Multiple sequence alignment - TraesCS4D01G076200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G076200 chr4D 100.000 3887 0 0 1 3887 50772912 50769026 0.000000e+00 7179.0
1 TraesCS4D01G076200 chr4B 91.309 3636 155 72 313 3883 74683849 74680310 0.000000e+00 4815.0
2 TraesCS4D01G076200 chr4B 81.679 262 44 3 1 259 373765912 373765652 8.460000e-52 215.0
3 TraesCS4D01G076200 chr4A 91.237 3629 153 72 313 3879 546209477 546213002 0.000000e+00 4787.0
4 TraesCS4D01G076200 chr5D 83.784 592 88 4 2265 2852 89381395 89381982 4.390000e-154 555.0
5 TraesCS4D01G076200 chr5D 85.393 356 48 4 1803 2156 89380935 89381288 2.210000e-97 366.0
6 TraesCS4D01G076200 chr5D 79.405 437 69 14 993 1414 89379990 89380420 4.910000e-74 289.0
7 TraesCS4D01G076200 chr5B 83.784 592 88 4 2265 2852 94676973 94676386 4.390000e-154 555.0
8 TraesCS4D01G076200 chr5B 84.123 359 53 4 1803 2159 94677444 94677088 1.030000e-90 344.0
9 TraesCS4D01G076200 chr5A 83.585 597 90 6 2260 2852 83277860 83278452 1.580000e-153 553.0
10 TraesCS4D01G076200 chr5A 84.270 356 52 4 1803 2156 83277404 83277757 1.030000e-90 344.0
11 TraesCS4D01G076200 chr5A 79.452 438 67 15 993 1414 83276469 83276899 4.910000e-74 289.0
12 TraesCS4D01G076200 chr5A 81.056 322 56 4 1 317 573596626 573596305 6.450000e-63 252.0
13 TraesCS4D01G076200 chr2D 81.900 442 76 4 2306 2745 136832834 136833273 1.710000e-98 370.0
14 TraesCS4D01G076200 chr2D 76.498 217 36 13 1205 1408 136832035 136832249 1.910000e-18 104.0
15 TraesCS4D01G076200 chr2A 82.028 434 74 4 2309 2740 164704329 164703898 2.210000e-97 366.0
16 TraesCS4D01G076200 chr2A 78.689 366 64 6 1803 2155 164704823 164704459 8.400000e-57 231.0
17 TraesCS4D01G076200 chr2A 82.243 107 17 2 1303 1408 164705024 164704919 1.490000e-14 91.6
18 TraesCS4D01G076200 chr7B 85.852 311 42 2 1 311 481054453 481054761 2.900000e-86 329.0
19 TraesCS4D01G076200 chr7B 82.075 318 48 7 1 312 553409499 553409813 2.980000e-66 263.0
20 TraesCS4D01G076200 chr7D 84.984 313 44 1 2 311 412150183 412150495 8.110000e-82 315.0
21 TraesCS4D01G076200 chr7D 86.620 284 37 1 29 312 395938781 395939063 2.920000e-81 313.0
22 TraesCS4D01G076200 chr1A 85.714 259 34 2 4 259 478563312 478563054 1.780000e-68 270.0
23 TraesCS4D01G076200 chr1B 82.645 242 42 0 71 312 656531984 656531743 8.460000e-52 215.0
24 TraesCS4D01G076200 chr3D 80.000 275 49 4 42 311 470687328 470687601 8.520000e-47 198.0
25 TraesCS4D01G076200 chrUn 95.000 40 2 0 1 40 364003903 364003942 3.240000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G076200 chr4D 50769026 50772912 3886 True 7179.000000 7179 100.000000 1 3887 1 chr4D.!!$R1 3886
1 TraesCS4D01G076200 chr4B 74680310 74683849 3539 True 4815.000000 4815 91.309000 313 3883 1 chr4B.!!$R1 3570
2 TraesCS4D01G076200 chr4A 546209477 546213002 3525 False 4787.000000 4787 91.237000 313 3879 1 chr4A.!!$F1 3566
3 TraesCS4D01G076200 chr5D 89379990 89381982 1992 False 403.333333 555 82.860667 993 2852 3 chr5D.!!$F1 1859
4 TraesCS4D01G076200 chr5B 94676386 94677444 1058 True 449.500000 555 83.953500 1803 2852 2 chr5B.!!$R1 1049
5 TraesCS4D01G076200 chr5A 83276469 83278452 1983 False 395.333333 553 82.435667 993 2852 3 chr5A.!!$F1 1859
6 TraesCS4D01G076200 chr2D 136832035 136833273 1238 False 237.000000 370 79.199000 1205 2745 2 chr2D.!!$F1 1540
7 TraesCS4D01G076200 chr2A 164703898 164705024 1126 True 229.533333 366 80.986667 1303 2740 3 chr2A.!!$R1 1437

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 228 0.029300 CGCATTGTAGAAATGGCCCG 59.971 55.0 0.00 0.0 0.00 6.13 F
232 233 0.035820 TGTAGAAATGGCCCGGACAC 60.036 55.0 0.73 0.0 0.00 3.67 F
284 285 0.108329 CTGGCCAAATAGACGTCCGT 60.108 55.0 13.01 0.0 0.00 4.69 F
527 553 0.110644 CAAGCGTCCAAAGCGAGAAC 60.111 55.0 0.00 0.0 40.04 3.01 F
534 560 0.512952 CCAAAGCGAGAACACGAAGG 59.487 55.0 0.00 0.0 35.09 3.46 F
1426 1518 0.980423 AAGCGCTTCTTCTCCTTCCT 59.020 50.0 18.98 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1543 1661 0.574454 GAATTAGCAGAGCGCAGACG 59.426 55.000 11.47 0.0 46.13 4.18 R
1647 1768 2.511659 ACAAATGCAGCAGACATCAGT 58.488 42.857 0.00 0.0 0.00 3.41 R
2246 2769 5.788450 AGCCCTATAGAAAGACATTGATCG 58.212 41.667 0.00 0.0 0.00 3.69 R
2406 2946 3.391626 ACATGACATGCCTGATGATCTCT 59.608 43.478 15.49 0.0 35.80 3.10 R
2754 3294 0.885196 GGAGCTCGACAGTCTCACTT 59.115 55.000 7.83 0.0 0.00 3.16 R
3603 4180 0.104882 TACCCCCTCCAACACACTGA 60.105 55.000 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.017587 CAAAACTATTCATTTTGTAGGTTGGC 57.982 34.615 2.72 0.00 40.57 4.52
32 33 7.539034 AAACTATTCATTTTGTAGGTTGGCT 57.461 32.000 0.00 0.00 0.00 4.75
33 34 8.644374 AAACTATTCATTTTGTAGGTTGGCTA 57.356 30.769 0.00 0.00 0.00 3.93
34 35 8.823220 AACTATTCATTTTGTAGGTTGGCTAT 57.177 30.769 0.00 0.00 0.00 2.97
35 36 8.225603 ACTATTCATTTTGTAGGTTGGCTATG 57.774 34.615 0.00 0.00 0.00 2.23
36 37 7.834181 ACTATTCATTTTGTAGGTTGGCTATGT 59.166 33.333 0.00 0.00 0.00 2.29
37 38 6.909550 TTCATTTTGTAGGTTGGCTATGTT 57.090 33.333 0.00 0.00 0.00 2.71
38 39 6.266168 TCATTTTGTAGGTTGGCTATGTTG 57.734 37.500 0.00 0.00 0.00 3.33
39 40 4.513198 TTTTGTAGGTTGGCTATGTTGC 57.487 40.909 0.00 0.00 0.00 4.17
46 47 3.518068 GGCTATGTTGCCGGCCAC 61.518 66.667 26.77 24.81 43.74 5.01
47 48 2.438434 GCTATGTTGCCGGCCACT 60.438 61.111 28.69 17.44 0.00 4.00
48 49 2.764314 GCTATGTTGCCGGCCACTG 61.764 63.158 28.69 19.50 0.00 3.66
49 50 2.045438 TATGTTGCCGGCCACTGG 60.045 61.111 28.69 0.00 0.00 4.00
59 60 3.525221 GCCACTGGCTGTGTTGTT 58.475 55.556 20.92 0.00 46.69 2.83
60 61 1.066257 GCCACTGGCTGTGTTGTTG 59.934 57.895 20.92 8.24 46.69 3.33
61 62 1.735360 CCACTGGCTGTGTTGTTGG 59.265 57.895 20.92 3.25 44.81 3.77
62 63 1.066257 CACTGGCTGTGTTGTTGGC 59.934 57.895 15.53 0.00 41.53 4.52
63 64 2.332514 CTGGCTGTGTTGTTGGCG 59.667 61.111 0.00 0.00 0.00 5.69
64 65 2.439338 TGGCTGTGTTGTTGGCGT 60.439 55.556 0.00 0.00 0.00 5.68
65 66 2.026014 GGCTGTGTTGTTGGCGTG 59.974 61.111 0.00 0.00 0.00 5.34
66 67 2.026014 GCTGTGTTGTTGGCGTGG 59.974 61.111 0.00 0.00 0.00 4.94
67 68 2.477176 GCTGTGTTGTTGGCGTGGA 61.477 57.895 0.00 0.00 0.00 4.02
68 69 1.355210 CTGTGTTGTTGGCGTGGAC 59.645 57.895 0.00 0.00 0.00 4.02
69 70 1.372838 CTGTGTTGTTGGCGTGGACA 61.373 55.000 0.00 0.00 0.00 4.02
