Multiple sequence alignment - TraesCS4D01G076100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G076100 chr4D 100.000 2897 0 0 1 2897 50756931 50759827 0.000000e+00 5350
1 TraesCS4D01G076100 chr4D 92.090 177 13 1 2721 2897 495993217 495993042 6.200000e-62 248
2 TraesCS4D01G076100 chr4B 89.831 1780 116 24 390 2158 74670400 74672125 0.000000e+00 2224
3 TraesCS4D01G076100 chr4B 94.906 373 12 1 1 373 74670051 74670416 6.960000e-161 577
4 TraesCS4D01G076100 chr4A 93.145 992 67 1 1022 2012 546257309 546256318 0.000000e+00 1454
5 TraesCS4D01G076100 chr4A 85.043 936 69 30 1 934 546258176 546257310 0.000000e+00 887
6 TraesCS4D01G076100 chr3D 93.785 177 9 2 2721 2897 547460541 547460715 6.160000e-67 265
7 TraesCS4D01G076100 chr7A 93.143 175 10 2 2721 2895 306273779 306273607 3.700000e-64 255
8 TraesCS4D01G076100 chr2D 92.655 177 13 0 2721 2897 643243915 643243739 3.700000e-64 255
9 TraesCS4D01G076100 chr2D 92.571 175 12 1 2721 2895 60954759 60954932 1.720000e-62 250
10 TraesCS4D01G076100 chr5B 92.655 177 12 1 2721 2897 691597719 691597544 1.330000e-63 254
11 TraesCS4D01G076100 chr5D 92.090 177 13 1 2721 2897 242648495 242648320 6.200000e-62 248
12 TraesCS4D01G076100 chr5D 92.090 177 13 1 2721 2897 353462806 353462981 6.200000e-62 248
13 TraesCS4D01G076100 chr1D 92.090 177 13 1 2721 2897 217292982 217293157 6.200000e-62 248


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G076100 chr4D 50756931 50759827 2896 False 5350.0 5350 100.0000 1 2897 1 chr4D.!!$F1 2896
1 TraesCS4D01G076100 chr4B 74670051 74672125 2074 False 1400.5 2224 92.3685 1 2158 2 chr4B.!!$F1 2157
2 TraesCS4D01G076100 chr4A 546256318 546258176 1858 True 1170.5 1454 89.0940 1 2012 2 chr4A.!!$R1 2011

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 366 0.250945 TAATGGTGCGAAAGGTGCCA 60.251 50.0 0.0 0.0 0.0 4.92 F
1240 1258 0.234106 CTTCAGCACAAGACACAGCG 59.766 55.0 0.0 0.0 0.0 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 1913 0.034059 CGCCCTGCTAATACTCCAGG 59.966 60.0 0.0 0.0 44.49 4.45 R
2174 2210 0.037326 TTGGTCTAGCAAGCACGAGG 60.037 55.0 0.0 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 3.058341 TGATCCCTCATCATGATTGGGT 58.942 45.455 29.01 21.13 36.51 4.51
59 60 4.437682 TCCCTCATCATGATTGGGTTAC 57.562 45.455 29.01 0.00 38.95 2.50
244 245 6.657541 AGGTGTCATTTTACATTTCATACGGT 59.342 34.615 0.00 0.00 0.00 4.83
257 258 9.016438 ACATTTCATACGGTGTTACCTATTTTT 57.984 29.630 0.00 0.00 35.66 1.94
356 366 0.250945 TAATGGTGCGAAAGGTGCCA 60.251 50.000 0.00 0.00 0.00 4.92
357 367 1.112315 AATGGTGCGAAAGGTGCCAA 61.112 50.000 0.00 0.00 32.54 4.52
358 368 1.526575 ATGGTGCGAAAGGTGCCAAG 61.527 55.000 0.00 0.00 32.54 3.61
359 369 2.644992 GTGCGAAAGGTGCCAAGG 59.355 61.111 0.00 0.00 0.00 3.61
360 370 2.193536 GTGCGAAAGGTGCCAAGGT 61.194 57.895 0.00 0.00 0.00 3.50
361 371 2.192861 TGCGAAAGGTGCCAAGGTG 61.193 57.895 0.00 0.00 0.00 4.00
362 372 2.193536 GCGAAAGGTGCCAAGGTGT 61.194 57.895 0.00 0.00 0.00 4.16
363 373 1.949257 CGAAAGGTGCCAAGGTGTC 59.051 57.895 0.00 0.00 0.00 3.67
364 374 1.841663 CGAAAGGTGCCAAGGTGTCG 61.842 60.000 0.00 0.00 0.00 4.35
365 375 0.818040 GAAAGGTGCCAAGGTGTCGT 60.818 55.000 0.00 0.00 0.00 4.34
366 376 0.470766 AAAGGTGCCAAGGTGTCGTA 59.529 50.000 0.00 0.00 0.00 3.43
367 377 0.470766 AAGGTGCCAAGGTGTCGTAA 59.529 50.000 0.00 0.00 0.00 3.18
368 378 0.470766 AGGTGCCAAGGTGTCGTAAA 59.529 50.000 0.00 0.00 0.00 2.01
369 379 1.134037 AGGTGCCAAGGTGTCGTAAAA 60.134 47.619 0.00 0.00 0.00 1.52
370 380 1.002142 GGTGCCAAGGTGTCGTAAAAC 60.002 52.381 0.00 0.00 0.00 2.43
371 381 1.671845 GTGCCAAGGTGTCGTAAAACA 59.328 47.619 0.00 0.00 0.00 2.83
372 382 2.097791 GTGCCAAGGTGTCGTAAAACAA 59.902 45.455 0.00 0.00 0.00 2.83
373 383 2.952978 TGCCAAGGTGTCGTAAAACAAT 59.047 40.909 0.00 0.00 0.00 2.71
374 384 3.381908 TGCCAAGGTGTCGTAAAACAATT 59.618 39.130 0.00 0.00 0.00 2.32
375 385 4.142138 TGCCAAGGTGTCGTAAAACAATTT 60.142 37.500 0.00 0.00 0.00 1.82
376 386 4.443063 GCCAAGGTGTCGTAAAACAATTTC 59.557 41.667 0.00 0.00 0.00 2.17
377 387 4.673311 CCAAGGTGTCGTAAAACAATTTCG 59.327 41.667 0.00 0.00 0.00 3.46
378 388 3.880610 AGGTGTCGTAAAACAATTTCGC 58.119 40.909 0.00 0.00 0.00 4.70
379 389 3.312973 AGGTGTCGTAAAACAATTTCGCA 59.687 39.130 0.00 0.00 0.00 5.10
380 390 4.036352 GGTGTCGTAAAACAATTTCGCAA 58.964 39.130 0.00 0.00 0.00 4.85
381 391 4.499758 GGTGTCGTAAAACAATTTCGCAAA 59.500 37.500 0.00 0.00 0.00 3.68
382 392 5.004535 GGTGTCGTAAAACAATTTCGCAAAA 59.995 36.000 0.00 0.00 0.00 2.44
383 393 6.453922 GGTGTCGTAAAACAATTTCGCAAAAA 60.454 34.615 0.00 0.00 0.00 1.94
468 479 2.372264 ACTGCTATGTGCCTTTCATGG 58.628 47.619 0.00 0.00 42.00 3.66
510 522 7.754027 GCTCCAATATTTAATGATCAGTGCATC 59.246 37.037 5.80 0.00 0.00 3.91
567 579 9.011095 CATGATCATCATAAGATATATTGGCCC 57.989 37.037 4.86 0.00 34.28 5.80
611 623 6.313905 CGCCTATCTTTTGTCAGTACAAGAAT 59.686 38.462 0.00 0.00 45.99 2.40
699 711 0.602562 GAGTCTGCTGAGCTGTGAGT 59.397 55.000 5.83 4.42 0.00 3.41
708 720 3.118956 GCTGAGCTGTGAGTATGTAACCT 60.119 47.826 0.00 0.00 0.00 3.50
737 749 2.937591 CAGTGCACTGCAACTAATTGG 58.062 47.619 32.39 5.96 41.47 3.16
754 766 8.353423 ACTAATTGGAAAGATGTGCAGTTTAT 57.647 30.769 0.00 0.00 0.00 1.40
755 767 9.461312 ACTAATTGGAAAGATGTGCAGTTTATA 57.539 29.630 0.00 0.00 0.00 0.98
766 782 5.237815 TGTGCAGTTTATACTTCTGTGAGG 58.762 41.667 0.00 0.00 30.26 3.86
826 842 8.578151 GTTTTATGTTTGACCAGTAAACCCATA 58.422 33.333 0.00 0.00 37.25 2.74
883 899 2.484264 ACTAAATGCTTCCGTTGCAGAC 59.516 45.455 0.00 0.00 44.04 3.51
899 915 3.769300 TGCAGACCTTCTAGACATGCTTA 59.231 43.478 12.37 0.00 33.47 3.09
902 918 5.347342 CAGACCTTCTAGACATGCTTAGTG 58.653 45.833 0.00 0.00 0.00 2.74
903 919 5.126222 CAGACCTTCTAGACATGCTTAGTGA 59.874 44.000 0.00 0.00 0.00 3.41
944 960 5.763204 TGTTTTTACATTCTTTCTCTCGCCT 59.237 36.000 0.00 0.00 0.00 5.52
945 961 6.262273 TGTTTTTACATTCTTTCTCTCGCCTT 59.738 34.615 0.00 0.00 0.00 4.35
946 962 6.877611 TTTTACATTCTTTCTCTCGCCTTT 57.122 33.333 0.00 0.00 0.00 3.11
947 963 6.481954 TTTACATTCTTTCTCTCGCCTTTC 57.518 37.500 0.00 0.00 0.00 2.62
1072 1090 8.356657 CAGTACCAACTTTTGTGAAATATTGGA 58.643 33.333 15.99 4.21 40.23 3.53
1076 1094 7.872483 ACCAACTTTTGTGAAATATTGGACATC 59.128 33.333 15.99 0.00 40.23 3.06
1117 1135 4.633565 GTGACTCTGGATTGTGGATTTCTC 59.366 45.833 0.00 0.00 0.00 2.87
1130 1148 6.916440 TGTGGATTTCTCATCTGTCAATTTG 58.084 36.000 0.00 0.00 0.00 2.32
1132 1150 7.025963 GTGGATTTCTCATCTGTCAATTTGTC 58.974 38.462 0.00 0.00 0.00 3.18
1153 1171 4.631813 GTCTAACACAGGGCTATGAAGTTG 59.368 45.833 12.08 0.00 0.00 3.16
1163 1181 4.000988 GGCTATGAAGTTGTTCGAGGAAA 58.999 43.478 0.00 0.00 35.17 3.13
1169 1187 3.771577 AGTTGTTCGAGGAAACCAGAT 57.228 42.857 4.03 0.00 0.00 2.90
1177 1195 2.099263 CGAGGAAACCAGATAGAGCGAA 59.901 50.000 0.00 0.00 0.00 4.70
1206 1224 2.390427 CGGAAGCATAACGGAACCC 58.610 57.895 0.00 0.00 0.00 4.11
1240 1258 0.234106 CTTCAGCACAAGACACAGCG 59.766 55.000 0.00 0.00 0.00 5.18
1241 1259 1.775039 TTCAGCACAAGACACAGCGC 61.775 55.000 0.00 0.00 0.00 5.92
1244 1262 2.633657 CACAAGACACAGCGCCAC 59.366 61.111 2.29 0.00 0.00 5.01
1278 1296 1.363744 GACTTCCTGATGCGGTTCAG 58.636 55.000 4.59 4.59 42.31 3.02
1323 1341 1.284198 AGGCTCCGAAGTGTAGACCTA 59.716 52.381 0.00 0.00 0.00 3.08
1327 1345 4.382793 GGCTCCGAAGTGTAGACCTATTTT 60.383 45.833 0.00 0.00 0.00 1.82
1345 1363 2.731691 TTCAGGGAGAAGGTGCGCAC 62.732 60.000 32.15 32.15 0.00 5.34
1355 1373 2.563942 GTGCGCACCGGCATTTAA 59.436 55.556 30.12 0.00 45.99 1.52
1357 1375 1.969064 TGCGCACCGGCATTTAACT 60.969 52.632 5.66 0.00 41.24 2.24
1363 1381 2.151202 CACCGGCATTTAACTCACAGT 58.849 47.619 0.00 0.00 0.00 3.55
1365 1383 1.135689 CCGGCATTTAACTCACAGTGC 60.136 52.381 0.00 0.00 0.00 4.40
1367 1385 2.159653 CGGCATTTAACTCACAGTGCTC 60.160 50.000 0.00 0.00 33.38 4.26
1379 1397 2.995939 CACAGTGCTCGCTCATCTTAAA 59.004 45.455 0.00 0.00 0.00 1.52
1432 1451 1.634973 TGCATTGATCCTCAGTTCCCA 59.365 47.619 0.00 0.00 0.00 4.37
1445 1464 1.076412 TTCCCAGTTGTTGCAGGCA 60.076 52.632 0.00 0.00 0.00 4.75
1450 1469 1.202557 CCAGTTGTTGCAGGCAAACAT 60.203 47.619 8.47 0.00 37.70 2.71
1476 1495 2.489040 CGTAGGAACCATTTGGGCC 58.511 57.895 0.00 0.00 42.05 5.80
1690 1709 2.263077 CTCTCCAAGGAACAATCGACG 58.737 52.381 0.00 0.00 0.00 5.12
1796 1815 3.587797 CTGCAAGCACATCTTCCATTT 57.412 42.857 0.00 0.00 31.27 2.32
1882 1911 3.068307 CCTATCCTACCACGGAAAGAGTG 59.932 52.174 0.00 0.00 36.49 3.51
1883 1912 2.297698 TCCTACCACGGAAAGAGTGA 57.702 50.000 0.00 0.00 41.83 3.41
