.!!$F1 592
5 TraesCS4D01G077000 chr7A 13340851 13341438 587 False 837.000000 837 92.347000 2094 2681 1 chr7A.!!$F1 587
6 TraesCS4D01G077000 chr7A 682327367 682327954 587 True 837.000000 837 92.347000 2094 2681 1 chr7A.!!$R1 587
7 TraesCS4D01G077000 chr2D 585207592 585208181 589 False 837.000000 837 92.230000 2090 2681 1 chr2D.!!$F1 591
8 TraesCS4D01G077000 chr7B 634287994 634288583 589 True 830.000000 830 92.047000 2092 2681 1 chr7B.!!$R1 589
9 TraesCS4D01G077000 chr6D 30533972 30534560 588 True 826.000000 826 92.034000 2094 2681 1 chr6D.!!$R1 587
10 TraesCS4D01G077000 chr5A 685990908 685991495 587 False 821.000000 821 91.837000 2094 2681 1 chr5A.!!$F1 587
11 TraesCS4D01G077000 chr1D 191378172 191378776 604 False 815.000000 815 90.954000 2074 2681 1 chr1D.!!$F1 607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
462 760 0.108992 CCAAGCGCATGCATGAAAGT 60.109 50.0 30.64 9.12 42.25 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2092 2759 0.031721 GTGGTGGATATCGACGTCCC 59.968 60.0 10.58 5.36 33.45 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 9.360093 ACTGAAGAAATCTATAAAAGAGTGTCG 57.640 33.333 0.00 0.00 37.74 4.35
53 54 5.831702 ATCTATAAAAGAGTGTCGACGGT 57.168 39.130 11.62 0.00 37.74 4.83
58 59 2.412421 AAGAGTGTCGACGGTTACAC 57.588 50.000 11.62 15.78 45.06 2.90
109 110 6.400940 GCAATCAAATCACCGTGGTTTAATTG 60.401 38.462 21.72 21.72 38.50 2.32
150 432 2.034066 CGGGGTGCCATCAGTTGT 59.966 61.111 0.00 0.00 0.00 3.32
213 495 1.935933 CGTTGGAAGAGATTACCCCG 58.064 55.000 0.00 0.00 0.00 5.73
214 498 1.472728 CGTTGGAAGAGATTACCCCGG 60.473 57.143 0.00 0.00 0.00 5.73
250 534 0.837940 AATCTCGAGGCCTAAACCCC 59.162 55.000 13.56 0.00 0.00 4.95
330 617 1.226746 CCGTGAAGTCCAGAACAACC 58.773 55.000 0.00 0.00 0.00 3.77
334 621 2.872858 GTGAAGTCCAGAACAACCAGAC 59.127 50.000 0.00 0.00 0.00 3.51
335 622 2.135933 GAAGTCCAGAACAACCAGACG 58.864 52.381 0.00 0.00 32.70 4.18
336 623 1.120530 AGTCCAGAACAACCAGACGT 58.879 50.000 0.00 0.00 32.70 4.34
351 638 8.259049 CAACCAGACGTTGTAAATCCTTTATA 57.741 34.615 0.00 0.00 45.79 0.98
352 639 8.889717 CAACCAGACGTTGTAAATCCTTTATAT 58.110 33.333 0.00 0.00 45.79 0.86
353 640 8.658499 ACCAGACGTTGTAAATCCTTTATATC 57.342 34.615 0.00 0.00 0.00 1.63
354 641 8.262227 ACCAGACGTTGTAAATCCTTTATATCA 58.738 33.333 0.00 0.00 0.00 2.15
355 642 9.273016 CCAGACGTTGTAAATCCTTTATATCAT 57.727 33.333 0.00 0.00 0.00 2.45
359 646 9.607988 ACGTTGTAAATCCTTTATATCATCACA 57.392 29.630 0.00 0.00 0.00 3.58
385 678 1.077501 AAGATCACCCCATGCACCG 60.078 57.895 0.00 0.00 0.00 4.94
441 734 1.566018 CCTTGACGCCGAAACTCCAC 61.566 60.000 0.00 0.00 0.00 4.02
442 735 0.878523 CTTGACGCCGAAACTCCACA 60.879 55.000 0.00 0.00 0.00 4.17
444 737 2.280592 ACGCCGAAACTCCACACC 60.281 61.111 0.00 0.00 0.00 4.16
445 738 2.280524 CGCCGAAACTCCACACCA 60.281 61.111 0.00 0.00 0.00 4.17
451 744 1.444119 GAAACTCCACACCAAGCGCA 61.444 55.000 11.47 0.00 0.00 6.09
462 760 0.108992 CCAAGCGCATGCATGAAAGT 60.109 50.000 30.64 9.12 42.25 2.66
551 1194 3.499048 CACAAAGACACTACGAGCGTAT 58.501 45.455 2.97 0.00 0.00 3.06
700 1349 1.685765 ACTGCCACGGCTCCAGATA 60.686 57.895 9.92 0.00 42.51 1.98
892 1545 1.226686 GCCAGAGACACACAGCACAG 61.227 60.000 0.00 0.00 0.00 3.66
