Multiple sequence alignment - TraesCS4D01G075900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G075900 chr4D 100.000 7480 0 0 1 7480 50361744 50354265 0.000000e+00 13814.0
1 TraesCS4D01G075900 chr4D 87.887 355 29 7 2463 2803 50358938 50358584 9.040000e-109 405.0
2 TraesCS4D01G075900 chr4D 87.887 355 29 7 2807 3161 50359282 50358942 9.040000e-109 405.0
3 TraesCS4D01G075900 chr4D 79.412 136 25 3 526 660 49908930 49908797 7.990000e-15 93.5
4 TraesCS4D01G075900 chr4A 95.024 4200 161 22 2463 6644 546479413 546483582 0.000000e+00 6554.0
5 TraesCS4D01G075900 chr4A 91.717 2463 160 19 711 3161 546476979 546479409 0.000000e+00 3378.0
6 TraesCS4D01G075900 chr4A 90.714 700 51 8 2463 3159 546479066 546479754 0.000000e+00 920.0
7 TraesCS4D01G075900 chr4A 86.053 674 60 14 1 664 546475927 546476576 0.000000e+00 693.0
8 TraesCS4D01G075900 chr4A 87.606 355 32 5 2807 3161 546478720 546479062 1.170000e-107 401.0
9 TraesCS4D01G075900 chr4A 87.571 354 30 7 2466 2805 546479764 546480117 1.510000e-106 398.0
10 TraesCS4D01G075900 chr4A 87.027 370 16 14 6649 7006 546483654 546484003 9.100000e-104 388.0
11 TraesCS4D01G075900 chr4A 88.854 314 23 4 7007 7312 546484167 546484476 7.090000e-100 375.0
12 TraesCS4D01G075900 chr4A 92.857 56 4 0 605 660 550475820 550475875 1.730000e-11 82.4
13 TraesCS4D01G075900 chr4B 94.537 3716 149 20 3509 7193 74279081 74275389 0.000000e+00 5688.0
14 TraesCS4D01G075900 chr4B 92.778 2340 100 26 772 3093 74281821 74279533 0.000000e+00 3321.0
15 TraesCS4D01G075900 chr4B 92.644 435 23 3 3038 3472 74279504 74279079 1.070000e-172 617.0
16 TraesCS4D01G075900 chr4B 87.079 356 32 10 2807 3161 74280142 74279800 2.530000e-104 390.0
17 TraesCS4D01G075900 chr4B 85.397 315 16 16 2463 2772 74279796 74279507 4.390000e-77 300.0
18 TraesCS4D01G075900 chr4B 88.889 117 9 4 2692 2805 74279503 74279388 2.810000e-29 141.0
19 TraesCS4D01G075900 chr4B 97.619 42 1 0 7243 7284 74275371 74275330 1.040000e-08 73.1
20 TraesCS4D01G075900 chrUn 92.025 163 13 0 7318 7480 92584295 92584133 5.840000e-56 230.0
21 TraesCS4D01G075900 chrUn 93.289 149 9 1 7319 7467 21628378 21628231 1.260000e-52 219.0
22 TraesCS4D01G075900 chr2D 91.411 163 14 0 7318 7480 552085480 552085318 2.720000e-54 224.0
23 TraesCS4D01G075900 chr2D 86.550 171 22 1 7311 7480 103149011 103149181 3.560000e-43 187.0
24 TraesCS4D01G075900 chr7D 91.411 163 12 2 7319 7480 426444288 426444449 9.770000e-54 222.0
25 TraesCS4D01G075900 chr7D 88.957 163 17 1 7318 7480 563541175 563541336 4.580000e-47 200.0
26 TraesCS4D01G075900 chr5B 90.728 151 13 1 7330 7480 378000941 378001090 4.580000e-47 200.0
27 TraesCS4D01G075900 chr5B 90.066 151 14 1 7330 7480 378014491 378014640 2.130000e-45 195.0
28 TraesCS4D01G075900 chr1D 87.730 163 19 1 7319 7480 469881620 469881458 9.910000e-44 189.0
29 TraesCS4D01G075900 chr1A 82.812 128 20 1 533 660 548667723 548667598 6.130000e-21 113.0
30 TraesCS4D01G075900 chr3D 80.690 145 22 5 527 670 613095340 613095201 2.850000e-19 108.0
31 TraesCS4D01G075900 chr2A 85.294 102 15 0 533 634 658469879 658469778 1.030000e-18 106.0
32 TraesCS4D01G075900 chr2B 89.189 74 8 0 585 658 548674153 548674080 7.990000e-15 93.5
33 TraesCS4D01G075900 chr6A 89.231 65 3 4 602 664 97027277 97027215 2.240000e-10 78.7
34 TraesCS4D01G075900 chr3A 85.000 80 9 3 582 660 231668100 231668023 2.240000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G075900 chr4D 50354265 50361744 7479 True 4874.666667 13814 91.924667 1 7480 3 chr4D.!!$R2 7479
1 TraesCS4D01G075900 chr4A 546475927 546484476 8549 False 1638.375000 6554 89.320750 1 7312 8 chr4A.!!$F2 7311
2 TraesCS4D01G075900 chr4B 74275330 74281821 6491 True 1504.300000 5688 91.277571 772 7284 7 chr4B.!!$R1 6512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
809 1172 0.037590 ATAAACCGGCCAACTCAGCA 59.962 50.000 0.0 0.00 0.00 4.41 F
1290 1661 0.739561 CCGGTTTCACACGGGAAAAA 59.260 50.000 0.0 0.00 46.81 1.94 F
1675 2062 0.816421 CTGATGCCATGCCGATGTGA 60.816 55.000 0.0 0.00 0.00 3.58 F
2175 2564 0.818040 ACGAAAGGTGCCACCAAGAC 60.818 55.000 17.8 3.61 41.95 3.01 F
3178 4343 2.977405 AGACATTTGCAAGCTTCGTC 57.023 45.000 0.0 3.69 0.00 4.20 F
3700 4866 3.505680 GTCTCAGTTCTCTCTTCTCTGCA 59.494 47.826 0.0 0.00 0.00 4.41 F
4685 5852 1.471684 CTGAAATGAAGCCTGTGAGCC 59.528 52.381 0.0 0.00 0.00 4.70 F
5887 7072 1.375140 ACAGTGTGCAGATGGAGCG 60.375 57.895 0.0 0.00 33.85 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2557 3293 0.609131 TAAGCCCAGGTCAGCTTTGC 60.609 55.000 6.73 0.00 46.99 3.68 R
2774 3860 2.860136 GGTTTTGTTCAAGCTGAGCAAC 59.140 45.455 7.39 2.93 45.05 4.17 R
3483 4648 1.139058 GGATCCACTCGTGCTATGGTT 59.861 52.381 6.95 0.00 34.89 3.67 R
3676 4842 4.022416 GCAGAGAAGAGAGAACTGAGACAA 60.022 45.833 0.00 0.00 0.00 3.18 R
4685 5852 0.392706 TGTGACCCTGCAGTAGTGTG 59.607 55.000 13.81 0.00 0.00 3.82 R
4951 6118 0.401356 TCACAAGAATGCTGCCCAGA 59.599 50.000 0.00 0.00 0.00 3.86 R
6190 7377 0.389426 GTTTTCCTGCATGCAGCCTG 60.389 55.000 37.11 25.33 44.83 4.85 R
7114 8559 0.037326 CACCATGGTAGCGCCGATAT 60.037 55.000 19.28 0.00 41.21 1.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.113139 AGTGGGTTGTTGCCTCGG 59.887 61.111 0.00 0.00 0.00 4.63