1884 1913 1.891150 TCCTACCACGGAAAGAGTGAC 59.109 52.381 0.00 0.00 41.83 3.67
1885 1914 1.067071 CCTACCACGGAAAGAGTGACC 60.067 57.143 0.00 0.00 41.83 4.02
1886 1915 1.893801 CTACCACGGAAAGAGTGACCT 59.106 52.381 0.00 0.00 41.83 3.85
1887 1916 0.393077 ACCACGGAAAGAGTGACCTG 59.607 55.000 0.00 0.00 41.83 4.00
1888 1917 0.320771 CCACGGAAAGAGTGACCTGG 60.321 60.000 0.00 0.00 41.83 4.45
1889 1918 0.679505 CACGGAAAGAGTGACCTGGA 59.320 55.000 0.00 0.00 41.83 3.86
1890 1919 0.969894 ACGGAAAGAGTGACCTGGAG 59.030 55.000 0.00 0.00 0.00 3.86
1891 1920 0.969894 CGGAAAGAGTGACCTGGAGT 59.030 55.000 0.00 0.00 0.00 3.85
1918 1947 4.618513 GCGTTGCGGCTTTTGTAA 57.381 50.000 0.00 0.00 0.00 2.41
1919 1948 2.874709 GCGTTGCGGCTTTTGTAAA 58.125 47.368 0.00 0.00 0.00 2.01
1920 1949 1.201343 GCGTTGCGGCTTTTGTAAAA 58.799 45.000 0.00 0.00 0.00 1.52
2023 2056 4.853050 GAGCTGGCCTCGCTGCAT 62.853 66.667 22.15 1.26 37.96 3.96
2067 2100 0.604511 TGCAGTCCTCTGTGCACATG 60.605 55.000 22.00 15.54 44.70 3.21
2068 2101 1.303799 GCAGTCCTCTGTGCACATGG 61.304 60.000 22.00 23.70 43.05 3.66
2070 2103 0.767375 AGTCCTCTGTGCACATGGTT 59.233 50.000 27.45 18.72 0.00 3.67
2074 2107 1.544093 CCTCTGTGCACATGGTTCTGT 60.544 52.381 22.00 0.00 0.00 3.41
2102 2138 3.669251 AACAGTGTTAGAGGCTGACTC 57.331 47.619 6.75 1.11 46.98 3.36
2110 2146 1.877367 GAGGCTGACTCGTCGTTCT 59.123 57.895 0.00 0.00 36.29 3.01
2111 2147 1.085091 GAGGCTGACTCGTCGTTCTA 58.915 55.000 0.00 0.00 36.29 2.10
2112 2148 1.062880 GAGGCTGACTCGTCGTTCTAG 59.937 57.143 0.00 0.00 36.29 2.43
2113 2149 0.803740 GGCTGACTCGTCGTTCTAGT 59.196 55.000 0.00 0.00 0.00 2.57
2114 2150 1.202054 GGCTGACTCGTCGTTCTAGTC 60.202 57.143 5.17 5.17 38.73 2.59
2115 2151 1.733360 GCTGACTCGTCGTTCTAGTCT 59.267 52.381 11.66 0.00 38.93 3.24
2116 2152 2.160022 GCTGACTCGTCGTTCTAGTCTT 59.840 50.000 11.66 0.00 38.93 3.01
2117 2153 3.725600 GCTGACTCGTCGTTCTAGTCTTC 60.726 52.174 11.66 2.41 38.93 2.87
2121 2157 3.001414 CTCGTCGTTCTAGTCTTCCAGA 58.999 50.000 0.00 0.00 0.00 3.86
2124 2160 2.818432 GTCGTTCTAGTCTTCCAGACCA 59.182 50.000 0.09 0.00 46.18 4.02
2127 2163 1.853963 TCTAGTCTTCCAGACCAGGC 58.146 55.000 0.09 0.00 46.18 4.85
2158 2194 0.923358 TCGCCCCAATCCTATTTGGT 59.077 50.000 2.81 0.00 43.92 3.67
2159 2195 2.105821 CTCGCCCCAATCCTATTTGGTA 59.894 50.000 2.81 0.00 43.92 3.25
2160 2196 2.158726 TCGCCCCAATCCTATTTGGTAC 60.159 50.000 2.81 0.00 43.92 3.34
2161 2197 2.227194 GCCCCAATCCTATTTGGTACG 58.773 52.381 2.81 0.00 43.92 3.67
2162 2198 2.227194 CCCCAATCCTATTTGGTACGC 58.773 52.381 2.81 0.00 43.92 4.42
2163 2199 1.871039 CCCAATCCTATTTGGTACGCG 59.129 52.381 3.53 3.53 43.92 6.01
2164 2200 1.871039 CCAATCCTATTTGGTACGCGG 59.129 52.381 12.47 0.00 41.09 6.46
2165 2201 1.263217 CAATCCTATTTGGTACGCGGC 59.737 52.381 12.47 2.06 37.07 6.53
2166 2202 0.599204 ATCCTATTTGGTACGCGGCG 60.599 55.000 22.36 22.36 37.07 6.46
2167 2203 2.624264 CTATTTGGTACGCGGCGC 59.376 61.111 24.21 24.21 0.00 6.53
2168 2204 2.125633 TATTTGGTACGCGGCGCA 60.126 55.556 32.61 10.81 0.00 6.09
2169 2205 2.356093 CTATTTGGTACGCGGCGCAC 62.356 60.000 32.61 22.61 0.00 5.34
2184 2220 2.669569 CACACCCCCTCGTGCTTG 60.670 66.667 0.00 0.00 37.25 4.01
2185 2221 4.643387 ACACCCCCTCGTGCTTGC 62.643 66.667 0.00 0.00 37.25 4.01
2186 2222 4.335647 CACCCCCTCGTGCTTGCT 62.336 66.667 0.00 0.00 0.00 3.91
2187 2223 2.606519 ACCCCCTCGTGCTTGCTA 60.607 61.111 0.00 0.00 0.00 3.49
2188 2224 2.187946 CCCCCTCGTGCTTGCTAG 59.812 66.667 0.00 0.00 0.00 3.42
2189 2225 2.359169 CCCCCTCGTGCTTGCTAGA 61.359 63.158 0.00 0.00 0.00 2.43
2190 2226 1.153549 CCCCTCGTGCTTGCTAGAC 60.154 63.158 0.00 0.00 0.00 2.59
2191 2227 1.153549 CCCTCGTGCTTGCTAGACC 60.154 63.158 0.00 0.00 0.00 3.85
2192 2228 1.591703 CCTCGTGCTTGCTAGACCA 59.408 57.895 0.00 0.00 0.00 4.02
2193 2229 0.037326 CCTCGTGCTTGCTAGACCAA 60.037 55.000 0.00 0.00 0.00 3.67
2194 2230 1.608025 CCTCGTGCTTGCTAGACCAAA 60.608 52.381 0.00 0.00 0.00 3.28
2195 2231 2.350522 CTCGTGCTTGCTAGACCAAAT 58.649 47.619 0.00 0.00 0.00 2.32
2196 2232 3.521560 CTCGTGCTTGCTAGACCAAATA 58.478 45.455 0.00 0.00 0.00 1.40
2197 2233 3.932710 CTCGTGCTTGCTAGACCAAATAA 59.067 43.478 0.00 0.00 0.00 1.40
2198 2234 3.932710 TCGTGCTTGCTAGACCAAATAAG 59.067 43.478 0.00 0.00 0.00 1.73
2199 2235 3.485877 CGTGCTTGCTAGACCAAATAAGC 60.486 47.826 0.00 0.00 40.52 3.09
2200 2236 3.016736 TGCTTGCTAGACCAAATAAGCC 58.983 45.455 0.00 0.00 39.66 4.35
2201 2237 2.032178 GCTTGCTAGACCAAATAAGCCG 59.968 50.000 0.00 0.00 35.68 5.52
2202 2238 1.663695 TGCTAGACCAAATAAGCCGC 58.336 50.000 0.00 0.00 33.99 6.53
2203 2239 0.945099 GCTAGACCAAATAAGCCGCC 59.055 55.000 0.00 0.00 0.00 6.13
2204 2240 1.217882 CTAGACCAAATAAGCCGCCG 58.782 55.000 0.00 0.00 0.00 6.46
2205 2241 0.179067 TAGACCAAATAAGCCGCCGG 60.179 55.000 0.00 0.00 0.00 6.13
2216 2252 3.518068 CCGCCGGCCCATTTCTTC 61.518 66.667 23.46 0.00 0.00 2.87
2217 2253 3.518068 CGCCGGCCCATTTCTTCC 61.518 66.667 23.46 0.00 0.00 3.46
2218 2254 2.043953 GCCGGCCCATTTCTTCCT 60.044 61.111 18.11 0.00 0.00 3.36
2219 2255 2.121538 GCCGGCCCATTTCTTCCTC 61.122 63.158 18.11 0.00 0.00 3.71
2220 2256 1.453928 CCGGCCCATTTCTTCCTCC 60.454 63.158 0.00 0.00 0.00 4.30
2221 2257 1.302949 CGGCCCATTTCTTCCTCCA 59.697 57.895 0.00 0.00 0.00 3.86
2222 2258 1.032114 CGGCCCATTTCTTCCTCCAC 61.032 60.000 0.00 0.00 0.00 4.02
2223 2259 0.332972 GGCCCATTTCTTCCTCCACT 59.667 55.000 0.00 0.00 0.00 4.00
2224 2260 1.467920 GCCCATTTCTTCCTCCACTG 58.532 55.000 0.00 0.00 0.00 3.66
2225 2261 1.272147 GCCCATTTCTTCCTCCACTGT 60.272 52.381 0.00 0.00 0.00 3.55
2226 2262 2.819348 GCCCATTTCTTCCTCCACTGTT 60.819 50.000 0.00 0.00 0.00 3.16
2227 2263 3.500343 CCCATTTCTTCCTCCACTGTTT 58.500 45.455 0.00 0.00 0.00 2.83
2228 2264 3.507622 CCCATTTCTTCCTCCACTGTTTC 59.492 47.826 0.00 0.00 0.00 2.78
2229 2265 4.401925 CCATTTCTTCCTCCACTGTTTCT 58.598 43.478 0.00 0.00 0.00 2.52
2230 2266 4.829492 CCATTTCTTCCTCCACTGTTTCTT 59.171 41.667 0.00 0.00 0.00 2.52
2231 2267 5.302823 CCATTTCTTCCTCCACTGTTTCTTT 59.697 40.000 0.00 0.00 0.00 2.52
2232 2268 6.183360 CCATTTCTTCCTCCACTGTTTCTTTT 60.183 38.462 0.00 0.00 0.00 2.27
2233 2269 6.850752 TTTCTTCCTCCACTGTTTCTTTTT 57.149 33.333 0.00 0.00 0.00 1.94
2234 2270 6.451064 TTCTTCCTCCACTGTTTCTTTTTC 57.549 37.500 0.00 0.00 0.00 2.29
2235 2271 4.574828 TCTTCCTCCACTGTTTCTTTTTCG 59.425 41.667 0.00 0.00 0.00 3.46
2236 2272 3.881220 TCCTCCACTGTTTCTTTTTCGT 58.119 40.909 0.00 0.00 0.00 3.85
2237 2273 4.266714 TCCTCCACTGTTTCTTTTTCGTT 58.733 39.130 0.00 0.00 0.00 3.85
2238 2274 4.703093 TCCTCCACTGTTTCTTTTTCGTTT 59.297 37.500 0.00 0.00 0.00 3.60
2239 2275 5.184287 TCCTCCACTGTTTCTTTTTCGTTTT 59.816 36.000 0.00 0.00 0.00 2.43
2240 2276 5.515270 CCTCCACTGTTTCTTTTTCGTTTTC 59.485 40.000 0.00 0.00 0.00 2.29
2241 2277 6.262193 TCCACTGTTTCTTTTTCGTTTTCT 57.738 33.333 0.00 0.00 0.00 2.52
2242 2278 6.683715 TCCACTGTTTCTTTTTCGTTTTCTT 58.316 32.000 0.00 0.00 0.00 2.52
2243 2279 7.149307 TCCACTGTTTCTTTTTCGTTTTCTTT 58.851 30.769 0.00 0.00 0.00 2.52
2244 2280 7.654116 TCCACTGTTTCTTTTTCGTTTTCTTTT 59.346 29.630 0.00 0.00 0.00 2.27
2245 2281 8.279800 CCACTGTTTCTTTTTCGTTTTCTTTTT 58.720 29.630 0.00 0.00 0.00 1.94
2369 2405 8.795786 TGTGGAACTTATTTCTTTCAAATTCG 57.204 30.769 0.00 0.00 38.04 3.34
2370 2406 7.865385 TGTGGAACTTATTTCTTTCAAATTCGG 59.135 33.333 0.00 0.00 38.04 4.30
2371 2407 7.328493 GTGGAACTTATTTCTTTCAAATTCGGG 59.672 37.037 0.00 0.00 34.26 5.14
2372 2408 7.231722 TGGAACTTATTTCTTTCAAATTCGGGA 59.768 33.333 0.00 0.00 34.26 5.14
2373 2409 8.085909 GGAACTTATTTCTTTCAAATTCGGGAA 58.914 33.333 0.00 0.00 34.26 3.97
2374 2410 8.812147 AACTTATTTCTTTCAAATTCGGGAAC 57.188 30.769 0.00 0.00 0.00 3.62
2375 2411 8.178313 ACTTATTTCTTTCAAATTCGGGAACT 57.822 30.769 0.00 0.00 0.00 3.01
2376 2412 8.638873 ACTTATTTCTTTCAAATTCGGGAACTT 58.361 29.630 0.00 0.00 0.00 2.66
2377 2413 9.476202 CTTATTTCTTTCAAATTCGGGAACTTT 57.524 29.630 0.00 0.00 0.00 2.66
2378 2414 9.825109 TTATTTCTTTCAAATTCGGGAACTTTT 57.175 25.926 0.00 0.00 0.00 2.27
2379 2415 8.731275 ATTTCTTTCAAATTCGGGAACTTTTT 57.269 26.923 0.00 0.00 0.00 1.94
2401 2437 7.778470 TTTTTGTATTCATGAACGCCTTTTT 57.222 28.000 11.07 0.00 0.00 1.94
2402 2438 6.761731 TTTGTATTCATGAACGCCTTTTTG 57.238 33.333 11.07 0.00 0.00 2.44
2403 2439 5.446143 TGTATTCATGAACGCCTTTTTGT 57.554 34.783 11.07 0.00 0.00 2.83
2404 2440 5.837437 TGTATTCATGAACGCCTTTTTGTT 58.163 33.333 11.07 0.00 0.00 2.83
2405 2441 6.276847 TGTATTCATGAACGCCTTTTTGTTT 58.723 32.000 11.07 0.00 0.00 2.83
