Multiple sequence alignment - TraesCS4D01G076500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G076500 chr4D 100.000 4489 0 0 1 4489 50978709 50974221 0.000000e+00 8290.0
1 TraesCS4D01G076500 chr4D 85.404 507 60 7 6 509 488136234 488135739 8.610000e-142 514.0
2 TraesCS4D01G076500 chr4D 79.736 681 90 23 6 642 502706105 502705429 2.460000e-122 449.0
3 TraesCS4D01G076500 chr4D 87.324 284 26 10 4021 4299 50974411 50974689 2.610000e-82 316.0
4 TraesCS4D01G076500 chr4D 95.000 40 1 1 4266 4305 363923959 363923921 1.350000e-05 62.1
5 TraesCS4D01G076500 chr4D 88.000 50 2 4 4266 4313 298526818 298526771 6.270000e-04 56.5
6 TraesCS4D01G076500 chr4A 91.560 3116 157 47 593 3646 546017295 546020366 0.000000e+00 4200.0
7 TraesCS4D01G076500 chr4A 92.343 431 25 5 3638 4064 546061815 546062241 1.380000e-169 606.0
8 TraesCS4D01G076500 chr4A 84.058 621 64 13 3 590 546016639 546017257 2.340000e-157 566.0
9 TraesCS4D01G076500 chr4A 93.810 210 12 1 4050 4259 729882751 729882959 9.370000e-82 315.0
10 TraesCS4D01G076500 chr4A 92.958 213 15 0 4050 4262 738842322 738842534 1.210000e-80 311.0
11 TraesCS4D01G076500 chr4A 85.470 234 28 6 4258 4489 546062267 546062496 5.800000e-59 239.0
12 TraesCS4D01G076500 chr4A 93.182 44 2 1 4266 4309 743442985 743442943 3.750000e-06 63.9
13 TraesCS4D01G076500 chr4B 90.583 1423 63 28 761 2145 75041196 75039807 0.000000e+00 1820.0
14 TraesCS4D01G076500 chr4B 93.327 1019 43 10 2137 3145 75039453 75038450 0.000000e+00 1482.0
15 TraesCS4D01G076500 chr4B 94.588 813 40 2 3199 4011 75038445 75037637 0.000000e+00 1254.0
16 TraesCS4D01G076500 chr2D 84.304 618 65 11 3 589 73486403 73487019 3.890000e-160 575.0
17 TraesCS4D01G076500 chr2D 84.969 479 49 5 3 458 372609334 372609812 8.800000e-127 464.0
18 TraesCS4D01G076500 chr2D 81.090 624 58 22 29 593 509226945 509226323 1.150000e-120 444.0
19 TraesCS4D01G076500 chr2D 96.020 201 7 1 4063 4262 248684804 248684604 4.330000e-85 326.0
20 TraesCS4D01G076500 chr2D 92.857 56 3 1 4008 4062 79419644 79419699 3.720000e-11 80.5
21 TraesCS4D01G076500 chr2D 95.238 42 1 1 4264 4305 38066386 38066426 1.040000e-06 65.8
22 TraesCS4D01G076500 chr2B 83.036 672 75 17 6 639 724735996 724735326 1.400000e-159 573.0
23 TraesCS4D01G076500 chr2B 88.333 60 3 4 4266 4325 550399719 550399664 8.060000e-08 69.4
24 TraesCS4D01G076500 chr5D 84.228 615 59 17 6 583 459145514 459144901 8.430000e-157 564.0
25 TraesCS4D01G076500 chr5D 82.689 543 81 8 1082 1615 89045338 89045876 1.890000e-128 470.0
26 TraesCS4D01G076500 chr5D 77.976 168 33 3 3266 3431 89048633 89048798 7.940000e-18 102.0
27 TraesCS4D01G076500 chr5D 97.959 49 0 1 4015 4063 395728038 395728085 2.880000e-12 84.2
28 TraesCS4D01G076500 chr5D 96.154 52 1 1 4012 4063 513975156 513975106 2.880000e-12 84.2
29 TraesCS4D01G076500 chr5D 88.889 63 3 2 3999 4059 444709646 444709706 1.730000e-09 75.0
30 TraesCS4D01G076500 chr5D 95.000 40 2 0 4266 4305 400284693 400284732 3.750000e-06 63.9
31 TraesCS4D01G076500 chr5D 83.077 65 7 4 4269 4332 451624695 451624634 6.270000e-04 56.5
32 TraesCS4D01G076500 chr3B 86.346 520 54 8 7 509 75322882 75322363 6.560000e-153 551.0
33 TraesCS4D01G076500 chr3B 80.630 635 61 26 6 593 507278857 507278238 6.900000e-118 435.0
34 TraesCS4D01G076500 chr3B 91.525 59 1 3 4005 4063 247566310 247566256 1.340000e-10 78.7
35 TraesCS4D01G076500 chr3B 100.000 39 0 0 4264 4302 161129566 161129528 6.230000e-09 73.1
36 TraesCS4D01G076500 chr3B 97.619 42 0 1 4266 4307 112281217 112281177 2.240000e-08 71.3
37 TraesCS4D01G076500 chr6A 84.866 522 57 8 6 517 435311296 435311805 1.440000e-139 507.0
38 TraesCS4D01G076500 chr6A 89.046 283 29 2 3 283 571018132 571018414 2.570000e-92 350.0
39 TraesCS4D01G076500 chr6A 84.058 69 3 7 4266 4327 148527168 148527235 4.850000e-05 60.2
40 TraesCS4D01G076500 chr1D 81.659 627 70 20 4 589 88219552 88220174 3.140000e-131 479.0
41 TraesCS4D01G076500 chr5B 84.190 506 64 9 1 491 438501456 438501960 1.130000e-130 477.0
42 TraesCS4D01G076500 chr5B 82.657 542 81 8 1085 1617 95023308 95022771 6.800000e-128 468.0
43 TraesCS4D01G076500 chr5A 83.556 523 73 8 1082 1595 82982249 82982767 1.130000e-130 477.0
44 TraesCS4D01G076500 chr7B 79.599 598 80 21 29 585 481811570 481810974 1.510000e-104 390.0
45 TraesCS4D01G076500 chr7B 83.529 85 9 5 3982 4062 248548907 248548824 1.730000e-09 75.0
46 TraesCS4D01G076500 chrUn 89.153 295 30 1 7 299 39498370 39498664 2.550000e-97 366.0
47 TraesCS4D01G076500 chrUn 100.000 37 0 0 4266 4302 348315162 348315198 8.060000e-08 69.4
48 TraesCS4D01G076500 chrUn 100.000 37 0 0 4266 4302 427230645 427230609 8.060000e-08 69.4
49 TraesCS4D01G076500 chrUn 100.000 33 0 0 4266 4298 28955468 28955436 1.350000e-05 62.1
50 TraesCS4D01G076500 chrUn 100.000 33 0 0 4266 4298 31324830 31324798 1.350000e-05 62.1
51 TraesCS4D01G076500 chrUn 100.000 33 0 0 4266 4298 101630852 101630884 1.350000e-05 62.1
52 TraesCS4D01G076500 chrUn 100.000 33 0 0 4266 4298 205782143 205782111 1.350000e-05 62.1
53 TraesCS4D01G076500 chrUn 97.143 35 1 0 4266 4300 122074113 122074079 4.850000e-05 60.2
54 TraesCS4D01G076500 chrUn 97.143 35 1 0 4264 4298 196940116 196940150 4.850000e-05 60.2
55 TraesCS4D01G076500 chrUn 97.143 35 1 0 4264 4298 196947414 196947448 4.850000e-05 60.2
56 TraesCS4D01G076500 chrUn 97.143 35 1 0 4264 4298 253330803 253330837 4.850000e-05 60.2
57 TraesCS4D01G076500 chrUn 92.857 42 1 2 4264 4303 331418943 331418902 4.850000e-05 60.2
58 TraesCS4D01G076500 chrUn 92.857 42 1 2 4264 4303 337043212 337043171 4.850000e-05 60.2
59 TraesCS4D01G076500 chrUn 92.857 42 1 2 4264 4303 339108671 339108630 4.850000e-05 60.2
60 TraesCS4D01G076500 chrUn 88.000 50 4 1 4262 4311 71536639 71536592 1.740000e-04 58.4
61 TraesCS4D01G076500 chrUn 94.595 37 2 0 4262 4298 245539620 245539656 1.740000e-04 58.4
62 TraesCS4D01G076500 chr6D 78.179 637 67 27 3 589 338512496 338513110 1.550000e-89 340.0
63 TraesCS4D01G076500 chr6D 96.500 200 7 0 4060 4259 269564366 269564565 9.310000e-87 331.0
64 TraesCS4D01G076500 chr6D 95.122 205 9 1 4058 4261 60237777 60237981 5.600000e-84 322.0
65 TraesCS4D01G076500 chr6D 97.368 38 0 1 4266 4302 2784279 2784316 3.750000e-06 63.9
66 TraesCS4D01G076500 chr6D 91.304 46 1 3 4269 4313 382614144 382614101 4.850000e-05 60.2
67 TraesCS4D01G076500 chr6D 92.683 41 3 0 4262 4302 401752459 401752419 4.850000e-05 60.2
68 TraesCS4D01G076500 chr6B 78.179 637 67 32 6 592 481846159 481845545 1.550000e-89 340.0
69 TraesCS4D01G076500 chr6B 93.023 215 12 3 4053 4266 718624386 718624598 1.210000e-80 311.0
70 TraesCS4D01G076500 chr6B 91.489 47 2 2 4266 4312 672534954 672534998 3.750000e-06 63.9
71 TraesCS4D01G076500 chr7D 95.545 202 9 0 4061 4262 118874829 118874628 1.560000e-84 324.0
72 TraesCS4D01G076500 chr7D 93.182 44 1 2 4266 4309 218418357 218418398 3.750000e-06 63.9
73 TraesCS4D01G076500 chr3D 95.074 203 10 0 4059 4261 205017028 205017230 2.010000e-83 320.0
74 TraesCS4D01G076500 chr3D 95.238 42 1 1 4266 4307 67481264 67481224 1.040000e-06 65.8