96 97 0.802222 GCGCATCTTAGTCGTGCAGA 60.802 55.000 0.30 0.00 38.75 4.26
98 99 1.565305 GCATCTTAGTCGTGCAGAGG 58.435 55.000 0.00 0.00 38.68 3.69
147 148 4.178540 GTCCTTTTGATGCAACATCATGG 58.821 43.478 10.82 12.61 0.00 3.66
164 165 4.843728 TCATGGGTCAATAAAGAGTGTCC 58.156 43.478 0.00 0.00 0.00 4.02
251 259 5.411493 ACTTTTTCCATAGGGGTTTGGATT 58.589 37.500 0.00 0.00 41.52 3.01
257 265 3.309848 CCATAGGGGTTTGGATTCTTGGT 60.310 47.826 0.00 0.00 34.81 3.67
261 269 3.596046 AGGGGTTTGGATTCTTGGTGATA 59.404 43.478 0.00 0.00 0.00 2.15
290 298 4.338682 GGAGCGGAGATGAAACTAAGAGTA 59.661 45.833 0.00 0.00 0.00 2.59
295 303 6.199342 GCGGAGATGAAACTAAGAGTATGTTC 59.801 42.308 0.00 0.00 0.00 3.18
301 309 9.099454 GATGAAACTAAGAGTATGTTCGGATTT 57.901 33.333 0.00 0.00 0.00 2.17
322 330 1.534235 ACCACTCCTCAACTCCGCT 60.534 57.895 0.00 0.00 0.00 5.52
323 331 1.122019 ACCACTCCTCAACTCCGCTT 61.122 55.000 0.00 0.00 0.00 4.68
350 359 2.571757 CAGAGCGGTGCCGAACTA 59.428 61.111 15.45 0.00 42.83 2.24
358 367 2.870411 GCGGTGCCGAACTATCTAATTT 59.130 45.455 15.45 0.00 42.83 1.82
361 370 4.750098 CGGTGCCGAACTATCTAATTTCAT 59.250 41.667 4.35 0.00 42.83 2.57
381 390 2.582052 TGGAGTTGAAAATGCGGAGTT 58.418 42.857 0.00 0.00 0.00 3.01
383 392 2.552315 GGAGTTGAAAATGCGGAGTTGA 59.448 45.455 0.00 0.00 0.00 3.18
384 393 3.365364 GGAGTTGAAAATGCGGAGTTGAG 60.365 47.826 0.00 0.00 0.00 3.02
385 394 3.214328 AGTTGAAAATGCGGAGTTGAGT 58.786 40.909 0.00 0.00 0.00 3.41
386 395 3.003689 AGTTGAAAATGCGGAGTTGAGTG 59.996 43.478 0.00 0.00 0.00 3.51
387 396 1.879380 TGAAAATGCGGAGTTGAGTGG 59.121 47.619 0.00 0.00 0.00 4.00
388 397 1.880027 GAAAATGCGGAGTTGAGTGGT 59.120 47.619 0.00 0.00 0.00 4.16
389 398 1.981256 AAATGCGGAGTTGAGTGGTT 58.019 45.000 0.00 0.00 0.00 3.67
390 399 1.238439 AATGCGGAGTTGAGTGGTTG 58.762 50.000 0.00 0.00 0.00 3.77
391 400 1.237285 ATGCGGAGTTGAGTGGTTGC 61.237 55.000 0.00 0.00 0.00 4.17
396 405 0.947244 GAGTTGAGTGGTTGCAGTGG 59.053 55.000 0.00 0.00 0.00 4.00
400 409 2.362077 GTTGAGTGGTTGCAGTGGAATT 59.638 45.455 0.00 0.00 0.00 2.17
408 417 1.236616 TGCAGTGGAATTGTGCGGAG 61.237 55.000 0.00 0.00 40.23 4.63
441 450 7.131907 TCCCGGATCTCACATCTTTAAAATA 57.868 36.000 0.73 0.00 0.00 1.40
469 478 8.265055 TGGAGTTGATAAGATTTACGAAGGAAT 58.735 33.333 0.00 0.00 0.00 3.01
470 479 9.110502 GGAGTTGATAAGATTTACGAAGGAATT 57.889 33.333 0.00 0.00 0.00 2.17
477 486 1.444836 TTACGAAGGAATTGCCACCG 58.555 50.000 0.00 0.00 40.02 4.94
524 533 2.092882 CCCGTCTCGCTCGGTTTTC 61.093 63.158 10.64 0.00 45.63 2.29
525 534 1.080705 CCGTCTCGCTCGGTTTTCT 60.081 57.895 4.97 0.00 42.62 2.52
530 539 1.614903 TCTCGCTCGGTTTTCTGGTAA 59.385 47.619 0.00 0.00 0.00 2.85
531 540 2.232941 TCTCGCTCGGTTTTCTGGTAAT 59.767 45.455 0.00 0.00 0.00 1.89
544 553 1.883084 GGTAATGGAGCGGCGACAG 60.883 63.158 12.98 0.00 0.00 3.51
565 574 3.041940 CTTGTCGGCGGCTCGTTT 61.042 61.111 14.51 0.00 0.00 3.60
567 576 2.764251 CTTGTCGGCGGCTCGTTTTG 62.764 60.000 14.51 0.00 0.00 2.44
574 583 3.039588 GGCTCGTTTTGGCGACGA 61.040 61.111 0.00 9.59 46.15 4.20
580 589 0.041663 CGTTTTGGCGACGACAATGT 60.042 50.000 18.44 0.00 42.82 2.71
598 607 1.006832 GTTCGTTCGATGGTCCATGG 58.993 55.000 9.76 8.52 0.00 3.66
611 620 2.381911 GTCCATGGACCTTGATGCAAT 58.618 47.619 31.37 0.00 39.08 3.56
615 624 4.286549 TCCATGGACCTTGATGCAATTTTT 59.713 37.500 11.44 0.00 0.00 1.94
619 628 7.201661 CCATGGACCTTGATGCAATTTTTATTG 60.202 37.037 5.56 0.00 34.79 1.90
626 635 8.557864 CCTTGATGCAATTTTTATTGTGTTTGA 58.442 29.630 0.00 0.00 34.21 2.69
627 636 9.588774 CTTGATGCAATTTTTATTGTGTTTGAG 57.411 29.630 0.00 0.00 34.21 3.02
642 651 6.791303 TGTGTTTGAGATGTTTTGTACTTCC 58.209 36.000 0.00 0.00 32.71 3.46
643 652 6.375736 TGTGTTTGAGATGTTTTGTACTTCCA 59.624 34.615 0.00 0.00 32.71 3.53
644 653 6.912591 GTGTTTGAGATGTTTTGTACTTCCAG 59.087 38.462 0.00 0.00 32.71 3.86
650 659 7.502226 TGAGATGTTTTGTACTTCCAGTGAATT 59.498 33.333 0.00 0.00 32.71 2.17
698 740 4.573900 AGAACACTGTCATTTAGGAGCAG 58.426 43.478 0.00 0.00 0.00 4.24
720 762 5.063944 CAGTTACTCCTCACGAAATGGAATG 59.936 44.000 0.00 0.00 0.00 2.67
742 1105 4.141041 TGAAACTCCCTCCTGAATTTTCCA 60.141 41.667 0.00 0.00 0.00 3.53
747 1110 6.745857 ACTCCCTCCTGAATTTTCCAAATAT 58.254 36.000 0.00 0.00 0.00 1.28
758 1121 2.999507 TCCAAATATGTGCGCGTTTT 57.000 40.000 8.43 0.00 0.00 2.43
809 1172 0.037590 ATAAACCGGCCAACTCAGCA 59.962 50.000 0.00 0.00 0.00 4.41
949 1320 4.465446 CCGCCTCCTCCTCCTCCA 62.465 72.222 0.00 0.00 0.00 3.86
950 1321 3.151022 CGCCTCCTCCTCCTCCAC 61.151 72.222 0.00 0.00 0.00 4.02
951 1322 2.766229 GCCTCCTCCTCCTCCACC 60.766 72.222 0.00 0.00 0.00 4.61
952 1323 2.780693 CCTCCTCCTCCTCCACCA 59.219 66.667 0.00 0.00 0.00 4.17
953 1324 1.687493 CCTCCTCCTCCTCCACCAC 60.687 68.421 0.00 0.00 0.00 4.16
954 1325 1.687493 CTCCTCCTCCTCCACCACC 60.687 68.421 0.00 0.00 0.00 4.61
955 1326 2.122729 CCTCCTCCTCCACCACCA 59.877 66.667 0.00 0.00 0.00 4.17
1111 1482 2.284405 GTCGGAAGGTCTCCCCCA 60.284 66.667 0.00 0.00 41.87 4.96
1112 1483 1.916777 GTCGGAAGGTCTCCCCCAA 60.917 63.158 0.00 0.00 41.87 4.12