983 1636 2.370849 AGGAAGACCCAAGAAACGCTAA 59.629 45.455 0.00 0.00 37.41 3.09
984 1637 2.742589 GGAAGACCCAAGAAACGCTAAG 59.257 50.000 0.00 0.00 34.14 2.18
985 1638 1.809684 AGACCCAAGAAACGCTAAGC 58.190 50.000 0.00 0.00 0.00 3.09
986 1639 1.348036 AGACCCAAGAAACGCTAAGCT 59.652 47.619 0.00 0.00 0.00 3.74
1029 1683 0.394352 GGGACATGGAGCAAACGGAT 60.394 55.000 0.00 0.00 0.00 4.18
1116 1770 2.360726 TGGCTCGACCTCACGCTA 60.361 61.111 5.77 0.00 40.22 4.26
1672 2332 6.118852 ACTAAGAAGATGGATTTGAGCCTTC 58.881 40.000 0.00 0.00 0.00 3.46
1766 2426 9.784531 TTCTGTTAATTAATTTGATTTGGCCAA 57.215 25.926 16.05 16.05 0.00 4.52
1767 2427 9.434420 TCTGTTAATTAATTTGATTTGGCCAAG 57.566 29.630 19.48 0.00 0.00 3.61
1768 2428 9.218440 CTGTTAATTAATTTGATTTGGCCAAGT 57.782 29.630 19.48 16.87 0.00 3.16
1904 2568 4.050553 CACCGAAAACCAGTAGTCGTTTA 58.949 43.478 0.00 0.00 32.05 2.01
1929 2596 7.639113 AAAAATGTTATTCTTCTGCCGGATA 57.361 32.000 5.05 0.00 0.00 2.59
1948 2615 4.809426 GGATACGAAAACATGTACTCCCTG 59.191 45.833 0.00 0.00 0.00 4.45
1949 2616 3.764237 ACGAAAACATGTACTCCCTGT 57.236 42.857 0.00 0.00 0.00 4.00
1950 2617 4.877378 ACGAAAACATGTACTCCCTGTA 57.123 40.909 0.00 0.00 0.00 2.74
1951 2618 5.416271 ACGAAAACATGTACTCCCTGTAT 57.584 39.130 0.00 0.00 33.23 2.29
1952 2619 6.534475 ACGAAAACATGTACTCCCTGTATA 57.466 37.500 0.00 0.00 33.23 1.47
1953 2620 6.570692 ACGAAAACATGTACTCCCTGTATAG 58.429 40.000 0.00 0.00 33.23 1.31
1954 2621 6.154021 ACGAAAACATGTACTCCCTGTATAGT 59.846 38.462 0.00 0.00 33.23 2.12
1955 2622 6.475727 CGAAAACATGTACTCCCTGTATAGTG 59.524 42.308 0.00 0.00 33.23 2.74
1956 2623 7.490657 AAAACATGTACTCCCTGTATAGTGA 57.509 36.000 0.00 0.00 33.23 3.41
1957 2624 6.466885 AACATGTACTCCCTGTATAGTGAC 57.533 41.667 0.00 0.00 33.23 3.67
1958 2625 5.516044 ACATGTACTCCCTGTATAGTGACA 58.484 41.667 0.00 0.00 33.23 3.58
1959 2626 6.136857 ACATGTACTCCCTGTATAGTGACAT 58.863 40.000 0.00 0.00 33.23 3.06
1960 2627 7.295340 ACATGTACTCCCTGTATAGTGACATA 58.705 38.462 0.00 0.00 33.23 2.29
1961 2628 7.783119 ACATGTACTCCCTGTATAGTGACATAA 59.217 37.037 0.00 0.00 33.23 1.90
1962 2629 8.638873 CATGTACTCCCTGTATAGTGACATAAA 58.361 37.037 0.00 0.00 33.23 1.40
1963 2630 8.598202 TGTACTCCCTGTATAGTGACATAAAA 57.402 34.615 0.00 0.00 33.23 1.52
1964 2631 9.038072 TGTACTCCCTGTATAGTGACATAAAAA 57.962 33.333 0.00 0.00 33.23 1.94
1965 2632 9.530633 GTACTCCCTGTATAGTGACATAAAAAG 57.469 37.037 0.00 0.00 33.23 2.27
1966 2633 8.147244 ACTCCCTGTATAGTGACATAAAAAGT 57.853 34.615 0.00 0.00 0.00 2.66
1967 2634 8.258708 ACTCCCTGTATAGTGACATAAAAAGTC 58.741 37.037 0.00 0.00 36.55 3.01
1968 2635 8.375493 TCCCTGTATAGTGACATAAAAAGTCT 57.625 34.615 0.00 0.00 36.94 3.24
1969 2636 8.822805 TCCCTGTATAGTGACATAAAAAGTCTT 58.177 33.333 0.00 0.00 36.94 3.01
1991 2658 9.416794 GTCTTACAAAAGTTTACTACTACTCCC 57.583 37.037 0.00 0.00 35.54 4.30
1992 2659 9.372189 TCTTACAAAAGTTTACTACTACTCCCT 57.628 33.333 0.00 0.00 35.54 4.20
1993 2660 9.636879 CTTACAAAAGTTTACTACTACTCCCTC 57.363 37.037 0.00 0.00 35.54 4.30
1994 2661 7.002250 ACAAAAGTTTACTACTACTCCCTCC 57.998 40.000 0.00 0.00 35.54 4.30
1995 2662 6.556116 ACAAAAGTTTACTACTACTCCCTCCA 59.444 38.462 0.00 0.00 35.54 3.86