75 TraesCS4D01G076500 chr3D 93.182 44 1 2 4266 4307 22679112 22679155 3.750000e-06 63.9
76 TraesCS4D01G076500 chr3D 93.182 44 1 2 4266 4307 22767846 22767803 3.750000e-06 63.9
77 TraesCS4D01G076500 chr3D 93.182 44 2 1 4266 4309 543876814 543876856 3.750000e-06 63.9
78 TraesCS4D01G076500 chr3D 97.222 36 1 0 4266 4301 169888183 169888218 1.350000e-05 62.1
79 TraesCS4D01G076500 chr3D 91.304 46 3 1 4266 4311 555303120 555303076 1.350000e-05 62.1
80 TraesCS4D01G076500 chr2A 80.503 318 36 14 300 592 671277707 671278023 2.100000e-53 220.0
81 TraesCS4D01G076500 chr2A 93.333 45 3 0 4259 4303 778616529 778616485 2.900000e-07 67.6
82 TraesCS4D01G076500 chr7A 92.857 56 3 1 4009 4063 7501052 7501107 3.720000e-11 80.5
83 TraesCS4D01G076500 chr1A 100.000 35 0 0 4266 4300 306569233 306569267 1.040000e-06 65.8
84 TraesCS4D01G076500 chr1A 95.000 40 2 0 4266 4305 536892702 536892663 3.750000e-06 63.9
85 TraesCS4D01G076500 chr1A 95.000 40 2 0 4259 4298 550888548 550888587 3.750000e-06 63.9
86 TraesCS4D01G076500 chr1A 91.111 45 2 2 4266 4309 131963621 131963578 4.850000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G076500 chr4D 50974221 50978709 4488 True 8290.000000 8290 100.000000 1 4489 1 chr4D.!!$R1 4488
1 TraesCS4D01G076500 chr4D 502705429 502706105 676 True 449.000000 449 79.736000 6 642 1 chr4D.!!$R5 636
2 TraesCS4D01G076500 chr4A 546016639 546020366 3727 False 2383.000000 4200 87.809000 3 3646 2 chr4A.!!$F3 3643
3 TraesCS4D01G076500 chr4A 546061815 546062496 681 False 422.500000 606 88.906500 3638 4489 2 chr4A.!!$F4 851
4 TraesCS4D01G076500 chr4B 75037637 75041196 3559 True 1518.666667 1820 92.832667 761 4011 3 chr4B.!!$R1 3250
5 TraesCS4D01G076500 chr2D 73486403 73487019 616 False 575.000000 575 84.304000 3 589 1 chr2D.!!$F2 586
6 TraesCS4D01G076500 chr2D 509226323 509226945 622 True 444.000000 444 81.090000 29 593 1 chr2D.!!$R2 564
7 TraesCS4D01G076500 chr2B 724735326 724735996 670 True 573.000000 573 83.036000 6 639 1 chr2B.!!$R2 633
8 TraesCS4D01G076500 chr5D 459144901 459145514 613 True 564.000000 564 84.228000 6 583 1 chr5D.!!$R2 577
9 TraesCS4D01G076500 chr5D 89045338 89048798 3460 False 286.000000 470 80.332500 1082 3431 2 chr5D.!!$F4 2349
10 TraesCS4D01G076500 chr3B 75322363 75322882 519 True 551.000000 551 86.346000 7 509 1 chr3B.!!$R1 502
11 TraesCS4D01G076500 chr3B 507278238 507278857 619 True 435.000000 435 80.630000 6 593 1 chr3B.!!$R5 587
12 TraesCS4D01G076500 chr6A 435311296 435311805 509 False 507.000000 507 84.866000 6 517 1 chr6A.!!$F2 511
13 TraesCS4D01G076500 chr1D 88219552 88220174 622 False 479.000000 479 81.659000 4 589 1 chr1D.!!$F1 585
14 TraesCS4D01G076500 chr5B 438501456 438501960 504 False 477.000000 477 84.190000 1 491 1 chr5B.!!$F1 490
15 TraesCS4D01G076500 chr5B 95022771 95023308 537 True 468.000000 468 82.657000 1085 1617 1 chr5B.!!$R1 532
16 TraesCS4D01G076500 chr5A 82982249 82982767 518 False 477.000000 477 83.556000 1082 1595 1 chr5A.!!$F1 513
17 TraesCS4D01G076500 chr7B 481810974 481811570 596 True 390.000000 390 79.599000 29 585 1 chr7B.!!$R2 556
18 TraesCS4D01G076500 chr6D 338512496 338513110 614 False 340.000000 340 78.179000 3 589 1 chr6D.!!$F4 586
19 TraesCS4D01G076500 chr6B 481845545 481846159 614 True 340.000000 340 78.179000 6 592 1 chr6B.!!$R1 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
576 646 0.248661 CACGGATGTAGACGAGGCTG 60.249 60.0 0.0 0.0 0.0 4.85 F
1729 1862 0.901827 TGCGGCTGACTCCAAATCTA 59.098 50.0 0.0 0.0 0.0 1.98 F
1754 1887 0.392706 TGAGAACGTCCATGTGCTGT 59.607 50.0 0.0 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1732 1865 1.276138 AGCACATGGACGTTCTCATCA 59.724 47.619 0.0 0.0 0.00 3.07 R
3076 4371 0.034337 GCTCCTTGGACACCAACGTA 59.966 55.000 0.0 0.0 38.75 3.57 R
3577 5301 1.421646 GCTGACTATACCCCCAATGCT 59.578 52.381 0.0 0.0 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 26 2.805897 AGAGAGCTCTGTCCATCGG 58.194 57.895 23.91 0.00 38.75 4.18
277 283 3.636300 CTCATCATCGTCTCCTCCTCTTT 59.364 47.826 0.00 0.00 0.00 2.52
286 307 0.604780 TCCTCCTCTTTCGACGACGT 60.605 55.000 0.00 0.00 40.69 4.34
336 377 2.703409 GATGGCTACAACTGCGCG 59.297 61.111 0.00 0.00 0.00 6.86
397 439 7.029563 GTGGAGATCGCTTTGTTTCAATTTAT 58.970 34.615 0.00 0.00 0.00 1.40
439 489 1.928503 TCAAGTTGTCCGTCGTTTGAC 59.071 47.619 2.11 0.00 41.91 3.18
510 566 1.872952 TCTGTGTCCGTTTGCTGATTG 59.127 47.619 0.00 0.00 0.00 2.67
530 600 7.860613 TGATTGACGTAGCATGGTTTAATATG 58.139 34.615 1.12 0.00 0.00 1.78
566 636 6.578163 TCGGATATGAAATACACGGATGTA 57.422 37.500 0.00 0.00 45.37 2.29
576 646 0.248661 CACGGATGTAGACGAGGCTG 60.249 60.000 0.00 0.00 0.00 4.85
613 718 2.357952 GGCGTTTGAGGGGTCATATTTC 59.642 50.000 0.00 0.00 0.00 2.17
651 756 6.753913 AGATGCTCTACAATCCAATCCTAA 57.246 37.500 0.00 0.00 0.00 2.69
655 760 4.632153 CTCTACAATCCAATCCTAACCCG 58.368 47.826 0.00 0.00 0.00 5.28
657 762 1.318576 CAATCCAATCCTAACCCGCC 58.681 55.000 0.00 0.00 0.00 6.13
658 763 0.923358 AATCCAATCCTAACCCGCCA 59.077 50.000 0.00 0.00 0.00 5.69
660 765 1.152963 CCAATCCTAACCCGCCAGG 60.153 63.158 0.00 0.00 43.78 4.45
671 776 2.735772 CCGCCAGGTAGGACTGCAT 61.736 63.158 0.00 0.00 41.22 3.96
688 793 7.393234 AGGACTGCATGTAAAGCACTTAAATTA 59.607 33.333 0.00 0.00 37.02 1.40
693 798 9.734620 TGCATGTAAAGCACTTAAATTATGATC 57.265 29.630 0.00 0.00 37.02 2.92
778 897 2.172851 TTTTCGCCTGTACGGTTCAT 57.827 45.000 0.00 0.00 34.25 2.57
834 953 2.028130 ACACCAGCCAAAATGTTTCGA 58.972 42.857 0.00 0.00 0.00 3.71
869 988 6.310764 TCCGGGGTGTATATTTAGTTTTGA 57.689 37.500 0.00 0.00 0.00 2.69
870 989 6.114767 TCCGGGGTGTATATTTAGTTTTGAC 58.885 40.000 0.00 0.00 0.00 3.18
871 990 6.070078 TCCGGGGTGTATATTTAGTTTTGACT 60.070 38.462 0.00 0.00 0.00 3.41
872 991 6.600427 CCGGGGTGTATATTTAGTTTTGACTT 59.400 38.462 0.00 0.00 0.00 3.01
873 992 7.121611 CCGGGGTGTATATTTAGTTTTGACTTT 59.878 37.037 0.00 0.00 0.00 2.66
874 993 8.517056 CGGGGTGTATATTTAGTTTTGACTTTT 58.483 33.333 0.00 0.00 0.00 2.27
875 994 9.634163 GGGGTGTATATTTAGTTTTGACTTTTG 57.366 33.333 0.00 0.00 0.00 2.44
949 1073 1.401018 CCGAAACATCCGGCAAAGAAC 60.401 52.381 0.00 0.00 40.54 3.01
994 1118 2.980233 GCAGCTTCACCGCCTGTT 60.980 61.111 0.00 0.00 0.00 3.16
1141 1268 2.607668 GATCGTCGTGTCCATCGCCA 62.608 60.000 0.00 0.00 0.00 5.69
1404 1537 2.434774 GCCACCGGGAAGAACCTT 59.565 61.111 6.32 0.00 38.98 3.50
1545 1678 2.187946 CTCAGCCGCGGATTCCTT 59.812 61.111 33.48 2.76 0.00 3.36
1669 1802 9.917887 AAGATGTTTGAGATATTCTGGAGATTT 57.082 29.630 0.00 0.00 0.00 2.17
1671 1804 9.118300 GATGTTTGAGATATTCTGGAGATTTGT 57.882 33.333 0.00 0.00 0.00 2.83
1673 1806 8.733458 TGTTTGAGATATTCTGGAGATTTGTTG 58.267 33.333 0.00 0.00 0.00 3.33
1675 1808 9.690913 TTTGAGATATTCTGGAGATTTGTTGAT 57.309 29.630 0.00 0.00 0.00 2.57
1682 1815 7.822161 TTCTGGAGATTTGTTGATTTTGAGA 57.178 32.000 0.00 0.00 0.00 3.27
1683 1816 8.413309 TTCTGGAGATTTGTTGATTTTGAGAT 57.587 30.769 0.00 0.00 0.00 2.75
1684 1817 9.519191 TTCTGGAGATTTGTTGATTTTGAGATA 57.481 29.630 0.00 0.00 0.00 1.98