1179 1550 2.123982 CCCCCATCAAGCTCTGCC 60.124 66.667 0.00 0.00 0.00 4.85
1220 1591 3.192922 CGCGGTTCGATTGGGGAC 61.193 66.667 0.00 0.00 41.67 4.46
1243 1614 1.000896 CGGCTCCCCTTGTTGGAAT 60.001 57.895 0.00 0.00 38.35 3.01
1279 1650 2.895865 TTTGCGACGCCGGTTTCA 60.896 55.556 18.69 0.00 36.06 2.69
1290 1661 0.739561 CCGGTTTCACACGGGAAAAA 59.260 50.000 0.00 0.00 46.81 1.94
1337 1709 5.817816 GGTGGTTTGGTGAGATGTAGATTAG 59.182 44.000 0.00 0.00 0.00 1.73
1415 1787 0.933097 CATAGTGCTTCGCAATCGCT 59.067 50.000 0.00 0.00 41.47 4.93
1428 1800 1.071385 CAATCGCTAGGGCTGAATCCT 59.929 52.381 1.02 0.00 38.36 3.24
1478 1862 4.303603 CGCGGCGATTGCATCCAG 62.304 66.667 19.16 0.00 45.35 3.86
1512 1896 3.067461 GTCCGATGTATCTGAACTCTGCT 59.933 47.826 0.00 0.00 0.00 4.24
1538 1922 3.643792 GGAGGACTGTTATGGATAGCTGT 59.356 47.826 0.00 0.00 0.00 4.40
1563 1947 5.794894 ACTTCGAGTCTGTGGATGTTAATT 58.205 37.500 0.00 0.00 0.00 1.40
1564 1948 5.869888 ACTTCGAGTCTGTGGATGTTAATTC 59.130 40.000 0.00 0.00 0.00 2.17
1565 1949 4.755411 TCGAGTCTGTGGATGTTAATTCC 58.245 43.478 1.42 1.42 0.00 3.01
1612 1999 8.635328 TGTTTACTTACTGATATCCTGCGAATA 58.365 33.333 0.00 0.00 0.00 1.75
1644 2031 7.145323 GGTAATATTTGCGGAATTGCTTGTAT 58.855 34.615 0.00 0.00 35.36 2.29
1648 2035 3.691049 TGCGGAATTGCTTGTATTAGC 57.309 42.857 0.00 0.00 41.59 3.09
1666 2053 5.503662 TTAGCATGTTAACTGATGCCATG 57.496 39.130 21.15 10.29 45.13 3.66
1675 2062 0.816421 CTGATGCCATGCCGATGTGA 60.816 55.000 0.00 0.00 0.00 3.58
1695 2082 9.740239 GATGTGATATTTCATAATGTGTGCTTT 57.260 29.630 0.00 0.00 33.56 3.51
1725 2112 7.230510 TGTTATGGATAACTGCAACTTTGAGTT 59.769 33.333 10.19 9.96 42.32 3.01
1802 2189 2.291465 CCTGCGGATGTGATTTGGTATG 59.709 50.000 0.00 0.00 0.00 2.39
1813 2200 7.156876 TGTGATTTGGTATGTTTGAGGAATC 57.843 36.000 0.00 0.00 0.00 2.52
1876 2263 6.433093 AGACAGTAATTTATGGTTGGTTCCAC 59.567 38.462 0.00 0.00 40.51 4.02
1952 2341 6.550843 CAAGTTTATGTCAAACATATGCCGA 58.449 36.000 1.58 0.00 40.41 5.54
2051 2440 8.150945 TGATTAGCTAGTTTGGATATGAAGACC 58.849 37.037 0.00 0.00 0.00 3.85
2086 2475 7.384660 GGTTGCATTGAGTTGACATTTGAAATA 59.615 33.333 0.00 0.00 0.00 1.40
2175 2564 0.818040 ACGAAAGGTGCCACCAAGAC 60.818 55.000 17.80 3.61 41.95 3.01
2185 2574 4.705023 GGTGCCACCAAGACTTATTAATGT 59.295 41.667 9.55 0.00 38.42 2.71
2264 2653 7.039784 AGGCAACATGTGTTTGATTACTGTTAT 60.040 33.333 0.00 0.00 35.83 1.89
2279 2668 9.347934 GATTACTGTTATCTGACCTGATATTCG 57.652 37.037 0.00 0.00 0.00 3.34
2597 3333 4.209307 AGCTGAGTAGAACTTTAAGGGC 57.791 45.455 0.00 0.00 0.00 5.19
2696 3780 4.356405 TGATGTGTTCTCCACTTGTGAT 57.644 40.909 1.89 0.00 44.81 3.06
2774 3860 3.257469 TCAGATAGCTTGCAGGTTCAG 57.743 47.619 0.00 0.00 0.00 3.02
2948 4037 6.121776 TGGGTAGAAATTTAAGAGCAGTCA 57.878 37.500 0.00 0.00 0.00 3.41
2952 4041 9.174166 GGGTAGAAATTTAAGAGCAGTCATAAA 57.826 33.333 0.00 0.00 32.05 1.40
3107 4272 9.337396 AGTCTGTCTCTAACTCTCTATTATGTG 57.663 37.037 0.00 0.00 0.00 3.21
3141 4306 3.980646 TGCACGTTAAATTTGCTCAGT 57.019 38.095 0.00 0.00 37.16 3.41
3177 4342 5.156355 CAATTAGACATTTGCAAGCTTCGT 58.844 37.500 0.00 0.00 0.00 3.85
3178 4343 2.977405 AGACATTTGCAAGCTTCGTC 57.023 45.000 0.00 3.69 0.00 4.20
3240 4405 7.133891 TGAAGAATTTAGCTAACAGCACTTC 57.866 36.000 5.45 15.36 45.56 3.01
3460 4625 4.340666 TGCAAAATGTTTAGCCACTCTTCA 59.659 37.500 0.00 0.00 0.00 3.02
3542 4707 6.015180 ACATTAGACCAGGTTCGTTTACACTA 60.015 38.462 0.00 0.00 0.00 2.74
3595 4760 7.393327 CAGTCAAAGTGCAGTTTACATTTTTG 58.607 34.615 18.87 5.67 0.00 2.44
3618 4783 4.844349 TCTCCTTCATGGACCTTTAAGG 57.156 45.455 9.81 9.81 40.56 2.69
3662 4828 5.964168 GCATTTCATGATGAGAAACTCGAAG 59.036 40.000 0.00 0.00 37.76 3.79
3676 4842 6.937436 AAACTCGAAGTTTGAGGTTATTGT 57.063 33.333 19.99 0.00 45.83 2.71
3700 4866 3.505680 GTCTCAGTTCTCTCTTCTCTGCA 59.494 47.826 0.00 0.00 0.00 4.41
3701 4867 3.505680 TCTCAGTTCTCTCTTCTCTGCAC 59.494 47.826 0.00 0.00 0.00 4.57
4491 5658 8.408601 CAAATCCAATAACAATACCTCCAGAAG 58.591 37.037 0.00 0.00 0.00 2.85
4501 5668 5.707066 ATACCTCCAGAAGAAGCATCTTT 57.293 39.130 5.55 0.00 45.91 2.52
4662 5829 6.295859 GCACTTCAAAGGGATAAGGGAAAATT 60.296 38.462 0.00 0.00 0.00 1.82
4685 5852 1.471684 CTGAAATGAAGCCTGTGAGCC 59.528 52.381 0.00 0.00 0.00 4.70
4789 5956 4.722361 AGAAGTCTCGTCTGAATTACCC 57.278 45.455 0.00 0.00 0.00 3.69
4874 6041 3.887716 AGAAGCATGCAGAAAAGTCACTT 59.112 39.130 21.98 0.00 0.00 3.16
4878 6045 3.562505 CATGCAGAAAAGTCACTTCAGC 58.437 45.455 0.00 0.00 36.25 4.26
4919 6086 3.185203 AGGGCCAACTTGCAGGGA 61.185 61.111 6.18 0.00 0.00 4.20
4922 6089 2.282745 GCCAACTTGCAGGGAGCT 60.283 61.111 0.00 0.00 45.94 4.09
4951 6118 3.492309 CGGCACTAGAATCTGCTTCTGAT 60.492 47.826 4.11 0.00 44.12 2.90
5055 6222 6.523510 ATTCTTCTGAAGGGAGCTGTAAGGT 61.524 44.000 16.83 0.00 41.17 3.50
5070 6237 7.568325 AGCTGTAAGGTTGTTACAGATGATGC 61.568 42.308 22.99 11.09 46.63 3.91
5137 6304 4.607293 AGTCTTGTCTGACAGCAATGTA 57.393 40.909 10.77 0.00 39.27 2.29
5154 6321 8.506437 CAGCAATGTAAAGAGAAACTGTGATAA 58.494 33.333 0.00 0.00 0.00 1.75
5160 6327 5.825593 AAGAGAAACTGTGATAACAGGGA 57.174 39.130 14.99 0.00 41.76 4.20
5166 6333 2.838202 ACTGTGATAACAGGGAATCGGT 59.162 45.455 14.99 0.00 41.76 4.69