1996 2663 7.237055 ACAAAAGTTTACTACTACTCCCTCCAT 59.763 37.037 0.00 0.00 35.54 3.41
1997 2664 7.809880 AAAGTTTACTACTACTCCCTCCATT 57.190 36.000 0.00 0.00 35.54 3.16
1998 2665 7.421087 AAGTTTACTACTACTCCCTCCATTC 57.579 40.000 0.00 0.00 35.54 2.67
1999 2666 5.898397 AGTTTACTACTACTCCCTCCATTCC 59.102 44.000 0.00 0.00 34.56 3.01
2000 2667 5.476950 TTACTACTACTCCCTCCATTCCA 57.523 43.478 0.00 0.00 0.00 3.53
2001 2668 4.348020 ACTACTACTCCCTCCATTCCAA 57.652 45.455 0.00 0.00 0.00 3.53
2002 2669 4.695606 ACTACTACTCCCTCCATTCCAAA 58.304 43.478 0.00 0.00 0.00 3.28
2003 2670 5.098663 ACTACTACTCCCTCCATTCCAAAA 58.901 41.667 0.00 0.00 0.00 2.44
2004 2671 5.731678 ACTACTACTCCCTCCATTCCAAAAT 59.268 40.000 0.00 0.00 0.00 1.82
2005 2672 6.906901 ACTACTACTCCCTCCATTCCAAAATA 59.093 38.462 0.00 0.00 0.00 1.40
2006 2673 6.652205 ACTACTCCCTCCATTCCAAAATAA 57.348 37.500 0.00 0.00 0.00 1.40
2007 2674 7.039722 ACTACTCCCTCCATTCCAAAATAAA 57.960 36.000 0.00 0.00 0.00 1.40
2008 2675 7.652554 ACTACTCCCTCCATTCCAAAATAAAT 58.347 34.615 0.00 0.00 0.00 1.40
2009 2676 6.796785 ACTCCCTCCATTCCAAAATAAATG 57.203 37.500 0.00 0.00 33.57 2.32
2010 2677 6.502138 ACTCCCTCCATTCCAAAATAAATGA 58.498 36.000 0.00 0.00 35.35 2.57
2011 2678 6.381133 ACTCCCTCCATTCCAAAATAAATGAC 59.619 38.462 0.00 0.00 35.35 3.06
2012 2679 5.660864 TCCCTCCATTCCAAAATAAATGACC 59.339 40.000 0.00 0.00 35.35 4.02
2013 2680 5.163311 CCCTCCATTCCAAAATAAATGACCC 60.163 44.000 0.00 0.00 35.35 4.46
2014 2681 5.424895 CCTCCATTCCAAAATAAATGACCCA 59.575 40.000 0.00 0.00 35.35 4.51
2015 2682 6.070309 CCTCCATTCCAAAATAAATGACCCAA 60.070 38.462 0.00 0.00 35.35 4.12
2016 2683 6.706295 TCCATTCCAAAATAAATGACCCAAC 58.294 36.000 0.00 0.00 35.35 3.77
2017 2684 6.500049 TCCATTCCAAAATAAATGACCCAACT 59.500 34.615 0.00 0.00 35.35 3.16
2018 2685 7.017056 TCCATTCCAAAATAAATGACCCAACTT 59.983 33.333 0.00 0.00 35.35 2.66
2019 2686 8.317679 CCATTCCAAAATAAATGACCCAACTTA 58.682 33.333 0.00 0.00 35.35 2.24
2020 2687 9.369904 CATTCCAAAATAAATGACCCAACTTAG 57.630 33.333 0.00 0.00 35.35 2.18
2021 2688 8.485578 TTCCAAAATAAATGACCCAACTTAGT 57.514 30.769 0.00 0.00 0.00 2.24
2022 2689 9.589461 TTCCAAAATAAATGACCCAACTTAGTA 57.411 29.630 0.00 0.00 0.00 1.82
2023 2690 9.016438 TCCAAAATAAATGACCCAACTTAGTAC 57.984 33.333 0.00 0.00 0.00 2.73
2024 2691 8.798402 CCAAAATAAATGACCCAACTTAGTACA 58.202 33.333 0.00 0.00 0.00 2.90
2028 2695 9.582648 AATAAATGACCCAACTTAGTACAAAGT 57.417 29.630 0.00 0.00 41.46 2.66
2038 2705 6.435292 ACTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 36.26 2.90
2039 2706 7.549147 ACTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 36.26 1.98
2040 2707 8.147244 ACTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 36.26 1.98
2041 2708 8.603304 ACTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 36.26 1.73
2042 2709 9.449719 CTTAGTACAAAGTTGGGTCATCTATTT 57.550 33.333 0.00 0.00 0.00 1.40
2043 2710 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2044 2711 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
2045 2712 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
2046 2713 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
2047 2714 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