2406 2442 6.758886 TGTATTCATGAACGCCTTTTTGTTTT 59.241 30.769 11.07 0.00 0.00 2.43
2407 2443 6.676237 ATTCATGAACGCCTTTTTGTTTTT 57.324 29.167 11.07 0.00 0.00 1.94
2444 2480 7.532682 TTCAAAACCATGAACTTTTTGTAGC 57.467 32.000 15.38 0.00 39.92 3.58
2445 2481 6.634805 TCAAAACCATGAACTTTTTGTAGCA 58.365 32.000 15.38 0.00 39.92 3.49
2446 2482 6.756074 TCAAAACCATGAACTTTTTGTAGCAG 59.244 34.615 15.38 0.00 39.92 4.24
2447 2483 5.852282 AACCATGAACTTTTTGTAGCAGT 57.148 34.783 0.00 0.00 0.00 4.40
2448 2484 5.186996 ACCATGAACTTTTTGTAGCAGTG 57.813 39.130 0.00 0.00 0.00 3.66
2449 2485 4.887071 ACCATGAACTTTTTGTAGCAGTGA 59.113 37.500 0.00 0.00 0.00 3.41
2450 2486 5.359576 ACCATGAACTTTTTGTAGCAGTGAA 59.640 36.000 0.00 0.00 0.00 3.18
2451 2487 6.040842 ACCATGAACTTTTTGTAGCAGTGAAT 59.959 34.615 0.00 0.00 0.00 2.57
2452 2488 6.925165 CCATGAACTTTTTGTAGCAGTGAATT 59.075 34.615 0.00 0.00 0.00 2.17
2453 2489 7.439056 CCATGAACTTTTTGTAGCAGTGAATTT 59.561 33.333 0.00 0.00 0.00 1.82
2454 2490 8.819974 CATGAACTTTTTGTAGCAGTGAATTTT 58.180 29.630 0.00 0.00 0.00 1.82
2455 2491 8.770438 TGAACTTTTTGTAGCAGTGAATTTTT 57.230 26.923 0.00 0.00 0.00 1.94
2501 2537 9.090692 AGTTTGTGAACTTCTTTCAATTTCATG 57.909 29.630 0.00 0.00 46.09 3.07
2502 2538 9.086336 GTTTGTGAACTTCTTTCAATTTCATGA 57.914 29.630 0.00 0.00 46.09 3.07
2503 2539 9.650539 TTTGTGAACTTCTTTCAATTTCATGAA 57.349 25.926 3.38 3.38 46.09 2.57
2504 2540 8.633075 TGTGAACTTCTTTCAATTTCATGAAC 57.367 30.769 7.89 0.00 46.09 3.18
2505 2541 8.469200 TGTGAACTTCTTTCAATTTCATGAACT 58.531 29.630 7.89 0.00 46.09 3.01
2506 2542 9.305925 GTGAACTTCTTTCAATTTCATGAACTT 57.694 29.630 7.89 6.42 46.09 2.66
2507 2543 9.874205 TGAACTTCTTTCAATTTCATGAACTTT 57.126 25.926 7.89 2.25 41.51 2.66
2534 2570 8.615878 TTTATCGAATTCTTGAACTCCTTTCA 57.384 30.769 3.52 0.00 42.83 2.69
2545 2581 6.702716 TGAACTCCTTTCAAATTACCGTTT 57.297 33.333 0.00 0.00 41.51 3.60
2546 2582 6.500041 TGAACTCCTTTCAAATTACCGTTTG 58.500 36.000 0.00 0.00 41.51 2.93
2547 2583 6.095720 TGAACTCCTTTCAAATTACCGTTTGT 59.904 34.615 0.00 0.00 41.51 2.83
2548 2584 6.459670 ACTCCTTTCAAATTACCGTTTGTT 57.540 33.333 0.00 0.00 39.50 2.83
2549 2585 6.869695 ACTCCTTTCAAATTACCGTTTGTTT 58.130 32.000 0.00 0.00 39.50 2.83
2550 2586 6.976349 ACTCCTTTCAAATTACCGTTTGTTTC 59.024 34.615 0.00 0.00 39.50 2.78
2551 2587 6.864342 TCCTTTCAAATTACCGTTTGTTTCA 58.136 32.000 0.00 0.00 39.50 2.69
2552 2588 7.321153 TCCTTTCAAATTACCGTTTGTTTCAA 58.679 30.769 0.00 0.00 39.50 2.69
2553 2589 7.817962 TCCTTTCAAATTACCGTTTGTTTCAAA 59.182 29.630 0.00 0.00 39.50 2.69
2554 2590 8.443937 CCTTTCAAATTACCGTTTGTTTCAAAA 58.556 29.630 0.00 0.00 39.50 2.44
2555 2591 9.813080 CTTTCAAATTACCGTTTGTTTCAAAAA 57.187 25.926 0.00 0.00 39.50 1.94
2558 2594 9.760660 TCAAATTACCGTTTGTTTCAAAAATTG 57.239 25.926 0.00 0.00 39.50 2.32
2559 2595 9.760660 CAAATTACCGTTTGTTTCAAAAATTGA 57.239 25.926 0.00 0.00 34.94 2.57
2572 2608 7.603297 TTCAAAAATTGAAAAGACGTCGATC 57.397 32.000 10.46 10.30 45.94 3.69
2573 2609 6.720343 TCAAAAATTGAAAAGACGTCGATCA 58.280 32.000 10.46 12.79 36.59 2.92
2574 2610 7.190191 TCAAAAATTGAAAAGACGTCGATCAA 58.810 30.769 25.13 25.13 36.59 2.57
2575 2611 6.969669 AAAATTGAAAAGACGTCGATCAAC 57.030 33.333 25.31 12.31 33.29 3.18
2576 2612 5.666969 AATTGAAAAGACGTCGATCAACA 57.333 34.783 25.31 14.20 33.29 3.33
2577 2613 4.708868 TTGAAAAGACGTCGATCAACAG 57.291 40.909 21.63 0.00 0.00 3.16
2578 2614 3.057019 TGAAAAGACGTCGATCAACAGG 58.943 45.455 10.46 0.00 0.00 4.00
2579 2615 1.429463 AAAGACGTCGATCAACAGGC 58.571 50.000 10.46 0.00 0.00 4.85
2580 2616 0.389948 AAGACGTCGATCAACAGGCC 60.390 55.000 10.46 0.00 0.00 5.19
2581 2617 1.215647 GACGTCGATCAACAGGCCT 59.784 57.895 0.00 0.00 0.00 5.19
2582 2618 0.389948 GACGTCGATCAACAGGCCTT 60.390 55.000 0.00 0.00 0.00 4.35
2583 2619 0.892755 ACGTCGATCAACAGGCCTTA 59.107 50.000 0.00 0.00 0.00 2.69
2584 2620 1.278238 CGTCGATCAACAGGCCTTAC 58.722 55.000 0.00 0.00 0.00 2.34
2585 2621 1.278238 GTCGATCAACAGGCCTTACG 58.722 55.000 0.00 2.97 0.00 3.18
2586 2622 0.174845 TCGATCAACAGGCCTTACGG 59.825 55.000 0.00 0.00 0.00 4.02
2587 2623 0.108329 CGATCAACAGGCCTTACGGT 60.108 55.000 0.00 0.00 0.00 4.83
2588 2624 1.674817 CGATCAACAGGCCTTACGGTT 60.675 52.381 0.00 0.16 0.00 4.44
2589 2625 2.433436 GATCAACAGGCCTTACGGTTT 58.567 47.619 0.00 0.00 0.00 3.27
2590 2626 1.600023 TCAACAGGCCTTACGGTTTG 58.400 50.000 0.00 0.00 0.00 2.93
2591 2627 1.134037 TCAACAGGCCTTACGGTTTGT 60.134 47.619 0.00 0.00 32.68 2.83
2592 2628 1.679153 CAACAGGCCTTACGGTTTGTT 59.321 47.619 0.00 0.00 38.57 2.83
2593 2629 1.314730 ACAGGCCTTACGGTTTGTTG 58.685 50.000 0.00 0.00 0.00 3.33
2594 2630 1.314730 CAGGCCTTACGGTTTGTTGT 58.685 50.000 0.00 0.00 0.00 3.32
2595 2631 1.265905 CAGGCCTTACGGTTTGTTGTC 59.734 52.381 0.00 0.00 0.00 3.18
2596 2632 1.134037 AGGCCTTACGGTTTGTTGTCA 60.134 47.619 0.00 0.00 0.00 3.58
2597 2633 1.677052 GGCCTTACGGTTTGTTGTCAA 59.323 47.619 0.00 0.00 0.00 3.18
2598 2634 2.287368 GGCCTTACGGTTTGTTGTCAAG 60.287 50.000 0.00 0.00 34.88 3.02
2599 2635 2.287368 GCCTTACGGTTTGTTGTCAAGG 60.287 50.000 0.00 0.00 34.88 3.61
2600 2636 2.946990 CCTTACGGTTTGTTGTCAAGGT 59.053 45.455 0.00 0.00 34.88 3.50
2601 2637 3.002965 CCTTACGGTTTGTTGTCAAGGTC 59.997 47.826 0.00 0.00 34.88 3.85
2602 2638 2.116827 ACGGTTTGTTGTCAAGGTCA 57.883 45.000 0.00 0.00 34.88 4.02
2603 2639 2.438411 ACGGTTTGTTGTCAAGGTCAA 58.562 42.857 0.00 0.00 34.88 3.18
2604 2640 2.162809 ACGGTTTGTTGTCAAGGTCAAC 59.837 45.455 0.00 0.00 43.48 3.18
2605 2641 2.478879 CGGTTTGTTGTCAAGGTCAACC 60.479 50.000 6.38 0.00 42.82 3.77
2619 2655 5.324784 AGGTCAACCTTTCAAGTTTCAAC 57.675 39.130 0.00 0.00 46.09 3.18
2620 2656 4.770010 AGGTCAACCTTTCAAGTTTCAACA 59.230 37.500 0.00 0.00 46.09 3.33
2621 2657 5.245075 AGGTCAACCTTTCAAGTTTCAACAA 59.755 36.000 0.00 0.00 46.09 2.83
2622 2658 5.929415 GGTCAACCTTTCAAGTTTCAACAAA 59.071 36.000 0.00 0.00 0.00 2.83
2623 2659 6.128661 GGTCAACCTTTCAAGTTTCAACAAAC 60.129 38.462 0.00 0.00 42.14 2.93
2624 2660 6.422400 GTCAACCTTTCAAGTTTCAACAAACA 59.578 34.615 0.74 0.00 43.98 2.83
2625 2661 6.986817 TCAACCTTTCAAGTTTCAACAAACAA 59.013 30.769 0.74 0.00 43.98 2.83
2626 2662 7.495934 TCAACCTTTCAAGTTTCAACAAACAAA 59.504 29.630 0.74 0.00 43.98 2.83
2627 2663 7.977789 ACCTTTCAAGTTTCAACAAACAAAT 57.022 28.000 0.74 0.00 43.98 2.32
2628 2664 8.028540 ACCTTTCAAGTTTCAACAAACAAATC 57.971 30.769 0.74 0.00 43.98 2.17
2629 2665 7.148656 ACCTTTCAAGTTTCAACAAACAAATCG 60.149 33.333 0.74 0.00 43.98 3.34
2630 2666 7.062839 CCTTTCAAGTTTCAACAAACAAATCGA 59.937 33.333 0.00 0.00 43.98 3.59
2631 2667 7.504922 TTCAAGTTTCAACAAACAAATCGAG 57.495 32.000 0.00 0.00 43.98 4.04
2632 2668 5.514914 TCAAGTTTCAACAAACAAATCGAGC 59.485 36.000 0.00 0.00 43.98 5.03
2633 2669 4.035017 AGTTTCAACAAACAAATCGAGCG 58.965 39.130 0.00 0.00 43.98 5.03
2634 2670 3.953874 TTCAACAAACAAATCGAGCGA 57.046 38.095 0.00 0.00 0.00 4.93
2635 2671 3.519908 TCAACAAACAAATCGAGCGAG 57.480 42.857 0.00 0.00 0.00 5.03
2636 2672 1.971962 CAACAAACAAATCGAGCGAGC 59.028 47.619 0.00 0.00 0.00 5.03
2637 2673 0.163788 ACAAACAAATCGAGCGAGCG 59.836 50.000 0.00 0.00 0.00 5.03
2638 2674 0.163788 CAAACAAATCGAGCGAGCGT 59.836 50.000 0.00 0.00 0.00 5.07
2639 2675 0.865769 AAACAAATCGAGCGAGCGTT 59.134 45.000 0.00 0.00 0.00 4.84
2640 2676 0.163788 AACAAATCGAGCGAGCGTTG 59.836 50.000 0.00 5.64 0.00 4.10
2641 2677 0.944311 ACAAATCGAGCGAGCGTTGT 60.944 50.000 11.28 11.28 0.00 3.32
2642 2678 0.163788 CAAATCGAGCGAGCGTTGTT 59.836 50.000 0.00 0.00 0.00 2.83
2643 2679 0.438830 AAATCGAGCGAGCGTTGTTC 59.561 50.000 0.00 0.00 0.00 3.18
2644 2680 0.388649 AATCGAGCGAGCGTTGTTCT 60.389 50.000 0.00 0.00 0.00 3.01
2645 2681 0.388649 ATCGAGCGAGCGTTGTTCTT 60.389 50.000 0.00 0.00 0.00 2.52
2646 2682 0.596600 TCGAGCGAGCGTTGTTCTTT 60.597 50.000 0.00 0.00 0.00 2.52
2647 2683 0.232303 CGAGCGAGCGTTGTTCTTTT 59.768 50.000 0.00 0.00 0.00 2.27
2648 2684 1.332904 CGAGCGAGCGTTGTTCTTTTT 60.333 47.619 0.00 0.00 0.00 1.94
2649 2685 2.036933 GAGCGAGCGTTGTTCTTTTTG 58.963 47.619 0.00 0.00 0.00 2.44
2650 2686 1.668751 AGCGAGCGTTGTTCTTTTTGA 59.331 42.857 0.00 0.00 0.00 2.69
2651 2687 2.290641 AGCGAGCGTTGTTCTTTTTGAT 59.709 40.909 0.00 0.00 0.00 2.57
2652 2688 3.496884 AGCGAGCGTTGTTCTTTTTGATA 59.503 39.130 0.00 0.00 0.00 2.15
2653 2689 3.840763 GCGAGCGTTGTTCTTTTTGATAG 59.159 43.478 0.00 0.00 0.00 2.08
2654 2690 4.394795 CGAGCGTTGTTCTTTTTGATAGG 58.605 43.478 0.00 0.00 0.00 2.57
2655 2691 4.159120 GAGCGTTGTTCTTTTTGATAGGC 58.841 43.478 0.00 0.00 0.00 3.93
2656 2692 3.057526 AGCGTTGTTCTTTTTGATAGGCC 60.058 43.478 0.00 0.00 0.00 5.19