1685 1818 9.690913 TCTGGAGATTTGTTGATTTTGAGATAT 57.309 29.630 0.00 0.00 0.00 1.63
1712 1845 2.172293 AGATGACCTCCCAGAAATCTGC 59.828 50.000 4.87 0.00 42.47 4.26
1717 1850 1.078214 TCCCAGAAATCTGCGGCTG 60.078 57.895 4.87 0.00 42.47 4.85
1729 1862 0.901827 TGCGGCTGACTCCAAATCTA 59.098 50.000 0.00 0.00 0.00 1.98
1732 1865 3.324846 TGCGGCTGACTCCAAATCTATAT 59.675 43.478 0.00 0.00 0.00 0.86
1740 1873 8.093307 GCTGACTCCAAATCTATATGATGAGAA 58.907 37.037 0.00 0.00 35.21 2.87
1754 1887 0.392706 TGAGAACGTCCATGTGCTGT 59.607 50.000 0.00 0.00 0.00 4.40
1803 1936 5.445673 CGCAGCAAAACTTGAAATTTGAACA 60.446 36.000 0.00 0.00 38.50 3.18
1804 1937 5.961263 GCAGCAAAACTTGAAATTTGAACAG 59.039 36.000 0.00 0.00 38.50 3.16
1817 1950 9.734620 TGAAATTTGAACAGATTAGTTTCAGTG 57.265 29.630 0.00 0.00 32.49 3.66
1870 2356 9.607988 TCTGATTAAGTTAGTTTCAGTTTGTGA 57.392 29.630 14.32 0.00 36.17 3.58
1905 2412 4.422840 CAGAACTCTGAGTCAGTATGCAG 58.577 47.826 19.53 11.55 46.59 4.41
2072 2594 6.906659 GCACTATGCATGAAAACTAGCATAT 58.093 36.000 10.16 0.00 45.60 1.78
2075 2597 7.000472 ACTATGCATGAAAACTAGCATATGGT 59.000 34.615 10.16 12.78 45.60 3.55
2130 2658 5.235186 CAGTATTACCTGAACTACTGCATGC 59.765 44.000 11.82 11.82 35.95 4.06
2150 3040 3.509184 TGCAGCACCAGTATTTGCAAATA 59.491 39.130 24.63 24.63 41.34 1.40
2227 3509 3.072622 AGAAGGTTTCACTCCACTTACCC 59.927 47.826 0.00 0.00 0.00 3.69
2229 3511 3.053826 AGGTTTCACTCCACTTACCCTT 58.946 45.455 0.00 0.00 0.00 3.95
2231 3513 4.661709 AGGTTTCACTCCACTTACCCTTAA 59.338 41.667 0.00 0.00 0.00 1.85
2232 3514 5.312443 AGGTTTCACTCCACTTACCCTTAAT 59.688 40.000 0.00 0.00 0.00 1.40
2233 3515 6.502863 AGGTTTCACTCCACTTACCCTTAATA 59.497 38.462 0.00 0.00 0.00 0.98
2235 3517 8.488668 GGTTTCACTCCACTTACCCTTAATATA 58.511 37.037 0.00 0.00 0.00 0.86
2263 3546 8.519492 TTTTCATCAGCTTTATTTTCCTTTCG 57.481 30.769 0.00 0.00 0.00 3.46
2309 3592 4.568072 TTGGAGGCTCTATTTGCAGTTA 57.432 40.909 15.23 0.00 0.00 2.24
2394 3677 8.803397 AAAGACCTAATTGTTGGTAAGTATCC 57.197 34.615 0.00 0.00 36.59 2.59
2395 3678 7.750947 AGACCTAATTGTTGGTAAGTATCCT 57.249 36.000 0.00 0.00 36.59 3.24
2396 3679 8.159229 AGACCTAATTGTTGGTAAGTATCCTT 57.841 34.615 0.00 0.00 36.59 3.36
2397 3680 8.612145 AGACCTAATTGTTGGTAAGTATCCTTT 58.388 33.333 0.00 0.00 36.59 3.11
2398 3681 9.239551 GACCTAATTGTTGGTAAGTATCCTTTT 57.760 33.333 0.00 0.00 36.59 2.27
2399 3682 9.596308 ACCTAATTGTTGGTAAGTATCCTTTTT 57.404 29.630 0.00 0.00 34.36 1.94
2441 3731 9.473007 TCTTAACACATTCCATTATTTGATCCA 57.527 29.630 0.00 0.00 0.00 3.41
2449 3744 9.692749 CATTCCATTATTTGATCCATTCTTCAG 57.307 33.333 0.00 0.00 0.00 3.02
2456 3751 2.234661 TGATCCATTCTTCAGCTGACGT 59.765 45.455 18.03 0.00 0.00 4.34
2461 3756 3.364366 CCATTCTTCAGCTGACGTGAAAC 60.364 47.826 18.03 0.00 33.56 2.78
2572 3867 1.247567 CCCACAATGTGTTCCTCCAC 58.752 55.000 12.79 0.00 35.86 4.02
2713 4008 2.080116 TTGTCACGACGGTTTTCGCG 62.080 55.000 0.00 0.00 43.06 5.87
2902 4197 6.129179 ACAGTTTATAATGGATGGGTTCCTG 58.871 40.000 0.00 0.00 45.68 3.86
2920 4215 2.064762 CTGAACTGGCGACTGAAGAAG 58.935 52.381 0.54 0.00 0.00 2.85
3010 4305 1.416813 CGTCTGAATCTGCGCTGGAC 61.417 60.000 14.70 11.65 0.00 4.02
3076 4371 1.032794 TCTCGCTCATACCGCTGATT 58.967 50.000 0.00 0.00 0.00 2.57
3145 4440 4.431416 AACAACACAGGTGAGTAATGGA 57.569 40.909 6.40 0.00 0.00 3.41
3147 4442 4.326826 ACAACACAGGTGAGTAATGGATG 58.673 43.478 6.40 0.00 0.00 3.51
3148 4443 3.634397 ACACAGGTGAGTAATGGATGG 57.366 47.619 6.40 0.00 0.00 3.51
3149 4444 2.912956 ACACAGGTGAGTAATGGATGGT 59.087 45.455 6.40 0.00 0.00 3.55
3174 4688 4.340381 GCTGATGCTGAAATCCAATAGGTT 59.660 41.667 0.00 0.00 34.41 3.50
3186 4700 8.706322 AAATCCAATAGGTTCTAGTTGTGTTT 57.294 30.769 0.00 0.00 35.89 2.83
3568 5292 8.293867 GCTTAATAGCATAGTATAGAGGATCCG 58.706 40.741 5.98 0.00 46.95 4.18
3569 5293 9.562408 CTTAATAGCATAGTATAGAGGATCCGA 57.438 37.037 5.98 0.00 33.66 4.55
3570 5294 9.562408 TTAATAGCATAGTATAGAGGATCCGAG 57.438 37.037 5.98 0.00 33.66 4.63
3577 5301 0.551396 TAGAGGATCCGAGCTGGTGA 59.449 55.000 5.98 0.00 39.52 4.02
3597 5325 1.421646 AGCATTGGGGGTATAGTCAGC 59.578 52.381 0.00 0.00 0.00 4.26
3619 5347 4.261783 GCATACAAGAGTCAGATCCGATCA 60.262 45.833 11.01 0.00 0.00 2.92
3676 5404 1.816074 TTAAGGATGGCGCGTTCTTT 58.184 45.000 8.43 9.83 0.00 2.52
3677 5405 1.083489 TAAGGATGGCGCGTTCTTTG 58.917 50.000 8.43 0.00 0.00 2.77
3719 5447 2.611473 CCCACTATCGAGATGGACATGC 60.611 54.545 12.70 0.00 35.33 4.06
3761 5489 2.869801 TGTAGTTTGTTCTGCGACTTGG 59.130 45.455 0.00 0.00 0.00 3.61
3763 5491 0.657368 GTTTGTTCTGCGACTTGGCG 60.657 55.000 0.00 0.00 35.06 5.69
3811 5539 0.957362 GCAAGGCATTCTATCTGGCC 59.043 55.000 0.00 0.00 46.77 5.36
3828 5556 0.525668 GCCGTGTAGACTGATCACCG 60.526 60.000 0.00 0.00 0.00 4.94
3934 5666 7.830201 TGTTTAGGACTTTAGGTTCAGTTTGAA 59.170 33.333 0.00 0.00 33.32 2.69
3935 5667 8.847196 GTTTAGGACTTTAGGTTCAGTTTGAAT 58.153 33.333 0.00 0.00 38.79 2.57
3969 5701 0.969894 AGGACTTCAGGTCAGGAACG 59.030 55.000 0.00 0.00 46.16 3.95
3989 5721 3.942748 ACGTGTGTTAACATTTGTGGTCT 59.057 39.130 12.26 0.00 38.92 3.85
4005 5737 3.674753 GTGGTCTGTATTTTGTGCAATGC 59.325 43.478 0.00 0.00 0.00 3.56
4020 5752 5.150683 GTGCAATGCGTGATACAAAACTTA 58.849 37.500 0.00 0.00 0.00 2.24
4048 5780 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
4064 5796 9.915629 AATATAAGAGCGTTTAGATCACTAAGG 57.084 33.333 0.00 0.00 39.36 2.69
4065 5797 4.048241 AGAGCGTTTAGATCACTAAGGC 57.952 45.455 0.00 3.49 39.36 4.35
4066 5798 3.124560 GAGCGTTTAGATCACTAAGGCC 58.875 50.000 0.00 0.00 39.36 5.19
4067 5799 2.766828 AGCGTTTAGATCACTAAGGCCT 59.233 45.455 0.00 0.00 39.36 5.19
4068 5800 3.197983 AGCGTTTAGATCACTAAGGCCTT 59.802 43.478 24.18 24.18 39.36 4.35
4069 5801 3.309954 GCGTTTAGATCACTAAGGCCTTG 59.690 47.826 28.77 19.17 39.36 3.61
4071 5803 5.657474 CGTTTAGATCACTAAGGCCTTGTA 58.343 41.667 28.77 8.15 39.36 2.41
4072 5804 5.519206 CGTTTAGATCACTAAGGCCTTGTAC 59.481 44.000 28.77 14.25 39.36 2.90
4073 5805 6.403878 GTTTAGATCACTAAGGCCTTGTACA 58.596 40.000 28.77 6.91 39.36 2.90
4074 5806 6.614694 TTAGATCACTAAGGCCTTGTACAA 57.385 37.500 28.77 8.28 34.21 2.41
4076 5808 5.431765 AGATCACTAAGGCCTTGTACAATG 58.568 41.667 28.77 15.46 0.00 2.82
4077 5809 3.950397 TCACTAAGGCCTTGTACAATGG 58.050 45.455 28.77 13.26 0.00 3.16
4078 5810 3.585289 TCACTAAGGCCTTGTACAATGGA 59.415 43.478 28.77 12.41 0.00 3.41
4080 5812 4.396166 CACTAAGGCCTTGTACAATGGAAG 59.604 45.833 28.77 15.03 0.00 3.46
4081 5813 3.806949 AAGGCCTTGTACAATGGAAGA 57.193 42.857 19.73 0.00 0.00 2.87
4083 5815 3.624777 AGGCCTTGTACAATGGAAGATG 58.375 45.455 21.28 4.72 0.00 2.90
4084 5816 2.099756 GGCCTTGTACAATGGAAGATGC 59.900 50.000 21.28 10.00 0.00 3.91
4085 5817 3.019564 GCCTTGTACAATGGAAGATGCT 58.980 45.455 21.28 0.00 0.00 3.79
4087 5819 4.640201 GCCTTGTACAATGGAAGATGCTTA 59.360 41.667 21.28 0.00 0.00 3.09
4088 5820 5.220931 GCCTTGTACAATGGAAGATGCTTAG 60.221 44.000 21.28 2.32 0.00 2.18
4089 5821 6.115446 CCTTGTACAATGGAAGATGCTTAGA 58.885 40.000 9.13 0.00 0.00 2.10