5533 6700 3.258372 AGCGTGTATCAAGACTGGAAAGA 59.742 43.478 0.00 0.00 0.00 2.52
5590 6757 2.172505 ACAAGGACAGACCATTGTGTCA 59.827 45.455 7.83 0.00 45.82 3.58
5662 6829 5.930569 GGATCAAGTCCTAGTAAAACGTGTT 59.069 40.000 0.00 0.00 44.16 3.32
5835 7020 1.889170 GGAGCAAGAAAAGAAGGGTGG 59.111 52.381 0.00 0.00 0.00 4.61
5854 7039 3.679980 GTGGTAGTGACACACTATTGCTG 59.320 47.826 8.59 0.00 46.56 4.41
5855 7040 3.576550 TGGTAGTGACACACTATTGCTGA 59.423 43.478 8.59 0.00 46.56 4.26
5872 7057 4.814147 TGCTGAAGAAGAGTGATACACAG 58.186 43.478 4.75 0.00 36.74 3.66
5887 7072 1.375140 ACAGTGTGCAGATGGAGCG 60.375 57.895 0.00 0.00 33.85 5.03
5992 7177 6.755206 TGAAGGAAATTCGACAAGAGTCTTA 58.245 36.000 4.74 0.00 42.73 2.10
5998 7183 3.672767 TCGACAAGAGTCTTAAACCCC 57.327 47.619 4.74 0.00 42.73 4.95
6110 7295 4.932200 CCAAGATTGAGAGTGACAAGGTAC 59.068 45.833 0.00 0.00 0.00 3.34
6172 7359 7.394359 AGAAATGAAATGTACCAGCACTTACAT 59.606 33.333 0.00 0.00 40.02 2.29
6173 7360 6.683974 ATGAAATGTACCAGCACTTACATC 57.316 37.500 5.01 0.00 37.84 3.06
6190 7377 1.659098 CATCGTTTCGACTACTTGGCC 59.341 52.381 0.00 0.00 39.18 5.36
6201 7388 4.143333 CTTGGCCAGGCTGCATGC 62.143 66.667 11.82 11.82 41.94 4.06
6208 7395 1.537814 CCAGGCTGCATGCAGGAAAA 61.538 55.000 40.59 11.30 45.15 2.29
6243 7430 2.263852 CAGGAGCGCAGAAGAGCA 59.736 61.111 11.47 0.00 43.61 4.26
6406 7593 3.146847 CAACCCTTACACTTCTTGGACC 58.853 50.000 0.00 0.00 0.00 4.46
6407 7594 1.703513 ACCCTTACACTTCTTGGACCC 59.296 52.381 0.00 0.00 0.00 4.46
6408 7595 1.338769 CCCTTACACTTCTTGGACCCG 60.339 57.143 0.00 0.00 0.00 5.28
6409 7596 1.346722 CCTTACACTTCTTGGACCCGT 59.653 52.381 0.00 0.00 0.00 5.28
6557 7747 4.963318 TCATATAGAAACTCCCTGCAGG 57.037 45.455 26.87 26.87 0.00 4.85
6691 7955 7.336931 TCTTCTTAGCTTCTCTCTCTCTTTCTC 59.663 40.741 0.00 0.00 0.00 2.87
6707 7971 0.733909 TCTCATCTCGTTGCGTGCTG 60.734 55.000 0.00 0.00 0.00 4.41
6826 8096 7.472334 AGTTGGAAATTTTATCATCAGCACT 57.528 32.000 0.00 0.00 0.00 4.40
6891 8171 6.397272 TGGGTGCTGCTATTTTAATTCTTTG 58.603 36.000 0.00 0.00 0.00 2.77
7021 8466 3.034635 AGTCTGGTAGATGTGGATGGAC 58.965 50.000 0.00 0.00 0.00 4.02
7083 8528 9.585099 TTCTGCATATTATTGAATTTGTTCCAC 57.415 29.630 0.00 0.00 0.00 4.02
7088 8533 9.520204 CATATTATTGAATTTGTTCCACTCACC 57.480 33.333 0.00 0.00 0.00 4.02
7096 8541 1.278985 TGTTCCACTCACCCAGCATAG 59.721 52.381 0.00 0.00 0.00 2.23
7103 8548 1.674441 CTCACCCAGCATAGCACATTG 59.326 52.381 0.00 0.00 0.00 2.82
7114 8559 5.473162 AGCATAGCACATTGTTGAAGTGTTA 59.527 36.000 0.00 0.00 35.75 2.41
7134 8580 2.709125 TATCGGCGCTACCATGGTGC 62.709 60.000 28.17 24.57 39.03 5.01
7136 8582 3.508840 GGCGCTACCATGGTGCAC 61.509 66.667 28.17 20.28 41.36 4.57
7169 8615 3.249799 CCATTTCGTTGTGTCTAGTTGCA 59.750 43.478 0.00 0.00 0.00 4.08
7191 8637 5.353123 GCATTACTATTTTCACCCTCGTTGA 59.647 40.000 0.00 0.00 0.00 3.18
7193 8639 7.464358 CATTACTATTTTCACCCTCGTTGAAG 58.536 38.462 0.00 0.00 0.00 3.02
7225 8678 1.931172 AGAACCGCGGATTATTTCACG 59.069 47.619 35.90 0.00 0.00 4.35
7238 8691 1.464734 TTTCACGCTGTTGTTTCCCA 58.535 45.000 0.00 0.00 0.00 4.37
7241 8694 1.336440 TCACGCTGTTGTTTCCCATTG 59.664 47.619 0.00 0.00 0.00 2.82
7287 8740 4.437794 CGCATTGCTTTATTTCTGCTCTGA 60.438 41.667 7.12 0.00 0.00 3.27
7312 8765 8.822652 AAAGTTTGGTGAAAAGATGAATCATC 57.177 30.769 15.01 15.01 40.80 2.92
7313 8766 7.528996 AGTTTGGTGAAAAGATGAATCATCA 57.471 32.000 23.41 2.75 42.72 3.07
7314 8767 7.600065 AGTTTGGTGAAAAGATGAATCATCAG 58.400 34.615 23.41 0.00 42.72 2.90
7315 8768 7.449395 AGTTTGGTGAAAAGATGAATCATCAGA 59.551 33.333 23.41 1.54 42.72 3.27
7316 8769 6.748333 TGGTGAAAAGATGAATCATCAGAC 57.252 37.500 23.41 12.55 42.72 3.51
7317 8770 6.479006 TGGTGAAAAGATGAATCATCAGACT 58.521 36.000 23.41 6.45 42.72 3.24
7318 8771 7.623630 TGGTGAAAAGATGAATCATCAGACTA 58.376 34.615 23.41 8.50 42.72 2.59
7319 8772 8.270030 TGGTGAAAAGATGAATCATCAGACTAT 58.730 33.333 23.41 5.12 42.72 2.12
7320 8773 9.770097 GGTGAAAAGATGAATCATCAGACTATA 57.230 33.333 23.41 2.95 42.72 1.31
7334 8787 9.340223 TCATCAGACTATAAGTATCTAGGGAGA 57.660 37.037 0.00 0.00 35.71 3.71
7335 8788 9.967451 CATCAGACTATAAGTATCTAGGGAGAA 57.033 37.037 0.00 0.00 34.61 2.87
7336 8789 9.969001 ATCAGACTATAAGTATCTAGGGAGAAC 57.031 37.037 0.00 0.00 34.61 3.01
7337 8790 8.946248 TCAGACTATAAGTATCTAGGGAGAACA 58.054 37.037 0.00 0.00 34.61 3.18
7338 8791 9.747898 CAGACTATAAGTATCTAGGGAGAACAT 57.252 37.037 0.00 0.00 34.61 2.71
7339 8792 9.747898 AGACTATAAGTATCTAGGGAGAACATG 57.252 37.037 0.00 0.00 34.61 3.21
7340 8793 8.887264 ACTATAAGTATCTAGGGAGAACATGG 57.113 38.462 0.00 0.00 34.61 3.66
7341 8794 7.896496 ACTATAAGTATCTAGGGAGAACATGGG 59.104 40.741 0.00 0.00 34.61 4.00
7342 8795 3.243724 AGTATCTAGGGAGAACATGGGC 58.756 50.000 0.00 0.00 34.61 5.36
7343 8796 1.439543 ATCTAGGGAGAACATGGGCC 58.560 55.000 0.00 0.00 34.61 5.80
7344 8797 0.343372 TCTAGGGAGAACATGGGCCT 59.657 55.000 4.53 0.00 0.00 5.19
7345 8798 0.761802 CTAGGGAGAACATGGGCCTC 59.238 60.000 4.53 0.11 0.00 4.70
7346 8799 0.694444 TAGGGAGAACATGGGCCTCC 60.694 60.000 17.09 17.09 44.32 4.30
7347 8800 2.003548 GGGAGAACATGGGCCTCCT 61.004 63.158 21.65 0.00 44.43 3.69