70 71 0.749818 TGTGTTGTTGGCGTGGACAT 60.750 50.000 0.00 0.00 0.00 3.06
71 72 0.317770 GTGTTGTTGGCGTGGACATG 60.318 55.000 0.00 0.00 0.00 3.21
72 73 0.749818 TGTTGTTGGCGTGGACATGT 60.750 50.000 0.00 0.00 0.00 3.21
73 74 1.231221 GTTGTTGGCGTGGACATGTA 58.769 50.000 0.00 0.00 0.00 2.29
74 75 1.196808 GTTGTTGGCGTGGACATGTAG 59.803 52.381 0.00 0.00 0.00 2.74
75 76 0.321210 TGTTGGCGTGGACATGTAGG 60.321 55.000 0.00 0.00 0.00 3.18
76 77 0.321298 GTTGGCGTGGACATGTAGGT 60.321 55.000 0.00 0.00 0.00 3.08
77 78 0.321210 TTGGCGTGGACATGTAGGTG 60.321 55.000 0.00 0.00 0.00 4.00
78 79 1.449601 GGCGTGGACATGTAGGTGG 60.450 63.158 0.00 0.00 0.00 4.61
79 80 1.449601 GCGTGGACATGTAGGTGGG 60.450 63.158 0.00 0.00 0.00 4.61
80 81 1.449601 CGTGGACATGTAGGTGGGC 60.450 63.158 0.00 0.00 0.00 5.36
81 82 1.899437 CGTGGACATGTAGGTGGGCT 61.899 60.000 0.00 0.00 0.00 5.19
82 83 0.392998 GTGGACATGTAGGTGGGCTG 60.393 60.000 0.00 0.00 0.00 4.85
83 84 0.840288 TGGACATGTAGGTGGGCTGT 60.840 55.000 0.00 0.00 0.00 4.40
84 85 0.392998 GGACATGTAGGTGGGCTGTG 60.393 60.000 0.00 0.00 0.00 3.66
85 86 0.324943 GACATGTAGGTGGGCTGTGT 59.675 55.000 0.00 0.00 0.00 3.72
86 87 0.771127 ACATGTAGGTGGGCTGTGTT 59.229 50.000 0.00 0.00 0.00 3.32
87 88 1.144913 ACATGTAGGTGGGCTGTGTTT 59.855 47.619 0.00 0.00 0.00 2.83
88 89 1.812571 CATGTAGGTGGGCTGTGTTTC 59.187 52.381 0.00 0.00 0.00 2.78
89 90 0.109723 TGTAGGTGGGCTGTGTTTCC 59.890 55.000 0.00 0.00 0.00 3.13
90 91 0.953960 GTAGGTGGGCTGTGTTTCCG 60.954 60.000 0.00 0.00 0.00 4.30
91 92 2.119484 TAGGTGGGCTGTGTTTCCGG 62.119 60.000 0.00 0.00 0.00 5.14
92 93 3.670377 GTGGGCTGTGTTTCCGGC 61.670 66.667 0.00 0.00 0.00 6.13
93 94 4.196778 TGGGCTGTGTTTCCGGCA 62.197 61.111 0.00 0.00 0.00 5.69
94 95 2.676471 GGGCTGTGTTTCCGGCAT 60.676 61.111 0.00 0.00 0.00 4.40
95 96 2.568090 GGCTGTGTTTCCGGCATG 59.432 61.111 0.00 0.00 0.00 4.06
96 97 1.971167 GGCTGTGTTTCCGGCATGA 60.971 57.895 0.00 0.00 0.00 3.07
97 98 1.523154 GGCTGTGTTTCCGGCATGAA 61.523 55.000 0.00 0.00 0.00 2.57
98 99 0.527565 GCTGTGTTTCCGGCATGAAT 59.472 50.000 0.00 0.00 0.00 2.57
99 100 1.067635 GCTGTGTTTCCGGCATGAATT 60.068 47.619 0.00 0.00 0.00 2.17
100 101 2.163412 GCTGTGTTTCCGGCATGAATTA 59.837 45.455 0.00 0.00 0.00 1.40
101 102 3.731867 GCTGTGTTTCCGGCATGAATTAG 60.732 47.826 0.00 0.00 0.00 1.73
102 103 3.680490 TGTGTTTCCGGCATGAATTAGA 58.320 40.909 0.00 0.00 0.00 2.10
103 104 3.689161 TGTGTTTCCGGCATGAATTAGAG 59.311 43.478 0.00 0.00 0.00 2.43
104 105 2.682856 TGTTTCCGGCATGAATTAGAGC 59.317 45.455 0.00 0.00 0.00 4.09
105 106 1.967319 TTCCGGCATGAATTAGAGCC 58.033 50.000 0.00 4.81 43.61 4.70
108 109 3.012560 GGCATGAATTAGAGCCGCT 57.987 52.632 0.00 0.00 37.41 5.52
109 110 0.590195 GGCATGAATTAGAGCCGCTG 59.410 55.000 0.00 0.00 37.41 5.18
110 111 0.590195 GCATGAATTAGAGCCGCTGG 59.410 55.000 0.00 0.00 0.00 4.85
121 122 4.131376 CCGCTGGCATGAACTAGG 57.869 61.111 0.00 0.00 0.00 3.02
122 123 1.524621 CCGCTGGCATGAACTAGGG 60.525 63.158 0.00 0.00 0.00 3.53
123 124 2.182842 CGCTGGCATGAACTAGGGC 61.183 63.158 0.00 0.00 36.02 5.19
124 125 2.182842 GCTGGCATGAACTAGGGCG 61.183 63.158 0.00 0.00 38.65 6.13
125 126 1.221840 CTGGCATGAACTAGGGCGT 59.778 57.895 0.00 0.00 38.65 5.68
126 127 1.078497 TGGCATGAACTAGGGCGTG 60.078 57.895 0.00 0.00 38.65 5.34
127 128 1.819632 GGCATGAACTAGGGCGTGG 60.820 63.158 0.00 0.00 0.00 4.94
128 129 1.078426 GCATGAACTAGGGCGTGGT 60.078 57.895 0.00 0.00 0.00 4.16
129 130 0.676782 GCATGAACTAGGGCGTGGTT 60.677 55.000 8.72 8.72 31.27 3.67
130 131 1.821216 CATGAACTAGGGCGTGGTTT 58.179 50.000 10.27 0.00 28.09 3.27
131 132 2.937873 GCATGAACTAGGGCGTGGTTTA 60.938 50.000 10.27 6.86 28.09 2.01
132 133 3.541632 CATGAACTAGGGCGTGGTTTAT 58.458 45.455 10.27 8.88 28.09 1.40
133 134 3.706600 TGAACTAGGGCGTGGTTTATT 57.293 42.857 10.27 0.00 28.09 1.40
134 135 3.602483 TGAACTAGGGCGTGGTTTATTC 58.398 45.455 10.27 0.00 28.09 1.75
135 136 3.008157 TGAACTAGGGCGTGGTTTATTCA 59.992 43.478 10.27 1.44 28.09 2.57
136 137 3.706600 ACTAGGGCGTGGTTTATTCAA 57.293 42.857 0.00 0.00 0.00 2.69
137 138 4.023726 ACTAGGGCGTGGTTTATTCAAA 57.976 40.909 0.00 0.00 0.00 2.69
138 139 4.400120 ACTAGGGCGTGGTTTATTCAAAA 58.600 39.130 0.00 0.00 0.00 2.44
139 140 4.828387 ACTAGGGCGTGGTTTATTCAAAAA 59.172 37.500 0.00 0.00 0.00 1.94
140 141 4.882842 AGGGCGTGGTTTATTCAAAAAT 57.117 36.364 0.00 0.00 0.00 1.82
141 142 5.222079 AGGGCGTGGTTTATTCAAAAATT 57.778 34.783 0.00 0.00 0.00 1.82
142 143 4.994217 AGGGCGTGGTTTATTCAAAAATTG 59.006 37.500 0.00 0.00 0.00 2.32
143 144 4.153296 GGGCGTGGTTTATTCAAAAATTGG 59.847 41.667 0.00 0.00 0.00 3.16
144 145 4.377943 GGCGTGGTTTATTCAAAAATTGGC 60.378 41.667 0.00 0.00 0.00 4.52
145 146 4.665394 GCGTGGTTTATTCAAAAATTGGCG 60.665 41.667 0.00 0.00 0.00 5.69
146 147 4.446051 CGTGGTTTATTCAAAAATTGGCGT 59.554 37.500 0.00 0.00 0.00 5.68
147 148 5.050702 CGTGGTTTATTCAAAAATTGGCGTT 60.051 36.000 0.00 0.00 0.00 4.84
148 149 6.510317 CGTGGTTTATTCAAAAATTGGCGTTT 60.510 34.615 0.00 0.00 0.00 3.60
149 150 6.630840 GTGGTTTATTCAAAAATTGGCGTTTG 59.369 34.615 0.00 0.00 36.30 2.93
150 151 6.538742 TGGTTTATTCAAAAATTGGCGTTTGA 59.461 30.769 0.00 0.00 40.93 2.69
156 157 5.873732 TCAAAAATTGGCGTTTGAAAAAGG 58.126 33.333 1.42 0.00 40.00 3.11
157 158 5.643777 TCAAAAATTGGCGTTTGAAAAAGGA 59.356 32.000 1.42 0.00 40.00 3.36
158 159 5.733226 AAAATTGGCGTTTGAAAAAGGAG 57.267 34.783 0.00 0.00 0.00 3.69
159 160 2.880963 TTGGCGTTTGAAAAAGGAGG 57.119 45.000 0.00 0.00 0.00 4.30
160 161 0.387565 TGGCGTTTGAAAAAGGAGGC 59.612 50.000 0.00 0.00 0.00 4.70
161 162 0.663269 GGCGTTTGAAAAAGGAGGCG 60.663 55.000 0.00 0.00 0.00 5.52
162 163 0.663269 GCGTTTGAAAAAGGAGGCGG 60.663 55.000 0.00 0.00 0.00 6.13
163 164 0.948678 CGTTTGAAAAAGGAGGCGGA 59.051 50.000 0.00 0.00 0.00 5.54
164 165 1.539827 CGTTTGAAAAAGGAGGCGGAT 59.460 47.619 0.00 0.00 0.00 4.18
165 166 2.745281 CGTTTGAAAAAGGAGGCGGATA 59.255 45.455 0.00 0.00 0.00 2.59
166 167 3.189702 CGTTTGAAAAAGGAGGCGGATAA 59.810 43.478 0.00 0.00 0.00 1.75
167 168 4.671766 CGTTTGAAAAAGGAGGCGGATAAG 60.672 45.833 0.00 0.00 0.00 1.73
168 169 3.992943 TGAAAAAGGAGGCGGATAAGA 57.007 42.857 0.00 0.00 0.00 2.10
169 170 4.503714 TGAAAAAGGAGGCGGATAAGAT 57.496 40.909 0.00 0.00 0.00 2.40
170 171 4.199310 TGAAAAAGGAGGCGGATAAGATG 58.801 43.478 0.00 0.00 0.00 2.90