4090 5822 6.259608 CCTTGTACAATGGAAGATGCTTAGAG 59.740 42.308 9.13 0.00 0.00 2.43
4092 5824 6.577103 TGTACAATGGAAGATGCTTAGAGAG 58.423 40.000 0.00 0.00 0.00 3.20
4094 5826 4.472833 ACAATGGAAGATGCTTAGAGAGGT 59.527 41.667 0.00 0.00 0.00 3.85
4095 5827 4.686191 ATGGAAGATGCTTAGAGAGGTG 57.314 45.455 0.00 0.00 0.00 4.00
4096 5828 2.169352 TGGAAGATGCTTAGAGAGGTGC 59.831 50.000 0.00 0.00 0.00 5.01
4097 5829 2.433970 GGAAGATGCTTAGAGAGGTGCT 59.566 50.000 0.00 0.00 0.00 4.40
4098 5830 3.118445 GGAAGATGCTTAGAGAGGTGCTT 60.118 47.826 0.00 0.00 0.00 3.91
4099 5831 4.100189 GGAAGATGCTTAGAGAGGTGCTTA 59.900 45.833 0.00 0.00 0.00 3.09
4100 5832 4.935352 AGATGCTTAGAGAGGTGCTTAG 57.065 45.455 0.00 0.00 0.00 2.18
4101 5833 4.541705 AGATGCTTAGAGAGGTGCTTAGA 58.458 43.478 0.00 0.00 0.00 2.10
4102 5834 4.959210 AGATGCTTAGAGAGGTGCTTAGAA 59.041 41.667 0.00 0.00 0.00 2.10
4103 5835 5.423610 AGATGCTTAGAGAGGTGCTTAGAAA 59.576 40.000 0.00 0.00 0.00 2.52
4104 5836 5.483685 TGCTTAGAGAGGTGCTTAGAAAA 57.516 39.130 0.00 0.00 0.00 2.29
4105 5837 5.865085 TGCTTAGAGAGGTGCTTAGAAAAA 58.135 37.500 0.00 0.00 0.00 1.94
4106 5838 6.476378 TGCTTAGAGAGGTGCTTAGAAAAAT 58.524 36.000 0.00 0.00 0.00 1.82
4107 5839 7.620880 TGCTTAGAGAGGTGCTTAGAAAAATA 58.379 34.615 0.00 0.00 0.00 1.40
4108 5840 8.100791 TGCTTAGAGAGGTGCTTAGAAAAATAA 58.899 33.333 0.00 0.00 0.00 1.40
4109 5841 8.947115 GCTTAGAGAGGTGCTTAGAAAAATAAA 58.053 33.333 0.00 0.00 0.00 1.40
4111 5843 7.689446 AGAGAGGTGCTTAGAAAAATAAACC 57.311 36.000 0.00 0.00 0.00 3.27
4112 5844 6.371825 AGAGAGGTGCTTAGAAAAATAAACCG 59.628 38.462 0.00 0.00 0.00 4.44
4113 5845 6.235664 AGAGGTGCTTAGAAAAATAAACCGA 58.764 36.000 0.00 0.00 0.00 4.69
4114 5846 6.371825 AGAGGTGCTTAGAAAAATAAACCGAG 59.628 38.462 0.00 0.00 0.00 4.63
4115 5847 6.235664 AGGTGCTTAGAAAAATAAACCGAGA 58.764 36.000 0.00 0.00 0.00 4.04
4116 5848 6.884836 AGGTGCTTAGAAAAATAAACCGAGAT 59.115 34.615 0.00 0.00 0.00 2.75
4117 5849 7.393515 AGGTGCTTAGAAAAATAAACCGAGATT 59.606 33.333 0.00 0.00 0.00 2.40
4118 5850 8.027189 GGTGCTTAGAAAAATAAACCGAGATTT 58.973 33.333 0.00 0.00 0.00 2.17
4119 5851 9.406828 GTGCTTAGAAAAATAAACCGAGATTTT 57.593 29.630 0.00 0.00 36.94 1.82
4120 5852 9.620660 TGCTTAGAAAAATAAACCGAGATTTTC 57.379 29.630 0.00 0.00 39.23 2.29
4121 5853 9.841880 GCTTAGAAAAATAAACCGAGATTTTCT 57.158 29.630 14.07 14.07 46.39 2.52
4125 5857 9.899226 AGAAAAATAAACCGAGATTTTCTGAAG 57.101 29.630 10.10 0.00 44.34 3.02
4126 5858 8.520835 AAAAATAAACCGAGATTTTCTGAAGC 57.479 30.769 0.00 0.00 34.86 3.86
4127 5859 6.817765 AATAAACCGAGATTTTCTGAAGCA 57.182 33.333 0.00 0.00 0.00 3.91
4128 5860 4.489679 AAACCGAGATTTTCTGAAGCAC 57.510 40.909 0.00 0.00 0.00 4.40
4129 5861 2.427506 ACCGAGATTTTCTGAAGCACC 58.572 47.619 0.00 0.00 0.00 5.01
4130 5862 1.394917 CCGAGATTTTCTGAAGCACCG 59.605 52.381 0.00 0.00 0.00 4.94
4131 5863 1.394917 CGAGATTTTCTGAAGCACCGG 59.605 52.381 0.00 0.00 0.00 5.28
4132 5864 2.427506 GAGATTTTCTGAAGCACCGGT 58.572 47.619 0.00 0.00 0.00 5.28
4133 5865 2.154462 AGATTTTCTGAAGCACCGGTG 58.846 47.619 30.66 30.66 0.00 4.94
4145 5877 2.684001 CACCGGTGCCTATTTCTACA 57.316 50.000 24.02 0.00 0.00 2.74
4146 5878 2.550978 CACCGGTGCCTATTTCTACAG 58.449 52.381 24.02 0.00 0.00 2.74
4147 5879 1.485066 ACCGGTGCCTATTTCTACAGG 59.515 52.381 6.12 0.00 35.04 4.00
4148 5880 1.760613 CCGGTGCCTATTTCTACAGGA 59.239 52.381 0.00 0.00 33.42 3.86
4149 5881 2.224066 CCGGTGCCTATTTCTACAGGAG 60.224 54.545 0.00 0.00 33.42 3.69
4150 5882 2.693591 CGGTGCCTATTTCTACAGGAGA 59.306 50.000 0.00 0.00 33.42 3.71
4151 5883 3.243569 CGGTGCCTATTTCTACAGGAGAG 60.244 52.174 0.00 0.00 34.93 3.20
4152 5884 3.961408 GGTGCCTATTTCTACAGGAGAGA 59.039 47.826 0.00 0.00 34.93 3.10
4153 5885 4.202172 GGTGCCTATTTCTACAGGAGAGAC 60.202 50.000 0.00 0.00 34.93 3.36
4154 5886 3.632604 TGCCTATTTCTACAGGAGAGACG 59.367 47.826 0.00 0.00 34.93 4.18
4155 5887 3.551250 GCCTATTTCTACAGGAGAGACGC 60.551 52.174 0.00 0.00 34.93 5.19
4156 5888 3.886505 CCTATTTCTACAGGAGAGACGCT 59.113 47.826 0.00 0.00 34.93 5.07
4157 5889 4.339814 CCTATTTCTACAGGAGAGACGCTT 59.660 45.833 0.00 0.00 34.93 4.68
4158 5890 5.531659 CCTATTTCTACAGGAGAGACGCTTA 59.468 44.000 0.00 0.00 34.93 3.09
4159 5891 4.966965 TTTCTACAGGAGAGACGCTTAG 57.033 45.455 0.00 0.00 34.93 2.18
4160 5892 3.630892 TCTACAGGAGAGACGCTTAGT 57.369 47.619 0.00 0.00 0.00 2.24
4161 5893 3.952931 TCTACAGGAGAGACGCTTAGTT 58.047 45.455 0.00 0.00 0.00 2.24
4162 5894 5.095145 TCTACAGGAGAGACGCTTAGTTA 57.905 43.478 0.00 0.00 0.00 2.24
4163 5895 5.494724 TCTACAGGAGAGACGCTTAGTTAA 58.505 41.667 0.00 0.00 0.00 2.01
4164 5896 4.705337 ACAGGAGAGACGCTTAGTTAAG 57.295 45.455 0.00 0.00 36.40 1.85
4165 5897 9.223557 TTCTACAGGAGAGACGCTTAGTTAAGC 62.224 44.444 12.72 12.72 44.08 3.09
4179 5911 7.108841 CTTAGTTAAGCATCTACCCTGTACA 57.891 40.000 0.00 0.00 0.00 2.90
4180 5912 7.484993 TTAGTTAAGCATCTACCCTGTACAA 57.515 36.000 0.00 0.00 0.00 2.41
4181 5913 6.368779 AGTTAAGCATCTACCCTGTACAAA 57.631 37.500 0.00 0.00 0.00 2.83
4182 5914 6.958767 AGTTAAGCATCTACCCTGTACAAAT 58.041 36.000 0.00 0.00 0.00 2.32
4183 5915 8.086143 AGTTAAGCATCTACCCTGTACAAATA 57.914 34.615 0.00 0.00 0.00 1.40
4184 5916 8.545472 AGTTAAGCATCTACCCTGTACAAATAA 58.455 33.333 0.00 0.00 0.00 1.40
4185 5917 8.827677 GTTAAGCATCTACCCTGTACAAATAAG 58.172 37.037 0.00 0.00 0.00 1.73
4186 5918 5.368989 AGCATCTACCCTGTACAAATAAGC 58.631 41.667 0.00 0.00 0.00 3.09
4187 5919 5.104527 AGCATCTACCCTGTACAAATAAGCA 60.105 40.000 0.00 0.00 0.00 3.91
4188 5920 5.007724 GCATCTACCCTGTACAAATAAGCAC 59.992 44.000 0.00 0.00 0.00 4.40
4189 5921 5.093849 TCTACCCTGTACAAATAAGCACC 57.906 43.478 0.00 0.00 0.00 5.01
4190 5922 2.706890 ACCCTGTACAAATAAGCACCG 58.293 47.619 0.00 0.00 0.00 4.94
4191 5923 2.014128 CCCTGTACAAATAAGCACCGG 58.986 52.381 0.00 0.00 0.00 5.28
4192 5924 2.617021 CCCTGTACAAATAAGCACCGGT 60.617 50.000 0.00 0.00 0.00 5.28
4193 5925 2.418628 CCTGTACAAATAAGCACCGGTG 59.581 50.000 30.66 30.66 0.00 4.94
4206 5938 3.537793 CACCGGTGCTTAAGAAAAGTC 57.462 47.619 24.02 0.00 0.00 3.01
4207 5939 3.139077 CACCGGTGCTTAAGAAAAGTCT 58.861 45.455 24.02 0.00 34.72 3.24
4208 5940 3.058914 CACCGGTGCTTAAGAAAAGTCTG 60.059 47.826 24.02 0.00 33.05 3.51
4209 5941 2.484264 CCGGTGCTTAAGAAAAGTCTGG 59.516 50.000 6.67 0.00 33.05 3.86
4210 5942 3.139077 CGGTGCTTAAGAAAAGTCTGGT 58.861 45.455 6.67 0.00 33.05 4.00
4211 5943 3.564225 CGGTGCTTAAGAAAAGTCTGGTT 59.436 43.478 6.67 0.00 33.05 3.67
4212 5944 4.036380 CGGTGCTTAAGAAAAGTCTGGTTT 59.964 41.667 6.67 0.00 33.05 3.27
4213 5945 5.237779 CGGTGCTTAAGAAAAGTCTGGTTTA 59.762 40.000 6.67 0.00 33.05 2.01
4214 5946 6.072673 CGGTGCTTAAGAAAAGTCTGGTTTAT 60.073 38.462 6.67 0.00 33.05 1.40
4215 5947 7.521585 CGGTGCTTAAGAAAAGTCTGGTTTATT 60.522 37.037 6.67 0.00 33.05 1.40
4216 5948 8.141909 GGTGCTTAAGAAAAGTCTGGTTTATTT 58.858 33.333 6.67 0.00 33.05 1.40
4217 5949 9.181805 GTGCTTAAGAAAAGTCTGGTTTATTTC 57.818 33.333 6.67 0.00 33.05 2.17
4218 5950 9.131791 TGCTTAAGAAAAGTCTGGTTTATTTCT 57.868 29.630 6.67 0.00 40.90 2.52