2048 2715 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2049 2716 5.016831 AGTTGGGTCATCTATTTTGGAACC 58.983 41.667 0.00 0.00 37.64 3.62
2050 2717 3.616219 TGGGTCATCTATTTTGGAACCG 58.384 45.455 0.00 0.00 40.06 4.44
2051 2718 3.264706 TGGGTCATCTATTTTGGAACCGA 59.735 43.478 0.00 0.00 40.06 4.69
2052 2719 3.877508 GGGTCATCTATTTTGGAACCGAG 59.122 47.826 0.00 0.00 0.00 4.63
2053 2720 3.877508 GGTCATCTATTTTGGAACCGAGG 59.122 47.826 0.00 0.00 0.00 4.63
2054 2721 3.877508 GTCATCTATTTTGGAACCGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2055 2722 3.778075 TCATCTATTTTGGAACCGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2056 2723 3.906720 TCTATTTTGGAACCGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2057 2724 3.178865 TCTATTTTGGAACCGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2058 2725 4.355549 TCTATTTTGGAACCGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2059 2726 3.629142 ATTTTGGAACCGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
2060 2727 2.019807 TTTGGAACCGAGGGAGTAGT 57.980 50.000 0.00 0.00 0.00 2.73
2061 2728 2.905415 TTGGAACCGAGGGAGTAGTA 57.095 50.000 0.00 0.00 0.00 1.82
2062 2729 2.431954 TGGAACCGAGGGAGTAGTAG 57.568 55.000 0.00 0.00 0.00 2.57
2063 2730 1.637553 TGGAACCGAGGGAGTAGTAGT 59.362 52.381 0.00 0.00 0.00 2.73
2064 2731 2.042162 TGGAACCGAGGGAGTAGTAGTT 59.958 50.000 0.00 0.00 0.00 2.24
2065 2732 3.266772 TGGAACCGAGGGAGTAGTAGTTA 59.733 47.826 0.00 0.00 0.00 2.24
2066 2733 3.882288 GGAACCGAGGGAGTAGTAGTTAG 59.118 52.174 0.00 0.00 0.00 2.34
2067 2734 4.522114 GAACCGAGGGAGTAGTAGTTAGT 58.478 47.826 0.00 0.00 0.00 2.24
2068 2735 5.396884 GGAACCGAGGGAGTAGTAGTTAGTA 60.397 48.000 0.00 0.00 0.00 1.82
2069 2736 5.700402 ACCGAGGGAGTAGTAGTTAGTAA 57.300 43.478 0.00 0.00 0.00 2.24
2070 2737 6.259346 ACCGAGGGAGTAGTAGTTAGTAAT 57.741 41.667 0.00 0.00 0.00 1.89
2071 2738 6.060788 ACCGAGGGAGTAGTAGTTAGTAATG 58.939 44.000 0.00 0.00 0.00 1.90
2072 2739 6.060788 CCGAGGGAGTAGTAGTTAGTAATGT 58.939 44.000 0.00 0.00 0.00 2.71
2073 2740 6.545298 CCGAGGGAGTAGTAGTTAGTAATGTT 59.455 42.308 0.00 0.00 0.00 2.71
2074 2741 7.067981 CCGAGGGAGTAGTAGTTAGTAATGTTT 59.932 40.741 0.00 0.00 0.00 2.83
2075 2742 8.465201 CGAGGGAGTAGTAGTTAGTAATGTTTT 58.535 37.037 0.00 0.00 0.00 2.43
2076 2743 9.800433 GAGGGAGTAGTAGTTAGTAATGTTTTC 57.200 37.037 0.00 0.00 0.00 2.29
2077 2744 9.544579 AGGGAGTAGTAGTTAGTAATGTTTTCT 57.455 33.333 0.00 0.00 0.00 2.52
2098 2765 6.165700 TCTTGACTAGTTTTAAAGGGACGT 57.834 37.500 0.00 0.00 0.00 4.34
2133 2800 3.066621 CACGTGTGGCATAATAGGCATTT 59.933 43.478 7.58 0.00 46.23 2.32
2252 2919 1.065053 TGCCACACGCCCAATAAGTAT 60.065 47.619 0.00 0.00 36.24 2.12
2262 2929 5.307196 ACGCCCAATAAGTATTACTCATCCT 59.693 40.000 0.00 0.00 30.46 3.24
2265 2932 6.651225 GCCCAATAAGTATTACTCATCCTCAC 59.349 42.308 0.00 0.00 30.46 3.51
2303 2971 3.120338 CGAAGCAAATATGACCACACGTT 60.120 43.478 0.00 0.00 0.00 3.99
2430 3099 6.253512 GCAACTCTCTTTGTTTTGGTTAACTG 59.746 38.462 5.42 0.00 0.00 3.16
2443 3112 4.465886 TGGTTAACTGTAGTTGCCATGTT 58.534 39.130 14.56 0.00 38.50 2.71
2529 3198 7.826744 TGCTACATATGGTCAAACAATAGTTGA 59.173 33.333 7.80 0.00 38.17 3.18