171 172 2.262423 AAAGGAGGCGGATAAGATGC 57.738 50.000 0.00 0.00 0.00 3.91
173 174 1.374758 GGAGGCGGATAAGATGCGG 60.375 63.158 2.57 0.00 44.69 5.69
176 177 3.248029 GCGGATAAGATGCGGCTG 58.752 61.111 0.00 0.00 44.69 4.85
177 178 2.320587 GCGGATAAGATGCGGCTGG 61.321 63.158 0.00 0.00 44.69 4.85
178 179 1.367471 CGGATAAGATGCGGCTGGA 59.633 57.895 0.00 0.00 40.62 3.86
179 180 0.249868 CGGATAAGATGCGGCTGGAA 60.250 55.000 0.00 0.00 40.62 3.53
180 181 1.609061 CGGATAAGATGCGGCTGGAAT 60.609 52.381 0.00 0.00 40.62 3.01
181 182 1.808945 GGATAAGATGCGGCTGGAATG 59.191 52.381 0.00 0.00 0.00 2.67
182 183 1.198637 GATAAGATGCGGCTGGAATGC 59.801 52.381 0.00 0.00 0.00 3.56
183 184 1.159713 TAAGATGCGGCTGGAATGCG 61.160 55.000 0.00 0.00 0.00 4.73
184 185 3.204827 GATGCGGCTGGAATGCGT 61.205 61.111 0.00 0.00 0.00 5.24
185 186 3.173390 GATGCGGCTGGAATGCGTC 62.173 63.158 0.00 0.00 37.47 5.19
218 219 2.125310 CGGCCACCGCATTGTAGA 60.125 61.111 2.24 0.00 41.17 2.59
219 220 1.743623 CGGCCACCGCATTGTAGAA 60.744 57.895 2.24 0.00 41.17 2.10
220 221 1.302383 CGGCCACCGCATTGTAGAAA 61.302 55.000 2.24 0.00 41.17 2.52
221 222 1.102978 GGCCACCGCATTGTAGAAAT 58.897 50.000 0.00 0.00 36.38 2.17
222 223 1.202290 GGCCACCGCATTGTAGAAATG 60.202 52.381 0.00 0.00 36.38 2.32
223 224 1.202290 GCCACCGCATTGTAGAAATGG 60.202 52.381 0.67 0.00 34.03 3.16
224 225 1.202290 CCACCGCATTGTAGAAATGGC 60.202 52.381 0.67 0.00 0.00 4.40
225 226 1.102978 ACCGCATTGTAGAAATGGCC 58.897 50.000 0.00 0.00 0.00 5.36
226 227 0.385390 CCGCATTGTAGAAATGGCCC 59.615 55.000 0.00 0.00 0.00 5.80
227 228 0.029300 CGCATTGTAGAAATGGCCCG 59.971 55.000 0.00 0.00 0.00 6.13
228 229 0.385390 GCATTGTAGAAATGGCCCGG 59.615 55.000 0.00 0.00 0.00 5.73
229 230 2.021723 GCATTGTAGAAATGGCCCGGA 61.022 52.381 0.73 0.00 0.00 5.14
230 231 1.676006 CATTGTAGAAATGGCCCGGAC 59.324 52.381 0.73 0.00 0.00 4.79
231 232 0.693622 TTGTAGAAATGGCCCGGACA 59.306 50.000 0.73 0.00 0.00 4.02
232 233 0.035820 TGTAGAAATGGCCCGGACAC 60.036 55.000 0.73 0.00 0.00 3.67
233 234 1.087771 GTAGAAATGGCCCGGACACG 61.088 60.000 0.73 0.00 40.55 4.49
234 235 1.259142 TAGAAATGGCCCGGACACGA 61.259 55.000 0.73 0.00 44.60 4.35
235 236 1.451387 GAAATGGCCCGGACACGAT 60.451 57.895 0.73 0.00 44.60 3.73
236 237 1.436983 GAAATGGCCCGGACACGATC 61.437 60.000 0.73 0.00 44.60 3.69
237 238 1.910580 AAATGGCCCGGACACGATCT 61.911 55.000 0.73 0.00 44.60 2.75
238 239 2.311688 AATGGCCCGGACACGATCTC 62.312 60.000 0.73 0.00 44.60 2.75
239 240 3.458163 GGCCCGGACACGATCTCA 61.458 66.667 0.73 0.00 44.60 3.27
240 241 2.797278 GGCCCGGACACGATCTCAT 61.797 63.158 0.73 0.00 44.60 2.90
241 242 1.144057 GCCCGGACACGATCTCATT 59.856 57.895 0.73 0.00 44.60 2.57
242 243 1.154205 GCCCGGACACGATCTCATTG 61.154 60.000 0.73 0.00 44.60 2.82
243 244 0.175760 CCCGGACACGATCTCATTGT 59.824 55.000 0.73 0.00 44.60 2.71
244 245 1.560923 CCGGACACGATCTCATTGTC 58.439 55.000 0.00 0.00 44.60 3.18
249 250 3.190874 GACACGATCTCATTGTCCTTCC 58.809 50.000 0.00 0.00 34.72 3.46
250 251 2.093447 ACACGATCTCATTGTCCTTCCC 60.093 50.000 0.00 0.00 0.00 3.97
251 252 2.093500 CACGATCTCATTGTCCTTCCCA 60.093 50.000 0.00 0.00 0.00 4.37
252 253 2.571653 ACGATCTCATTGTCCTTCCCAA 59.428 45.455 0.00 0.00 0.00 4.12
253 254 3.009033 ACGATCTCATTGTCCTTCCCAAA 59.991 43.478 0.00 0.00 0.00 3.28
254 255 3.375299 CGATCTCATTGTCCTTCCCAAAC 59.625 47.826 0.00 0.00 0.00 2.93
255 256 3.874383 TCTCATTGTCCTTCCCAAACA 57.126 42.857 0.00 0.00 0.00 2.83
256 257 3.754965 TCTCATTGTCCTTCCCAAACAG 58.245 45.455 0.00 0.00 0.00 3.16
257 258 3.394274 TCTCATTGTCCTTCCCAAACAGA 59.606 43.478 0.00 0.00 0.00 3.41
258 259 3.486383 TCATTGTCCTTCCCAAACAGAC 58.514 45.455 0.00 0.00 0.00 3.51
259 260 3.117701 TCATTGTCCTTCCCAAACAGACA 60.118 43.478 0.00 0.00 35.75 3.41
260 261 2.638480 TGTCCTTCCCAAACAGACAG 57.362 50.000 0.00 0.00 32.75 3.51
261 262 2.123589 TGTCCTTCCCAAACAGACAGA 58.876 47.619 0.00 0.00 32.75 3.41
262 263 2.507886 TGTCCTTCCCAAACAGACAGAA 59.492 45.455 0.00 0.00 32.75 3.02
263 264 3.138283 TGTCCTTCCCAAACAGACAGAAT 59.862 43.478 0.00 0.00 32.75 2.40
264 265 4.145052 GTCCTTCCCAAACAGACAGAATT 58.855 43.478 0.00 0.00 0.00 2.17
265 266 4.216472 GTCCTTCCCAAACAGACAGAATTC 59.784 45.833 0.00 0.00 0.00 2.17
266 267 4.104738 TCCTTCCCAAACAGACAGAATTCT 59.895 41.667 0.88 0.88 0.00 2.40
268 269 3.754965 TCCCAAACAGACAGAATTCTGG 58.245 45.455 33.11 20.69 46.38 3.86
278 279 5.491635 GACAGAATTCTGGCCAAATAGAC 57.508 43.478 33.11 11.55 46.23 2.59
279 280 4.034510 GACAGAATTCTGGCCAAATAGACG 59.965 45.833 33.11 9.29 46.23 4.18
280 281 3.941483 CAGAATTCTGGCCAAATAGACGT 59.059 43.478 25.14 0.00 40.20 4.34
281 282 4.034510 CAGAATTCTGGCCAAATAGACGTC 59.965 45.833 25.14 7.70 40.20 4.34
282 283 2.396590 TTCTGGCCAAATAGACGTCC 57.603 50.000 13.01 0.00 0.00 4.79
283 284 0.174845 TCTGGCCAAATAGACGTCCG 59.825 55.000 13.01 0.00 0.00 4.79
284 285 0.108329 CTGGCCAAATAGACGTCCGT 60.108 55.000 13.01 0.00 0.00 4.69
285 286 0.322322 TGGCCAAATAGACGTCCGTT 59.678 50.000 13.01 4.45 0.00 4.44
286 287 1.270947 TGGCCAAATAGACGTCCGTTT 60.271 47.619 13.01 10.77 0.00 3.60
287 288 1.129811 GGCCAAATAGACGTCCGTTTG 59.870 52.381 25.02 25.02 0.00 2.93
289 290 1.735571 CCAAATAGACGTCCGTTTGGG 59.264 52.381 33.55 23.04 44.21 4.12
290 291 1.735571 CAAATAGACGTCCGTTTGGGG 59.264 52.381 24.59 8.93 36.01 4.96
291 292 0.978907 AATAGACGTCCGTTTGGGGT 59.021 50.000 13.01 0.00 36.01 4.95
292 293 0.533951 ATAGACGTCCGTTTGGGGTC 59.466 55.000 13.01 0.00 38.57 4.46
293 294 0.827089 TAGACGTCCGTTTGGGGTCA 60.827 55.000 13.01 0.00 39.86 4.02
294 295 1.004200 GACGTCCGTTTGGGGTCAT 60.004 57.895 3.51 0.00 38.33 3.06
295 296 1.296056 GACGTCCGTTTGGGGTCATG 61.296 60.000 3.51 0.00 38.33 3.07
296 297 2.686816 CGTCCGTTTGGGGTCATGC 61.687 63.158 0.00 0.00 36.01 4.06
297 298 2.359354 TCCGTTTGGGGTCATGCG 60.359 61.111 0.00 0.00 36.01 4.73
298 299 4.114997 CCGTTTGGGGTCATGCGC 62.115 66.667 0.00 0.00 0.00 6.09
299 300 3.055719 CGTTTGGGGTCATGCGCT 61.056 61.111 9.73 0.00 0.00 5.92
300 301 2.568090 GTTTGGGGTCATGCGCTG 59.432 61.111 9.73 4.58 0.00 5.18
301 302 2.676121 TTTGGGGTCATGCGCTGG 60.676 61.111 9.73 0.00 0.00 4.85
302 303 3.203086 TTTGGGGTCATGCGCTGGA 62.203 57.895 9.73 2.67 0.00 3.86
303 304 3.626996 TTGGGGTCATGCGCTGGAG 62.627 63.158 9.73 0.00 0.00 3.86
304 305 4.101448 GGGGTCATGCGCTGGAGT 62.101 66.667 9.73 0.00 0.00 3.85