4219 5951 9.613957 GCTTAAGAAAAGTCTGGTTTATTTCTC 57.386 33.333 6.67 0.00 38.89 2.87
4224 5956 9.004717 AGAAAAGTCTGGTTTATTTCTCTAAGC 57.995 33.333 0.00 0.00 35.96 3.09
4225 5957 8.691661 AAAAGTCTGGTTTATTTCTCTAAGCA 57.308 30.769 0.00 0.00 0.00 3.91
4226 5958 7.674471 AAGTCTGGTTTATTTCTCTAAGCAC 57.326 36.000 0.00 0.00 0.00 4.40
4227 5959 6.174049 AGTCTGGTTTATTTCTCTAAGCACC 58.826 40.000 0.00 0.00 0.00 5.01
4228 5960 6.013293 AGTCTGGTTTATTTCTCTAAGCACCT 60.013 38.462 0.00 0.00 0.00 4.00
4229 5961 6.314152 GTCTGGTTTATTTCTCTAAGCACCTC 59.686 42.308 0.00 0.00 0.00 3.85
4230 5962 5.497474 TGGTTTATTTCTCTAAGCACCTCC 58.503 41.667 0.00 0.00 0.00 4.30
4231 5963 4.882427 GGTTTATTTCTCTAAGCACCTCCC 59.118 45.833 0.00 0.00 0.00 4.30
4232 5964 4.772886 TTATTTCTCTAAGCACCTCCCC 57.227 45.455 0.00 0.00 0.00 4.81
4233 5965 2.344093 TTTCTCTAAGCACCTCCCCT 57.656 50.000 0.00 0.00 0.00 4.79
4234 5966 3.484953 TTTCTCTAAGCACCTCCCCTA 57.515 47.619 0.00 0.00 0.00 3.53
4235 5967 3.484953 TTCTCTAAGCACCTCCCCTAA 57.515 47.619 0.00 0.00 0.00 2.69
4236 5968 3.033659 TCTCTAAGCACCTCCCCTAAG 57.966 52.381 0.00 0.00 0.00 2.18
4237 5969 1.414550 CTCTAAGCACCTCCCCTAAGC 59.585 57.143 0.00 0.00 0.00 3.09
4238 5970 1.204146 CTAAGCACCTCCCCTAAGCA 58.796 55.000 0.00 0.00 0.00 3.91
4239 5971 1.771255 CTAAGCACCTCCCCTAAGCAT 59.229 52.381 0.00 0.00 0.00 3.79
4240 5972 1.002857 AAGCACCTCCCCTAAGCATT 58.997 50.000 0.00 0.00 0.00 3.56
4241 5973 1.002857 AGCACCTCCCCTAAGCATTT 58.997 50.000 0.00 0.00 0.00 2.32
4242 5974 1.359130 AGCACCTCCCCTAAGCATTTT 59.641 47.619 0.00 0.00 0.00 1.82
4243 5975 1.751351 GCACCTCCCCTAAGCATTTTC 59.249 52.381 0.00 0.00 0.00 2.29
4244 5976 2.379005 CACCTCCCCTAAGCATTTTCC 58.621 52.381 0.00 0.00 0.00 3.13
4245 5977 2.000048 ACCTCCCCTAAGCATTTTCCA 59.000 47.619 0.00 0.00 0.00 3.53
4246 5978 2.587307 ACCTCCCCTAAGCATTTTCCAT 59.413 45.455 0.00 0.00 0.00 3.41
4247 5979 3.012844 ACCTCCCCTAAGCATTTTCCATT 59.987 43.478 0.00 0.00 0.00 3.16
4248 5980 3.385755 CCTCCCCTAAGCATTTTCCATTG 59.614 47.826 0.00 0.00 0.00 2.82
4249 5981 4.026052 CTCCCCTAAGCATTTTCCATTGT 58.974 43.478 0.00 0.00 0.00 2.71
4250 5982 5.199982 TCCCCTAAGCATTTTCCATTGTA 57.800 39.130 0.00 0.00 0.00 2.41
4251 5983 4.953579 TCCCCTAAGCATTTTCCATTGTAC 59.046 41.667 0.00 0.00 0.00 2.90
4252 5984 4.709397 CCCCTAAGCATTTTCCATTGTACA 59.291 41.667 0.00 0.00 0.00 2.90
4253 5985 5.186797 CCCCTAAGCATTTTCCATTGTACAA 59.813 40.000 11.41 11.41 0.00 2.41
4254 5986 6.332630 CCCTAAGCATTTTCCATTGTACAAG 58.667 40.000 14.65 6.30 0.00 3.16
4255 5987 6.332630 CCTAAGCATTTTCCATTGTACAAGG 58.667 40.000 14.65 13.92 0.00 3.61
4256 5988 4.192429 AGCATTTTCCATTGTACAAGGC 57.808 40.909 14.66 2.38 0.00 4.35
4257 5989 3.055891 AGCATTTTCCATTGTACAAGGCC 60.056 43.478 14.66 0.00 0.00 5.19
4258 5990 3.055891 GCATTTTCCATTGTACAAGGCCT 60.056 43.478 14.66 0.00 0.00 5.19
4259 5991 4.159506 GCATTTTCCATTGTACAAGGCCTA 59.840 41.667 14.66 0.00 0.00 3.93
4260 5992 5.337169 GCATTTTCCATTGTACAAGGCCTAA 60.337 40.000 14.66 7.91 0.00 2.69
4261 5993 5.975693 TTTTCCATTGTACAAGGCCTAAG 57.024 39.130 14.66 4.24 0.00 2.18
4262 5994 3.644966 TCCATTGTACAAGGCCTAAGG 57.355 47.619 14.66 0.60 0.00 2.69
4263 5995 2.916934 TCCATTGTACAAGGCCTAAGGT 59.083 45.455 14.66 7.88 0.00 3.50
4264 5996 3.016736 CCATTGTACAAGGCCTAAGGTG 58.983 50.000 14.66 2.28 0.00 4.00
4271 6003 3.089284 ACAAGGCCTAAGGTGTAAATGC 58.911 45.455 5.16 0.00 0.00 3.56
4293 6025 9.566432 AATGCTCTTATATTTCTTTACAGAGGG 57.434 33.333 0.00 0.00 0.00 4.30
4304 6036 8.431910 TTTCTTTACAGAGGGAGTATGTTACT 57.568 34.615 0.00 0.00 42.86 2.24
4318 6050 9.771915 GGAGTATGTTACTTTATATACGAGAGC 57.228 37.037 0.00 0.00 39.59 4.09
4351 6083 8.866970 TTTATTTGAAGGGAATTTACCGTAGT 57.133 30.769 0.00 0.00 0.00 2.73
4352 6084 8.866970 TTATTTGAAGGGAATTTACCGTAGTT 57.133 30.769 0.00 0.00 0.00 2.24
4353 6085 9.956640 TTATTTGAAGGGAATTTACCGTAGTTA 57.043 29.630 0.00 0.00 0.00 2.24
4354 6086 7.910441 TTTGAAGGGAATTTACCGTAGTTAG 57.090 36.000 0.00 0.00 0.00 2.34
4355 6087 6.610075 TGAAGGGAATTTACCGTAGTTAGT 57.390 37.500 0.00 0.00 0.00 2.24
4356 6088 6.400568 TGAAGGGAATTTACCGTAGTTAGTG 58.599 40.000 0.00 0.00 0.00 2.74
4357 6089 6.211184 TGAAGGGAATTTACCGTAGTTAGTGA 59.789 38.462 0.00 0.00 0.00 3.41
4365 6098 3.572584 ACCGTAGTTAGTGAAGAAAGCG 58.427 45.455 0.00 0.00 0.00 4.68
4373 6106 7.492352 AGTTAGTGAAGAAAGCGTATGTTTT 57.508 32.000 0.00 0.00 0.00 2.43
4379 6112 6.470877 GTGAAGAAAGCGTATGTTTTTGTCAA 59.529 34.615 10.39 0.00 29.67 3.18
4382 6115 6.149633 AGAAAGCGTATGTTTTTGTCAATCC 58.850 36.000 0.00 0.00 0.00 3.01
4383 6116 4.078363 AGCGTATGTTTTTGTCAATCCG 57.922 40.909 0.00 0.00 0.00 4.18
4400 6133 2.040939 TCCGTTGACCAAGACAACCTA 58.959 47.619 0.00 0.00 42.87 3.08
4401 6134 2.036733 TCCGTTGACCAAGACAACCTAG 59.963 50.000 0.00 0.00 42.87 3.02
4402 6135 2.224209 CCGTTGACCAAGACAACCTAGT 60.224 50.000 0.00 0.00 42.87 2.57
4403 6136 2.800544 CGTTGACCAAGACAACCTAGTG 59.199 50.000 0.00 0.00 42.87 2.74
4406 6139 0.034896 ACCAAGACAACCTAGTGCCG 59.965 55.000 0.00 0.00 0.00 5.69
4421 6154 1.750778 GTGCCGGGAATGTTGATGAAT 59.249 47.619 2.18 0.00 0.00 2.57
4429 6162 5.392919 CGGGAATGTTGATGAATAACAAGCA 60.393 40.000 0.00 0.00 40.95 3.91
4433 6166 7.009815 GGAATGTTGATGAATAACAAGCATGTG 59.990 37.037 0.00 0.00 40.95 3.21
4448 6181 0.254178 ATGTGTGATCCCTGCAGACC 59.746 55.000 17.39 1.38 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
175 181 0.826715 CTCCATCGCCTTCTCCTTGA 59.173 55.000 0.00 0.00 0.00 3.02
277 283 3.584250 GAGCCGTCAACGTCGTCGA 62.584 63.158 9.47 0.00 40.62 4.20
286 307 1.511305 GATCGTGAGGAGCCGTCAA 59.489 57.895 0.15 0.00 0.00 3.18
294 315 0.684479 CTGGTGGAGGATCGTGAGGA 60.684 60.000 0.00 0.00 34.37 3.71
295 316 1.819229 CTGGTGGAGGATCGTGAGG 59.181 63.158 0.00 0.00 34.37 3.86
369 410 2.496899 AACAAAGCGATCTCCACCAT 57.503 45.000 0.00 0.00 0.00 3.55
375 416 9.943465 GAAAATAAATTGAAACAAAGCGATCTC 57.057 29.630 0.00 0.00 0.00 2.75
439 489 1.746220 TGTTCAAACGACCACCAAAGG 59.254 47.619 0.00 0.00 0.00 3.11
510 566 5.302360 TCCCATATTAAACCATGCTACGTC 58.698 41.667 0.00 0.00 0.00 4.34
530 600 5.011982 TCATATCCGATCCCCTATATCCC 57.988 47.826 0.00 0.00 0.00 3.85
566 636 0.605589 CTCCTCAAACAGCCTCGTCT 59.394 55.000 0.00 0.00 0.00 4.18
576 646 2.359975 CCCGGGCACTCCTCAAAC 60.360 66.667 8.08 0.00 0.00 2.93
613 718 0.031857 CATCTACAGCCGCAGAGGAG 59.968 60.000 0.00 0.00 45.00 3.69
638 743 1.318576 GGCGGGTTAGGATTGGATTG 58.681 55.000 0.00 0.00 0.00 2.67
655 760 0.830648 TACATGCAGTCCTACCTGGC 59.169 55.000 0.00 0.00 35.26 4.85
657 762 2.939103 GCTTTACATGCAGTCCTACCTG 59.061 50.000 0.00 0.00 35.49 4.00
658 763 2.571653 TGCTTTACATGCAGTCCTACCT 59.428 45.455 0.00 0.00 35.31 3.08
660 765 3.600388 AGTGCTTTACATGCAGTCCTAC 58.400 45.455 0.00 0.00 39.61 3.18
671 776 8.208718 AGCGATCATAATTTAAGTGCTTTACA 57.791 30.769 0.00 0.00 0.00 2.41
688 793 1.575244 CGTGTGGAATGAGCGATCAT 58.425 50.000 11.05 11.05 0.00 2.45
724 829 3.047280 GGGTGTTCGATGCACGCA 61.047 61.111 23.16 0.00 45.34 5.24
834 953 2.666098 CCCCGGAAATCCACGAGGT 61.666 63.158 0.73 0.00 35.89 3.85