2657 2693 3.488489 CGTTGTTCTTTTTGATAGGCCG 58.512 45.455 0.00 0.00 0.00 6.13
2658 2694 3.669557 CGTTGTTCTTTTTGATAGGCCGG 60.670 47.826 0.00 0.00 0.00 6.13
2659 2695 3.149005 TGTTCTTTTTGATAGGCCGGT 57.851 42.857 1.90 0.00 0.00 5.28
2660 2696 3.492337 TGTTCTTTTTGATAGGCCGGTT 58.508 40.909 1.90 0.00 0.00 4.44
2661 2697 3.504520 TGTTCTTTTTGATAGGCCGGTTC 59.495 43.478 1.90 0.00 0.00 3.62
2662 2698 3.426787 TCTTTTTGATAGGCCGGTTCA 57.573 42.857 1.90 0.00 0.00 3.18
2663 2699 3.757270 TCTTTTTGATAGGCCGGTTCAA 58.243 40.909 1.90 12.28 0.00 2.69
2664 2700 4.340617 TCTTTTTGATAGGCCGGTTCAAT 58.659 39.130 15.70 0.00 0.00 2.57
2665 2701 4.770010 TCTTTTTGATAGGCCGGTTCAATT 59.230 37.500 15.70 0.00 0.00 2.32
2666 2702 4.448537 TTTTGATAGGCCGGTTCAATTG 57.551 40.909 15.70 0.00 0.00 2.32
2667 2703 3.358111 TTGATAGGCCGGTTCAATTGA 57.642 42.857 3.38 3.38 0.00 2.57
2668 2704 2.639065 TGATAGGCCGGTTCAATTGAC 58.361 47.619 7.89 3.65 0.00 3.18
2669 2705 1.947456 GATAGGCCGGTTCAATTGACC 59.053 52.381 7.89 11.71 0.00 4.02
2670 2706 0.693622 TAGGCCGGTTCAATTGACCA 59.306 50.000 20.14 2.49 0.00 4.02
2671 2707 0.039618 AGGCCGGTTCAATTGACCAT 59.960 50.000 20.14 6.58 0.00 3.55
2672 2708 0.173255 GGCCGGTTCAATTGACCATG 59.827 55.000 20.14 13.98 0.00 3.66
2673 2709 0.458370 GCCGGTTCAATTGACCATGC 60.458 55.000 20.14 17.85 0.00 4.06
2674 2710 0.179166 CCGGTTCAATTGACCATGCG 60.179 55.000 20.14 9.45 0.00 4.73
2675 2711 0.521291 CGGTTCAATTGACCATGCGT 59.479 50.000 20.14 0.00 0.00 5.24
2676 2712 1.728825 CGGTTCAATTGACCATGCGTG 60.729 52.381 20.14 0.00 0.00 5.34
2677 2713 1.269448 GGTTCAATTGACCATGCGTGT 59.731 47.619 7.89 0.00 0.00 4.49
2678 2714 2.288152 GGTTCAATTGACCATGCGTGTT 60.288 45.455 7.89 0.00 0.00 3.32
2679 2715 2.702898 TCAATTGACCATGCGTGTTG 57.297 45.000 3.38 2.62 0.00 3.33
2680 2716 1.062258 CAATTGACCATGCGTGTTGC 58.938 50.000 4.96 0.00 46.70 4.17
2694 2730 3.337398 GTTGCGCCAACAAGTTGAA 57.663 47.368 10.54 0.00 43.09 2.69
2695 2731 0.920664 GTTGCGCCAACAAGTTGAAC 59.079 50.000 10.54 6.94 43.09 3.18
2696 2732 0.814457 TTGCGCCAACAAGTTGAACT 59.186 45.000 10.54 0.00 42.93 3.01
2697 2733 1.669604 TGCGCCAACAAGTTGAACTA 58.330 45.000 10.54 0.00 42.93 2.24
2698 2734 1.601903 TGCGCCAACAAGTTGAACTAG 59.398 47.619 10.54 0.00 42.93 2.57
2699 2735 1.663161 GCGCCAACAAGTTGAACTAGC 60.663 52.381 10.54 7.60 42.93 3.42
2700 2736 1.398451 CGCCAACAAGTTGAACTAGCG 60.398 52.381 10.54 14.78 42.93 4.26
2701 2737 1.663161 GCCAACAAGTTGAACTAGCGC 60.663 52.381 10.54 0.00 42.93 5.92
2702 2738 1.873591 CCAACAAGTTGAACTAGCGCT 59.126 47.619 17.26 17.26 42.93 5.92
2703 2739 2.290641 CCAACAAGTTGAACTAGCGCTT 59.709 45.455 18.68 0.00 42.93 4.68
2704 2740 3.496884 CCAACAAGTTGAACTAGCGCTTA 59.503 43.478 18.68 0.00 42.93 3.09
2705 2741 4.024387 CCAACAAGTTGAACTAGCGCTTAA 60.024 41.667 18.68 0.00 42.93 1.85
2706 2742 4.992381 ACAAGTTGAACTAGCGCTTAAG 57.008 40.909 18.68 11.11 0.00 1.85
2707 2743 3.746492 ACAAGTTGAACTAGCGCTTAAGG 59.254 43.478 18.68 6.53 0.00 2.69
2708 2744 2.347731 AGTTGAACTAGCGCTTAAGGC 58.652 47.619 18.68 5.28 37.64 4.35
2717 2753 3.395669 GCTTAAGGCGCCGTACAG 58.604 61.111 22.20 20.45 0.00 2.74
2718 2754 2.171725 GCTTAAGGCGCCGTACAGG 61.172 63.158 22.20 15.11 44.97 4.00
2719 2755 1.217244 CTTAAGGCGCCGTACAGGT 59.783 57.895 22.20 0.00 43.70 4.00
2728 2764 2.094762 GCCGTACAGGTGAAATCACT 57.905 50.000 12.87 0.00 45.73 3.41
2729 2765 3.241067 GCCGTACAGGTGAAATCACTA 57.759 47.619 12.87 0.00 45.73 2.74
2730 2766 3.187700 GCCGTACAGGTGAAATCACTAG 58.812 50.000 12.87 8.43 45.73 2.57
2731 2767 3.368116 GCCGTACAGGTGAAATCACTAGT 60.368 47.826 12.87 13.02 45.73 2.57
2732 2768 4.817517 CCGTACAGGTGAAATCACTAGTT 58.182 43.478 12.87 0.00 45.73 2.24
2733 2769 4.625742 CCGTACAGGTGAAATCACTAGTTG 59.374 45.833 12.87 9.07 45.73 3.16
2734 2770 5.466819 CGTACAGGTGAAATCACTAGTTGA 58.533 41.667 12.87 0.00 45.73 3.18
2735 2771 5.573282 CGTACAGGTGAAATCACTAGTTGAG 59.427 44.000 12.87 4.47 45.73 3.02
2736 2772 4.899502 ACAGGTGAAATCACTAGTTGAGG 58.100 43.478 12.87 0.00 45.73 3.86
2737 2773 4.593206 ACAGGTGAAATCACTAGTTGAGGA 59.407 41.667 12.87 0.00 45.73 3.71
2738 2774 5.174395 CAGGTGAAATCACTAGTTGAGGAG 58.826 45.833 12.87 0.00 45.73 3.69
2739 2775 4.841246 AGGTGAAATCACTAGTTGAGGAGT 59.159 41.667 12.87 0.00 45.73 3.85
2740 2776 6.017192 AGGTGAAATCACTAGTTGAGGAGTA 58.983 40.000 12.87 0.00 45.73 2.59
2741 2777 6.071278 AGGTGAAATCACTAGTTGAGGAGTAC 60.071 42.308 12.87 0.00 45.73 2.73
2742 2778 6.071278 GGTGAAATCACTAGTTGAGGAGTACT 60.071 42.308 12.87 0.00 45.73 2.73
2743 2779 7.030768 GTGAAATCACTAGTTGAGGAGTACTC 58.969 42.308 14.87 14.87 43.67 2.59
2744 2780 8.098291 GTGAAATCACTAGTTGAGGAGTACTCG 61.098 44.444 16.56 2.92 44.94 4.18
2753 2789 3.299340 GAGGAGTACTCGTTGCAAAGA 57.701 47.619 18.54 14.45 36.29 2.52
2754 2790 3.851098 GAGGAGTACTCGTTGCAAAGAT 58.149 45.455 18.54 8.63 36.29 2.40
2755 2791 3.851098 AGGAGTACTCGTTGCAAAGATC 58.149 45.455 15.52 9.90 0.00 2.75
2756 2792 3.258372 AGGAGTACTCGTTGCAAAGATCA 59.742 43.478 15.52 3.95 0.00 2.92
2757 2793 3.368236 GGAGTACTCGTTGCAAAGATCAC 59.632 47.826 15.52 14.91 0.00 3.06
2758 2794 4.238514 GAGTACTCGTTGCAAAGATCACT 58.761 43.478 20.90 20.90 0.00 3.41
2759 2795 4.238514 AGTACTCGTTGCAAAGATCACTC 58.761 43.478 15.52 5.56 0.00 3.51
2760 2796 2.417719 ACTCGTTGCAAAGATCACTCC 58.582 47.619 15.52 0.00 0.00 3.85
2761 2797 2.224281 ACTCGTTGCAAAGATCACTCCA 60.224 45.455 15.52 0.00 0.00 3.86
2762 2798 2.807967 CTCGTTGCAAAGATCACTCCAA 59.192 45.455 15.52 0.00 0.00 3.53
2763 2799 2.548057 TCGTTGCAAAGATCACTCCAAC 59.452 45.455 11.22 2.67 0.00 3.77
2764 2800 2.549754 CGTTGCAAAGATCACTCCAACT 59.450 45.455 6.52 0.00 32.62 3.16
2765 2801 3.364366 CGTTGCAAAGATCACTCCAACTC 60.364 47.826 6.52 0.00 32.62 3.01
2766 2802 3.777106 TGCAAAGATCACTCCAACTCT 57.223 42.857 0.00 0.00 0.00 3.24
2767 2803 3.668447 TGCAAAGATCACTCCAACTCTC 58.332 45.455 0.00 0.00 0.00 3.20
2768 2804 3.006247 GCAAAGATCACTCCAACTCTCC 58.994 50.000 0.00 0.00 0.00 3.71
2769 2805 3.557898 GCAAAGATCACTCCAACTCTCCA 60.558 47.826 0.00 0.00 0.00 3.86
2770 2806 4.841422 CAAAGATCACTCCAACTCTCCAT 58.159 43.478 0.00 0.00 0.00 3.41
2771 2807 4.484537 AAGATCACTCCAACTCTCCATG 57.515 45.455 0.00 0.00 0.00 3.66
2772 2808 3.448934 AGATCACTCCAACTCTCCATGT 58.551 45.455 0.00 0.00 0.00 3.21
2773 2809 3.843027 AGATCACTCCAACTCTCCATGTT 59.157 43.478 0.00 0.00 0.00 2.71
2774 2810 3.407424 TCACTCCAACTCTCCATGTTG 57.593 47.619 0.00 0.00 42.96 3.33
2775 2811 2.705658 TCACTCCAACTCTCCATGTTGT 59.294 45.455 0.00 0.00 42.09 3.32
2776 2812 2.810274 CACTCCAACTCTCCATGTTGTG 59.190 50.000 0.00 0.00 42.09 3.33
2777 2813 2.705658 ACTCCAACTCTCCATGTTGTGA 59.294 45.455 0.00 0.00 42.09 3.58
2778 2814 3.070018 CTCCAACTCTCCATGTTGTGAC 58.930 50.000 0.00 0.00 42.09 3.67
2779 2815 2.437651 TCCAACTCTCCATGTTGTGACA 59.562 45.455 0.00 0.00 42.09 3.58
2780 2816 3.118075 TCCAACTCTCCATGTTGTGACAA 60.118 43.478 0.00 0.00 42.09 3.18
2781 2817 3.251729 CCAACTCTCCATGTTGTGACAAG 59.748 47.826 0.00 0.00 42.09 3.16
2782 2818 3.845781 ACTCTCCATGTTGTGACAAGT 57.154 42.857 0.00 0.00 39.66 3.16
2783 2819 3.470709 ACTCTCCATGTTGTGACAAGTG 58.529 45.455 0.00 0.77 39.66 3.16
2784 2820 2.810274 CTCTCCATGTTGTGACAAGTGG 59.190 50.000 18.56 18.56 39.66 4.00
2785 2821 1.267806 CTCCATGTTGTGACAAGTGGC 59.732 52.381 19.40 1.54 39.66 5.01
2786 2822 0.040157 CCATGTTGTGACAAGTGGCG 60.040 55.000 14.35 0.00 39.66 5.69
2787 2823 0.661187 CATGTTGTGACAAGTGGCGC 60.661 55.000 0.00 0.00 39.66 6.53
2788 2824 1.100463 ATGTTGTGACAAGTGGCGCA 61.100 50.000 10.83 0.00 42.66 6.09
2789 2825 1.298339 GTTGTGACAAGTGGCGCAC 60.298 57.895 10.83 5.73 44.28 5.34
2790 2826 1.746991 TTGTGACAAGTGGCGCACA 60.747 52.632 10.83 1.22 44.28 4.57
2791 2827 1.100463 TTGTGACAAGTGGCGCACAT 61.100 50.000 10.83 0.00 44.28 3.21
2792 2828 1.081906 GTGACAAGTGGCGCACATG 60.082 57.895 10.83 11.41 38.74 3.21
2793 2829 2.126734 GACAAGTGGCGCACATGC 60.127 61.111 10.83 0.00 36.67 4.06
2794 2830 2.906388 ACAAGTGGCGCACATGCA 60.906 55.556 10.83 0.00 36.67 3.96
2795 2831 2.126618 CAAGTGGCGCACATGCAG 60.127 61.111 10.83 0.00 42.21 4.41
2796 2832 4.047059 AAGTGGCGCACATGCAGC 62.047 61.111 10.83 8.22 42.21 5.25
2815 2851 2.972505 CGCCACTTGTCGCAACCT 60.973 61.111 0.00 0.00 0.00 3.50
2816 2852 2.639286 GCCACTTGTCGCAACCTG 59.361 61.111 0.00 0.00 0.00 4.00
2817 2853 2.908073 GCCACTTGTCGCAACCTGG 61.908 63.158 0.00 0.00 0.00 4.45
2818 2854 1.227823 CCACTTGTCGCAACCTGGA 60.228 57.895 0.00 0.00 0.00 3.86