305 306 2.045926 GGGTCATGCGCTGGAGTT 60.046 61.111 9.73 0.00 0.00 3.01
306 307 2.401766 GGGTCATGCGCTGGAGTTG 61.402 63.158 9.73 0.00 0.00 3.16
307 308 2.401766 GGTCATGCGCTGGAGTTGG 61.402 63.158 9.73 0.00 0.00 3.77
308 309 2.747460 TCATGCGCTGGAGTTGGC 60.747 61.111 9.73 0.00 0.00 4.52
309 310 3.818787 CATGCGCTGGAGTTGGCC 61.819 66.667 9.73 0.00 0.00 5.36
310 311 4.039092 ATGCGCTGGAGTTGGCCT 62.039 61.111 9.73 0.00 0.00 5.19
311 312 2.669133 ATGCGCTGGAGTTGGCCTA 61.669 57.895 9.73 0.00 0.00 3.93
341 342 6.068676 TGGCATCTCCCAATATATGATGGATT 60.069 38.462 9.53 0.00 39.12 3.01
342 343 6.489361 GGCATCTCCCAATATATGATGGATTC 59.511 42.308 9.53 0.00 39.12 2.52
343 344 7.058525 GCATCTCCCAATATATGATGGATTCA 58.941 38.462 9.53 0.00 39.12 2.57
344 345 7.228906 GCATCTCCCAATATATGATGGATTCAG 59.771 40.741 9.53 2.20 39.12 3.02
359 364 2.673775 TTCAGGCATGTTTCTCCCAA 57.326 45.000 0.00 0.00 0.00 4.12
367 372 0.472471 TGTTTCTCCCAAGAAGCGGT 59.528 50.000 0.00 0.00 43.50 5.68
434 439 1.587088 GCACATTGCACGGCATAGC 60.587 57.895 0.00 0.00 44.26 2.97
435 440 1.801983 CACATTGCACGGCATAGCA 59.198 52.632 0.00 0.00 38.76 3.49
436 441 0.382873 CACATTGCACGGCATAGCAT 59.617 50.000 0.00 0.00 40.94 3.79
437 442 1.603326 CACATTGCACGGCATAGCATA 59.397 47.619 0.00 0.00 40.94 3.14
496 521 1.416401 AGCTCCTCCGAAACTGAAACA 59.584 47.619 0.00 0.00 0.00 2.83
504 529 2.471743 CCGAAACTGAAACAGACTCGAC 59.528 50.000 19.59 0.00 39.46 4.20
525 551 2.317609 GCAAGCGTCCAAAGCGAGA 61.318 57.895 0.00 0.00 40.04 4.04
526 552 1.841663 GCAAGCGTCCAAAGCGAGAA 61.842 55.000 0.00 0.00 40.04 2.87
527 553 0.110644 CAAGCGTCCAAAGCGAGAAC 60.111 55.000 0.00 0.00 40.04 3.01
529 555 1.204312 GCGTCCAAAGCGAGAACAC 59.796 57.895 0.00 0.00 0.00 3.32
532 558 1.214367 GTCCAAAGCGAGAACACGAA 58.786 50.000 0.00 0.00 35.09 3.85
534 560 0.512952 CCAAAGCGAGAACACGAAGG 59.487 55.000 0.00 0.00 35.09 3.46
633 659 2.629002 GGAACGGAAGAGCAGCAAA 58.371 52.632 0.00 0.00 0.00 3.68
681 713 1.696832 CCGCTTTAACTGAGCTCGGC 61.697 60.000 22.80 9.54 37.99 5.54
683 715 1.696832 GCTTTAACTGAGCTCGGCGG 61.697 60.000 22.80 8.23 37.18 6.13
685 717 3.659089 TTAACTGAGCTCGGCGGGC 62.659 63.158 27.07 27.07 0.00 6.13
765 801 2.503375 CGGTCGTCACGCCACTAC 60.503 66.667 10.63 0.00 0.00 2.73
815 852 2.126424 GGAGCGTCACGACTCACC 60.126 66.667 18.98 4.43 33.94 4.02
816 853 2.502080 GAGCGTCACGACTCACCG 60.502 66.667 0.00 0.00 33.08 4.94
973 1012 2.637589 CAGCAGCAGCACACACAG 59.362 61.111 3.17 0.00 45.49 3.66
1416 1508 1.144057 CCCCATCGTAAGCGCTTCT 59.856 57.895 28.82 6.33 38.14 2.85
1420 1512 1.855360 CCATCGTAAGCGCTTCTTCTC 59.145 52.381 28.82 11.88 36.25 2.87
1426 1518 0.980423 AAGCGCTTCTTCTCCTTCCT 59.020 50.000 18.98 0.00 0.00 3.36
1434 1531 4.222810 GCTTCTTCTCCTTCCTCTTCTTCT 59.777 45.833 0.00 0.00 0.00 2.85
1444 1543 1.012841 CTCTTCTTCTTCATGCCGCC 58.987 55.000 0.00 0.00 0.00 6.13
1543 1661 6.149142 AGTCAAATCTCTTCTCAAATGTCTGC 59.851 38.462 0.00 0.00 0.00 4.26
1549 1667 1.432514 TCTCAAATGTCTGCGTCTGC 58.567 50.000 0.00 0.00 43.20 4.26
1746 1867 5.082425 AGCTGTTTGATTCAGGGAGAAAAT 58.918 37.500 0.00 0.00 40.22 1.82
1747 1868 5.184671 AGCTGTTTGATTCAGGGAGAAAATC 59.815 40.000 0.00 0.00 40.22 2.17
1748 1869 5.047802 GCTGTTTGATTCAGGGAGAAAATCA 60.048 40.000 0.00 0.00 40.22 2.57
1750 1871 7.148018 GCTGTTTGATTCAGGGAGAAAATCATA 60.148 37.037 0.00 0.00 40.22 2.15
2246 2769 6.978080 TCTTGGCACTTTTACTCAAATGTTTC 59.022 34.615 0.00 0.00 31.58 2.78
2697 3237 2.695359 GAGGAGGTTGCGTTCAATGTA 58.305 47.619 0.00 0.00 34.29 2.29
2754 3294 5.241728 CACCGATATCAAGTCTGGATCTGTA 59.758 44.000 3.12 0.00 0.00 2.74
2877 3417 1.227674 GCTAGCATGGAGGGGAACG 60.228 63.158 10.63 0.00 0.00 3.95
2893 3433 2.933906 GGAACGCATACCTGAAAATCGA 59.066 45.455 0.00 0.00 0.00 3.59
2914 3454 4.330620 CGAAATTGATTTTCAGGCCATTGG 59.669 41.667 5.01 0.00 43.32 3.16
2925 3465 0.451783 GGCCATTGGTACTTGCTTCG 59.548 55.000 4.26 0.00 0.00 3.79
2956 3496 5.098893 GCAACTGACTGATGAGTAGTGTAG 58.901 45.833 0.00 0.00 30.16 2.74
3162 3706 1.584495 GTGCGTTCCCCATTCCAAC 59.416 57.895 0.00 0.00 0.00 3.77
3163 3707 0.893727 GTGCGTTCCCCATTCCAACT 60.894 55.000 0.00 0.00 0.00 3.16
3164 3708 0.693622 TGCGTTCCCCATTCCAACTA 59.306 50.000 0.00 0.00 0.00 2.24
3165 3709 1.092348 GCGTTCCCCATTCCAACTAC 58.908 55.000 0.00 0.00 0.00 2.73
3166 3710 1.339727 GCGTTCCCCATTCCAACTACT 60.340 52.381 0.00 0.00 0.00 2.57
3226 3775 6.546034 GCTCCCCTTTAGCAAATACTAATTGA 59.454 38.462 0.00 0.00 39.83 2.57
3246 3795 4.598022 TGATCAGTGGCATTACATCCAAA 58.402 39.130 0.00 0.00 33.57 3.28
3248 3797 5.657745 TGATCAGTGGCATTACATCCAAATT 59.342 36.000 0.00 0.00 33.57 1.82
3250 3799 4.160065 TCAGTGGCATTACATCCAAATTGG 59.840 41.667 5.48 5.48 39.43 3.16
3251 3800 3.118665 AGTGGCATTACATCCAAATTGGC 60.119 43.478 7.24 0.00 37.47 4.52
3252 3801 3.106054 TGGCATTACATCCAAATTGGCT 58.894 40.909 7.24 0.00 37.47 4.75
3253 3802 3.118702 TGGCATTACATCCAAATTGGCTG 60.119 43.478 13.70 13.70 39.43 4.85
3254 3803 2.867975 GCATTACATCCAAATTGGCTGC 59.132 45.455 15.03 9.06 37.16 5.25
3255 3804 3.431207 GCATTACATCCAAATTGGCTGCT 60.431 43.478 15.03 6.09 37.16 4.24
3256 3805 4.365723 CATTACATCCAAATTGGCTGCTC 58.634 43.478 15.03 0.00 37.16 4.26
3257 3806 1.927487 ACATCCAAATTGGCTGCTCA 58.073 45.000 15.03 0.00 37.16 4.26
3258 3807 1.822990 ACATCCAAATTGGCTGCTCAG 59.177 47.619 15.03 0.00 37.16 3.35
3259 3808 1.822990 CATCCAAATTGGCTGCTCAGT 59.177 47.619 7.24 0.00 37.47 3.41
3325 3881 3.057456 TGTCAGAGAAGCGTAACCTCTTC 60.057 47.826 0.00 0.00 39.08 2.87
3346 3902 2.492484 CTGAACGGCTGTTAGTACCTCT 59.508 50.000 11.80 0.00 38.78 3.69
3374 3932 5.705905 AGGTTTTTCCATAGTTCTTCCTTCG 59.294 40.000 0.00 0.00 39.02 3.79
3375 3933 5.391449 GTTTTTCCATAGTTCTTCCTTCGC 58.609 41.667 0.00 0.00 0.00 4.70
3376 3934 3.973206 TTCCATAGTTCTTCCTTCGCA 57.027 42.857 0.00 0.00 0.00 5.10
3377 3935 4.487714 TTCCATAGTTCTTCCTTCGCAT 57.512 40.909 0.00 0.00 0.00 4.73
3378 3936 4.060038 TCCATAGTTCTTCCTTCGCATC 57.940 45.455 0.00 0.00 0.00 3.91
3382 3947 3.244033 AGTTCTTCCTTCGCATCTCTG 57.756 47.619 0.00 0.00 0.00 3.35
3429 3994 7.189693 TGTTGTACTCATTAACAGAAGCTTG 57.810 36.000 2.10 0.00 31.34 4.01
3430 3995 6.765989 TGTTGTACTCATTAACAGAAGCTTGT 59.234 34.615 2.10 0.00 31.34 3.16