2603 3274 0.889994 TACCTGATTGCCACGTACGT 59.110 50.000 16.72 16.72 0.00 3.57
2650 3321 4.765273 ACGAATCATAGTTGCCATGTGTA 58.235 39.130 0.00 0.00 0.00 2.90
2656 3327 8.752005 AATCATAGTTGCCATGTGTATTTACT 57.248 30.769 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 2.801679 TGGTCGATTTTGTGTAACCGTC 59.198 45.455 0.00 0.00 34.36 4.79
53 54 3.245754 GTGACGTGGTCGATTTTGTGTAA 59.754 43.478 0.00 0.00 40.62 2.41
58 59 2.412716 CCATGTGACGTGGTCGATTTTG 60.413 50.000 15.64 0.00 40.62 2.44
119 120 1.524621 CCCCGCTCTGGTTGCATAG 60.525 63.158 0.00 0.00 35.15 2.23
150 432 1.876799 CCAAAGTACCACGCAATGACA 59.123 47.619 0.00 0.00 0.00 3.58
213 495 4.636249 AGATTCGACAAGATAAGCCATCC 58.364 43.478 0.00 0.00 33.75 3.51
214 498 4.384247 CGAGATTCGACAAGATAAGCCATC 59.616 45.833 0.00 0.00 43.74 3.51
240 524 3.297134 TTGAGATGATGGGGTTTAGGC 57.703 47.619 0.00 0.00 0.00 3.93
250 534 4.382470 GGACCTCCGGATATTGAGATGATG 60.382 50.000 3.57 0.00 0.00 3.07
343 630 9.993454 CTTCTTCTGATGTGATGATATAAAGGA 57.007 33.333 0.00 0.00 0.00 3.36
344 631 9.993454 TCTTCTTCTGATGTGATGATATAAAGG 57.007 33.333 0.00 0.00 0.00 3.11
351 638 6.289834 GGTGATCTTCTTCTGATGTGATGAT 58.710 40.000 0.00 0.00 0.00 2.45
352 639 5.396101 GGGTGATCTTCTTCTGATGTGATGA 60.396 44.000 0.00 0.00 0.00 2.92
353 640 4.815308 GGGTGATCTTCTTCTGATGTGATG 59.185 45.833 0.00 0.00 0.00 3.07
354 641 4.141528 GGGGTGATCTTCTTCTGATGTGAT 60.142 45.833 0.00 0.00 0.00 3.06
355 642 3.198635 GGGGTGATCTTCTTCTGATGTGA 59.801 47.826 0.00 0.00 0.00 3.58
356 643 3.054875 TGGGGTGATCTTCTTCTGATGTG 60.055 47.826 0.00 0.00 0.00 3.21
357 644 3.184628 TGGGGTGATCTTCTTCTGATGT 58.815 45.455 0.00 0.00 0.00 3.06
358 645 3.920231 TGGGGTGATCTTCTTCTGATG 57.080 47.619 0.00 0.00 0.00 3.07
359 646 3.434739 GCATGGGGTGATCTTCTTCTGAT 60.435 47.826 0.00 0.00 0.00 2.90
360 647 2.092753 GCATGGGGTGATCTTCTTCTGA 60.093 50.000 0.00 0.00 0.00 3.27
361 648 2.295885 GCATGGGGTGATCTTCTTCTG 58.704 52.381 0.00 0.00 0.00 3.02
362 649 1.918262 TGCATGGGGTGATCTTCTTCT 59.082 47.619 0.00 0.00 0.00 2.85
363 650 2.019984 GTGCATGGGGTGATCTTCTTC 58.980 52.381 0.00 0.00 0.00 2.87
385 678 1.469423 GGTAGGTGTCGCTTGACTAGC 60.469 57.143 0.00 0.00 46.83 3.42
427 720 2.280592 GGTGTGGAGTTTCGGCGT 60.281 61.111 6.85 0.00 0.00 5.68
441 734 0.388778 TTTCATGCATGCGCTTGGTG 60.389 50.000 22.25 11.10 42.17 4.17
442 735 0.108992 CTTTCATGCATGCGCTTGGT 60.109 50.000 22.25 0.00 42.17 3.67
444 737 2.547913 TACTTTCATGCATGCGCTTG 57.452 45.000 22.25 18.27 43.01 4.01
445 738 3.574284 TTTACTTTCATGCATGCGCTT 57.426 38.095 22.25 8.66 39.64 4.68
451 744 3.674138 CGCTGCCTTTTACTTTCATGCAT 60.674 43.478 0.00 0.00 0.00 3.96
462 760 1.451387 GGCCTAGCGCTGCCTTTTA 60.451 57.895 26.83 2.49 44.46 1.52
527 1170 2.059541 GCTCGTAGTGTCTTTGTGGTC 58.940 52.381 0.00 0.00 0.00 4.02
528 1171 1.602165 CGCTCGTAGTGTCTTTGTGGT 60.602 52.381 0.00 0.00 0.00 4.16
529 1172 1.060713 CGCTCGTAGTGTCTTTGTGG 58.939 55.000 0.00 0.00 0.00 4.17
530 1173 1.767289 ACGCTCGTAGTGTCTTTGTG 58.233 50.000 0.00 0.00 32.75 3.33
551 1194 9.972038 CCATGTAGGAGTACGTACGTAGGTACA 62.972 48.148 38.92 28.73 45.17 2.90
644 1287 1.957177 TCTCCTAGTCCTATGCTTGCG 59.043 52.381 0.00 0.00 0.00 4.85