7348 8801 1.529309 GGAGAACATGGGCCTCCTC 59.471 63.158 17.72 4.02 42.36 3.71
7349 8802 1.274703 GGAGAACATGGGCCTCCTCA 61.275 60.000 17.72 0.00 42.36 3.86
7350 8803 0.842635 GAGAACATGGGCCTCCTCAT 59.157 55.000 4.53 0.00 0.00 2.90
7351 8804 2.050144 GAGAACATGGGCCTCCTCATA 58.950 52.381 4.53 0.00 0.00 2.15
7352 8805 2.038295 GAGAACATGGGCCTCCTCATAG 59.962 54.545 4.53 0.00 0.00 2.23
7353 8806 0.475906 AACATGGGCCTCCTCATAGC 59.524 55.000 4.53 0.00 0.00 2.97
7354 8807 0.401105 ACATGGGCCTCCTCATAGCT 60.401 55.000 4.53 0.00 0.00 3.32
7355 8808 0.324285 CATGGGCCTCCTCATAGCTC 59.676 60.000 4.53 0.00 0.00 4.09
7356 8809 0.104777 ATGGGCCTCCTCATAGCTCA 60.105 55.000 4.53 0.00 42.18 4.26
7357 8810 0.762082 TGGGCCTCCTCATAGCTCAG 60.762 60.000 4.53 0.00 30.35 3.35
7358 8811 1.370810 GGCCTCCTCATAGCTCAGC 59.629 63.158 0.00 0.00 0.00 4.26
7359 8812 1.006337 GCCTCCTCATAGCTCAGCG 60.006 63.158 0.00 0.00 0.00 5.18
7360 8813 1.459455 GCCTCCTCATAGCTCAGCGA 61.459 60.000 0.00 0.00 0.00 4.93
7361 8814 0.313672 CCTCCTCATAGCTCAGCGAC 59.686 60.000 0.00 0.00 0.00 5.19
7362 8815 1.317613 CTCCTCATAGCTCAGCGACT 58.682 55.000 0.00 0.00 0.00 4.18
7363 8816 1.266718 CTCCTCATAGCTCAGCGACTC 59.733 57.143 0.00 0.00 0.00 3.36
7364 8817 1.133945 TCCTCATAGCTCAGCGACTCT 60.134 52.381 0.00 0.00 0.00 3.24
7365 8818 1.266718 CCTCATAGCTCAGCGACTCTC 59.733 57.143 0.00 0.00 0.00 3.20
7366 8819 0.940833 TCATAGCTCAGCGACTCTCG 59.059 55.000 0.00 0.00 43.89 4.04
7367 8820 0.040514 CATAGCTCAGCGACTCTCGG 60.041 60.000 0.00 0.00 40.84 4.63
7368 8821 1.791103 ATAGCTCAGCGACTCTCGGC 61.791 60.000 0.00 0.00 40.84 5.54
7369 8822 4.863925 GCTCAGCGACTCTCGGCC 62.864 72.222 0.00 0.00 40.84 6.13
7370 8823 4.544689 CTCAGCGACTCTCGGCCG 62.545 72.222 22.12 22.12 40.84 6.13
7372 8825 4.838486 CAGCGACTCTCGGCCGTC 62.838 72.222 27.15 14.54 40.84 4.79
7376 8829 3.210528 GACTCTCGGCCGTCGGAT 61.211 66.667 27.15 8.29 39.77 4.18
7377 8830 3.183776 GACTCTCGGCCGTCGGATC 62.184 68.421 27.15 13.72 39.77 3.36
7378 8831 4.315122 CTCTCGGCCGTCGGATCG 62.315 72.222 27.15 17.56 39.77 3.69
7379 8832 4.843719 TCTCGGCCGTCGGATCGA 62.844 66.667 27.15 20.70 39.77 3.59
7380 8833 3.661131 CTCGGCCGTCGGATCGAT 61.661 66.667 27.15 0.00 38.42 3.59
7381 8834 3.195591 CTCGGCCGTCGGATCGATT 62.196 63.158 27.15 0.00 38.42 3.34
7382 8835 2.279252 CGGCCGTCGGATCGATTT 60.279 61.111 19.50 0.00 38.42 2.17
7383 8836 2.300787 CGGCCGTCGGATCGATTTC 61.301 63.158 19.50 0.00 38.42 2.17
7384 8837 1.067582 GGCCGTCGGATCGATTTCT 59.932 57.895 17.49 0.00 38.42 2.52
7385 8838 0.529992 GGCCGTCGGATCGATTTCTT 60.530 55.000 17.49 0.00 38.42 2.52
7386 8839 0.577269 GCCGTCGGATCGATTTCTTG 59.423 55.000 17.49 0.00 38.42 3.02
7387 8840 1.801395 GCCGTCGGATCGATTTCTTGA 60.801 52.381 17.49 0.00 38.42 3.02
7388 8841 2.743938 CCGTCGGATCGATTTCTTGAT 58.256 47.619 4.91 0.00 38.42 2.57
7389 8842 2.472861 CCGTCGGATCGATTTCTTGATG 59.527 50.000 4.91 0.00 38.42 3.07
7390 8843 2.097202 CGTCGGATCGATTTCTTGATGC 60.097 50.000 0.00 0.00 38.42 3.91
7391 8844 2.567065 CGGATCGATTTCTTGATGCG 57.433 50.000 0.00 1.96 46.37 4.73
7392 8845 1.860950 CGGATCGATTTCTTGATGCGT 59.139 47.619 0.00 0.00 46.38 5.24
7393 8846 2.285220 CGGATCGATTTCTTGATGCGTT 59.715 45.455 0.00 0.00 46.38 4.84
7394 8847 3.242413 CGGATCGATTTCTTGATGCGTTT 60.242 43.478 0.00 0.00 46.38 3.60
7395 8848 4.026062 CGGATCGATTTCTTGATGCGTTTA 60.026 41.667 0.00 0.00 46.38 2.01
7396 8849 5.435557 GGATCGATTTCTTGATGCGTTTAG 58.564 41.667 0.00 0.00 0.00 1.85
7397 8850 5.006746 GGATCGATTTCTTGATGCGTTTAGT 59.993 40.000 0.00 0.00 0.00 2.24
7398 8851 6.200286 GGATCGATTTCTTGATGCGTTTAGTA 59.800 38.462 0.00 0.00 0.00 1.82
7399 8852 6.327177 TCGATTTCTTGATGCGTTTAGTAC 57.673 37.500 0.00 0.00 0.00 2.73
7400 8853 5.290158 TCGATTTCTTGATGCGTTTAGTACC 59.710 40.000 0.00 0.00 0.00 3.34
7401 8854 4.914312 TTTCTTGATGCGTTTAGTACCG 57.086 40.909 0.00 0.00 0.00 4.02
7402 8855 3.581024 TCTTGATGCGTTTAGTACCGT 57.419 42.857 0.00 0.00 0.00 4.83
7403 8856 3.504863 TCTTGATGCGTTTAGTACCGTC 58.495 45.455 0.00 0.00 0.00 4.79
7404 8857 1.898938 TGATGCGTTTAGTACCGTCG 58.101 50.000 0.00 0.00 0.00 5.12
7405 8858 1.194495 GATGCGTTTAGTACCGTCGG 58.806 55.000 10.48 10.48 0.00 4.79
7406 8859 0.810648 ATGCGTTTAGTACCGTCGGA 59.189 50.000 20.51 0.00 0.00 4.55
7407 8860 0.810648 TGCGTTTAGTACCGTCGGAT 59.189 50.000 20.51 5.95 0.00 4.18
7408 8861 1.202177 TGCGTTTAGTACCGTCGGATC 60.202 52.381 20.51 10.21 0.00 3.36
7409 8862 1.064654 GCGTTTAGTACCGTCGGATCT 59.935 52.381 20.51 16.86 0.00 2.75
7410 8863 2.852522 GCGTTTAGTACCGTCGGATCTC 60.853 54.545 20.51 5.04 0.00 2.75
7411 8864 2.598439 CGTTTAGTACCGTCGGATCTCG 60.598 54.545 20.51 11.03 40.90 4.04
7412 8865 0.940126 TTAGTACCGTCGGATCTCGC 59.060 55.000 20.51 1.06 39.05 5.03
7413 8866 0.105593 TAGTACCGTCGGATCTCGCT 59.894 55.000 20.51 8.49 39.05 4.93
7414 8867 1.159098 AGTACCGTCGGATCTCGCTC 61.159 60.000 20.51 0.00 39.05 5.03
7415 8868 1.145598 TACCGTCGGATCTCGCTCT 59.854 57.895 20.51 0.00 39.05 4.09
7416 8869 0.463295 TACCGTCGGATCTCGCTCTT 60.463 55.000 20.51 0.00 39.05 2.85
7417 8870 1.298713 CCGTCGGATCTCGCTCTTG 60.299 63.158 4.91 0.00 39.05 3.02