3433 3998 7.639039 TGTACTCATTAACAGAAGCTTGTTTG 58.361 34.615 2.10 1.86 41.31 2.93
3434 3999 6.699575 ACTCATTAACAGAAGCTTGTTTGT 57.300 33.333 2.10 2.57 41.31 2.83
3437 4002 7.702348 ACTCATTAACAGAAGCTTGTTTGTTTC 59.298 33.333 19.57 0.00 41.31 2.78
3439 4004 6.524101 TTAACAGAAGCTTGTTTGTTTCCT 57.476 33.333 19.57 0.34 41.31 3.36
3469 4035 6.500684 TCCAAAACATCTAATGAGTGAAGC 57.499 37.500 0.00 0.00 0.00 3.86
3501 4068 0.102844 CCCTGTTTTGCACACCACAG 59.897 55.000 6.74 6.74 37.07 3.66
3503 4070 0.866906 CTGTTTTGCACACCACAGCG 60.867 55.000 0.00 0.00 30.79 5.18
3530 4101 3.429410 CCCGGGAATGATTTCAGCTTTTC 60.429 47.826 18.48 0.00 33.23 2.29
3546 4119 3.365364 GCTTTTCCTGGAGATGTTGAACG 60.365 47.826 0.00 0.00 0.00 3.95
3549 4122 0.321564 CCTGGAGATGTTGAACGGCA 60.322 55.000 0.00 0.00 0.00 5.69
3554 4127 1.470098 GAGATGTTGAACGGCAGCAAT 59.530 47.619 0.00 0.00 41.20 3.56
3603 4180 3.803368 GCTTGCATTTTACTTTGGCCTGT 60.803 43.478 3.32 2.84 0.00 4.00
3619 4196 0.250467 CTGTCAGTGTGTTGGAGGGG 60.250 60.000 0.00 0.00 0.00 4.79
3815 4395 1.002624 TTTCGGTGTGCTCCATCCC 60.003 57.895 0.00 0.00 0.00 3.85
3879 4463 4.026052 ACCTTTCCCTTGGCATTAATGAG 58.974 43.478 19.73 7.57 0.00 2.90
3880 4464 3.181472 CCTTTCCCTTGGCATTAATGAGC 60.181 47.826 19.73 4.39 0.00 4.26
3881 4465 2.824689 TCCCTTGGCATTAATGAGCA 57.175 45.000 19.73 0.52 0.00 4.26
3882 4466 2.378038 TCCCTTGGCATTAATGAGCAC 58.622 47.619 19.73 6.32 0.00 4.40
3883 4467 2.025037 TCCCTTGGCATTAATGAGCACT 60.025 45.455 19.73 0.00 0.00 4.40
3884 4468 2.360165 CCCTTGGCATTAATGAGCACTC 59.640 50.000 19.73 0.00 0.00 3.51
3885 4469 2.360165 CCTTGGCATTAATGAGCACTCC 59.640 50.000 19.73 9.75 0.00 3.85
3886 4470 3.285484 CTTGGCATTAATGAGCACTCCT 58.715 45.455 19.73 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.420258 CAAAATGAATAGTTTTGTCGCCG 57.580 39.130 3.80 0.00 40.12 6.46
6 7 7.872483 AGCCAACCTACAAAATGAATAGTTTTG 59.128 33.333 9.14 9.14 46.64 2.44
7 8 7.962441 AGCCAACCTACAAAATGAATAGTTTT 58.038 30.769 0.00 0.00 0.00 2.43
8 9 7.539034 AGCCAACCTACAAAATGAATAGTTT 57.461 32.000 0.00 0.00 0.00 2.66
9 10 8.686334 CATAGCCAACCTACAAAATGAATAGTT 58.314 33.333 0.00 0.00 0.00 2.24
10 11 7.834181 ACATAGCCAACCTACAAAATGAATAGT 59.166 33.333 0.00 0.00 0.00 2.12
11 12 8.225603 ACATAGCCAACCTACAAAATGAATAG 57.774 34.615 0.00 0.00 0.00 1.73
12 13 8.465999 CAACATAGCCAACCTACAAAATGAATA 58.534 33.333 0.00 0.00 0.00 1.75
13 14 7.322664 CAACATAGCCAACCTACAAAATGAAT 58.677 34.615 0.00 0.00 0.00 2.57
14 15 6.686630 CAACATAGCCAACCTACAAAATGAA 58.313 36.000 0.00 0.00 0.00 2.57
15 16 5.336372 GCAACATAGCCAACCTACAAAATGA 60.336 40.000 0.00 0.00 0.00 2.57
16 17 4.864247 GCAACATAGCCAACCTACAAAATG 59.136 41.667 0.00 0.00 0.00 2.32
17 18 5.072040 GCAACATAGCCAACCTACAAAAT 57.928 39.130 0.00 0.00 0.00 1.82
18 19 4.513198 GCAACATAGCCAACCTACAAAA 57.487 40.909 0.00 0.00 0.00 2.44
30 31 2.438434 AGTGGCCGGCAACATAGC 60.438 61.111 34.91 13.29 0.00 2.97
31 32 2.114670 CCAGTGGCCGGCAACATAG 61.115 63.158 34.91 22.87 0.00 2.23
32 33 2.045438 CCAGTGGCCGGCAACATA 60.045 61.111 34.91 9.58 0.00 2.29
45 46 2.480610 CGCCAACAACACAGCCAGT 61.481 57.895 0.00 0.00 0.00 4.00
46 47 2.332514 CGCCAACAACACAGCCAG 59.667 61.111 0.00 0.00 0.00 4.85
47 48 2.439338 ACGCCAACAACACAGCCA 60.439 55.556 0.00 0.00 0.00 4.75
48 49 2.026014 CACGCCAACAACACAGCC 59.974 61.111 0.00 0.00 0.00 4.85
49 50 2.026014 CCACGCCAACAACACAGC 59.974 61.111 0.00 0.00 0.00 4.40
50 51 1.355210 GTCCACGCCAACAACACAG 59.645 57.895 0.00 0.00 0.00 3.66
51 52 0.749818 ATGTCCACGCCAACAACACA 60.750 50.000 0.00 0.00 0.00 3.72
52 53 0.317770 CATGTCCACGCCAACAACAC 60.318 55.000 0.00 0.00 0.00 3.32
53 54 0.749818 ACATGTCCACGCCAACAACA 60.750 50.000 0.00 0.00 0.00 3.33
54 55 1.196808 CTACATGTCCACGCCAACAAC 59.803 52.381 0.00 0.00 0.00 3.32
55 56 1.518325 CTACATGTCCACGCCAACAA 58.482 50.000 0.00 0.00 0.00 2.83
56 57 0.321210 CCTACATGTCCACGCCAACA 60.321 55.000 0.00 0.00 0.00 3.33
57 58 0.321298 ACCTACATGTCCACGCCAAC 60.321 55.000 0.00 0.00 0.00 3.77
58 59 0.321210 CACCTACATGTCCACGCCAA 60.321 55.000 0.00 0.00 0.00 4.52
59 60 1.295101 CACCTACATGTCCACGCCA 59.705 57.895 0.00 0.00 0.00 5.69
60 61 1.449601 CCACCTACATGTCCACGCC 60.450 63.158 0.00 0.00 0.00 5.68
61 62 1.449601 CCCACCTACATGTCCACGC 60.450 63.158 0.00 0.00 0.00 5.34
62 63 1.449601 GCCCACCTACATGTCCACG 60.450 63.158 0.00 0.00 0.00 4.94
63 64 0.392998 CAGCCCACCTACATGTCCAC 60.393 60.000 0.00 0.00 0.00 4.02
64 65 0.840288 ACAGCCCACCTACATGTCCA 60.840 55.000 0.00 0.00 0.00 4.02
65 66 0.392998 CACAGCCCACCTACATGTCC 60.393 60.000 0.00 0.00 0.00 4.02
66 67 0.324943 ACACAGCCCACCTACATGTC 59.675 55.000 0.00 0.00 0.00 3.06
67 68 0.771127 AACACAGCCCACCTACATGT 59.229 50.000 2.69 2.69 0.00 3.21
68 69 1.812571 GAAACACAGCCCACCTACATG 59.187 52.381 0.00 0.00 0.00 3.21
69 70 1.271926 GGAAACACAGCCCACCTACAT 60.272 52.381 0.00 0.00 0.00 2.29
70 71 0.109723 GGAAACACAGCCCACCTACA 59.890 55.000 0.00 0.00 0.00 2.74
71 72 0.953960 CGGAAACACAGCCCACCTAC 60.954 60.000 0.00 0.00 0.00 3.18
72 73 1.373435 CGGAAACACAGCCCACCTA 59.627 57.895 0.00 0.00 0.00 3.08
73 74 2.113139 CGGAAACACAGCCCACCT 59.887 61.111 0.00 0.00 0.00 4.00
74 75 2.983592 CCGGAAACACAGCCCACC 60.984 66.667 0.00 0.00 0.00 4.61
75 76 3.670377 GCCGGAAACACAGCCCAC 61.670 66.667 5.05 0.00 0.00 4.61
76 77 3.505790 ATGCCGGAAACACAGCCCA 62.506 57.895 5.05 0.00 0.00 5.36
77 78 2.676471 ATGCCGGAAACACAGCCC 60.676 61.111 5.05 0.00 0.00 5.19
78 79 1.523154 TTCATGCCGGAAACACAGCC 61.523 55.000 5.05 0.00 0.00 4.85
79 80 0.527565 ATTCATGCCGGAAACACAGC 59.472 50.000 5.05 0.00 0.00 4.40
80 81 3.689161 TCTAATTCATGCCGGAAACACAG 59.311 43.478 5.05 0.00 0.00 3.66
81 82 3.680490 TCTAATTCATGCCGGAAACACA 58.320 40.909 5.05 0.00 0.00 3.72
82 83 3.487544 GCTCTAATTCATGCCGGAAACAC 60.488 47.826 5.05 0.00 0.00 3.32
83 84 2.682856 GCTCTAATTCATGCCGGAAACA 59.317 45.455 5.05 0.00 0.00 2.83
84 85 2.033424 GGCTCTAATTCATGCCGGAAAC 59.967 50.000 5.05 0.00 35.79 2.78
85 86 2.297701 GGCTCTAATTCATGCCGGAAA 58.702 47.619 5.05 0.00 35.79 3.13
86 87 1.967319 GGCTCTAATTCATGCCGGAA 58.033 50.000 5.05 0.00 35.79 4.30
87 88 3.706055 GGCTCTAATTCATGCCGGA 57.294 52.632 5.05 0.00 35.79 5.14
90 91 0.590195 CAGCGGCTCTAATTCATGCC 59.410 55.000 0.00 5.69 41.76 4.40
91 92 0.590195 CCAGCGGCTCTAATTCATGC 59.410 55.000 0.00 0.00 0.00 4.06