690 1339 3.827008 TTCACATCAGTATCTGGAGCC 57.173 47.619 0.00 0.00 31.51 4.70
700 1349 6.595682 TCTTTCTTCTTCCTTTCACATCAGT 58.404 36.000 0.00 0.00 0.00 3.41
773 1422 3.184628 TGTGAGGAATCCAATCAGGTCT 58.815 45.455 0.61 0.00 39.02 3.85
935 1588 1.166531 GCGACCCTGTGCTCAGTTTT 61.167 55.000 14.31 0.00 39.82 2.43
936 1589 1.598130 GCGACCCTGTGCTCAGTTT 60.598 57.895 14.31 0.87 39.82 2.66
960 1613 1.814248 GCGTTTCTTGGGTCTTCCTGT 60.814 52.381 0.00 0.00 36.20 4.00
984 1637 1.214589 CATGCAACCAGCCAGAAGC 59.785 57.895 0.00 0.00 44.83 3.86
985 1638 1.214589 GCATGCAACCAGCCAGAAG 59.785 57.895 14.21 0.00 44.83 2.85
986 1639 1.529152 CTGCATGCAACCAGCCAGAA 61.529 55.000 22.88 0.00 44.83 3.02
994 1648 2.484062 CCCGATCCTGCATGCAACC 61.484 63.158 22.88 9.71 0.00 3.77
1353 2007 1.225963 GTAGGACAGCGACGACGAC 60.226 63.158 12.29 2.46 42.66 4.34
1672 2332 1.067060 TCTATCACCGATTCACAGCCG 59.933 52.381 0.00 0.00 0.00 5.52
1774 2434 9.077674 GCTCGAGAATTGTACATTCGATATTAT 57.922 33.333 18.75 3.49 39.26 1.28
1909 2573 4.038763 TCGTATCCGGCAGAAGAATAACAT 59.961 41.667 0.00 0.00 33.95 2.71
1925 2592 4.809426 CAGGGAGTACATGTTTTCGTATCC 59.191 45.833 2.30 1.64 0.00 2.59
1929 2596 3.764237 ACAGGGAGTACATGTTTTCGT 57.236 42.857 2.30 0.00 0.00 3.85
1936 2603 6.656632 ATGTCACTATACAGGGAGTACATG 57.343 41.667 0.00 0.00 33.85 3.21
1943 2610 8.375493 AGACTTTTTATGTCACTATACAGGGA 57.625 34.615 0.00 0.00 36.94 4.20
1965 2632 9.416794 GGGAGTAGTAGTAAACTTTTGTAAGAC 57.583 37.037 0.00 0.00 39.80 3.01
1966 2633 9.372189 AGGGAGTAGTAGTAAACTTTTGTAAGA 57.628 33.333 0.00 0.00 39.80 2.10
1967 2634 9.636879 GAGGGAGTAGTAGTAAACTTTTGTAAG 57.363 37.037 0.00 0.00 39.80 2.34
1968 2635 8.588472 GGAGGGAGTAGTAGTAAACTTTTGTAA 58.412 37.037 0.00 0.00 39.80 2.41
1969 2636 7.729881 TGGAGGGAGTAGTAGTAAACTTTTGTA 59.270 37.037 0.00 0.00 39.80 2.41
1970 2637 6.556116 TGGAGGGAGTAGTAGTAAACTTTTGT 59.444 38.462 0.00 0.00 39.80 2.83
1971 2638 7.001099 TGGAGGGAGTAGTAGTAAACTTTTG 57.999 40.000 0.00 0.00 39.80 2.44
1972 2639 7.809880 ATGGAGGGAGTAGTAGTAAACTTTT 57.190 36.000 0.00 0.00 39.80 2.27
1973 2640 7.092979 GGAATGGAGGGAGTAGTAGTAAACTTT 60.093 40.741 0.00 0.00 39.80 2.66
1974 2641 6.383436 GGAATGGAGGGAGTAGTAGTAAACTT 59.617 42.308 0.00 0.00 39.80 2.66
1975 2642 5.898397 GGAATGGAGGGAGTAGTAGTAAACT 59.102 44.000 0.00 0.00 42.62 2.66
1976 2643 5.659971 TGGAATGGAGGGAGTAGTAGTAAAC 59.340 44.000 0.00 0.00 0.00 2.01
1977 2644 5.845734 TGGAATGGAGGGAGTAGTAGTAAA 58.154 41.667 0.00 0.00 0.00 2.01
1978 2645 5.476950 TGGAATGGAGGGAGTAGTAGTAA 57.523 43.478 0.00 0.00 0.00 2.24
1979 2646 5.476950 TTGGAATGGAGGGAGTAGTAGTA 57.523 43.478 0.00 0.00 0.00 1.82
1980 2647 4.348020 TTGGAATGGAGGGAGTAGTAGT 57.652 45.455 0.00 0.00 0.00 2.73
1981 2648 5.693769 TTTTGGAATGGAGGGAGTAGTAG 57.306 43.478 0.00 0.00 0.00 2.57
1982 2649 7.758820 TTATTTTGGAATGGAGGGAGTAGTA 57.241 36.000 0.00 0.00 0.00 1.82
1983 2650 6.652205 TTATTTTGGAATGGAGGGAGTAGT 57.348 37.500 0.00 0.00 0.00 2.73
1984 2651 7.779798 TCATTTATTTTGGAATGGAGGGAGTAG 59.220 37.037 0.00 0.00 34.74 2.57
1985 2652 7.559897 GTCATTTATTTTGGAATGGAGGGAGTA 59.440 37.037 0.00 0.00 34.74 2.59
1986 2653 6.381133 GTCATTTATTTTGGAATGGAGGGAGT 59.619 38.462 0.00 0.00 34.74 3.85