7418 8871 1.298713 CGTCGGATCTCGCTCTTGG 60.299 63.158 0.00 0.00 39.05 3.61
7419 8872 1.715862 CGTCGGATCTCGCTCTTGGA 61.716 60.000 0.00 0.00 39.05 3.53
7420 8873 0.456221 GTCGGATCTCGCTCTTGGAA 59.544 55.000 0.00 0.00 39.05 3.53
7421 8874 0.741326 TCGGATCTCGCTCTTGGAAG 59.259 55.000 0.00 0.00 39.05 3.46
7422 8875 0.741326 CGGATCTCGCTCTTGGAAGA 59.259 55.000 0.00 0.00 0.00 2.87
7423 8876 1.535015 CGGATCTCGCTCTTGGAAGAC 60.535 57.143 0.00 0.00 0.00 3.01
7424 8877 1.202475 GGATCTCGCTCTTGGAAGACC 60.202 57.143 0.00 0.00 0.00 3.85
7425 8878 1.754226 GATCTCGCTCTTGGAAGACCT 59.246 52.381 0.00 0.00 37.04 3.85
7426 8879 1.633774 TCTCGCTCTTGGAAGACCTT 58.366 50.000 0.00 0.00 37.04 3.50
7427 8880 1.273606 TCTCGCTCTTGGAAGACCTTG 59.726 52.381 0.00 0.00 37.04 3.61
7428 8881 0.321671 TCGCTCTTGGAAGACCTTGG 59.678 55.000 0.00 0.00 37.04 3.61
7429 8882 1.301677 CGCTCTTGGAAGACCTTGGC 61.302 60.000 0.00 0.00 37.04 4.52
7430 8883 0.962855 GCTCTTGGAAGACCTTGGCC 60.963 60.000 0.00 0.00 37.04 5.36
7431 8884 0.674895 CTCTTGGAAGACCTTGGCCG 60.675 60.000 0.00 0.00 37.04 6.13
7432 8885 1.073199 CTTGGAAGACCTTGGCCGT 59.927 57.895 0.00 0.00 37.04 5.68
7433 8886 0.537371 CTTGGAAGACCTTGGCCGTT 60.537 55.000 0.00 0.00 37.04 4.44
7434 8887 0.821711 TTGGAAGACCTTGGCCGTTG 60.822 55.000 0.00 0.00 37.04 4.10
7435 8888 1.971695 GGAAGACCTTGGCCGTTGG 60.972 63.158 0.00 2.11 0.00 3.77
7436 8889 1.072505 GAAGACCTTGGCCGTTGGA 59.927 57.895 14.31 0.00 0.00 3.53
7437 8890 0.322546 GAAGACCTTGGCCGTTGGAT 60.323 55.000 14.31 1.39 0.00 3.41
7438 8891 0.322546 AAGACCTTGGCCGTTGGATC 60.323 55.000 14.31 8.54 0.00 3.36
7439 8892 1.002624 GACCTTGGCCGTTGGATCA 60.003 57.895 14.31 0.00 0.00 2.92
7440 8893 0.608035 GACCTTGGCCGTTGGATCAA 60.608 55.000 14.31 0.00 0.00 2.57
7441 8894 0.178975 ACCTTGGCCGTTGGATCAAA 60.179 50.000 14.31 0.00 0.00 2.69
7442 8895 0.965439 CCTTGGCCGTTGGATCAAAA 59.035 50.000 0.00 0.00 0.00 2.44
7443 8896 1.342819 CCTTGGCCGTTGGATCAAAAA 59.657 47.619 0.00 0.00 0.00 1.94
7470 8923 8.943909 AGTTACTGCTACAATGAATAGTTACC 57.056 34.615 0.00 0.00 0.00 2.85
7471 8924 7.705325 AGTTACTGCTACAATGAATAGTTACCG 59.295 37.037 0.00 0.00 0.00 4.02
7472 8925 5.974108 ACTGCTACAATGAATAGTTACCGT 58.026 37.500 0.00 0.00 0.00 4.83
7473 8926 6.040878 ACTGCTACAATGAATAGTTACCGTC 58.959 40.000 0.00 0.00 0.00 4.79
7474 8927 6.127423 ACTGCTACAATGAATAGTTACCGTCT 60.127 38.462 0.00 0.00 0.00 4.18
7475 8928 6.270815 TGCTACAATGAATAGTTACCGTCTC 58.729 40.000 0.00 0.00 0.00 3.36
7476 8929 5.398711 GCTACAATGAATAGTTACCGTCTCG 59.601 44.000 0.00 0.00 0.00 4.04
7477 8930 5.320549 ACAATGAATAGTTACCGTCTCGT 57.679 39.130 0.00 0.00 0.00 4.18
7478 8931 5.717119 ACAATGAATAGTTACCGTCTCGTT 58.283 37.500 0.00 0.00 0.00 3.85
7479 8932 5.803967 ACAATGAATAGTTACCGTCTCGTTC 59.196 40.000 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.152483 AGGCAACAACCCACTGCAT 60.152 52.632 0.00 0.00 37.83 3.96
70 71 2.858344 ACGACTAAGATGCGCATAACAC 59.142 45.455 25.40 11.08 0.00 3.32
72 73 2.347661 GCACGACTAAGATGCGCATAAC 60.348 50.000 25.40 12.32 0.00 1.89
74 75 1.202359 TGCACGACTAAGATGCGCATA 60.202 47.619 25.40 7.07 42.44 3.14
75 76 0.460109 TGCACGACTAAGATGCGCAT 60.460 50.000 25.66 25.66 42.44 4.73
76 77 1.078201 CTGCACGACTAAGATGCGCA 61.078 55.000 14.96 14.96 42.44 6.09
77 78 0.802222 TCTGCACGACTAAGATGCGC 60.802 55.000 0.00 0.00 42.44 6.09
78 79 1.195347 CTCTGCACGACTAAGATGCG 58.805 55.000 0.00 0.00 42.44 4.73
251 259 1.141657 GCTCCCATGCTATCACCAAGA 59.858 52.381 0.00 0.00 0.00 3.02
257 265 0.469892 TCTCCGCTCCCATGCTATCA 60.470 55.000 0.00 0.00 0.00 2.15
261 269 1.340399 TTCATCTCCGCTCCCATGCT 61.340 55.000 0.00 0.00 0.00 3.79
290 298 3.081804 GGAGTGGTGAAAATCCGAACAT 58.918 45.455 0.00 0.00 0.00 2.71
295 303 2.472695 TGAGGAGTGGTGAAAATCCG 57.527 50.000 0.00 0.00 36.91 4.18
301 309 0.679505 CGGAGTTGAGGAGTGGTGAA 59.320 55.000 0.00 0.00 0.00 3.18
333 341 0.872021 GATAGTTCGGCACCGCTCTG 60.872 60.000 3.66 0.00 39.59 3.35
334 342 1.038130 AGATAGTTCGGCACCGCTCT 61.038 55.000 3.66 7.55 39.59 4.09
336 344 1.108776 TTAGATAGTTCGGCACCGCT 58.891 50.000 3.66 0.00 39.59 5.52
337 345 2.150397 ATTAGATAGTTCGGCACCGC 57.850 50.000 3.66 0.00 39.59 5.68
338 346 4.116961 TGAAATTAGATAGTTCGGCACCG 58.883 43.478 1.73 1.73 41.35 4.94
339 347 5.049405 CCATGAAATTAGATAGTTCGGCACC 60.049 44.000 0.00 0.00 0.00 5.01
350 359 7.703621 CGCATTTTCAACTCCATGAAATTAGAT 59.296 33.333 0.00 0.00 45.77 1.98
358 367 2.749076 CTCCGCATTTTCAACTCCATGA 59.251 45.455 0.00 0.00 0.00 3.07
361 370 2.270352 ACTCCGCATTTTCAACTCCA 57.730 45.000 0.00 0.00 0.00 3.86
381 390 1.955778 CAATTCCACTGCAACCACTCA 59.044 47.619 0.00 0.00 0.00 3.41
383 392 1.682854 CACAATTCCACTGCAACCACT 59.317 47.619 0.00 0.00 0.00 4.00
384 393 1.869342 GCACAATTCCACTGCAACCAC 60.869 52.381 0.00 0.00 0.00 4.16
385 394 0.388659 GCACAATTCCACTGCAACCA 59.611 50.000 0.00 0.00 0.00 3.67
386 395 0.664166 CGCACAATTCCACTGCAACC 60.664 55.000 0.00 0.00 0.00 3.77
387 396 0.664166 CCGCACAATTCCACTGCAAC 60.664 55.000 0.00 0.00 0.00 4.17
388 397 0.821301 TCCGCACAATTCCACTGCAA 60.821 50.000 0.00 0.00 0.00 4.08
389 398 1.228094 TCCGCACAATTCCACTGCA 60.228 52.632 0.00 0.00 0.00 4.41