2819 2855 0.817634 CCACTTGTCGCAACCTGGAA 60.818 55.000 0.00 0.00 0.00 3.53
2820 2856 0.588252 CACTTGTCGCAACCTGGAAG 59.412 55.000 0.00 0.00 0.00 3.46
2821 2857 0.180406 ACTTGTCGCAACCTGGAAGT 59.820 50.000 0.00 0.00 0.00 3.01
2822 2858 1.308998 CTTGTCGCAACCTGGAAGTT 58.691 50.000 0.00 0.00 0.00 2.66
2823 2859 1.676006 CTTGTCGCAACCTGGAAGTTT 59.324 47.619 0.00 0.00 0.00 2.66
2824 2860 1.757682 TGTCGCAACCTGGAAGTTTT 58.242 45.000 0.00 0.00 0.00 2.43
2825 2861 2.096248 TGTCGCAACCTGGAAGTTTTT 58.904 42.857 0.00 0.00 0.00 1.94
2826 2862 2.098443 TGTCGCAACCTGGAAGTTTTTC 59.902 45.455 0.00 0.00 0.00 2.29
2877 2913 8.950403 AAAACGTTTTATCTCTCAAACTATGC 57.050 30.769 24.13 0.00 31.75 3.14
2878 2914 6.332504 ACGTTTTATCTCTCAAACTATGCG 57.667 37.500 0.00 0.00 31.75 4.73
2879 2915 5.867716 ACGTTTTATCTCTCAAACTATGCGT 59.132 36.000 0.00 0.00 31.75 5.24
2880 2916 6.034683 ACGTTTTATCTCTCAAACTATGCGTC 59.965 38.462 0.00 0.00 31.75 5.19
2881 2917 6.508088 CGTTTTATCTCTCAAACTATGCGTCC 60.508 42.308 0.00 0.00 31.75 4.79
2882 2918 5.592104 TTATCTCTCAAACTATGCGTCCA 57.408 39.130 0.00 0.00 0.00 4.02
2883 2919 3.953712 TCTCTCAAACTATGCGTCCAA 57.046 42.857 0.00 0.00 0.00 3.53
2884 2920 4.265904 TCTCTCAAACTATGCGTCCAAA 57.734 40.909 0.00 0.00 0.00 3.28
2885 2921 4.832248 TCTCTCAAACTATGCGTCCAAAT 58.168 39.130 0.00 0.00 0.00 2.32
2886 2922 4.870426 TCTCTCAAACTATGCGTCCAAATC 59.130 41.667 0.00 0.00 0.00 2.17
2887 2923 4.832248 TCTCAAACTATGCGTCCAAATCT 58.168 39.130 0.00 0.00 0.00 2.40
2888 2924 4.870426 TCTCAAACTATGCGTCCAAATCTC 59.130 41.667 0.00 0.00 0.00 2.75
2889 2925 4.574892 TCAAACTATGCGTCCAAATCTCA 58.425 39.130 0.00 0.00 0.00 3.27
2890 2926 5.000591 TCAAACTATGCGTCCAAATCTCAA 58.999 37.500 0.00 0.00 0.00 3.02
2891 2927 5.471797 TCAAACTATGCGTCCAAATCTCAAA 59.528 36.000 0.00 0.00 0.00 2.69
2892 2928 4.946784 ACTATGCGTCCAAATCTCAAAC 57.053 40.909 0.00 0.00 0.00 2.93
2893 2929 3.689649 ACTATGCGTCCAAATCTCAAACC 59.310 43.478 0.00 0.00 0.00 3.27
2894 2930 0.871722 TGCGTCCAAATCTCAAACCG 59.128 50.000 0.00 0.00 0.00 4.44
2895 2931 0.454452 GCGTCCAAATCTCAAACCGC 60.454 55.000 0.00 0.00 0.00 5.68
2896 2932 1.156736 CGTCCAAATCTCAAACCGCT 58.843 50.000 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 5.884792 AGGGATCATCATTCTGTCTGAAAAC 59.115 40.000 0.00 0.00 38.29 2.43
56 57 9.042008 GTTGTTCTAGAGAATCAAACTGTGTAA 57.958 33.333 0.00 0.00 37.82 2.41
59 60 6.483307 TGGTTGTTCTAGAGAATCAAACTGTG 59.517 38.462 16.49 0.00 37.82 3.66
257 258 8.919145 ACAAATTAACCCTATCACAGAAACAAA 58.081 29.630 0.00 0.00 0.00 2.83
272 273 5.068591 ACAGACTGACCAAACAAATTAACCC 59.931 40.000 10.08 0.00 0.00 4.11
339 349 1.526575 CTTGGCACCTTTCGCACCAT 61.527 55.000 0.00 0.00 0.00 3.55
356 366 4.201930 TGCGAAATTGTTTTACGACACCTT 60.202 37.500 0.00 0.00 0.00 3.50
357 367 3.312973 TGCGAAATTGTTTTACGACACCT 59.687 39.130 0.00 0.00 0.00 4.00
358 368 3.619729 TGCGAAATTGTTTTACGACACC 58.380 40.909 0.00 0.00 0.00 4.16
359 369 5.607858 TTTGCGAAATTGTTTTACGACAC 57.392 34.783 0.00 0.00 0.00 3.67
360 370 6.627690 TTTTTGCGAAATTGTTTTACGACA 57.372 29.167 0.00 0.00 0.00 4.35
386 396 5.416639 ACCTCTTGTTTTACGACACCTTTTT 59.583 36.000 0.00 0.00 0.00 1.94
387 397 4.945543 ACCTCTTGTTTTACGACACCTTTT 59.054 37.500 0.00 0.00 0.00 2.27
388 398 4.334481 CACCTCTTGTTTTACGACACCTTT 59.666 41.667 0.00 0.00 0.00 3.11
468 479 0.450983 GAGCATGAGCAACAGCTTCC 59.549 55.000 0.00 0.00 45.49 3.46
567 579 2.414559 GCGATCCAAAATGACACCACAG 60.415 50.000 0.00 0.00 0.00 3.66
611 623 7.567458 ACACTTGAACTTTACCCTTGTTACTA 58.433 34.615 0.00 0.00 0.00 1.82
647 659 7.881232 ACTCCGGAAAATCAGAAAATGTAACTA 59.119 33.333 5.23 0.00 0.00 2.24
699 711 6.093495 GTGCACTGCATTCTAAAGGTTACATA 59.907 38.462 10.32 0.00 41.91 2.29
737 749 7.959651 CACAGAAGTATAAACTGCACATCTTTC 59.040 37.037 0.00 0.00 35.62 2.62
754 766 5.871396 ACTGAACTTTCCTCACAGAAGTA 57.129 39.130 0.00 0.00 33.54 2.24
755 767 4.762289 ACTGAACTTTCCTCACAGAAGT 57.238 40.909 0.00 0.00 35.27 3.01
826 842 0.630673 TTGCAATCCATAGCACCCCT 59.369 50.000 0.00 0.00 41.05 4.79
879 895 5.126222 TCACTAAGCATGTCTAGAAGGTCTG 59.874 44.000 0.00 0.00 0.00 3.51
883 899 7.856145 AAAATCACTAAGCATGTCTAGAAGG 57.144 36.000 0.00 0.00 0.00 3.46
920 936 5.763204 AGGCGAGAGAAAGAATGTAAAAACA 59.237 36.000 0.00 0.00 0.00 2.83
923 939 6.710744 AGAAAGGCGAGAGAAAGAATGTAAAA 59.289 34.615 0.00 0.00 0.00 1.52
929 945 5.983540 ACATAGAAAGGCGAGAGAAAGAAT 58.016 37.500 0.00 0.00 0.00 2.40
936 952 5.817816 ACCAAATTACATAGAAAGGCGAGAG 59.182 40.000 0.00 0.00 0.00 3.20
940 956 8.856247 GTTTTTACCAAATTACATAGAAAGGCG 58.144 33.333 0.00 0.00 0.00 5.52
945 961 9.906660 CTGCAGTTTTTACCAAATTACATAGAA 57.093 29.630 5.25 0.00 0.00 2.10
946 962 8.519526 CCTGCAGTTTTTACCAAATTACATAGA 58.480 33.333 13.81 0.00 0.00 1.98
947 963 8.519526 TCCTGCAGTTTTTACCAAATTACATAG 58.480 33.333 13.81 0.00 0.00 2.23
999 1017 7.770433 AGTGTTCTTGCACTTCTATATTGCATA 59.230 33.333 0.06 0.00 46.45 3.14
1072 1090 9.640963 GTCACTGAAGTTTATACTTACTGATGT 57.359 33.333 0.00 0.00 44.51 3.06
1117 1135 6.348786 CCCTGTGTTAGACAAATTGACAGATG 60.349 42.308 10.56 0.84 32.80 2.90
1130 1148 4.473477 ACTTCATAGCCCTGTGTTAGAC 57.527 45.455 0.00 0.00 0.00 2.59
1132 1150 4.579869 ACAACTTCATAGCCCTGTGTTAG 58.420 43.478 0.00 0.00 0.00 2.34
1153 1171 3.449632 GCTCTATCTGGTTTCCTCGAAC 58.550 50.000 0.00 0.00 0.00 3.95
1163 1181 1.739338 CGCCCTTCGCTCTATCTGGT 61.739 60.000 0.00 0.00 34.21 4.00
1169 1187 1.445716 GCTAGACGCCCTTCGCTCTA 61.446 60.000 0.00 0.00 43.23 2.43
1177 1195 3.839432 GCTTCCGCTAGACGCCCT 61.839 66.667 0.00 0.00 41.76 5.19
1200 1218 1.792118 GCACGTTCCTTGTGGGTTCC 61.792 60.000 0.00 0.00 37.80 3.62
1206 1224 1.528586 CTGAAGAGCACGTTCCTTGTG 59.471 52.381 0.00 0.00 40.32 3.33
1236 1254 3.055080 ATTTGATGCGGTGGCGCTG 62.055 57.895 7.64 1.58 44.10 5.18
1240 1258 1.139520 GGTCATTTGATGCGGTGGC 59.860 57.895 0.00 0.00 40.52 5.01
1241 1259 1.024046 TCGGTCATTTGATGCGGTGG 61.024 55.000 0.00 0.00 0.00 4.61
1244 1262 1.062587 GAAGTCGGTCATTTGATGCGG 59.937 52.381 0.00 0.00 0.00 5.69
1323 1341 1.826385 CGCACCTTCTCCCTGAAAAT 58.174 50.000 0.00 0.00 33.79 1.82
1327 1345 2.922503 TGCGCACCTTCTCCCTGA 60.923 61.111 5.66 0.00 0.00 3.86
1345 1363 1.135689 GCACTGTGAGTTAAATGCCGG 60.136 52.381 12.86 0.00 0.00 6.13
1355 1373 0.108898 GATGAGCGAGCACTGTGAGT 60.109 55.000 12.86 0.00 0.00 3.41
1357 1375 0.605083 AAGATGAGCGAGCACTGTGA 59.395 50.000 12.86 0.00 0.00 3.58
1363 1381 2.346803 GGTGTTTAAGATGAGCGAGCA 58.653 47.619 0.00 0.00 0.00 4.26
1365 1383 2.876091 TCGGTGTTTAAGATGAGCGAG 58.124 47.619 0.00 0.00 33.74 5.03
1367 1385 3.448686 AGATCGGTGTTTAAGATGAGCG 58.551 45.455 0.00 0.00 0.00 5.03
1379 1397 1.749063 TCGAAGTGCATAGATCGGTGT 59.251 47.619 11.62 0.00 36.05 4.16
1432 1451 1.755959 TGATGTTTGCCTGCAACAACT 59.244 42.857 3.64 0.00 35.46 3.16
1445 1464 0.981183 TCCTACGGCTGGTGATGTTT 59.019 50.000 0.00 0.00 0.00 2.83
1450 1469 0.907704 ATGGTTCCTACGGCTGGTGA 60.908 55.000 0.00 0.00 0.00 4.02
1476 1495 2.103373 TCAGAAGGAAGATCAGGTCCG 58.897 52.381 0.00 0.00 39.06 4.79
1527 1546 0.746923 GAATAGTCCGGTGGGCCAAC 60.747 60.000 12.84 12.84 34.09 3.77
1534 1553 1.659098 GTTGAAGCGAATAGTCCGGTG 59.341 52.381 0.00 0.00 37.82 4.94
1574 1593 6.595326 TGCTGTGATCTGTTTATCTTTGTAGG 59.405 38.462 0.00 0.00 0.00 3.18
1576 1595 7.386059 TCTGCTGTGATCTGTTTATCTTTGTA 58.614 34.615 0.00 0.00 0.00 2.41
1629 1648 3.626924 GGCCTCAGGTCGTGTGGT 61.627 66.667 13.55 0.00 41.28 4.16
1635 1654 2.716017 GGAGACAGGCCTCAGGTCG 61.716 68.421 0.00 0.00 36.68 4.79
1638 1657 0.322008 GTTTGGAGACAGGCCTCAGG 60.322 60.000 0.00 0.00 44.54 3.86
1882 1911 1.070914 GCCCTGCTAATACTCCAGGTC 59.929 57.143 5.32 0.00 43.61 3.85
1883 1912 1.132500 GCCCTGCTAATACTCCAGGT 58.868 55.000 5.32 0.00 43.61 4.00
1884 1913 0.034059 CGCCCTGCTAATACTCCAGG 59.966 60.000 0.00 0.00 44.49 4.45
1885 1914 0.753262 ACGCCCTGCTAATACTCCAG 59.247 55.000 0.00 0.00 0.00 3.86
1886 1915 1.134521 CAACGCCCTGCTAATACTCCA 60.135 52.381 0.00 0.00 0.00 3.86
1887 1916 1.583054 CAACGCCCTGCTAATACTCC 58.417 55.000 0.00 0.00 0.00 3.85
1888 1917 0.938008 GCAACGCCCTGCTAATACTC 59.062 55.000 0.00 0.00 39.34 2.59
1889 1918 0.810031 CGCAACGCCCTGCTAATACT 60.810 55.000 3.43 0.00 40.33 2.12
1890 1919 1.641677 CGCAACGCCCTGCTAATAC 59.358 57.895 3.43 0.00 40.33 1.89
1891 1920 1.522806 CCGCAACGCCCTGCTAATA 60.523 57.895 3.43 0.00 40.33 0.98
1917 1946 4.636206 AGCAACTCGAGTGTTCTTTCTTTT 59.364 37.500 20.85 0.00 0.00 2.27
1918 1947 4.192317 AGCAACTCGAGTGTTCTTTCTTT 58.808 39.130 20.85 0.00 0.00 2.52
1919 1948 3.798202 AGCAACTCGAGTGTTCTTTCTT 58.202 40.909 20.85 0.00 0.00 2.52