1987 2654 6.183360 GGTCATTTATTTTGGAATGGAGGGAG 60.183 42.308 0.00 0.00 34.74 4.30
1988 2655 5.660864 GGTCATTTATTTTGGAATGGAGGGA 59.339 40.000 0.00 0.00 34.74 4.20
1989 2656 5.163311 GGGTCATTTATTTTGGAATGGAGGG 60.163 44.000 0.00 0.00 34.74 4.30
1990 2657 5.424895 TGGGTCATTTATTTTGGAATGGAGG 59.575 40.000 0.00 0.00 34.74 4.30
1991 2658 6.543430 TGGGTCATTTATTTTGGAATGGAG 57.457 37.500 0.00 0.00 34.74 3.86
1992 2659 6.500049 AGTTGGGTCATTTATTTTGGAATGGA 59.500 34.615 0.00 0.00 34.74 3.41
1993 2660 6.710278 AGTTGGGTCATTTATTTTGGAATGG 58.290 36.000 0.00 0.00 34.74 3.16
1994 2661 9.369904 CTAAGTTGGGTCATTTATTTTGGAATG 57.630 33.333 0.00 0.00 35.18 2.67
1995 2662 9.100197 ACTAAGTTGGGTCATTTATTTTGGAAT 57.900 29.630 0.00 0.00 0.00 3.01
1996 2663 8.485578 ACTAAGTTGGGTCATTTATTTTGGAA 57.514 30.769 0.00 0.00 0.00 3.53
1997 2664 9.016438 GTACTAAGTTGGGTCATTTATTTTGGA 57.984 33.333 0.00 0.00 0.00 3.53
1998 2665 8.798402 TGTACTAAGTTGGGTCATTTATTTTGG 58.202 33.333 0.00 0.00 0.00 3.28
2002 2669 9.582648 ACTTTGTACTAAGTTGGGTCATTTATT 57.417 29.630 15.68 0.00 34.81 1.40
2003 2670 9.582648 AACTTTGTACTAAGTTGGGTCATTTAT 57.417 29.630 27.27 5.89 44.42 1.40
2004 2671 8.983702 AACTTTGTACTAAGTTGGGTCATTTA 57.016 30.769 27.27 0.00 44.42 1.40
2005 2672 7.891498 AACTTTGTACTAAGTTGGGTCATTT 57.109 32.000 27.27 6.95 44.42 2.32
2014 2681 6.838382 AGATGACCCAACTTTGTACTAAGTT 58.162 36.000 23.96 23.96 46.42 2.66
2015 2682 6.435292 AGATGACCCAACTTTGTACTAAGT 57.565 37.500 15.68 15.68 39.97 2.24
2016 2683 9.449719 AAATAGATGACCCAACTTTGTACTAAG 57.550 33.333 14.42 14.42 0.00 2.18
2017 2684 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
2018 2685 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2019 2686 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
2020 2687 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
2021 2688 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
2022 2689 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
2023 2690 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
2024 2691 6.014584 GGTTCCAAAATAGATGACCCAACTTT 60.015 38.462 0.00 0.00 0.00 2.66
2025 2692 5.480422 GGTTCCAAAATAGATGACCCAACTT 59.520 40.000 0.00 0.00 0.00 2.66
2026 2693 5.016831 GGTTCCAAAATAGATGACCCAACT 58.983 41.667 0.00 0.00 0.00 3.16
2027 2694 4.142469 CGGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2028 2695 4.013728 CGGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2029 2696 3.264706 TCGGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2030 2697 3.877508 CTCGGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2031 2698 3.877508 CCTCGGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2032 2699 3.877508 CCCTCGGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2033 2700 3.778075 TCCCTCGGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2034 2701 4.130118 CTCCCTCGGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2035 2702 3.780850 ACTCCCTCGGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2036 2703 3.178865 ACTCCCTCGGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2037 2704 3.629142 ACTCCCTCGGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2038 2705 4.098894 ACTACTCCCTCGGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