869 988 3.126001 TGATCCTCGTTGCTCAAAAGT 57.874 42.857 0.00 0.00 0.00 2.66
870 989 5.277683 CCATATGATCCTCGTTGCTCAAAAG 60.278 44.000 3.65 0.00 0.00 2.27
871 990 4.576053 CCATATGATCCTCGTTGCTCAAAA 59.424 41.667 3.65 0.00 0.00 2.44
872 991 4.129380 CCATATGATCCTCGTTGCTCAAA 58.871 43.478 3.65 0.00 0.00 2.69
873 992 3.134623 ACCATATGATCCTCGTTGCTCAA 59.865 43.478 3.65 0.00 0.00 3.02
874 993 2.700371 ACCATATGATCCTCGTTGCTCA 59.300 45.455 3.65 0.00 0.00 4.26
875 994 3.393089 ACCATATGATCCTCGTTGCTC 57.607 47.619 3.65 0.00 0.00 4.26
876 995 3.845781 AACCATATGATCCTCGTTGCT 57.154 42.857 3.65 0.00 0.00 3.91
920 1043 1.342672 GGATGTTTCGGGGGCTCCTA 61.343 60.000 0.52 0.00 0.00 2.94
1673 1806 9.558396 AGGTCATCTCAAGAATATCTCAAAATC 57.442 33.333 0.00 0.00 0.00 2.17
1675 1808 7.989741 GGAGGTCATCTCAAGAATATCTCAAAA 59.010 37.037 0.00 0.00 44.19 2.44
1678 1811 5.541868 GGGAGGTCATCTCAAGAATATCTCA 59.458 44.000 0.00 0.00 44.19 3.27
1679 1812 5.541868 TGGGAGGTCATCTCAAGAATATCTC 59.458 44.000 0.00 0.00 44.19 2.75
1681 1814 5.541868 TCTGGGAGGTCATCTCAAGAATATC 59.458 44.000 0.00 0.00 44.19 1.63
1682 1815 5.471424 TCTGGGAGGTCATCTCAAGAATAT 58.529 41.667 0.00 0.00 44.19 1.28
1683 1816 4.883759 TCTGGGAGGTCATCTCAAGAATA 58.116 43.478 0.00 0.00 44.19 1.75
1684 1817 3.729108 TCTGGGAGGTCATCTCAAGAAT 58.271 45.455 0.00 0.00 44.19 2.40
1685 1818 3.190383 TCTGGGAGGTCATCTCAAGAA 57.810 47.619 0.00 0.00 44.19 2.52
1686 1819 2.928036 TCTGGGAGGTCATCTCAAGA 57.072 50.000 0.00 0.00 44.19 3.02
1687 1820 3.988976 TTTCTGGGAGGTCATCTCAAG 57.011 47.619 0.00 0.00 44.19 3.02
1688 1821 4.080695 CAGATTTCTGGGAGGTCATCTCAA 60.081 45.833 0.00 0.00 38.18 3.02
1689 1822 3.453717 CAGATTTCTGGGAGGTCATCTCA 59.546 47.826 0.00 0.00 39.92 3.27
1690 1823 3.743899 GCAGATTTCTGGGAGGTCATCTC 60.744 52.174 9.49 0.00 43.94 2.75
1691 1824 2.172293 GCAGATTTCTGGGAGGTCATCT 59.828 50.000 9.49 0.00 43.94 2.90
1692 1825 2.570135 GCAGATTTCTGGGAGGTCATC 58.430 52.381 9.49 0.00 43.94 2.92
1693 1826 2.725221 GCAGATTTCTGGGAGGTCAT 57.275 50.000 9.49 0.00 43.94 3.06
1712 1845 5.139435 TCATATAGATTTGGAGTCAGCCG 57.861 43.478 0.00 0.00 0.00 5.52
1717 1850 8.085296 ACGTTCTCATCATATAGATTTGGAGTC 58.915 37.037 0.00 0.00 33.72 3.36
1729 1862 4.060900 GCACATGGACGTTCTCATCATAT 58.939 43.478 0.00 0.00 0.00 1.78
1732 1865 1.276138 AGCACATGGACGTTCTCATCA 59.724 47.619 0.00 0.00 0.00 3.07
1761 1894 2.333389 CGACTCGCTACTGAACACTT 57.667 50.000 0.00 0.00 0.00 3.16
1803 1936 8.589338 ACTGATTCTACACACTGAAACTAATCT 58.411 33.333 0.00 0.00 0.00 2.40
1804 1937 8.764524 ACTGATTCTACACACTGAAACTAATC 57.235 34.615 0.00 0.00 0.00 1.75
1905 2412 7.814107 TGATAAATGTTTTTCCATCTCTGCAAC 59.186 33.333 0.00 0.00 0.00 4.17
1978 2491 2.368875 AGAAATGTTCAGTCCTGGTCGT 59.631 45.455 0.00 0.00 0.00 4.34
2072 2594 6.707440 AACATCATTTCTGTTGTTACACCA 57.293 33.333 1.32 0.00 41.35 4.17
2108 2632 5.116180 TGCATGCAGTAGTTCAGGTAATAC 58.884 41.667 18.46 0.00 0.00 1.89
2130 2658 4.107622 GCTATTTGCAAATACTGGTGCTG 58.892 43.478 24.63 14.75 41.48 4.41
2150 3040 3.354948 TGGTCATCATGTAAGCAAGCT 57.645 42.857 0.00 0.00 0.00 3.74
2182 3072 9.851686 TTCTGCTCATCCAAATAATAACACTAT 57.148 29.630 0.00 0.00 0.00 2.12
2185 3217 7.067494 ACCTTCTGCTCATCCAAATAATAACAC 59.933 37.037 0.00 0.00 0.00 3.32
2186 3218 7.118723 ACCTTCTGCTCATCCAAATAATAACA 58.881 34.615 0.00 0.00 0.00 2.41
2203 3235 2.262423 AGTGGAGTGAAACCTTCTGC 57.738 50.000 0.00 0.00 37.80 4.26
2235 3517 9.836864 AAAGGAAAATAAAGCTGATGAAAAAGT 57.163 25.926 0.00 0.00 0.00 2.66
2257 3540 4.106029 TCCGTAGTTCTCAATCGAAAGG 57.894 45.455 0.00 0.00 0.00 3.11
2263 3546 3.695060 TCCTCACTCCGTAGTTCTCAATC 59.305 47.826 0.00 0.00 31.97 2.67
2309 3592 3.311091 ACCAGGCCATTATTGCAATCAT 58.689 40.909 16.86 7.87 0.00 2.45
2403 3686 8.405531 TGGAATGTGTTAAGAAAAGTGAAGAAG 58.594 33.333 0.00 0.00 0.00 2.85
2432 3722 4.334759 CGTCAGCTGAAGAATGGATCAAAT 59.665 41.667 23.33 0.00 0.00 2.32
2433 3723 3.686241 CGTCAGCTGAAGAATGGATCAAA 59.314 43.478 23.33 0.00 0.00 2.69
2434 3724 3.264947 CGTCAGCTGAAGAATGGATCAA 58.735 45.455 23.33 0.00 0.00 2.57
2436 3726 2.606725 CACGTCAGCTGAAGAATGGATC 59.393 50.000 32.21 10.51 0.00 3.36
2437 3727 2.234661 TCACGTCAGCTGAAGAATGGAT 59.765 45.455 32.21 9.31 0.00 3.41
2438 3728 1.618343 TCACGTCAGCTGAAGAATGGA 59.382 47.619 32.21 20.38 0.00 3.41
2440 3730 3.496130 AGTTTCACGTCAGCTGAAGAATG 59.504 43.478 32.21 21.63 0.00 2.67
2441 3731 3.733337 AGTTTCACGTCAGCTGAAGAAT 58.267 40.909 32.21 11.47 0.00 2.40
2449 3744 4.496183 CGTAGAGATTAGTTTCACGTCAGC 59.504 45.833 0.00 0.00 0.00 4.26
2456 3751 8.038944 ACCTATTTTGCGTAGAGATTAGTTTCA 58.961 33.333 0.00 0.00 0.00 2.69
2461 3756 8.138712 AGAAGACCTATTTTGCGTAGAGATTAG 58.861 37.037 0.00 0.00 0.00 1.73
2713 4008 0.239082 CGGTGCCGTAAAACCCTTTC 59.761 55.000 1.93 0.00 32.44 2.62
2902 4197 1.795286 CACTTCTTCAGTCGCCAGTTC 59.205 52.381 0.00 0.00 30.92 3.01
2920 4215 0.394192 TGATCATCGCCCTCATCCAC 59.606 55.000 0.00 0.00 0.00 4.02
3076 4371 0.034337 GCTCCTTGGACACCAACGTA 59.966 55.000 0.00 0.00 38.75 3.57
3148 4443 7.262691 CCTATTGGATTTCAGCATCAGCGAC 62.263 48.000 0.00 0.00 40.17 5.19
3149 4444 5.277988 CCTATTGGATTTCAGCATCAGCGA 61.278 45.833 0.00 0.00 40.17 4.93
3186 4700 8.172352 TGGCTAAACTGAAAACAGCTAAATAA 57.828 30.769 0.00 0.00 32.78 1.40
3577 5301 1.421646 GCTGACTATACCCCCAATGCT 59.578 52.381 0.00 0.00 0.00 3.79
3586 5310 6.263392 TCTGACTCTTGTATGCTGACTATACC 59.737 42.308 0.00 0.00 31.53 2.73
3597 5325 5.444663 TGATCGGATCTGACTCTTGTATG 57.555 43.478 18.16 0.00 0.00 2.39
3619 5347 9.872684 AATCTACAATGTGATATCCCAAATCTT 57.127 29.630 0.00 0.00 0.00 2.40
3676 5404 5.221581 GGGTAGTTACTGTTCTTCTCAACCA 60.222 44.000 0.00 0.00 0.00 3.67
3677 5405 5.221581 TGGGTAGTTACTGTTCTTCTCAACC 60.222 44.000 0.00 0.00 0.00 3.77
3719 5447 5.806286 ACAGAATTACAAGACACAACAACG 58.194 37.500 0.00 0.00 0.00 4.10
3761 5489 2.278875 GTGTTTCTTTTGCACTGTTCGC 59.721 45.455 0.00 0.00 0.00 4.70
3763 5491 3.859386 CCTGTGTTTCTTTTGCACTGTTC 59.141 43.478 0.00 0.00 34.52 3.18
3811 5539 2.516923 GTTCGGTGATCAGTCTACACG 58.483 52.381 0.00 0.00 35.68 4.49
3828 5556 1.713597 CCGGGTGGTTAACTACGTTC 58.286 55.000 14.99 7.19 0.00 3.95
3948 5680 2.224305 CGTTCCTGACCTGAAGTCCTTT 60.224 50.000 0.00 0.00 45.68 3.11
3969 5701 5.243426 ACAGACCACAAATGTTAACACAC 57.757 39.130 11.22 0.00 35.03 3.82
3989 5721 3.632855 TCACGCATTGCACAAAATACA 57.367 38.095 9.69 0.00 0.00 2.29
4005 5737 7.435488 CAGAGGGAGTATAAGTTTTGTATCACG 59.565 40.741 0.00 0.00 0.00 4.35
4048 5780 4.504858 ACAAGGCCTTAGTGATCTAAACG 58.495 43.478 20.00 3.16 35.98 3.60
4064 5796 3.019564 AGCATCTTCCATTGTACAAGGC 58.980 45.455 14.66 2.38 0.00 4.35
4065 5797 6.115446 TCTAAGCATCTTCCATTGTACAAGG 58.885 40.000 14.65 13.92 0.00 3.61
4066 5798 7.044181 TCTCTAAGCATCTTCCATTGTACAAG 58.956 38.462 14.65 6.30 0.00 3.16
4067 5799 6.946340 TCTCTAAGCATCTTCCATTGTACAA 58.054 36.000 11.41 11.41 0.00 2.41
4068 5800 6.407412 CCTCTCTAAGCATCTTCCATTGTACA 60.407 42.308 0.00 0.00 0.00 2.90
4069 5801 5.988561 CCTCTCTAAGCATCTTCCATTGTAC 59.011 44.000 0.00 0.00 0.00 2.90