1920 1949 3.460857 AGCAACTCGAGTGTTCTTTCT 57.539 42.857 20.85 0.00 0.00 2.52
2074 2107 7.012044 GTCAGCCTCTAACACTGTTAAAAAGAA 59.988 37.037 3.26 0.00 33.12 2.52
2113 2149 2.583441 CGTGGCCTGGTCTGGAAGA 61.583 63.158 3.32 0.00 43.69 2.87
2114 2150 2.046892 CGTGGCCTGGTCTGGAAG 60.047 66.667 3.32 0.00 0.00 3.46
2115 2151 2.525629 TCGTGGCCTGGTCTGGAA 60.526 61.111 3.32 0.00 0.00 3.53
2116 2152 2.997315 CTCGTGGCCTGGTCTGGA 60.997 66.667 3.32 0.00 0.00 3.86
2117 2153 4.767255 GCTCGTGGCCTGGTCTGG 62.767 72.222 3.32 0.00 34.27 3.86
2121 2157 4.008933 GTGAGCTCGTGGCCTGGT 62.009 66.667 9.64 0.00 43.05 4.00
2167 2203 2.669569 CAAGCACGAGGGGGTGTG 60.670 66.667 0.00 0.00 40.08 3.82
2168 2204 4.643387 GCAAGCACGAGGGGGTGT 62.643 66.667 0.00 0.00 40.08 4.16
2169 2205 2.859273 CTAGCAAGCACGAGGGGGTG 62.859 65.000 0.00 0.00 40.89 4.61
2170 2206 2.606519 TAGCAAGCACGAGGGGGT 60.607 61.111 0.00 0.00 0.00 4.95
2171 2207 2.187946 CTAGCAAGCACGAGGGGG 59.812 66.667 0.00 0.00 0.00 5.40
2172 2208 1.153549 GTCTAGCAAGCACGAGGGG 60.154 63.158 0.00 0.00 0.00 4.79
2173 2209 1.153549 GGTCTAGCAAGCACGAGGG 60.154 63.158 0.00 0.00 0.00 4.30
2174 2210 0.037326 TTGGTCTAGCAAGCACGAGG 60.037 55.000 0.00 0.00 0.00 4.63
2175 2211 1.795768 TTTGGTCTAGCAAGCACGAG 58.204 50.000 0.00 0.00 0.00 4.18
2176 2212 2.472695 ATTTGGTCTAGCAAGCACGA 57.527 45.000 0.00 0.00 0.00 4.35
2177 2213 3.485877 GCTTATTTGGTCTAGCAAGCACG 60.486 47.826 0.00 0.00 38.55 5.34
2178 2214 3.181496 GGCTTATTTGGTCTAGCAAGCAC 60.181 47.826 6.47 0.00 40.04 4.40
2179 2215 3.016736 GGCTTATTTGGTCTAGCAAGCA 58.983 45.455 6.47 0.00 40.04 3.91
2180 2216 2.032178 CGGCTTATTTGGTCTAGCAAGC 59.968 50.000 0.00 0.00 38.09 4.01
2181 2217 2.032178 GCGGCTTATTTGGTCTAGCAAG 59.968 50.000 0.00 0.00 35.36 4.01
2182 2218 2.014128 GCGGCTTATTTGGTCTAGCAA 58.986 47.619 0.00 0.00 35.36 3.91
2183 2219 1.663695 GCGGCTTATTTGGTCTAGCA 58.336 50.000 0.00 0.00 35.36 3.49
2184 2220 0.945099 GGCGGCTTATTTGGTCTAGC 59.055 55.000 0.00 0.00 0.00 3.42
2185 2221 1.217882 CGGCGGCTTATTTGGTCTAG 58.782 55.000 7.61 0.00 0.00 2.43
2186 2222 0.179067 CCGGCGGCTTATTTGGTCTA 60.179 55.000 15.42 0.00 0.00 2.59
2187 2223 1.451387 CCGGCGGCTTATTTGGTCT 60.451 57.895 15.42 0.00 0.00 3.85
2188 2224 3.107447 CCGGCGGCTTATTTGGTC 58.893 61.111 15.42 0.00 0.00 4.02
2189 2225 3.138128 GCCGGCGGCTTATTTGGT 61.138 61.111 41.44 0.00 46.69 3.67
2199 2235 3.518068 GAAGAAATGGGCCGGCGG 61.518 66.667 24.35 24.35 0.00 6.13
2200 2236 3.518068 GGAAGAAATGGGCCGGCG 61.518 66.667 22.54 0.00 0.00 6.46
2201 2237 2.043953 AGGAAGAAATGGGCCGGC 60.044 61.111 21.18 21.18 0.00 6.13
2202 2238 1.453928 GGAGGAAGAAATGGGCCGG 60.454 63.158 0.00 0.00 0.00 6.13
2203 2239 1.032114 GTGGAGGAAGAAATGGGCCG 61.032 60.000 0.00 0.00 0.00 6.13
2204 2240 0.332972 AGTGGAGGAAGAAATGGGCC 59.667 55.000 0.00 0.00 0.00 5.80
2205 2241 1.272147 ACAGTGGAGGAAGAAATGGGC 60.272 52.381 0.00 0.00 0.00 5.36
2206 2242 2.887151 ACAGTGGAGGAAGAAATGGG 57.113 50.000 0.00 0.00 0.00 4.00
2207 2243 4.401925 AGAAACAGTGGAGGAAGAAATGG 58.598 43.478 0.00 0.00 0.00 3.16
2208 2244 6.396829 AAAGAAACAGTGGAGGAAGAAATG 57.603 37.500 0.00 0.00 0.00 2.32
2209 2245 7.423844 AAAAAGAAACAGTGGAGGAAGAAAT 57.576 32.000 0.00 0.00 0.00 2.17
2210 2246 6.404293 CGAAAAAGAAACAGTGGAGGAAGAAA 60.404 38.462 0.00 0.00 0.00 2.52
2211 2247 5.065988 CGAAAAAGAAACAGTGGAGGAAGAA 59.934 40.000 0.00 0.00 0.00 2.52
2212 2248 4.574828 CGAAAAAGAAACAGTGGAGGAAGA 59.425 41.667 0.00 0.00 0.00 2.87
2213 2249 4.335594 ACGAAAAAGAAACAGTGGAGGAAG 59.664 41.667 0.00 0.00 0.00 3.46
2214 2250 4.266714 ACGAAAAAGAAACAGTGGAGGAA 58.733 39.130 0.00 0.00 0.00 3.36
2215 2251 3.881220 ACGAAAAAGAAACAGTGGAGGA 58.119 40.909 0.00 0.00 0.00 3.71
2216 2252 4.632538 AACGAAAAAGAAACAGTGGAGG 57.367 40.909 0.00 0.00 0.00 4.30
2217 2253 6.322491 AGAAAACGAAAAAGAAACAGTGGAG 58.678 36.000 0.00 0.00 0.00 3.86
2218 2254 6.262193 AGAAAACGAAAAAGAAACAGTGGA 57.738 33.333 0.00 0.00 0.00 4.02
2219 2255 6.944557 AAGAAAACGAAAAAGAAACAGTGG 57.055 33.333 0.00 0.00 0.00 4.00
2343 2379 9.243637 CGAATTTGAAAGAAATAAGTTCCACAA 57.756 29.630 0.00 0.00 36.86 3.33
2344 2380 7.865385 CCGAATTTGAAAGAAATAAGTTCCACA 59.135 33.333 0.00 0.00 36.86 4.17
2345 2381 7.328493 CCCGAATTTGAAAGAAATAAGTTCCAC 59.672 37.037 0.00 0.00 36.86 4.02
2346 2382 7.231722 TCCCGAATTTGAAAGAAATAAGTTCCA 59.768 33.333 0.00 0.00 36.86 3.53
2347 2383 7.599171 TCCCGAATTTGAAAGAAATAAGTTCC 58.401 34.615 0.00 0.00 36.86 3.62
2348 2384 8.912658 GTTCCCGAATTTGAAAGAAATAAGTTC 58.087 33.333 0.00 0.00 36.38 3.01
2349 2385 8.638873 AGTTCCCGAATTTGAAAGAAATAAGTT 58.361 29.630 0.00 0.00 0.00 2.66
2350 2386 8.178313 AGTTCCCGAATTTGAAAGAAATAAGT 57.822 30.769 0.00 0.00 0.00 2.24
2351 2387 9.476202 AAAGTTCCCGAATTTGAAAGAAATAAG 57.524 29.630 0.00 0.00 0.00 1.73
2352 2388 9.825109 AAAAGTTCCCGAATTTGAAAGAAATAA 57.175 25.926 0.00 0.00 0.00 1.40
2353 2389 9.825109 AAAAAGTTCCCGAATTTGAAAGAAATA 57.175 25.926 0.00 0.00 0.00 1.40
2354 2390 8.731275 AAAAAGTTCCCGAATTTGAAAGAAAT 57.269 26.923 0.00 0.00 0.00 2.17
2377 2413 7.278868 ACAAAAAGGCGTTCATGAATACAAAAA 59.721 29.630 12.12 0.00 0.00 1.94
2378 2414 6.758886 ACAAAAAGGCGTTCATGAATACAAAA 59.241 30.769 12.12 0.00 0.00 2.44
2379 2415 6.276847 ACAAAAAGGCGTTCATGAATACAAA 58.723 32.000 12.12 0.00 0.00 2.83
2380 2416 5.837437 ACAAAAAGGCGTTCATGAATACAA 58.163 33.333 12.12 0.00 0.00 2.41
2381 2417 5.446143 ACAAAAAGGCGTTCATGAATACA 57.554 34.783 12.12 0.00 0.00 2.29
2382 2418 6.763303 AAACAAAAAGGCGTTCATGAATAC 57.237 33.333 12.12 6.77 0.00 1.89
2383 2419 7.778470 AAAAACAAAAAGGCGTTCATGAATA 57.222 28.000 12.12 0.00 0.00 1.75
2384 2420 6.676237 AAAAACAAAAAGGCGTTCATGAAT 57.324 29.167 12.12 0.00 0.00 2.57
2418 2454 8.447053 GCTACAAAAAGTTCATGGTTTTGAAAA 58.553 29.630 21.16 0.00 42.28 2.29
2419 2455 7.604164 TGCTACAAAAAGTTCATGGTTTTGAAA 59.396 29.630 21.16 12.86 42.28 2.69
2420 2456 7.099764 TGCTACAAAAAGTTCATGGTTTTGAA 58.900 30.769 21.16 0.00 42.28 2.69
2421 2457 6.634805 TGCTACAAAAAGTTCATGGTTTTGA 58.365 32.000 21.16 10.83 42.28 2.69
2422 2458 6.534793 ACTGCTACAAAAAGTTCATGGTTTTG 59.465 34.615 16.41 16.41 44.22 2.44
2423 2459 6.534793 CACTGCTACAAAAAGTTCATGGTTTT 59.465 34.615 0.00 0.00 0.00 2.43
2424 2460 6.042143 CACTGCTACAAAAAGTTCATGGTTT 58.958 36.000 0.00 0.00 0.00 3.27
2425 2461 5.359576 TCACTGCTACAAAAAGTTCATGGTT 59.640 36.000 0.00 0.00 0.00 3.67
2426 2462 4.887071 TCACTGCTACAAAAAGTTCATGGT 59.113 37.500 0.00 0.00 0.00 3.55
2427 2463 5.437289 TCACTGCTACAAAAAGTTCATGG 57.563 39.130 0.00 0.00 0.00 3.66
2428 2464 7.935338 AATTCACTGCTACAAAAAGTTCATG 57.065 32.000 0.00 0.00 0.00 3.07
2429 2465 8.947055 AAAATTCACTGCTACAAAAAGTTCAT 57.053 26.923 0.00 0.00 0.00 2.57
2430 2466 8.770438 AAAAATTCACTGCTACAAAAAGTTCA 57.230 26.923 0.00 0.00 0.00 3.18
2475 2511 9.090692 CATGAAATTGAAAGAAGTTCACAAACT 57.909 29.630 5.50 1.27 46.09 2.66
2476 2512 9.086336 TCATGAAATTGAAAGAAGTTCACAAAC 57.914 29.630 5.50 5.95 46.09 2.93
2477 2513 9.650539 TTCATGAAATTGAAAGAAGTTCACAAA 57.349 25.926 5.45 0.00 46.09 2.83
2478 2514 9.086336 GTTCATGAAATTGAAAGAAGTTCACAA 57.914 29.630 10.35 8.79 46.09 3.33
2479 2515 8.469200 AGTTCATGAAATTGAAAGAAGTTCACA 58.531 29.630 10.35 0.00 46.09 3.58
2480 2516 8.862550 AGTTCATGAAATTGAAAGAAGTTCAC 57.137 30.769 10.35 0.00 46.09 3.18
2481 2517 9.874205 AAAGTTCATGAAATTGAAAGAAGTTCA 57.126 25.926 20.76 0.00 44.74 3.18
2508 2544 9.231297 TGAAAGGAGTTCAAGAATTCGATAAAT 57.769 29.630 0.00 0.00 43.43 1.40
2509 2545 8.615878 TGAAAGGAGTTCAAGAATTCGATAAA 57.384 30.769 0.00 0.00 43.43 1.40
2522 2558 6.095720 ACAAACGGTAATTTGAAAGGAGTTCA 59.904 34.615 5.30 0.00 44.74 3.18
2523 2559 6.500910 ACAAACGGTAATTTGAAAGGAGTTC 58.499 36.000 5.30 0.00 41.28 3.01
2524 2560 6.459670 ACAAACGGTAATTTGAAAGGAGTT 57.540 33.333 5.30 0.00 41.28 3.01
2525 2561 6.459670 AACAAACGGTAATTTGAAAGGAGT 57.540 33.333 5.30 0.00 41.28 3.85
2526 2562 6.975772 TGAAACAAACGGTAATTTGAAAGGAG 59.024 34.615 5.30 0.00 41.28 3.69
2527 2563 6.864342 TGAAACAAACGGTAATTTGAAAGGA 58.136 32.000 5.30 0.00 41.28 3.36
2528 2564 7.527084 TTGAAACAAACGGTAATTTGAAAGG 57.473 32.000 5.30 0.00 41.28 3.11
2529 2565 9.813080 TTTTTGAAACAAACGGTAATTTGAAAG 57.187 25.926 5.30 0.00 41.28 2.62
2532 2568 9.760660 CAATTTTTGAAACAAACGGTAATTTGA 57.239 25.926 5.30 0.00 41.28 2.69
2533 2569 9.760660 TCAATTTTTGAAACAAACGGTAATTTG 57.239 25.926 0.00 0.00 39.76 2.32
2549 2585 6.720343 TGATCGACGTCTTTTCAATTTTTGA 58.280 32.000 14.70 0.00 38.04 2.69
2550 2586 6.968004 TGATCGACGTCTTTTCAATTTTTG 57.032 33.333 14.70 0.00 0.00 2.44