2039 2706 2.910977 ACTACTCCCTCGGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
2040 2707 2.332117 ACTACTCCCTCGGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
2041 2708 2.019807 ACTACTCCCTCGGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2042 2709 2.042162 ACTACTACTCCCTCGGTTCCAA 59.958 50.000 0.00 0.00 0.00 3.53
2043 2710 1.637553 ACTACTACTCCCTCGGTTCCA 59.362 52.381 0.00 0.00 0.00 3.53
2044 2711 2.433662 ACTACTACTCCCTCGGTTCC 57.566 55.000 0.00 0.00 0.00 3.62
2045 2712 4.522114 ACTAACTACTACTCCCTCGGTTC 58.478 47.826 0.00 0.00 0.00 3.62
2046 2713 4.582973 ACTAACTACTACTCCCTCGGTT 57.417 45.455 0.00 0.00 0.00 4.44
2047 2714 5.700402 TTACTAACTACTACTCCCTCGGT 57.300 43.478 0.00 0.00 0.00 4.69
2048 2715 6.060788 ACATTACTAACTACTACTCCCTCGG 58.939 44.000 0.00 0.00 0.00 4.63
2049 2716 7.565323 AACATTACTAACTACTACTCCCTCG 57.435 40.000 0.00 0.00 0.00 4.63
2050 2717 9.800433 GAAAACATTACTAACTACTACTCCCTC 57.200 37.037 0.00 0.00 0.00 4.30
2051 2718 9.544579 AGAAAACATTACTAACTACTACTCCCT 57.455 33.333 0.00 0.00 0.00 4.20
2069 2736 9.416284 TCCCTTTAAAACTAGTCAAGAAAACAT 57.584 29.630 0.00 0.00 0.00 2.71
2070 2737 8.680001 GTCCCTTTAAAACTAGTCAAGAAAACA 58.320 33.333 0.00 0.00 0.00 2.83
2071 2738 7.854422 CGTCCCTTTAAAACTAGTCAAGAAAAC 59.146 37.037 0.00 0.00 0.00 2.43
2072 2739 7.553760 ACGTCCCTTTAAAACTAGTCAAGAAAA 59.446 33.333 0.00 0.00 0.00 2.29
2073 2740 7.049754 ACGTCCCTTTAAAACTAGTCAAGAAA 58.950 34.615 0.00 0.00 0.00 2.52
2074 2741 6.585416 ACGTCCCTTTAAAACTAGTCAAGAA 58.415 36.000 0.00 0.00 0.00 2.52
2075 2742 6.165700 ACGTCCCTTTAAAACTAGTCAAGA 57.834 37.500 0.00 0.00 0.00 3.02
2076 2743 5.118203 CGACGTCCCTTTAAAACTAGTCAAG 59.882 44.000 10.58 0.00 0.00 3.02
2077 2744 4.984161 CGACGTCCCTTTAAAACTAGTCAA 59.016 41.667 10.58 0.00 0.00 3.18
2078 2745 4.278170 TCGACGTCCCTTTAAAACTAGTCA 59.722 41.667 10.58 0.00 0.00 3.41
2079 2746 4.798574 TCGACGTCCCTTTAAAACTAGTC 58.201 43.478 10.58 0.00 0.00 2.59
2089 2756 1.411612 GGTGGATATCGACGTCCCTTT 59.588 52.381 10.58 0.00 33.45 3.11
2091 2758 0.106369 TGGTGGATATCGACGTCCCT 60.106 55.000 10.58 0.00 33.45 4.20
2092 2759 0.031721 GTGGTGGATATCGACGTCCC 59.968 60.000 10.58 5.36 33.45 4.46
2151 2818 4.124943 CTGCCCCCTGCTCATGCT 62.125 66.667 0.00 0.00 42.00 3.79
2173 2840 2.267642 GCCGATACACAGCCCACA 59.732 61.111 0.00 0.00 0.00 4.17
2185 2852 1.933853 GCAATTCTACTGTTCGCCGAT 59.066 47.619 0.00 0.00 0.00 4.18
2187 2854 0.373716 GGCAATTCTACTGTTCGCCG 59.626 55.000 0.00 0.00 0.00 6.46
2252 2919 1.672854 CGCGGGGTGAGGATGAGTAA 61.673 60.000 0.00 0.00 0.00 2.24
2294 2962 4.539083 TGCGCCAGAACGTGTGGT 62.539 61.111 16.49 0.00 37.40 4.16
2303 2971 4.321750 GGTACTTATTATAGCTGCGCCAGA 60.322 45.833 4.18 0.00 32.44 3.86
2321 2990 3.524606 CGTCATCCCGCGGGTACT 61.525 66.667 41.57 25.27 36.47 2.73
2430 3099 9.730420 CTACCATAAATTAAACATGGCAACTAC 57.270 33.333 11.35 0.00 42.54 2.73
2529 3198 3.818773 GGCAACTAGGTAAACACACATGT 59.181 43.478 0.00 0.00 42.46 3.21
2650 3321 4.033587 CGCGTACATGGCAACTAAGTAAAT 59.966 41.667 0.00 0.00 37.61 1.40
2656 3327 0.670854 TGCGCGTACATGGCAACTAA 60.671 50.000 8.43 0.00 33.01 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.