92 93 0.590195 GCCAGCGGCTCTAATTCATG 59.410 55.000 0.00 0.00 46.69 3.07
93 94 3.012560 GCCAGCGGCTCTAATTCAT 57.987 52.632 0.00 0.00 46.69 2.57
94 95 4.540153 GCCAGCGGCTCTAATTCA 57.460 55.556 0.00 0.00 46.69 2.57
104 105 1.524621 CCCTAGTTCATGCCAGCGG 60.525 63.158 0.00 0.00 0.00 5.52
105 106 2.182842 GCCCTAGTTCATGCCAGCG 61.183 63.158 0.00 0.00 0.00 5.18
106 107 2.182842 CGCCCTAGTTCATGCCAGC 61.183 63.158 0.00 0.00 0.00 4.85
107 108 1.091771 CACGCCCTAGTTCATGCCAG 61.092 60.000 0.00 0.00 0.00 4.85
108 109 1.078497 CACGCCCTAGTTCATGCCA 60.078 57.895 0.00 0.00 0.00 4.92
109 110 1.819632 CCACGCCCTAGTTCATGCC 60.820 63.158 0.00 0.00 0.00 4.40
110 111 0.676782 AACCACGCCCTAGTTCATGC 60.677 55.000 0.00 0.00 0.00 4.06
111 112 1.821216 AAACCACGCCCTAGTTCATG 58.179 50.000 0.00 0.00 0.00 3.07
112 113 3.926058 ATAAACCACGCCCTAGTTCAT 57.074 42.857 0.00 0.00 0.00 2.57
113 114 3.008157 TGAATAAACCACGCCCTAGTTCA 59.992 43.478 0.00 0.00 0.00 3.18
114 115 3.602483 TGAATAAACCACGCCCTAGTTC 58.398 45.455 0.00 0.00 0.00 3.01
115 116 3.706600 TGAATAAACCACGCCCTAGTT 57.293 42.857 0.00 0.00 0.00 2.24
116 117 3.706600 TTGAATAAACCACGCCCTAGT 57.293 42.857 0.00 0.00 0.00 2.57
117 118 5.379732 TTTTTGAATAAACCACGCCCTAG 57.620 39.130 0.00 0.00 0.00 3.02
118 119 5.986501 ATTTTTGAATAAACCACGCCCTA 57.013 34.783 0.00 0.00 0.00 3.53
119 120 4.882842 ATTTTTGAATAAACCACGCCCT 57.117 36.364 0.00 0.00 0.00 5.19
120 121 4.153296 CCAATTTTTGAATAAACCACGCCC 59.847 41.667 0.00 0.00 0.00 6.13
121 122 4.377943 GCCAATTTTTGAATAAACCACGCC 60.378 41.667 0.00 0.00 0.00 5.68
122 123 4.665394 CGCCAATTTTTGAATAAACCACGC 60.665 41.667 0.00 0.00 0.00 5.34
123 124 4.446051 ACGCCAATTTTTGAATAAACCACG 59.554 37.500 0.00 0.00 0.00 4.94
124 125 5.915812 ACGCCAATTTTTGAATAAACCAC 57.084 34.783 0.00 0.00 0.00 4.16
125 126 6.538742 TCAAACGCCAATTTTTGAATAAACCA 59.461 30.769 1.42 0.00 38.48 3.67
126 127 6.949449 TCAAACGCCAATTTTTGAATAAACC 58.051 32.000 1.42 0.00 38.48 3.27
127 128 8.828029 TTTCAAACGCCAATTTTTGAATAAAC 57.172 26.923 13.71 0.00 46.11 2.01
128 129 9.840427 TTTTTCAAACGCCAATTTTTGAATAAA 57.160 22.222 13.71 13.19 46.11 1.40
129 130 9.495754 CTTTTTCAAACGCCAATTTTTGAATAA 57.504 25.926 13.71 13.60 46.11 1.40
130 131 8.125448 CCTTTTTCAAACGCCAATTTTTGAATA 58.875 29.630 13.71 8.53 46.11 1.75
131 132 6.971756 CCTTTTTCAAACGCCAATTTTTGAAT 59.028 30.769 13.71 0.00 46.11 2.57
132 133 6.149474 TCCTTTTTCAAACGCCAATTTTTGAA 59.851 30.769 10.35 10.35 45.53 2.69
133 134 5.643777 TCCTTTTTCAAACGCCAATTTTTGA 59.356 32.000 0.00 0.00 39.42 2.69
134 135 5.873732 TCCTTTTTCAAACGCCAATTTTTG 58.126 33.333 0.00 0.00 34.57 2.44
135 136 5.065859 CCTCCTTTTTCAAACGCCAATTTTT 59.934 36.000 0.00 0.00 0.00 1.94
136 137 4.574421 CCTCCTTTTTCAAACGCCAATTTT 59.426 37.500 0.00 0.00 0.00 1.82
137 138 4.126437 CCTCCTTTTTCAAACGCCAATTT 58.874 39.130 0.00 0.00 0.00 1.82
138 139 3.727726 CCTCCTTTTTCAAACGCCAATT 58.272 40.909 0.00 0.00 0.00 2.32
139 140 2.547855 GCCTCCTTTTTCAAACGCCAAT 60.548 45.455 0.00 0.00 0.00 3.16
140 141 1.202475 GCCTCCTTTTTCAAACGCCAA 60.202 47.619 0.00 0.00 0.00 4.52
141 142 0.387565 GCCTCCTTTTTCAAACGCCA 59.612 50.000 0.00 0.00 0.00 5.69
142 143 0.663269 CGCCTCCTTTTTCAAACGCC 60.663 55.000 0.00 0.00 0.00 5.68
143 144 0.663269 CCGCCTCCTTTTTCAAACGC 60.663 55.000 0.00 0.00 0.00 4.84
144 145 0.948678 TCCGCCTCCTTTTTCAAACG 59.051 50.000 0.00 0.00 0.00 3.60
145 146 4.457949 TCTTATCCGCCTCCTTTTTCAAAC 59.542 41.667 0.00 0.00 0.00 2.93
146 147 4.658063 TCTTATCCGCCTCCTTTTTCAAA 58.342 39.130 0.00 0.00 0.00 2.69
147 148 4.295141 TCTTATCCGCCTCCTTTTTCAA 57.705 40.909 0.00 0.00 0.00 2.69
148 149 3.992943 TCTTATCCGCCTCCTTTTTCA 57.007 42.857 0.00 0.00 0.00 2.69
149 150 3.003793 GCATCTTATCCGCCTCCTTTTTC 59.996 47.826 0.00 0.00 0.00 2.29
150 151 2.952310 GCATCTTATCCGCCTCCTTTTT 59.048 45.455 0.00 0.00 0.00 1.94
151 152 2.576615 GCATCTTATCCGCCTCCTTTT 58.423 47.619 0.00 0.00 0.00 2.27
152 153 1.541233 CGCATCTTATCCGCCTCCTTT 60.541 52.381 0.00 0.00 0.00 3.11
153 154 0.034059 CGCATCTTATCCGCCTCCTT 59.966 55.000 0.00 0.00 0.00 3.36
154 155 1.668294 CGCATCTTATCCGCCTCCT 59.332 57.895 0.00 0.00 0.00 3.69
155 156 1.374758 CCGCATCTTATCCGCCTCC 60.375 63.158 0.00 0.00 0.00 4.30
156 157 2.029844 GCCGCATCTTATCCGCCTC 61.030 63.158 0.00 0.00 0.00 4.70
157 158 2.031163 GCCGCATCTTATCCGCCT 59.969 61.111 0.00 0.00 0.00 5.52
158 159 2.031163 AGCCGCATCTTATCCGCC 59.969 61.111 0.00 0.00 0.00 6.13
159 160 2.320587 CCAGCCGCATCTTATCCGC 61.321 63.158 0.00 0.00 0.00 5.54
160 161 0.249868 TTCCAGCCGCATCTTATCCG 60.250 55.000 0.00 0.00 0.00 4.18
161 162 1.808945 CATTCCAGCCGCATCTTATCC 59.191 52.381 0.00 0.00 0.00 2.59
162 163 1.198637 GCATTCCAGCCGCATCTTATC 59.801 52.381 0.00 0.00 0.00 1.75
163 164 1.242076 GCATTCCAGCCGCATCTTAT 58.758 50.000 0.00 0.00 0.00 1.73
164 165 1.159713 CGCATTCCAGCCGCATCTTA 61.160 55.000 0.00 0.00 0.00 2.10
165 166 2.475466 CGCATTCCAGCCGCATCTT 61.475 57.895 0.00 0.00 0.00 2.40
166 167 2.898840 CGCATTCCAGCCGCATCT 60.899 61.111 0.00 0.00 0.00 2.90
167 168 3.173390 GACGCATTCCAGCCGCATC 62.173 63.158 0.00 0.00 0.00 3.91
168 169 3.204827 GACGCATTCCAGCCGCAT 61.205 61.111 0.00 0.00 0.00 4.73
202 203 1.102978 ATTTCTACAATGCGGTGGCC 58.897 50.000 0.00 0.00 38.85 5.36
203 204 1.202290 CCATTTCTACAATGCGGTGGC 60.202 52.381 0.00 0.00 40.52 5.01
204 205 1.202290 GCCATTTCTACAATGCGGTGG 60.202 52.381 0.00 0.00 0.00 4.61
205 206 1.202290 GGCCATTTCTACAATGCGGTG 60.202 52.381 0.00 0.00 0.00 4.94
206 207 1.102978 GGCCATTTCTACAATGCGGT 58.897 50.000 0.00 0.00 0.00 5.68
207 208 0.385390 GGGCCATTTCTACAATGCGG 59.615 55.000 4.39 0.00 0.00 5.69
208 209 0.029300 CGGGCCATTTCTACAATGCG 59.971 55.000 4.39 0.00 0.00 4.73
209 210 0.385390 CCGGGCCATTTCTACAATGC 59.615 55.000 4.39 0.00 0.00 3.56
210 211 1.676006 GTCCGGGCCATTTCTACAATG 59.324 52.381 4.39 0.00 0.00 2.82
211 212 1.283613 TGTCCGGGCCATTTCTACAAT 59.716 47.619 2.12 0.00 0.00 2.71
212 213 0.693622 TGTCCGGGCCATTTCTACAA 59.306 50.000 2.12 0.00 0.00 2.41
213 214 0.035820 GTGTCCGGGCCATTTCTACA 60.036 55.000 2.12 0.00 0.00 2.74
214 215 1.087771 CGTGTCCGGGCCATTTCTAC 61.088 60.000 2.12 0.00 0.00 2.59
215 216 1.219664 CGTGTCCGGGCCATTTCTA 59.780 57.895 2.12 0.00 0.00 2.10
216 217 1.910580 ATCGTGTCCGGGCCATTTCT 61.911 55.000 2.12 0.00 33.95 2.52