390 399 1.503542 CTCCGCACAATTCCACTGC 59.496 57.895 0.00 0.00 0.00 4.40
391 400 1.503542 GCTCCGCACAATTCCACTG 59.496 57.895 0.00 0.00 0.00 3.66
396 405 2.200170 AAAGCCGCTCCGCACAATTC 62.200 55.000 0.00 0.00 0.00 2.17
400 409 2.903547 GAAAAAGCCGCTCCGCACA 61.904 57.895 0.00 0.00 0.00 4.57
408 417 1.715862 GAGATCCGGGAAAAAGCCGC 61.716 60.000 0.00 0.00 0.00 6.53
412 421 3.878778 AGATGTGAGATCCGGGAAAAAG 58.121 45.455 0.00 0.00 0.00 2.27
420 429 9.056005 TCCATTATTTTAAAGATGTGAGATCCG 57.944 33.333 0.00 0.00 0.00 4.18
441 450 8.265055 TCCTTCGTAAATCTTATCAACTCCATT 58.735 33.333 0.00 0.00 0.00 3.16
469 478 1.323271 TTTTCACTTGGCGGTGGCAA 61.323 50.000 5.65 5.65 45.54 4.52
470 479 1.323271 TTTTTCACTTGGCGGTGGCA 61.323 50.000 9.83 0.00 42.47 4.92
477 486 4.222114 CACTCGAATCTTTTTCACTTGGC 58.778 43.478 0.00 0.00 0.00 4.52
514 523 2.678336 CTCCATTACCAGAAAACCGAGC 59.322 50.000 0.00 0.00 0.00 5.03
524 533 1.883084 GTCGCCGCTCCATTACCAG 60.883 63.158 0.00 0.00 0.00 4.00
525 534 2.185867 GTCGCCGCTCCATTACCA 59.814 61.111 0.00 0.00 0.00 3.25
548 557 2.604174 AAAACGAGCCGCCGACAAG 61.604 57.895 8.04 0.00 0.00 3.16
549 558 2.589442 AAAACGAGCCGCCGACAA 60.589 55.556 8.04 0.00 0.00 3.18
555 564 4.736631 GTCGCCAAAACGAGCCGC 62.737 66.667 0.00 0.00 43.89 6.53
565 574 1.856688 CGAACATTGTCGTCGCCAA 59.143 52.632 0.00 0.00 36.26 4.52
573 582 2.093783 GGACCATCGAACGAACATTGTC 59.906 50.000 0.12 4.27 0.00 3.18
574 583 2.073816 GGACCATCGAACGAACATTGT 58.926 47.619 0.12 0.00 0.00 2.71
580 589 0.899019 TCCATGGACCATCGAACGAA 59.101 50.000 11.44 0.00 0.00 3.85
598 607 7.656707 ACACAATAAAAATTGCATCAAGGTC 57.343 32.000 0.00 0.00 35.04 3.85
603 612 8.883954 TCTCAAACACAATAAAAATTGCATCA 57.116 26.923 0.00 0.00 35.04 3.07
615 624 9.944663 GAAGTACAAAACATCTCAAACACAATA 57.055 29.630 0.00 0.00 0.00 1.90
619 628 6.791303 TGGAAGTACAAAACATCTCAAACAC 58.209 36.000 0.00 0.00 0.00 3.32
670 693 7.255277 GCTCCTAAATGACAGTGTTCTTTTTCT 60.255 37.037 0.00 0.00 0.00 2.52
680 703 5.482908 AGTAACTGCTCCTAAATGACAGTG 58.517 41.667 0.00 0.00 40.55 3.66
698 740 5.175859 TCATTCCATTTCGTGAGGAGTAAC 58.824 41.667 0.00 0.00 32.11 2.50
709 751 3.378427 GGAGGGAGTTTCATTCCATTTCG 59.622 47.826 0.00 0.00 36.40 3.46
720 762 4.407365 TGGAAAATTCAGGAGGGAGTTTC 58.593 43.478 0.00 0.00 0.00 2.78
742 1105 4.959159 CGTATGTAAAACGCGCACATATTT 59.041 37.500 17.32 8.79 37.45 1.40
747 1110 3.931105 CGTATGTAAAACGCGCACA 57.069 47.368 5.73 3.63 33.04 4.57
758 1121 4.334759 GTCAGAGGAGTACTTGCGTATGTA 59.665 45.833 0.00 0.00 0.00 2.29
769 1132 0.109226 GTGCCACGTCAGAGGAGTAC 60.109 60.000 0.00 0.00 0.00 2.73
770 1133 1.248785 GGTGCCACGTCAGAGGAGTA 61.249 60.000 0.00 0.00 0.00 2.59
809 1172 1.613630 AGGGAGCGTGAGGATTGGT 60.614 57.895 0.00 0.00 0.00 3.67
972 1343 1.340657 GCGCGATCGAAGATGCTAGG 61.341 60.000 21.57 0.00 45.12 3.02
1154 1525 1.004758 CTTGATGGGGGAGGGGAGA 59.995 63.158 0.00 0.00 0.00 3.71
1179 1550 1.298413 CATACAGACCGAGACCGCG 60.298 63.158 0.00 0.00 0.00 6.46
1290 1661 4.111967 CCCAACGGCTCCCAATTT 57.888 55.556 0.00 0.00 0.00 1.82
1337 1709 0.451783 ATGCCGAATCGAACAAAGGC 59.548 50.000 3.36 11.97 44.38 4.35
1428 1800 1.543871 GCGGACTAGGGTTTTGGTGAA 60.544 52.381 0.00 0.00 0.00 3.18
1478 1862 2.356135 ACATCGGACATGCCAAGTAAC 58.644 47.619 0.00 0.00 35.94 2.50
1538 1922 4.866508 AACATCCACAGACTCGAAGTTA 57.133 40.909 0.00 0.00 0.00 2.24
1563 1947 2.891580 ACTGCAGACTTTTCTACGAGGA 59.108 45.455 23.35 0.00 0.00 3.71
1564 1948 3.305398 ACTGCAGACTTTTCTACGAGG 57.695 47.619 23.35 0.00 0.00 4.63
1565 1949 5.403246 ACATACTGCAGACTTTTCTACGAG 58.597 41.667 23.35 0.00 0.00 4.18
1612 1999 7.171337 GCAATTCCGCAAATATTACCAAATCAT 59.829 33.333 0.00 0.00 0.00 2.45
1644 2031 5.503662 CATGGCATCAGTTAACATGCTAA 57.496 39.130 22.84 15.34 44.20 3.09
1648 2035 2.542205 CGGCATGGCATCAGTTAACATG 60.542 50.000 20.37 5.02 41.26 3.21
1666 2053 6.798476 CACACATTATGAAATATCACATCGGC 59.202 38.462 0.00 0.00 38.69 5.54
1695 2082 8.511321 CAAAGTTGCAGTTATCCATAACAGTAA 58.489 33.333 11.22 6.72 43.83 2.24
1725 2112 5.217978 ACTCTACGAATTAACACCCACAA 57.782 39.130 0.00 0.00 0.00 3.33
1787 2174 6.757897 TCCTCAAACATACCAAATCACATC 57.242 37.500 0.00 0.00 0.00 3.06
1788 2175 7.415541 CGATTCCTCAAACATACCAAATCACAT 60.416 37.037 0.00 0.00 0.00 3.21
1802 2189 5.581085 ACATACTACAAGCGATTCCTCAAAC 59.419 40.000 0.00 0.00 0.00 2.93
1876 2263 1.315690 TCGCTCTCTAACCCCATACG 58.684 55.000 0.00 0.00 0.00 3.06
1952 2341 6.506538 AGGAATAACCAACAGAGCTCATAT 57.493 37.500 17.77 0.00 42.04 1.78
2051 2440 0.964860 TCAATGCAACCCCGACATGG 60.965 55.000 0.00 0.00 37.55 3.66
2175 2564 8.462016 ACCTTTCAAGCTGCTAACATTAATAAG 58.538 33.333 0.90 0.00 0.00 1.73
2185 2574 4.714632 ACTTACACCTTTCAAGCTGCTAA 58.285 39.130 0.90 0.00 0.00 3.09
2253 2642 9.347934 CGAATATCAGGTCAGATAACAGTAATC 57.652 37.037 0.00 0.00 34.42 1.75
2342 2731 6.047511 ACAGACTTCTGAGTTATGATTGCT 57.952 37.500 13.27 0.00 46.59 3.91
2427 2816 3.307762 GCCTATCCACACCTTCTGTTTCT 60.308 47.826 0.00 0.00 0.00 2.52
2557 3293 0.609131 TAAGCCCAGGTCAGCTTTGC 60.609 55.000 6.73 0.00 46.99 3.68
2597 3333 3.543680 ACTTAATCATCCTCACGGGTG 57.456 47.619 0.00 0.00 43.16 4.61