2551 2587 6.970043 TGTTGATCGACGTCTTTTCAATTTTT 59.030 30.769 20.30 0.00 0.00 1.94
2552 2588 6.491394 TGTTGATCGACGTCTTTTCAATTTT 58.509 32.000 20.30 0.00 0.00 1.82
2553 2589 6.055231 TGTTGATCGACGTCTTTTCAATTT 57.945 33.333 20.30 0.00 0.00 1.82
2554 2590 5.334105 CCTGTTGATCGACGTCTTTTCAATT 60.334 40.000 20.30 0.00 0.00 2.32
2555 2591 4.152402 CCTGTTGATCGACGTCTTTTCAAT 59.848 41.667 20.30 4.71 0.00 2.57
2556 2592 3.493129 CCTGTTGATCGACGTCTTTTCAA 59.507 43.478 14.70 15.54 0.00 2.69
2557 2593 3.057019 CCTGTTGATCGACGTCTTTTCA 58.943 45.455 14.70 10.53 0.00 2.69
2558 2594 2.159827 GCCTGTTGATCGACGTCTTTTC 60.160 50.000 14.70 8.03 0.00 2.29
2559 2595 1.798813 GCCTGTTGATCGACGTCTTTT 59.201 47.619 14.70 0.00 0.00 2.27
2560 2596 1.429463 GCCTGTTGATCGACGTCTTT 58.571 50.000 14.70 0.00 0.00 2.52
2561 2597 0.389948 GGCCTGTTGATCGACGTCTT 60.390 55.000 14.70 0.13 0.00 3.01
2562 2598 1.215647 GGCCTGTTGATCGACGTCT 59.784 57.895 14.70 0.00 0.00 4.18
2563 2599 0.389948 AAGGCCTGTTGATCGACGTC 60.390 55.000 5.69 5.18 0.00 4.34
2564 2600 0.892755 TAAGGCCTGTTGATCGACGT 59.107 50.000 5.69 0.00 0.00 4.34
2565 2601 1.278238 GTAAGGCCTGTTGATCGACG 58.722 55.000 5.69 3.68 0.00 5.12
2566 2602 1.278238 CGTAAGGCCTGTTGATCGAC 58.722 55.000 5.69 6.11 0.00 4.20
2567 2603 3.733236 CGTAAGGCCTGTTGATCGA 57.267 52.632 5.69 0.00 0.00 3.59
2575 2611 6.556391 CTTGACAACAAACCGTAAGGCCTG 62.556 50.000 5.69 0.00 46.20 4.85
2576 2612 4.549633 CTTGACAACAAACCGTAAGGCCT 61.550 47.826 0.00 0.00 46.20 5.19
2577 2613 2.287368 CTTGACAACAAACCGTAAGGCC 60.287 50.000 0.00 0.00 46.20 5.19
2578 2614 2.287368 CCTTGACAACAAACCGTAAGGC 60.287 50.000 0.00 0.00 46.20 4.35
2579 2615 2.946990 ACCTTGACAACAAACCGTAAGG 59.053 45.455 0.00 0.00 46.99 2.69
2580 2616 3.623960 TGACCTTGACAACAAACCGTAAG 59.376 43.478 0.00 0.00 35.49 2.34
2581 2617 3.607741 TGACCTTGACAACAAACCGTAA 58.392 40.909 0.00 0.00 35.49 3.18
2582 2618 3.263489 TGACCTTGACAACAAACCGTA 57.737 42.857 0.00 0.00 35.49 4.02
2583 2619 2.116827 TGACCTTGACAACAAACCGT 57.883 45.000 0.00 0.00 35.49 4.83
2584 2620 2.478879 GGTTGACCTTGACAACAAACCG 60.479 50.000 0.00 0.00 46.16 4.44
2585 2621 2.758423 AGGTTGACCTTGACAACAAACC 59.242 45.455 0.00 5.39 46.09 3.27
2597 2633 8.216387 GTTTGTTGAAACTTGAAAGGTTGACCT 61.216 37.037 0.00 0.00 42.30 3.85
2598 2634 5.066968 TGTTGAAACTTGAAAGGTTGACC 57.933 39.130 0.00 0.00 35.74 4.02
2599 2635 6.422400 TGTTTGTTGAAACTTGAAAGGTTGAC 59.578 34.615 0.00 0.00 41.87 3.18
2600 2636 6.516718 TGTTTGTTGAAACTTGAAAGGTTGA 58.483 32.000 0.00 0.00 41.87 3.18
2601 2637 6.777526 TGTTTGTTGAAACTTGAAAGGTTG 57.222 33.333 0.00 0.00 41.87 3.77
2602 2638 7.793927 TTTGTTTGTTGAAACTTGAAAGGTT 57.206 28.000 0.00 0.00 41.87 3.50
2603 2639 7.148656 CGATTTGTTTGTTGAAACTTGAAAGGT 60.149 33.333 0.00 0.00 41.87 3.50
2604 2640 7.062839 TCGATTTGTTTGTTGAAACTTGAAAGG 59.937 33.333 0.00 0.00 41.87 3.11
2605 2641 7.948137 TCGATTTGTTTGTTGAAACTTGAAAG 58.052 30.769 0.00 0.00 41.87 2.62
2606 2642 7.411372 GCTCGATTTGTTTGTTGAAACTTGAAA 60.411 33.333 0.00 0.00 41.87 2.69
2607 2643 6.034470 GCTCGATTTGTTTGTTGAAACTTGAA 59.966 34.615 0.00 0.00 41.87 2.69
2608 2644 5.514914 GCTCGATTTGTTTGTTGAAACTTGA 59.485 36.000 0.00 0.00 41.87 3.02
2609 2645 5.552472 CGCTCGATTTGTTTGTTGAAACTTG 60.552 40.000 0.00 0.00 41.87 3.16
2610 2646 4.499040 CGCTCGATTTGTTTGTTGAAACTT 59.501 37.500 0.00 0.00 41.87 2.66
2611 2647 4.035017 CGCTCGATTTGTTTGTTGAAACT 58.965 39.130 0.00 0.00 41.87 2.66
2612 2648 4.032355 TCGCTCGATTTGTTTGTTGAAAC 58.968 39.130 0.00 0.00 41.72 2.78
2613 2649 4.278858 CTCGCTCGATTTGTTTGTTGAAA 58.721 39.130 0.00 0.00 0.00 2.69
2614 2650 3.848191 GCTCGCTCGATTTGTTTGTTGAA 60.848 43.478 0.00 0.00 0.00 2.69
2615 2651 2.349438 GCTCGCTCGATTTGTTTGTTGA 60.349 45.455 0.00 0.00 0.00 3.18
2616 2652 1.971962 GCTCGCTCGATTTGTTTGTTG 59.028 47.619 0.00 0.00 0.00 3.33
2617 2653 1.398451 CGCTCGCTCGATTTGTTTGTT 60.398 47.619 0.00 0.00 0.00 2.83
2618 2654 0.163788 CGCTCGCTCGATTTGTTTGT 59.836 50.000 0.00 0.00 0.00 2.83
2619 2655 0.163788 ACGCTCGCTCGATTTGTTTG 59.836 50.000 3.28 0.00 0.00 2.93
2620 2656 0.865769 AACGCTCGCTCGATTTGTTT 59.134 45.000 3.28 0.00 0.00 2.83
2621 2657 0.163788 CAACGCTCGCTCGATTTGTT 59.836 50.000 3.28 0.00 0.00 2.83
2622 2658 0.944311 ACAACGCTCGCTCGATTTGT 60.944 50.000 3.28 7.70 0.00 2.83
2623 2659 0.163788 AACAACGCTCGCTCGATTTG 59.836 50.000 3.28 0.47 0.00 2.32
2624 2660 0.438830 GAACAACGCTCGCTCGATTT 59.561 50.000 3.28 0.00 0.00 2.17
2625 2661 0.388649 AGAACAACGCTCGCTCGATT 60.389 50.000 3.28 0.00 0.00 3.34
2626 2662 0.388649 AAGAACAACGCTCGCTCGAT 60.389 50.000 3.28 0.00 0.00 3.59
2627 2663 0.596600 AAAGAACAACGCTCGCTCGA 60.597 50.000 3.28 0.00 0.00 4.04
2628 2664 0.232303 AAAAGAACAACGCTCGCTCG 59.768 50.000 0.00 0.00 0.00 5.03
2629 2665 2.036933 CAAAAAGAACAACGCTCGCTC 58.963 47.619 0.00 0.00 0.00 5.03
2630 2666 1.668751 TCAAAAAGAACAACGCTCGCT 59.331 42.857 0.00 0.00 0.00 4.93
2631 2667 2.099633 TCAAAAAGAACAACGCTCGC 57.900 45.000 0.00 0.00 0.00 5.03
2632 2668 4.394795 CCTATCAAAAAGAACAACGCTCG 58.605 43.478 0.00 0.00 0.00 5.03
2633 2669 4.159120 GCCTATCAAAAAGAACAACGCTC 58.841 43.478 0.00 0.00 0.00 5.03
2634 2670 3.057526 GGCCTATCAAAAAGAACAACGCT 60.058 43.478 0.00 0.00 0.00 5.07
2635 2671 3.242518 GGCCTATCAAAAAGAACAACGC 58.757 45.455 0.00 0.00 0.00 4.84
2636 2672 3.488489 CGGCCTATCAAAAAGAACAACG 58.512 45.455 0.00 0.00 0.00 4.10
2637 2673 3.254903 ACCGGCCTATCAAAAAGAACAAC 59.745 43.478 0.00 0.00 0.00 3.32
2638 2674 3.492337 ACCGGCCTATCAAAAAGAACAA 58.508 40.909 0.00 0.00 0.00 2.83
2639 2675 3.149005 ACCGGCCTATCAAAAAGAACA 57.851 42.857 0.00 0.00 0.00 3.18
2640 2676 3.504520 TGAACCGGCCTATCAAAAAGAAC 59.495 43.478 0.00 0.00 0.00 3.01
2641 2677 3.757270 TGAACCGGCCTATCAAAAAGAA 58.243 40.909 0.00 0.00 0.00 2.52
2642 2678 3.426787 TGAACCGGCCTATCAAAAAGA 57.573 42.857 0.00 0.00 0.00 2.52
2643 2679 4.718940 ATTGAACCGGCCTATCAAAAAG 57.281 40.909 15.73 0.00 36.72 2.27
2644 2680 4.524714 TCAATTGAACCGGCCTATCAAAAA 59.475 37.500 15.73 5.15 36.72 1.94
2645 2681 4.082463 GTCAATTGAACCGGCCTATCAAAA 60.082 41.667 10.35 5.42 36.72 2.44
2646 2682 3.442273 GTCAATTGAACCGGCCTATCAAA 59.558 43.478 10.35 0.05 36.72 2.69
2647 2683 3.013921 GTCAATTGAACCGGCCTATCAA 58.986 45.455 10.35 14.57 37.47 2.57
2648 2684 2.639065 GTCAATTGAACCGGCCTATCA 58.361 47.619 10.35 0.00 0.00 2.15
2649 2685 1.947456 GGTCAATTGAACCGGCCTATC 59.053 52.381 12.76 0.00 0.00 2.08
2650 2686 1.283613 TGGTCAATTGAACCGGCCTAT 59.716 47.619 20.61 0.00 0.00 2.57
2651 2687 0.693622 TGGTCAATTGAACCGGCCTA 59.306 50.000 20.61 0.00 0.00 3.93
2652 2688 0.039618 ATGGTCAATTGAACCGGCCT 59.960 50.000 20.61 0.00 0.00 5.19
2653 2689 0.173255 CATGGTCAATTGAACCGGCC 59.827 55.000 20.61 12.45 0.00 6.13
2654 2690 0.458370 GCATGGTCAATTGAACCGGC 60.458 55.000 20.61 18.77 0.00 6.13
2655 2691 0.179166 CGCATGGTCAATTGAACCGG 60.179 55.000 20.61 13.24 0.00 5.28
2656 2692 0.521291 ACGCATGGTCAATTGAACCG 59.479 50.000 20.61 18.05 0.00 4.44
2657 2693 1.269448 ACACGCATGGTCAATTGAACC 59.731 47.619 20.61 17.88 0.00 3.62
2658 2694 2.704725 ACACGCATGGTCAATTGAAC 57.295 45.000 16.88 16.88 0.00 3.18
2659 2695 2.861750 GCAACACGCATGGTCAATTGAA 60.862 45.455 10.35 0.00 41.79 2.69
2660 2696 1.335780 GCAACACGCATGGTCAATTGA 60.336 47.619 3.38 3.38 41.79 2.57
2661 2697 1.062258 GCAACACGCATGGTCAATTG 58.938 50.000 0.00 0.00 41.79 2.32
2662 2698 0.387112 CGCAACACGCATGGTCAATT 60.387 50.000 0.00 0.00 42.60 2.32
2663 2699 1.209898 CGCAACACGCATGGTCAAT 59.790 52.632 0.00 0.00 42.60 2.57
2664 2700 2.636462 CGCAACACGCATGGTCAA 59.364 55.556 0.00 0.00 42.60 3.18
2676 2712 0.920664 GTTCAACTTGTTGGCGCAAC 59.079 50.000 10.83 12.57 43.78 4.17
2677 2713 0.814457 AGTTCAACTTGTTGGCGCAA 59.186 45.000 10.83 0.00 0.00 4.85
2678 2714 1.601903 CTAGTTCAACTTGTTGGCGCA 59.398 47.619 10.83 0.00 0.00 6.09
2679 2715 1.663161 GCTAGTTCAACTTGTTGGCGC 60.663 52.381 12.75 0.00 0.00 6.53
2680 2716 1.398451 CGCTAGTTCAACTTGTTGGCG 60.398 52.381 15.30 15.30 0.00 5.69
2681 2717 1.663161 GCGCTAGTTCAACTTGTTGGC 60.663 52.381 12.75 7.42 0.00 4.52
2682 2718 1.873591 AGCGCTAGTTCAACTTGTTGG 59.126 47.619 8.99 0.00 0.00 3.77
2683 2719 3.609103 AAGCGCTAGTTCAACTTGTTG 57.391 42.857 12.05 7.13 0.00 3.33
2684 2720 4.213482 CCTTAAGCGCTAGTTCAACTTGTT 59.787 41.667 12.05 0.00 0.00 2.83
2685 2721 3.746492 CCTTAAGCGCTAGTTCAACTTGT 59.254 43.478 12.05 0.00 0.00 3.16
2686 2722 3.424962 GCCTTAAGCGCTAGTTCAACTTG 60.425 47.826 12.05 0.00 0.00 3.16
2687 2723 2.742589 GCCTTAAGCGCTAGTTCAACTT 59.257 45.455 12.05 0.00 0.00 2.66