4071 5803 4.472833 ACCTCTCTAAGCATCTTCCATTGT 59.527 41.667 0.00 0.00 0.00 2.71
4072 5804 4.815308 CACCTCTCTAAGCATCTTCCATTG 59.185 45.833 0.00 0.00 0.00 2.82
4073 5805 4.685575 GCACCTCTCTAAGCATCTTCCATT 60.686 45.833 0.00 0.00 0.00 3.16
4074 5806 3.181456 GCACCTCTCTAAGCATCTTCCAT 60.181 47.826 0.00 0.00 0.00 3.41
4076 5808 2.433970 AGCACCTCTCTAAGCATCTTCC 59.566 50.000 0.00 0.00 0.00 3.46
4077 5809 3.817709 AGCACCTCTCTAAGCATCTTC 57.182 47.619 0.00 0.00 0.00 2.87
4078 5810 4.959210 TCTAAGCACCTCTCTAAGCATCTT 59.041 41.667 0.00 0.00 0.00 2.40
4080 5812 4.927978 TCTAAGCACCTCTCTAAGCATC 57.072 45.455 0.00 0.00 0.00 3.91
4081 5813 5.683876 TTTCTAAGCACCTCTCTAAGCAT 57.316 39.130 0.00 0.00 0.00 3.79
4083 5815 6.993786 ATTTTTCTAAGCACCTCTCTAAGC 57.006 37.500 0.00 0.00 0.00 3.09
4085 5817 9.227777 GGTTTATTTTTCTAAGCACCTCTCTAA 57.772 33.333 0.00 0.00 0.00 2.10
4087 5819 6.371825 CGGTTTATTTTTCTAAGCACCTCTCT 59.628 38.462 0.00 0.00 0.00 3.10
4088 5820 6.370718 TCGGTTTATTTTTCTAAGCACCTCTC 59.629 38.462 0.00 0.00 0.00 3.20
4089 5821 6.235664 TCGGTTTATTTTTCTAAGCACCTCT 58.764 36.000 0.00 0.00 0.00 3.69
4090 5822 6.370718 TCTCGGTTTATTTTTCTAAGCACCTC 59.629 38.462 0.00 0.00 0.00 3.85
4092 5824 6.490566 TCTCGGTTTATTTTTCTAAGCACC 57.509 37.500 0.00 0.00 0.00 5.01
4094 5826 9.620660 GAAAATCTCGGTTTATTTTTCTAAGCA 57.379 29.630 0.00 0.00 35.87 3.91
4095 5827 9.841880 AGAAAATCTCGGTTTATTTTTCTAAGC 57.158 29.630 7.06 0.00 42.02 3.09
4099 5831 9.899226 CTTCAGAAAATCTCGGTTTATTTTTCT 57.101 29.630 0.00 0.00 43.65 2.52
4100 5832 8.639428 GCTTCAGAAAATCTCGGTTTATTTTTC 58.361 33.333 0.00 0.00 35.87 2.29
4101 5833 8.141268 TGCTTCAGAAAATCTCGGTTTATTTTT 58.859 29.630 0.00 0.00 35.87 1.94
4102 5834 7.595130 GTGCTTCAGAAAATCTCGGTTTATTTT 59.405 33.333 0.00 0.00 37.85 1.82
4103 5835 7.084486 GTGCTTCAGAAAATCTCGGTTTATTT 58.916 34.615 0.00 0.00 0.00 1.40
4104 5836 6.349363 GGTGCTTCAGAAAATCTCGGTTTATT 60.349 38.462 0.00 0.00 0.00 1.40
4105 5837 5.123979 GGTGCTTCAGAAAATCTCGGTTTAT 59.876 40.000 0.00 0.00 0.00 1.40
4106 5838 4.454504 GGTGCTTCAGAAAATCTCGGTTTA 59.545 41.667 0.00 0.00 0.00 2.01
4107 5839 3.253432 GGTGCTTCAGAAAATCTCGGTTT 59.747 43.478 0.00 0.00 0.00 3.27
4108 5840 2.814336 GGTGCTTCAGAAAATCTCGGTT 59.186 45.455 0.00 0.00 0.00 4.44
4109 5841 2.427506 GGTGCTTCAGAAAATCTCGGT 58.572 47.619 0.00 0.00 0.00 4.69
4110 5842 1.394917 CGGTGCTTCAGAAAATCTCGG 59.605 52.381 0.00 0.00 0.00 4.63
4111 5843 1.394917 CCGGTGCTTCAGAAAATCTCG 59.605 52.381 0.00 0.00 0.00 4.04
4112 5844 2.160417 CACCGGTGCTTCAGAAAATCTC 59.840 50.000 24.02 0.00 0.00 2.75
4113 5845 2.154462 CACCGGTGCTTCAGAAAATCT 58.846 47.619 24.02 0.00 0.00 2.40
4114 5846 2.619013 CACCGGTGCTTCAGAAAATC 57.381 50.000 24.02 0.00 0.00 2.17
4126 5858 2.550978 CTGTAGAAATAGGCACCGGTG 58.449 52.381 30.66 30.66 0.00 4.94
4127 5859 1.485066 CCTGTAGAAATAGGCACCGGT 59.515 52.381 0.00 0.00 0.00 5.28
4128 5860 1.760613 TCCTGTAGAAATAGGCACCGG 59.239 52.381 0.00 0.00 34.08 5.28
4129 5861 2.693591 TCTCCTGTAGAAATAGGCACCG 59.306 50.000 0.00 0.00 34.08 4.94
4130 5862 3.961408 TCTCTCCTGTAGAAATAGGCACC 59.039 47.826 0.00 0.00 34.08 5.01
4131 5863 4.498345 CGTCTCTCCTGTAGAAATAGGCAC 60.498 50.000 0.00 0.00 34.08 5.01
4132 5864 3.632604 CGTCTCTCCTGTAGAAATAGGCA 59.367 47.826 0.00 0.00 34.08 4.75
4133 5865 3.551250 GCGTCTCTCCTGTAGAAATAGGC 60.551 52.174 0.00 0.00 34.08 3.93
4134 5866 3.886505 AGCGTCTCTCCTGTAGAAATAGG 59.113 47.826 0.00 0.00 35.36 2.57
4135 5867 5.508200 AAGCGTCTCTCCTGTAGAAATAG 57.492 43.478 0.00 0.00 32.46 1.73
4136 5868 6.120905 ACTAAGCGTCTCTCCTGTAGAAATA 58.879 40.000 0.00 0.00 32.46 1.40
4137 5869 4.951094 ACTAAGCGTCTCTCCTGTAGAAAT 59.049 41.667 0.00 0.00 32.46 2.17
4138 5870 4.333690 ACTAAGCGTCTCTCCTGTAGAAA 58.666 43.478 0.00 0.00 32.46 2.52
4139 5871 3.952931 ACTAAGCGTCTCTCCTGTAGAA 58.047 45.455 0.00 0.00 32.46 2.10
4140 5872 3.630892 ACTAAGCGTCTCTCCTGTAGA 57.369 47.619 0.00 0.00 0.00 2.59
4141 5873 5.812652 CTTAACTAAGCGTCTCTCCTGTAG 58.187 45.833 0.00 0.00 0.00 2.74
4142 5874 5.814764 CTTAACTAAGCGTCTCTCCTGTA 57.185 43.478 0.00 0.00 0.00 2.74
4143 5875 4.705337 CTTAACTAAGCGTCTCTCCTGT 57.295 45.455 0.00 0.00 0.00 4.00
4155 5887 7.108841 TGTACAGGGTAGATGCTTAACTAAG 57.891 40.000 0.00 0.00 36.40 2.18
4156 5888 7.484993 TTGTACAGGGTAGATGCTTAACTAA 57.515 36.000 0.00 0.00 0.00 2.24
4157 5889 7.484993 TTTGTACAGGGTAGATGCTTAACTA 57.515 36.000 0.00 0.00 0.00 2.24
4158 5890 6.368779 TTTGTACAGGGTAGATGCTTAACT 57.631 37.500 0.00 0.00 0.00 2.24
4159 5891 8.726870 TTATTTGTACAGGGTAGATGCTTAAC 57.273 34.615 0.00 0.00 0.00 2.01
4160 5892 7.497909 GCTTATTTGTACAGGGTAGATGCTTAA 59.502 37.037 0.00 0.00 0.00 1.85
4161 5893 6.990349 GCTTATTTGTACAGGGTAGATGCTTA 59.010 38.462 0.00 0.00 0.00 3.09
4162 5894 5.823045 GCTTATTTGTACAGGGTAGATGCTT 59.177 40.000 0.00 0.00 0.00 3.91
4163 5895 5.104527 TGCTTATTTGTACAGGGTAGATGCT 60.105 40.000 0.00 0.00 0.00 3.79
4164 5896 5.007724 GTGCTTATTTGTACAGGGTAGATGC 59.992 44.000 0.00 0.00 0.00 3.91
4165 5897 5.527582 GGTGCTTATTTGTACAGGGTAGATG 59.472 44.000 0.00 0.00 0.00 2.90
4166 5898 5.681639 GGTGCTTATTTGTACAGGGTAGAT 58.318 41.667 0.00 0.00 0.00 1.98
4167 5899 4.382254 CGGTGCTTATTTGTACAGGGTAGA 60.382 45.833 0.00 0.00 0.00 2.59
4168 5900 3.869246 CGGTGCTTATTTGTACAGGGTAG 59.131 47.826 0.00 0.00 0.00 3.18
4169 5901 3.369681 CCGGTGCTTATTTGTACAGGGTA 60.370 47.826 0.00 0.00 35.20 3.69
4170 5902 2.617021 CCGGTGCTTATTTGTACAGGGT 60.617 50.000 0.00 0.00 35.20 4.34
4171 5903 2.014128 CCGGTGCTTATTTGTACAGGG 58.986 52.381 0.00 0.00 35.20 4.45
4172 5904 2.418628 CACCGGTGCTTATTTGTACAGG 59.581 50.000 24.02 0.00 41.71 4.00
4173 5905 3.740044 CACCGGTGCTTATTTGTACAG 57.260 47.619 24.02 0.00 0.00 2.74
4186 5918 3.058914 CAGACTTTTCTTAAGCACCGGTG 60.059 47.826 30.66 30.66 0.00 4.94
4187 5919 3.139077 CAGACTTTTCTTAAGCACCGGT 58.861 45.455 0.00 0.00 0.00 5.28
4188 5920 2.484264 CCAGACTTTTCTTAAGCACCGG 59.516 50.000 0.00 0.00 0.00 5.28
4189 5921 3.139077 ACCAGACTTTTCTTAAGCACCG 58.861 45.455 0.00 0.00 0.00 4.94
4190 5922 5.515797 AAACCAGACTTTTCTTAAGCACC 57.484 39.130 0.00 0.00 0.00 5.01
4191 5923 9.181805 GAAATAAACCAGACTTTTCTTAAGCAC 57.818 33.333 0.00 0.00 0.00 4.40
4192 5924 9.131791 AGAAATAAACCAGACTTTTCTTAAGCA 57.868 29.630 0.00 0.00 33.97 3.91
4193 5925 9.613957 GAGAAATAAACCAGACTTTTCTTAAGC 57.386 33.333 0.00 0.00 36.91 3.09
4198 5930 9.004717 GCTTAGAGAAATAAACCAGACTTTTCT 57.995 33.333 0.00 0.00 38.86 2.52
4199 5931 8.784043 TGCTTAGAGAAATAAACCAGACTTTTC 58.216 33.333 0.00 0.00 0.00 2.29
4200 5932 8.568794 GTGCTTAGAGAAATAAACCAGACTTTT 58.431 33.333 0.00 0.00 0.00 2.27
4201 5933 7.175119 GGTGCTTAGAGAAATAAACCAGACTTT 59.825 37.037 0.00 0.00 0.00 2.66
4202 5934 6.655425 GGTGCTTAGAGAAATAAACCAGACTT 59.345 38.462 0.00 0.00 0.00 3.01
4203 5935 6.013293 AGGTGCTTAGAGAAATAAACCAGACT 60.013 38.462 0.00 0.00 0.00 3.24
4204 5936 6.174049 AGGTGCTTAGAGAAATAAACCAGAC 58.826 40.000 0.00 0.00 0.00 3.51
4205 5937 6.374417 AGGTGCTTAGAGAAATAAACCAGA 57.626 37.500 0.00 0.00 0.00 3.86