217 218 1.436983 GATCGTGTCCGGGCCATTTC 61.437 60.000 2.12 0.00 33.95 2.17
218 219 1.451387 GATCGTGTCCGGGCCATTT 60.451 57.895 2.12 0.00 33.95 2.32
219 220 2.189521 GATCGTGTCCGGGCCATT 59.810 61.111 2.12 0.00 33.95 3.16
220 221 2.764128 AGATCGTGTCCGGGCCAT 60.764 61.111 2.12 0.00 33.95 4.40
221 222 3.458163 GAGATCGTGTCCGGGCCA 61.458 66.667 2.12 0.00 33.95 5.36
222 223 2.311688 AATGAGATCGTGTCCGGGCC 62.312 60.000 2.12 0.00 33.95 5.80
223 224 1.144057 AATGAGATCGTGTCCGGGC 59.856 57.895 0.00 0.00 33.95 6.13
224 225 0.175760 ACAATGAGATCGTGTCCGGG 59.824 55.000 0.00 0.00 33.95 5.73
225 226 1.560923 GACAATGAGATCGTGTCCGG 58.439 55.000 0.00 0.00 33.95 5.14
226 227 1.560923 GGACAATGAGATCGTGTCCG 58.439 55.000 18.74 0.00 39.46 4.79
227 228 2.969628 AGGACAATGAGATCGTGTCC 57.030 50.000 22.84 22.84 46.75 4.02
228 229 3.190874 GGAAGGACAATGAGATCGTGTC 58.809 50.000 11.25 11.25 0.00 3.67
229 230 2.093447 GGGAAGGACAATGAGATCGTGT 60.093 50.000 0.00 0.00 0.00 4.49
230 231 2.093500 TGGGAAGGACAATGAGATCGTG 60.093 50.000 0.00 0.00 0.00 4.35
231 232 2.187958 TGGGAAGGACAATGAGATCGT 58.812 47.619 0.00 0.00 0.00 3.73
232 233 2.988010 TGGGAAGGACAATGAGATCG 57.012 50.000 0.00 0.00 0.00 3.69
233 234 4.335416 TGTTTGGGAAGGACAATGAGATC 58.665 43.478 0.00 0.00 0.00 2.75
234 235 4.043310 TCTGTTTGGGAAGGACAATGAGAT 59.957 41.667 0.00 0.00 0.00 2.75
235 236 3.394274 TCTGTTTGGGAAGGACAATGAGA 59.606 43.478 0.00 0.00 0.00 3.27
236 237 3.503748 GTCTGTTTGGGAAGGACAATGAG 59.496 47.826 0.00 0.00 0.00 2.90
237 238 3.117701 TGTCTGTTTGGGAAGGACAATGA 60.118 43.478 0.00 0.00 34.58 2.57
238 239 3.221771 TGTCTGTTTGGGAAGGACAATG 58.778 45.455 0.00 0.00 34.58 2.82
239 240 3.138283 TCTGTCTGTTTGGGAAGGACAAT 59.862 43.478 0.00 0.00 36.65 2.71
240 241 2.507886 TCTGTCTGTTTGGGAAGGACAA 59.492 45.455 0.00 0.00 36.65 3.18
241 242 2.123589 TCTGTCTGTTTGGGAAGGACA 58.876 47.619 0.00 0.00 35.90 4.02
242 243 2.930826 TCTGTCTGTTTGGGAAGGAC 57.069 50.000 0.00 0.00 0.00 3.85
243 244 4.104738 AGAATTCTGTCTGTTTGGGAAGGA 59.895 41.667 7.30 0.00 0.00 3.36
244 245 4.217118 CAGAATTCTGTCTGTTTGGGAAGG 59.783 45.833 24.65 0.00 40.22 3.46
245 246 4.217118 CCAGAATTCTGTCTGTTTGGGAAG 59.783 45.833 29.03 9.34 43.02 3.46
246 247 4.144297 CCAGAATTCTGTCTGTTTGGGAA 58.856 43.478 29.03 0.00 43.02 3.97
247 248 3.754965 CCAGAATTCTGTCTGTTTGGGA 58.245 45.455 29.03 0.00 43.02 4.37
248 249 2.229784 GCCAGAATTCTGTCTGTTTGGG 59.770 50.000 29.03 14.72 43.02 4.12
249 250 2.229784 GGCCAGAATTCTGTCTGTTTGG 59.770 50.000 29.03 16.08 43.02 3.28
250 251 2.886523 TGGCCAGAATTCTGTCTGTTTG 59.113 45.455 29.03 15.66 43.02 2.93
251 252 3.228188 TGGCCAGAATTCTGTCTGTTT 57.772 42.857 29.03 0.00 43.02 2.83
252 253 2.957402 TGGCCAGAATTCTGTCTGTT 57.043 45.000 29.03 0.00 43.02 3.16
253 254 2.957402 TTGGCCAGAATTCTGTCTGT 57.043 45.000 29.03 0.00 43.02 3.41
254 255 5.065731 GTCTATTTGGCCAGAATTCTGTCTG 59.934 44.000 29.03 17.55 43.98 3.51
255 256 5.189180 GTCTATTTGGCCAGAATTCTGTCT 58.811 41.667 29.03 7.79 42.27 3.41
256 257 4.034510 CGTCTATTTGGCCAGAATTCTGTC 59.965 45.833 29.03 19.83 42.27 3.51
257 258 3.941483 CGTCTATTTGGCCAGAATTCTGT 59.059 43.478 29.03 15.09 42.27 3.41
258 259 3.941483 ACGTCTATTTGGCCAGAATTCTG 59.059 43.478 25.75 25.75 43.40 3.02
259 260 4.192317 GACGTCTATTTGGCCAGAATTCT 58.808 43.478 5.11 0.88 0.00 2.40
260 261 3.312697 GGACGTCTATTTGGCCAGAATTC 59.687 47.826 16.46 0.00 0.00 2.17
261 262 3.279434 GGACGTCTATTTGGCCAGAATT 58.721 45.455 16.46 0.00 0.00 2.17
262 263 2.741878 CGGACGTCTATTTGGCCAGAAT 60.742 50.000 16.46 11.58 0.00 2.40
263 264 1.404986 CGGACGTCTATTTGGCCAGAA 60.405 52.381 16.46 4.01 0.00 3.02
264 265 0.174845 CGGACGTCTATTTGGCCAGA 59.825 55.000 16.46 0.08 0.00 3.86
265 266 0.108329 ACGGACGTCTATTTGGCCAG 60.108 55.000 16.46 0.00 0.00 4.85
266 267 0.322322 AACGGACGTCTATTTGGCCA 59.678 50.000 16.46 0.00 0.00 5.36
267 268 1.129811 CAAACGGACGTCTATTTGGCC 59.870 52.381 25.03 0.00 0.00 5.36
268 269 1.129811 CCAAACGGACGTCTATTTGGC 59.870 52.381 32.22 11.78 43.29 4.52
270 271 1.735571 CCCCAAACGGACGTCTATTTG 59.264 52.381 25.44 25.44 32.89 2.32
271 272 1.348696 ACCCCAAACGGACGTCTATTT 59.651 47.619 16.46 12.96 0.00 1.40
272 273 0.978907 ACCCCAAACGGACGTCTATT 59.021 50.000 16.46 7.26 0.00 1.73
273 274 0.533951 GACCCCAAACGGACGTCTAT 59.466 55.000 16.46 0.35 0.00 1.98
274 275 0.827089 TGACCCCAAACGGACGTCTA 60.827 55.000 16.46 0.00 0.00 2.59
275 276 1.477685 ATGACCCCAAACGGACGTCT 61.478 55.000 16.46 0.00 0.00 4.18
276 277 1.004200 ATGACCCCAAACGGACGTC 60.004 57.895 7.13 7.13 0.00 4.34
277 278 1.302192 CATGACCCCAAACGGACGT 60.302 57.895 0.00 0.00 0.00 4.34
278 279 2.686816 GCATGACCCCAAACGGACG 61.687 63.158 0.00 0.00 0.00 4.79
279 280 2.686816 CGCATGACCCCAAACGGAC 61.687 63.158 0.00 0.00 0.00 4.79
280 281 2.359354 CGCATGACCCCAAACGGA 60.359 61.111 0.00 0.00 0.00 4.69
281 282 4.114997 GCGCATGACCCCAAACGG 62.115 66.667 0.30 0.00 0.00 4.44
282 283 3.055719 AGCGCATGACCCCAAACG 61.056 61.111 11.47 0.00 0.00 3.60
283 284 2.568090 CAGCGCATGACCCCAAAC 59.432 61.111 11.47 0.00 0.00 2.93
284 285 2.676121 CCAGCGCATGACCCCAAA 60.676 61.111 11.47 0.00 0.00 3.28
285 286 3.626996 CTCCAGCGCATGACCCCAA 62.627 63.158 11.47 0.00 0.00 4.12
286 287 4.100084 CTCCAGCGCATGACCCCA 62.100 66.667 11.47 0.00 0.00 4.96
287 288 3.628646 AACTCCAGCGCATGACCCC 62.629 63.158 11.47 0.00 0.00 4.95
288 289 2.045926 AACTCCAGCGCATGACCC 60.046 61.111 11.47 0.00 0.00 4.46
289 290 2.401766 CCAACTCCAGCGCATGACC 61.402 63.158 11.47 0.00 0.00 4.02
290 291 3.044059 GCCAACTCCAGCGCATGAC 62.044 63.158 11.47 0.00 0.00 3.06
291 292 2.747460 GCCAACTCCAGCGCATGA 60.747 61.111 11.47 4.13 0.00 3.07
292 293 2.874648 TAGGCCAACTCCAGCGCATG 62.875 60.000 11.47 4.88 0.00 4.06
293 294 2.599645 CTAGGCCAACTCCAGCGCAT 62.600 60.000 11.47 0.00 0.00 4.73
294 295 3.315142 CTAGGCCAACTCCAGCGCA 62.315 63.158 11.47 0.00 0.00 6.09
295 296 2.512515 CTAGGCCAACTCCAGCGC 60.513 66.667 5.01 0.00 0.00 5.92
296 297 2.512515 GCTAGGCCAACTCCAGCG 60.513 66.667 5.01 0.00 0.00 5.18
297 298 0.394899 AATGCTAGGCCAACTCCAGC 60.395 55.000 5.01 3.98 33.68 4.85
298 299 1.386533 CAATGCTAGGCCAACTCCAG 58.613 55.000 5.01 0.00 0.00 3.86
299 300 0.034186 CCAATGCTAGGCCAACTCCA 60.034 55.000 5.01 0.00 0.00 3.86
300 301 1.387295 GCCAATGCTAGGCCAACTCC 61.387 60.000 5.01 0.00 46.50 3.85