2688 2724 2.347731 GCCTTAAGCGCTAGTTCAACT 58.652 47.619 12.05 0.00 0.00 3.16
2689 2725 2.808157 GCCTTAAGCGCTAGTTCAAC 57.192 50.000 12.05 0.00 0.00 3.18
2700 2736 2.171725 CCTGTACGGCGCCTTAAGC 61.172 63.158 26.68 9.27 38.52 3.09
2701 2737 1.082117 CACCTGTACGGCGCCTTAAG 61.082 60.000 26.68 17.66 35.61 1.85
2702 2738 1.079681 CACCTGTACGGCGCCTTAA 60.080 57.895 26.68 6.49 35.61 1.85
2703 2739 1.534336 TTCACCTGTACGGCGCCTTA 61.534 55.000 26.68 17.99 35.61 2.69
2704 2740 2.386064 TTTCACCTGTACGGCGCCTT 62.386 55.000 26.68 19.30 35.61 4.35
2705 2741 2.180159 ATTTCACCTGTACGGCGCCT 62.180 55.000 26.68 14.27 35.61 5.52
2706 2742 1.702491 GATTTCACCTGTACGGCGCC 61.702 60.000 19.07 19.07 35.61 6.53
2707 2743 1.017177 TGATTTCACCTGTACGGCGC 61.017 55.000 6.90 0.00 35.61 6.53
2708 2744 0.719465 GTGATTTCACCTGTACGGCG 59.281 55.000 4.80 4.80 40.85 6.46
2717 2753 7.842133 GAGTACTCCTCAACTAGTGATTTCACC 60.842 44.444 12.13 0.00 42.58 4.02
2718 2754 6.926313 AGTACTCCTCAACTAGTGATTTCAC 58.074 40.000 0.00 2.41 46.77 3.18
2719 2755 6.127980 CGAGTACTCCTCAACTAGTGATTTCA 60.128 42.308 17.23 0.00 40.48 2.69
2720 2756 6.127952 ACGAGTACTCCTCAACTAGTGATTTC 60.128 42.308 17.23 0.00 40.48 2.17
2721 2757 5.711036 ACGAGTACTCCTCAACTAGTGATTT 59.289 40.000 17.23 0.00 40.48 2.17
2722 2758 5.254901 ACGAGTACTCCTCAACTAGTGATT 58.745 41.667 17.23 0.00 40.48 2.57
2723 2759 4.846040 ACGAGTACTCCTCAACTAGTGAT 58.154 43.478 17.23 0.00 40.48 3.06
2724 2760 4.283363 ACGAGTACTCCTCAACTAGTGA 57.717 45.455 17.23 0.00 40.48 3.41
2725 2761 4.724303 CAACGAGTACTCCTCAACTAGTG 58.276 47.826 17.23 1.71 40.48 2.74
2726 2762 3.190953 GCAACGAGTACTCCTCAACTAGT 59.809 47.826 17.23 3.77 40.48 2.57
2727 2763 3.190744 TGCAACGAGTACTCCTCAACTAG 59.809 47.826 17.23 3.13 40.48 2.57
2728 2764 3.151554 TGCAACGAGTACTCCTCAACTA 58.848 45.455 17.23 0.00 40.48 2.24
2729 2765 1.961394 TGCAACGAGTACTCCTCAACT 59.039 47.619 17.23 0.00 40.48 3.16
2730 2766 2.433868 TGCAACGAGTACTCCTCAAC 57.566 50.000 17.23 4.22 40.48 3.18
2731 2767 3.069016 TCTTTGCAACGAGTACTCCTCAA 59.931 43.478 17.23 12.14 40.48 3.02
2732 2768 2.626266 TCTTTGCAACGAGTACTCCTCA 59.374 45.455 17.23 7.05 40.48 3.86
2733 2769 3.299340 TCTTTGCAACGAGTACTCCTC 57.701 47.619 17.23 4.60 36.80 3.71
2734 2770 3.258372 TGATCTTTGCAACGAGTACTCCT 59.742 43.478 17.23 2.73 0.00 3.69
2735 2771 3.368236 GTGATCTTTGCAACGAGTACTCC 59.632 47.826 17.23 3.69 0.00 3.85
2736 2772 4.238514 AGTGATCTTTGCAACGAGTACTC 58.761 43.478 13.18 13.18 0.00 2.59
2737 2773 4.238514 GAGTGATCTTTGCAACGAGTACT 58.761 43.478 18.57 18.57 0.00 2.73
2738 2774 3.368236 GGAGTGATCTTTGCAACGAGTAC 59.632 47.826 11.57 11.75 0.00 2.73
2739 2775 3.006430 TGGAGTGATCTTTGCAACGAGTA 59.994 43.478 11.57 0.27 0.00 2.59
2740 2776 2.224281 TGGAGTGATCTTTGCAACGAGT 60.224 45.455 11.57 0.34 0.00 4.18
2741 2777 2.416747 TGGAGTGATCTTTGCAACGAG 58.583 47.619 11.57 1.70 0.00 4.18
2742 2778 2.542020 TGGAGTGATCTTTGCAACGA 57.458 45.000 8.20 8.20 0.00 3.85
2743 2779 2.549754 AGTTGGAGTGATCTTTGCAACG 59.450 45.455 20.03 0.00 46.26 4.10
2744 2780 3.817647 AGAGTTGGAGTGATCTTTGCAAC 59.182 43.478 19.22 19.22 43.36 4.17
2745 2781 4.067896 GAGAGTTGGAGTGATCTTTGCAA 58.932 43.478 0.00 0.00 0.00 4.08
2746 2782 3.557898 GGAGAGTTGGAGTGATCTTTGCA 60.558 47.826 0.00 0.00 0.00 4.08
2747 2783 3.006247 GGAGAGTTGGAGTGATCTTTGC 58.994 50.000 0.00 0.00 0.00 3.68
2748 2784 4.277515 TGGAGAGTTGGAGTGATCTTTG 57.722 45.455 0.00 0.00 0.00 2.77
2749 2785 4.288105 ACATGGAGAGTTGGAGTGATCTTT 59.712 41.667 0.00 0.00 0.00 2.52
2750 2786 3.843027 ACATGGAGAGTTGGAGTGATCTT 59.157 43.478 0.00 0.00 0.00 2.40
2751 2787 3.448934 ACATGGAGAGTTGGAGTGATCT 58.551 45.455 0.00 0.00 0.00 2.75
2752 2788 3.902881 ACATGGAGAGTTGGAGTGATC 57.097 47.619 0.00 0.00 0.00 2.92
2753 2789 3.947868 CAACATGGAGAGTTGGAGTGAT 58.052 45.455 0.00 0.00 41.92 3.06
2754 2790 3.407424 CAACATGGAGAGTTGGAGTGA 57.593 47.619 0.00 0.00 41.92 3.41
2761 2797 3.879295 CACTTGTCACAACATGGAGAGTT 59.121 43.478 0.00 0.00 35.43 3.01
2762 2798 3.470709 CACTTGTCACAACATGGAGAGT 58.529 45.455 0.00 0.00 35.43 3.24
2763 2799 2.810274 CCACTTGTCACAACATGGAGAG 59.190 50.000 9.70 0.00 37.63 3.20
2764 2800 2.849942 CCACTTGTCACAACATGGAGA 58.150 47.619 9.70 0.00 37.63 3.71
2765 2801 1.267806 GCCACTTGTCACAACATGGAG 59.732 52.381 17.19 0.00 37.63 3.86
2766 2802 1.317613 GCCACTTGTCACAACATGGA 58.682 50.000 17.19 0.00 37.63 3.41
2767 2803 0.040157 CGCCACTTGTCACAACATGG 60.040 55.000 10.67 10.67 38.21 3.66
2768 2804 0.661187 GCGCCACTTGTCACAACATG 60.661 55.000 0.00 0.00 34.73 3.21
2769 2805 1.100463 TGCGCCACTTGTCACAACAT 61.100 50.000 4.18 0.00 34.73 2.71
2770 2806 1.746991 TGCGCCACTTGTCACAACA 60.747 52.632 4.18 0.00 0.00 3.33
2771 2807 1.298339 GTGCGCCACTTGTCACAAC 60.298 57.895 4.18 0.00 0.00 3.32
2772 2808 1.100463 ATGTGCGCCACTTGTCACAA 61.100 50.000 4.18 0.00 41.92 3.33
2773 2809 1.525765 ATGTGCGCCACTTGTCACA 60.526 52.632 4.18 0.00 42.66 3.58
2774 2810 1.081906 CATGTGCGCCACTTGTCAC 60.082 57.895 4.18 0.00 35.64 3.67
2775 2811 2.906939 GCATGTGCGCCACTTGTCA 61.907 57.895 4.18 0.00 40.25 3.58
2776 2812 2.126734 GCATGTGCGCCACTTGTC 60.127 61.111 4.18 5.08 40.25 3.18
2777 2813 2.906388 TGCATGTGCGCCACTTGT 60.906 55.556 4.18 0.00 45.83 3.16
2778 2814 2.126618 CTGCATGTGCGCCACTTG 60.127 61.111 4.18 12.50 45.83 3.16
2779 2815 4.047059 GCTGCATGTGCGCCACTT 62.047 61.111 4.18 0.00 45.83 3.16
2799 2835 2.639286 CAGGTTGCGACAAGTGGC 59.361 61.111 6.39 0.00 34.76 5.01
2800 2836 0.817634 TTCCAGGTTGCGACAAGTGG 60.818 55.000 6.39 9.48 0.00 4.00
2801 2837 0.588252 CTTCCAGGTTGCGACAAGTG 59.412 55.000 6.39 0.00 0.00 3.16
2802 2838 0.180406 ACTTCCAGGTTGCGACAAGT 59.820 50.000 6.39 4.12 0.00 3.16
2803 2839 1.308998 AACTTCCAGGTTGCGACAAG 58.691 50.000 6.39 3.46 0.00 3.16
2804 2840 1.757682 AAACTTCCAGGTTGCGACAA 58.242 45.000 6.39 0.00 0.00 3.18
2805 2841 1.757682 AAAACTTCCAGGTTGCGACA 58.242 45.000 6.39 0.00 0.00 4.35
2806 2842 2.543031 GGAAAAACTTCCAGGTTGCGAC 60.543 50.000 0.00 0.00 40.79 5.19
2807 2843 1.679153 GGAAAAACTTCCAGGTTGCGA 59.321 47.619 0.00 0.00 40.79 5.10
2808 2844 1.269569 GGGAAAAACTTCCAGGTTGCG 60.270 52.381 6.26 0.00 42.89 4.85
2809 2845 2.039418 AGGGAAAAACTTCCAGGTTGC 58.961 47.619 6.26 0.00 42.89 4.17
2810 2846 4.753516 AAAGGGAAAAACTTCCAGGTTG 57.246 40.909 6.26 0.00 42.89 3.77
2811 2847 5.772393 AAAAAGGGAAAAACTTCCAGGTT 57.228 34.783 6.26 0.00 42.89 3.50
2852 2888 7.744715 CGCATAGTTTGAGAGATAAAACGTTTT 59.255 33.333 27.65 27.65 0.00 2.43
2853 2889 7.095355 ACGCATAGTTTGAGAGATAAAACGTTT 60.095 33.333 7.96 7.96 0.00 3.60
2854 2890 6.367969 ACGCATAGTTTGAGAGATAAAACGTT 59.632 34.615 0.00 0.00 0.00 3.99
2855 2891 5.867716 ACGCATAGTTTGAGAGATAAAACGT 59.132 36.000 0.00 0.00 0.00 3.99
2856 2892 6.332504 ACGCATAGTTTGAGAGATAAAACG 57.667 37.500 0.00 0.00 0.00 3.60
2857 2893 6.312918 TGGACGCATAGTTTGAGAGATAAAAC 59.687 38.462 0.00 0.00 0.00 2.43
2858 2894 6.403049 TGGACGCATAGTTTGAGAGATAAAA 58.597 36.000 0.00 0.00 0.00 1.52
2859 2895 5.972935 TGGACGCATAGTTTGAGAGATAAA 58.027 37.500 0.00 0.00 0.00 1.40
2860 2896 5.592104 TGGACGCATAGTTTGAGAGATAA 57.408 39.130 0.00 0.00 0.00 1.75
2861 2897 5.592104 TTGGACGCATAGTTTGAGAGATA 57.408 39.130 0.00 0.00 0.00 1.98
2862 2898 4.471904 TTGGACGCATAGTTTGAGAGAT 57.528 40.909 0.00 0.00 0.00 2.75
2863 2899 3.953712 TTGGACGCATAGTTTGAGAGA 57.046 42.857 0.00 0.00 0.00 3.10
2864 2900 4.872691 AGATTTGGACGCATAGTTTGAGAG 59.127 41.667 0.00 0.00 0.00 3.20
2865 2901 4.832248 AGATTTGGACGCATAGTTTGAGA 58.168 39.130 0.00 0.00 0.00 3.27
2866 2902 4.631377 TGAGATTTGGACGCATAGTTTGAG 59.369 41.667 0.00 0.00 0.00 3.02
2867 2903 4.574892 TGAGATTTGGACGCATAGTTTGA 58.425 39.130 0.00 0.00 0.00 2.69
2868 2904 4.944962 TGAGATTTGGACGCATAGTTTG 57.055 40.909 0.00 0.00 0.00 2.93
2869 2905 5.335661 GGTTTGAGATTTGGACGCATAGTTT 60.336 40.000 0.00 0.00 0.00 2.66
2870 2906 4.156008 GGTTTGAGATTTGGACGCATAGTT 59.844 41.667 0.00 0.00 0.00 2.24
2871 2907 3.689649 GGTTTGAGATTTGGACGCATAGT 59.310 43.478 0.00 0.00 0.00 2.12
2872 2908 3.242413 CGGTTTGAGATTTGGACGCATAG 60.242 47.826 0.00 0.00 0.00 2.23
2873 2909 2.675844 CGGTTTGAGATTTGGACGCATA 59.324 45.455 0.00 0.00 0.00 3.14
2874 2910 1.468520 CGGTTTGAGATTTGGACGCAT 59.531 47.619 0.00 0.00 0.00 4.73
2875 2911 0.871722 CGGTTTGAGATTTGGACGCA 59.128 50.000 0.00 0.00 0.00 5.24
2876 2912 0.454452 GCGGTTTGAGATTTGGACGC 60.454 55.000 0.00 0.00 38.94 5.19
2877 2913 1.156736 AGCGGTTTGAGATTTGGACG 58.843 50.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.