4206 5938 5.586643 GGAGGTGCTTAGAGAAATAAACCAG 59.413 44.000 0.00 0.00 0.00 4.00
4207 5939 5.497474 GGAGGTGCTTAGAGAAATAAACCA 58.503 41.667 0.00 0.00 0.00 3.67
4208 5940 4.882427 GGGAGGTGCTTAGAGAAATAAACC 59.118 45.833 0.00 0.00 0.00 3.27
4209 5941 4.882427 GGGGAGGTGCTTAGAGAAATAAAC 59.118 45.833 0.00 0.00 0.00 2.01
4210 5942 4.788617 AGGGGAGGTGCTTAGAGAAATAAA 59.211 41.667 0.00 0.00 0.00 1.40
4211 5943 4.371681 AGGGGAGGTGCTTAGAGAAATAA 58.628 43.478 0.00 0.00 0.00 1.40
4212 5944 4.008916 AGGGGAGGTGCTTAGAGAAATA 57.991 45.455 0.00 0.00 0.00 1.40
4213 5945 2.852130 AGGGGAGGTGCTTAGAGAAAT 58.148 47.619 0.00 0.00 0.00 2.17
4214 5946 2.344093 AGGGGAGGTGCTTAGAGAAA 57.656 50.000 0.00 0.00 0.00 2.52
4215 5947 3.375699 CTTAGGGGAGGTGCTTAGAGAA 58.624 50.000 0.00 0.00 0.00 2.87
4216 5948 2.955461 GCTTAGGGGAGGTGCTTAGAGA 60.955 54.545 0.00 0.00 0.00 3.10
4217 5949 1.414550 GCTTAGGGGAGGTGCTTAGAG 59.585 57.143 0.00 0.00 0.00 2.43
4218 5950 1.273609 TGCTTAGGGGAGGTGCTTAGA 60.274 52.381 0.00 0.00 0.00 2.10
4219 5951 1.204146 TGCTTAGGGGAGGTGCTTAG 58.796 55.000 0.00 0.00 0.00 2.18
4220 5952 1.893315 ATGCTTAGGGGAGGTGCTTA 58.107 50.000 0.00 0.00 0.00 3.09
4221 5953 1.002857 AATGCTTAGGGGAGGTGCTT 58.997 50.000 0.00 0.00 0.00 3.91
4222 5954 1.002857 AAATGCTTAGGGGAGGTGCT 58.997 50.000 0.00 0.00 0.00 4.40
4223 5955 1.751351 GAAAATGCTTAGGGGAGGTGC 59.249 52.381 0.00 0.00 0.00 5.01
4224 5956 2.291540 TGGAAAATGCTTAGGGGAGGTG 60.292 50.000 0.00 0.00 0.00 4.00
4225 5957 2.000048 TGGAAAATGCTTAGGGGAGGT 59.000 47.619 0.00 0.00 0.00 3.85
4226 5958 2.826674 TGGAAAATGCTTAGGGGAGG 57.173 50.000 0.00 0.00 0.00 4.30
4227 5959 4.026052 ACAATGGAAAATGCTTAGGGGAG 58.974 43.478 0.00 0.00 0.00 4.30
4228 5960 4.059773 ACAATGGAAAATGCTTAGGGGA 57.940 40.909 0.00 0.00 0.00 4.81
4229 5961 4.709397 TGTACAATGGAAAATGCTTAGGGG 59.291 41.667 0.00 0.00 0.00 4.79
4230 5962 5.913137 TGTACAATGGAAAATGCTTAGGG 57.087 39.130 0.00 0.00 0.00 3.53
4231 5963 6.332630 CCTTGTACAATGGAAAATGCTTAGG 58.667 40.000 9.13 0.00 0.00 2.69
4232 5964 5.807011 GCCTTGTACAATGGAAAATGCTTAG 59.193 40.000 21.28 2.32 0.00 2.18
4233 5965 5.337169 GGCCTTGTACAATGGAAAATGCTTA 60.337 40.000 21.28 0.00 0.00 3.09
4234 5966 4.563374 GGCCTTGTACAATGGAAAATGCTT 60.563 41.667 21.28 0.00 0.00 3.91
4235 5967 3.055891 GGCCTTGTACAATGGAAAATGCT 60.056 43.478 21.28 0.00 0.00 3.79
4236 5968 3.055891 AGGCCTTGTACAATGGAAAATGC 60.056 43.478 21.28 10.00 0.00 3.56
4237 5969 4.806640 AGGCCTTGTACAATGGAAAATG 57.193 40.909 21.28 4.72 0.00 2.32
4238 5970 5.422012 CCTTAGGCCTTGTACAATGGAAAAT 59.578 40.000 12.58 10.07 0.00 1.82
4239 5971 4.770010 CCTTAGGCCTTGTACAATGGAAAA 59.230 41.667 12.58 12.96 0.00 2.29
4240 5972 4.202631 ACCTTAGGCCTTGTACAATGGAAA 60.203 41.667 12.58 13.20 0.00 3.13
4241 5973 3.332485 ACCTTAGGCCTTGTACAATGGAA 59.668 43.478 12.58 10.37 0.00 3.53
4242 5974 2.916934 ACCTTAGGCCTTGTACAATGGA 59.083 45.455 12.58 4.78 0.00 3.41
4243 5975 3.016736 CACCTTAGGCCTTGTACAATGG 58.983 50.000 12.58 13.26 0.00 3.16
4244 5976 3.686016 ACACCTTAGGCCTTGTACAATG 58.314 45.455 12.58 7.68 0.00 2.82
4245 5977 5.508280 TTACACCTTAGGCCTTGTACAAT 57.492 39.130 12.58 0.00 0.00 2.71
4246 5978 4.978438 TTACACCTTAGGCCTTGTACAA 57.022 40.909 12.58 8.28 0.00 2.41
4247 5979 4.978438 TTTACACCTTAGGCCTTGTACA 57.022 40.909 12.58 3.52 0.00 2.90
4248 5980 4.095932 GCATTTACACCTTAGGCCTTGTAC 59.904 45.833 12.58 0.00 0.00 2.90
4249 5981 4.018779 AGCATTTACACCTTAGGCCTTGTA 60.019 41.667 12.58 11.20 0.00 2.41
4250 5982 3.089284 GCATTTACACCTTAGGCCTTGT 58.911 45.455 12.58 12.43 0.00 3.16
4251 5983 3.356290 AGCATTTACACCTTAGGCCTTG 58.644 45.455 12.58 5.36 0.00 3.61
4252 5984 3.267031 AGAGCATTTACACCTTAGGCCTT 59.733 43.478 12.58 0.00 0.00 4.35
4253 5985 2.846827 AGAGCATTTACACCTTAGGCCT 59.153 45.455 11.78 11.78 0.00 5.19
4254 5986 3.283259 AGAGCATTTACACCTTAGGCC 57.717 47.619 0.00 0.00 0.00 5.19
4255 5987 8.622948 AATATAAGAGCATTTACACCTTAGGC 57.377 34.615 0.00 0.00 0.00 3.93
4325 6057 9.299465 ACTACGGTAAATTCCCTTCAAATAAAA 57.701 29.630 0.00 0.00 0.00 1.52
4327 6059 8.866970 AACTACGGTAAATTCCCTTCAAATAA 57.133 30.769 0.00 0.00 0.00 1.40
4328 6060 9.603921 CTAACTACGGTAAATTCCCTTCAAATA 57.396 33.333 0.00 0.00 0.00 1.40
4329 6061 8.105197 ACTAACTACGGTAAATTCCCTTCAAAT 58.895 33.333 0.00 0.00 0.00 2.32
4330 6062 7.388500 CACTAACTACGGTAAATTCCCTTCAAA 59.612 37.037 0.00 0.00 0.00 2.69
4332 6064 6.211184 TCACTAACTACGGTAAATTCCCTTCA 59.789 38.462 0.00 0.00 0.00 3.02
4333 6065 6.633856 TCACTAACTACGGTAAATTCCCTTC 58.366 40.000 0.00 0.00 0.00 3.46
4335 6067 6.438425 TCTTCACTAACTACGGTAAATTCCCT 59.562 38.462 0.00 0.00 0.00 4.20
4336 6068 6.633856 TCTTCACTAACTACGGTAAATTCCC 58.366 40.000 0.00 0.00 0.00 3.97
4338 6070 8.167345 GCTTTCTTCACTAACTACGGTAAATTC 58.833 37.037 0.00 0.00 0.00 2.17
4343 6075 4.216257 ACGCTTTCTTCACTAACTACGGTA 59.784 41.667 0.00 0.00 0.00 4.02
4344 6076 3.005155 ACGCTTTCTTCACTAACTACGGT 59.995 43.478 0.00 0.00 0.00 4.83
4345 6077 3.572584 ACGCTTTCTTCACTAACTACGG 58.427 45.455 0.00 0.00 0.00 4.02
4347 6079 7.578169 AACATACGCTTTCTTCACTAACTAC 57.422 36.000 0.00 0.00 0.00 2.73
4348 6080 8.597662 AAAACATACGCTTTCTTCACTAACTA 57.402 30.769 0.00 0.00 0.00 2.24
4349 6081 7.492352 AAAACATACGCTTTCTTCACTAACT 57.508 32.000 0.00 0.00 0.00 2.24
4350 6082 7.642586 ACAAAAACATACGCTTTCTTCACTAAC 59.357 33.333 0.00 0.00 0.00 2.34
4351 6083 7.699566 ACAAAAACATACGCTTTCTTCACTAA 58.300 30.769 0.00 0.00 0.00 2.24
4352 6084 7.011576 TGACAAAAACATACGCTTTCTTCACTA 59.988 33.333 0.00 0.00 0.00 2.74
4353 6085 6.131544 ACAAAAACATACGCTTTCTTCACT 57.868 33.333 0.00 0.00 0.00 3.41
4354 6086 5.968848 TGACAAAAACATACGCTTTCTTCAC 59.031 36.000 0.00 0.00 0.00 3.18
4355 6087 6.125327 TGACAAAAACATACGCTTTCTTCA 57.875 33.333 0.00 0.00 0.00 3.02
4356 6088 7.148967 GGATTGACAAAAACATACGCTTTCTTC 60.149 37.037 0.00 0.00 0.00 2.87
4357 6089 6.640907 GGATTGACAAAAACATACGCTTTCTT 59.359 34.615 0.00 0.00 0.00 2.52
4379 6112 1.420138 AGGTTGTCTTGGTCAACGGAT 59.580 47.619 0.00 0.00 43.93 4.18
4382 6115 2.800544 CACTAGGTTGTCTTGGTCAACG 59.199 50.000 0.00 0.00 43.93 4.10
4383 6116 2.548480 GCACTAGGTTGTCTTGGTCAAC 59.452 50.000 0.00 0.00 42.76 3.18
4389 6122 0.673644 CCCGGCACTAGGTTGTCTTG 60.674 60.000 0.00 0.00 0.00 3.02
4400 6133 0.327924 TCATCAACATTCCCGGCACT 59.672 50.000 0.00 0.00 0.00 4.40
4401 6134 1.173043 TTCATCAACATTCCCGGCAC 58.827 50.000 0.00 0.00 0.00 5.01
4402 6135 2.142356 ATTCATCAACATTCCCGGCA 57.858 45.000 0.00 0.00 0.00 5.69
4403 6136 3.380004 TGTTATTCATCAACATTCCCGGC 59.620 43.478 0.00 0.00 31.11 6.13
4406 6139 5.964758 TGCTTGTTATTCATCAACATTCCC 58.035 37.500 0.00 0.00 35.89 3.97
4421 6154 3.346315 CAGGGATCACACATGCTTGTTA 58.654 45.455 1.83 0.00 32.34 2.41
4429 6162 0.254178 GGTCTGCAGGGATCACACAT 59.746 55.000 15.13 0.00 0.00 3.21
4433 6166 2.512515 GCGGTCTGCAGGGATCAC 60.513 66.667 15.13 3.68 45.45 3.06
4448 6181 1.801913 GTCTAGTGTGTCGGCAGCG 60.802 63.158 0.00 0.00 0.00 5.18
4458 6191 2.715763 TGAAAGGGGGAGTCTAGTGT 57.284 50.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.