301 302 2.110296 GCCAATGCTAGGCCAACTC 58.890 57.895 5.01 0.00 46.50 3.01
302 303 4.344237 GCCAATGCTAGGCCAACT 57.656 55.556 5.01 0.00 46.50 3.16
308 309 0.475475 TGGGAGATGCCAATGCTAGG 59.525 55.000 0.00 0.00 38.95 3.02
309 310 2.353357 TTGGGAGATGCCAATGCTAG 57.647 50.000 1.14 0.00 38.95 3.42
310 311 4.662966 ATATTGGGAGATGCCAATGCTA 57.337 40.909 24.07 8.77 37.26 3.49
311 312 3.537795 ATATTGGGAGATGCCAATGCT 57.462 42.857 24.07 11.56 37.26 3.79
329 330 7.464273 AGAAACATGCCTGAATCCATCATATA 58.536 34.615 0.00 0.00 37.44 0.86
341 342 1.704628 TCTTGGGAGAAACATGCCTGA 59.295 47.619 0.00 0.00 0.00 3.86
342 343 2.205022 TCTTGGGAGAAACATGCCTG 57.795 50.000 0.00 0.00 0.00 4.85
343 344 2.800250 CTTCTTGGGAGAAACATGCCT 58.200 47.619 0.00 0.00 41.19 4.75
344 345 1.203287 GCTTCTTGGGAGAAACATGCC 59.797 52.381 0.00 0.00 41.19 4.40
359 364 3.056938 ACGCTCTCGACCGCTTCT 61.057 61.111 0.41 0.00 39.41 2.85
434 439 2.365617 ACGTTGGAGGCATCTACCTATG 59.634 50.000 0.00 0.00 41.32 2.23
435 440 2.628657 GACGTTGGAGGCATCTACCTAT 59.371 50.000 0.00 0.00 41.32 2.57
436 441 2.029623 GACGTTGGAGGCATCTACCTA 58.970 52.381 0.00 0.00 41.32 3.08
437 442 0.824759 GACGTTGGAGGCATCTACCT 59.175 55.000 0.00 0.00 45.04 3.08
496 521 4.421479 CGCTTGCGGGTCGAGTCT 62.421 66.667 7.16 0.00 0.00 3.24
504 529 4.404654 GCTTTGGACGCTTGCGGG 62.405 66.667 19.19 3.62 0.00 6.13
525 551 2.251642 GCTTGTCGCCCTTCGTGTT 61.252 57.895 0.00 0.00 39.67 3.32
526 552 2.665185 GCTTGTCGCCCTTCGTGT 60.665 61.111 0.00 0.00 39.67 4.49
546 572 2.261671 GACGGCGTCCATGTCACT 59.738 61.111 28.72 0.00 32.91 3.41
547 573 3.179265 CGACGGCGTCCATGTCAC 61.179 66.667 31.86 7.74 32.91 3.67
624 650 2.111756 CTGTTCGTTTGTTTGCTGCTC 58.888 47.619 0.00 0.00 0.00 4.26
625 651 1.742831 TCTGTTCGTTTGTTTGCTGCT 59.257 42.857 0.00 0.00 0.00 4.24
627 653 4.165779 ACTTTCTGTTCGTTTGTTTGCTG 58.834 39.130 0.00 0.00 0.00 4.41
630 656 5.627172 TCTGACTTTCTGTTCGTTTGTTTG 58.373 37.500 0.00 0.00 0.00 2.93
631 657 5.873179 TCTGACTTTCTGTTCGTTTGTTT 57.127 34.783 0.00 0.00 0.00 2.83
633 659 5.411669 AGTTTCTGACTTTCTGTTCGTTTGT 59.588 36.000 0.00 0.00 33.92 2.83
761 797 2.355412 GGCCCGGTTCACATTTAGTAGT 60.355 50.000 0.00 0.00 0.00 2.73
765 801 1.373590 CCGGCCCGGTTCACATTTAG 61.374 60.000 15.86 0.00 42.73 1.85
908 947 3.473625 GAATTTATACGGAGGTGTGGGG 58.526 50.000 0.00 0.00 0.00 4.96
967 1006 2.256591 GGCTGTGGTCTGCTGTGTG 61.257 63.158 0.00 0.00 38.34 3.82
968 1007 2.111878 GGCTGTGGTCTGCTGTGT 59.888 61.111 0.00 0.00 38.34 3.72
1132 1184 2.750657 CCAGCATCTCTCCACCCCC 61.751 68.421 0.00 0.00 0.00 5.40
1133 1185 2.914289 CCAGCATCTCTCCACCCC 59.086 66.667 0.00 0.00 0.00 4.95
1134 1186 2.191641 GCCAGCATCTCTCCACCC 59.808 66.667 0.00 0.00 0.00 4.61
1135 1187 2.202987 CGCCAGCATCTCTCCACC 60.203 66.667 0.00 0.00 0.00 4.61
1136 1188 2.894387 GCGCCAGCATCTCTCCAC 60.894 66.667 0.00 0.00 44.35 4.02
1416 1508 5.570439 GCATGAAGAAGAAGAGGAAGGAGAA 60.570 44.000 0.00 0.00 0.00 2.87
1420 1512 3.277715 GGCATGAAGAAGAAGAGGAAGG 58.722 50.000 0.00 0.00 0.00 3.46
1426 1518 0.740868 CGGCGGCATGAAGAAGAAGA 60.741 55.000 10.53 0.00 0.00 2.87
1434 1531 2.745884 CCAAGACGGCGGCATGAA 60.746 61.111 20.95 0.00 0.00 2.57
1444 1543 1.566018 GCGGGAAAGACACCAAGACG 61.566 60.000 0.00 0.00 0.00 4.18
1543 1661 0.574454 GAATTAGCAGAGCGCAGACG 59.426 55.000 11.47 0.00 46.13 4.18
1549 1667 5.475273 TGAATTGAAGAATTAGCAGAGCG 57.525 39.130 0.00 0.00 31.58 5.03
1555 1673 6.501781 CAGGACCATGAATTGAAGAATTAGC 58.498 40.000 0.00 0.00 31.58 3.09
1556 1674 6.095860 TGCAGGACCATGAATTGAAGAATTAG 59.904 38.462 0.00 0.00 31.58 1.73
1558 1676 4.773674 TGCAGGACCATGAATTGAAGAATT 59.226 37.500 0.00 0.00 34.29 2.17
1647 1768 2.511659 ACAAATGCAGCAGACATCAGT 58.488 42.857 0.00 0.00 0.00 3.41
1746 1867 9.154632 ACCATGTTTACTACTGGACATATATGA 57.845 33.333 19.63 0.00 31.92 2.15
1747 1868 9.778741 AACCATGTTTACTACTGGACATATATG 57.221 33.333 11.29 11.29 31.92 1.78
2218 2741 6.040842 ACATTTGAGTAAAAGTGCCAAGATGT 59.959 34.615 0.00 0.00 0.00 3.06
2219 2742 6.449698 ACATTTGAGTAAAAGTGCCAAGATG 58.550 36.000 0.00 0.00 0.00 2.90
2246 2769 5.788450 AGCCCTATAGAAAGACATTGATCG 58.212 41.667 0.00 0.00 0.00 3.69
2406 2946 3.391626 ACATGACATGCCTGATGATCTCT 59.608 43.478 15.49 0.00 35.80 3.10
2754 3294 0.885196 GGAGCTCGACAGTCTCACTT 59.115 55.000 7.83 0.00 0.00 3.16
2877 3417 7.992180 AATCAATTTCGATTTTCAGGTATGC 57.008 32.000 0.00 0.00 31.45 3.14
2893 3433 5.245584 ACCAATGGCCTGAAAATCAATTT 57.754 34.783 3.32 0.00 0.00 1.82
2914 3454 3.884169 TGCAATGAAACGAAGCAAGTAC 58.116 40.909 0.00 0.00 31.42 2.73
2925 3465 5.112220 TCATCAGTCAGTTGCAATGAAAC 57.888 39.130 0.59 0.00 0.00 2.78
2956 3496 0.109226 CCGTCGACCTGTTTCTCTCC 60.109 60.000 10.58 0.00 0.00 3.71
3226 3775 5.163385 CCAATTTGGATGTAATGCCACTGAT 60.163 40.000 10.03 0.00 40.96 2.90
3246 3795 2.283145 AACTGAACTGAGCAGCCAAT 57.717 45.000 0.00 0.00 36.86 3.16
3248 3797 1.311859 CAAACTGAACTGAGCAGCCA 58.688 50.000 0.00 0.00 36.86 4.75
3250 3799 0.950116 AGCAAACTGAACTGAGCAGC 59.050 50.000 0.00 0.00 36.86 5.25
3325 3881 2.492484 AGAGGTACTAACAGCCGTTCAG 59.508 50.000 0.00 0.00 41.55 3.02
3346 3902 8.445361 AGGAAGAACTATGGAAAAACCTACTA 57.555 34.615 0.00 0.00 39.86 1.82
3374 3932 6.992063 TCTCAGGAAAAATAACAGAGATGC 57.008 37.500 0.00 0.00 0.00 3.91
3376 3934 9.393512 CTTCATCTCAGGAAAAATAACAGAGAT 57.606 33.333 0.00 0.00 40.79 2.75
3377 3935 7.826252 CCTTCATCTCAGGAAAAATAACAGAGA 59.174 37.037 0.00 0.00 35.42 3.10
3378 3936 7.609532 ACCTTCATCTCAGGAAAAATAACAGAG 59.390 37.037 0.00 0.00 35.14 3.35
3382 3947 7.886338 ACAACCTTCATCTCAGGAAAAATAAC 58.114 34.615 0.00 0.00 35.14 1.89
3469 4035 2.169832 AACAGGGACATCACAAGACG 57.830 50.000 0.00 0.00 0.00 4.18
3503 4070 1.381191 AAATCATTCCCGGGGGTGC 60.381 57.895 23.50 0.00 36.47 5.01
3530 4101 0.321564 TGCCGTTCAACATCTCCAGG 60.322 55.000 0.00 0.00 0.00 4.45
3546 4119 0.177141 ATTGATGCCACATTGCTGCC 59.823 50.000 0.00 0.00 0.00 4.85
3549 4122 1.404986 GCACATTGATGCCACATTGCT 60.405 47.619 0.00 0.00 39.86 3.91
3603 4180 0.104882 TACCCCCTCCAACACACTGA 60.105 55.000 0.00 0.00 0.00 3.41
3619 4196 5.822519 TGGCAGTAAATGAATCATCACTACC 59.177 40.000 15.21 15.21 38.69 3.18
3815 4395 1.403514 GCCTCGGTCTTCACTCTTCAG 60.404 57.143 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.