2715 3801 9.877178 GAGATAGACTTCTTCATTTTACTGGAA 57.123 33.333 0.00 0.00 0.00 3.53
2774 3860 2.860136 GGTTTTGTTCAAGCTGAGCAAC 59.140 45.455 7.39 2.93 45.05 4.17
3114 4279 8.304202 TGAGCAAATTTAACGTGCAAATTATT 57.696 26.923 16.94 9.02 40.83 1.40
3118 4283 5.288804 ACTGAGCAAATTTAACGTGCAAAT 58.711 33.333 2.16 0.00 40.83 2.32
3141 4306 8.887717 CAAATGTCTAATTGGGTTTTGTTCAAA 58.112 29.630 0.00 0.00 0.00 2.69
3161 4326 2.880890 AGAAGACGAAGCTTGCAAATGT 59.119 40.909 2.10 0.00 0.00 2.71
3483 4648 1.139058 GGATCCACTCGTGCTATGGTT 59.861 52.381 6.95 0.00 34.89 3.67
3542 4707 5.308237 GGTGGGAATCTGGAGTATACTGAAT 59.692 44.000 10.90 0.00 0.00 2.57
3649 4815 4.402056 ACCTCAAACTTCGAGTTTCTCA 57.598 40.909 9.20 0.00 44.47 3.27
3662 4828 6.619801 ACTGAGACAACAATAACCTCAAAC 57.380 37.500 0.00 0.00 34.01 2.93
3671 4837 7.450014 AGAGAAGAGAGAACTGAGACAACAATA 59.550 37.037 0.00 0.00 0.00 1.90
3676 4842 4.022416 GCAGAGAAGAGAGAACTGAGACAA 60.022 45.833 0.00 0.00 0.00 3.18
3700 4866 6.599638 CCAATTTCCCTCTTTTCTTATCTCGT 59.400 38.462 0.00 0.00 0.00 4.18
3701 4867 6.823689 TCCAATTTCCCTCTTTTCTTATCTCG 59.176 38.462 0.00 0.00 0.00 4.04
4491 5658 6.446781 TGAAATCAGATGGAAAGATGCTTC 57.553 37.500 0.00 0.00 0.00 3.86
4501 5668 3.754850 CAGCAGTGTTGAAATCAGATGGA 59.245 43.478 0.00 0.00 0.00 3.41
4662 5829 3.415212 CTCACAGGCTTCATTTCAGGAA 58.585 45.455 0.00 0.00 0.00 3.36
4665 5832 1.471684 GGCTCACAGGCTTCATTTCAG 59.528 52.381 0.00 0.00 37.85 3.02
4685 5852 0.392706 TGTGACCCTGCAGTAGTGTG 59.607 55.000 13.81 0.00 0.00 3.82
4789 5956 3.134458 GACCAAGAACTTGTCCAGACTG 58.866 50.000 12.54 0.00 38.85 3.51
4874 6041 4.265893 TCTTGTACAACAGGTTTTGCTGA 58.734 39.130 3.59 0.00 0.00 4.26
4878 6045 4.298332 GCCATCTTGTACAACAGGTTTTG 58.702 43.478 3.59 0.00 0.00 2.44
4919 6086 1.254026 TCTAGTGCCGTTGTGTAGCT 58.746 50.000 0.00 0.00 0.00 3.32
4922 6089 3.845178 CAGATTCTAGTGCCGTTGTGTA 58.155 45.455 0.00 0.00 0.00 2.90
4951 6118 0.401356 TCACAAGAATGCTGCCCAGA 59.599 50.000 0.00 0.00 0.00 3.86
5055 6222 2.159531 GCTTGCGCATCATCTGTAACAA 60.160 45.455 12.75 0.00 35.78 2.83
5062 6229 2.478890 GCTGGCTTGCGCATCATCT 61.479 57.895 12.75 0.00 38.10 2.90
5065 6232 3.740397 GTGCTGGCTTGCGCATCA 61.740 61.111 12.75 9.73 42.40 3.07
5070 6237 4.093952 CTTCGGTGCTGGCTTGCG 62.094 66.667 0.00 0.00 35.36 4.85
5154 6321 3.412386 CTTTCTTCAACCGATTCCCTGT 58.588 45.455 0.00 0.00 0.00 4.00
5160 6327 3.989817 GCAATTGCTTTCTTCAACCGATT 59.010 39.130 23.21 0.00 38.21 3.34
5166 6333 4.039151 TGAACGCAATTGCTTTCTTCAA 57.961 36.364 35.24 21.12 45.82 2.69
5533 6700 6.900186 TCCTCTTCTCATACTCCATTTTCTCT 59.100 38.462 0.00 0.00 0.00 3.10
5590 6757 1.202417 CCATACTTCCGCTGATCACGT 60.202 52.381 13.90 0.00 0.00 4.49
5620 6787 0.461548 CCAAGCTCTCGGATGCTGTA 59.538 55.000 6.44 0.00 39.71 2.74
5662 6829 5.432680 TCTTCTCCCTTTCTAGTCGACTA 57.567 43.478 23.34 23.34 0.00 2.59
5854 7039 4.387256 GCACACTGTGTATCACTCTTCTTC 59.613 45.833 13.89 0.00 35.75 2.87
5855 7040 4.202253 TGCACACTGTGTATCACTCTTCTT 60.202 41.667 13.89 0.00 35.75 2.52
5872 7057 3.503363 GCCGCTCCATCTGCACAC 61.503 66.667 0.00 0.00 0.00 3.82
6139 7326 7.828717 TGCTGGTACATTTCATTTCTTCAGATA 59.171 33.333 0.00 0.00 38.20 1.98
6140 7327 6.660521 TGCTGGTACATTTCATTTCTTCAGAT 59.339 34.615 0.00 0.00 38.20 2.90
6141 7328 6.003326 TGCTGGTACATTTCATTTCTTCAGA 58.997 36.000 0.00 0.00 38.20 3.27
6142 7329 6.072286 AGTGCTGGTACATTTCATTTCTTCAG 60.072 38.462 0.00 0.00 38.20 3.02
6143 7330 5.769662 AGTGCTGGTACATTTCATTTCTTCA 59.230 36.000 0.00 0.00 38.20 3.02
6144 7331 6.259550 AGTGCTGGTACATTTCATTTCTTC 57.740 37.500 0.00 0.00 38.20 2.87
6145 7332 6.655078 AAGTGCTGGTACATTTCATTTCTT 57.345 33.333 0.00 0.00 38.20 2.52
6146 7333 6.714810 TGTAAGTGCTGGTACATTTCATTTCT 59.285 34.615 0.00 0.00 38.20 2.52
6149 7336 6.183360 CGATGTAAGTGCTGGTACATTTCATT 60.183 38.462 0.00 0.00 40.26 2.57
6172 7359 0.675083 TGGCCAAGTAGTCGAAACGA 59.325 50.000 0.61 0.00 0.00 3.85
6173 7360 1.068474 CTGGCCAAGTAGTCGAAACG 58.932 55.000 7.01 0.00 0.00 3.60
6190 7377 0.389426 GTTTTCCTGCATGCAGCCTG 60.389 55.000 37.11 25.33 44.83 4.85
6201 7388 3.071602 TCAGTTCTCCCTCTGTTTTCCTG 59.928 47.826 0.00 0.00 33.89 3.86
6208 7395 1.622811 CTGCTTCAGTTCTCCCTCTGT 59.377 52.381 0.00 0.00 33.89 3.41
6261 7448 1.638679 CCACTCCTCCCCATGCATCA 61.639 60.000 0.00 0.00 0.00 3.07
6338 7525 5.992217 GGATGATGGATTAGTGTAACAGGAC 59.008 44.000 0.00 0.00 41.43 3.85
6340 7527 5.308825 GGGATGATGGATTAGTGTAACAGG 58.691 45.833 0.00 0.00 41.43 4.00
6343 7530 4.652822 GGGGGATGATGGATTAGTGTAAC 58.347 47.826 0.00 0.00 0.00 2.50
6370 7557 6.879993 TGTAAGGGTTGATATGCTTTCGTTAA 59.120 34.615 0.00 0.00 0.00 2.01
6371 7558 6.314400 GTGTAAGGGTTGATATGCTTTCGTTA 59.686 38.462 0.00 0.00 0.00 3.18
6406 7593 1.210931 CATGCAGCCTGACAAACGG 59.789 57.895 0.00 0.00 0.00 4.44
6407 7594 1.210931 CCATGCAGCCTGACAAACG 59.789 57.895 0.00 0.00 0.00 3.60
6408 7595 0.524862 CTCCATGCAGCCTGACAAAC 59.475 55.000 0.00 0.00 0.00 2.93
6409 7596 0.401356 TCTCCATGCAGCCTGACAAA 59.599 50.000 0.00 0.00 0.00 2.83
6644 7839 1.068748 GCACATCACTTGGCTTGTCTG 60.069 52.381 0.00 0.00 0.00 3.51
6691 7955 2.780643 CCAGCACGCAACGAGATG 59.219 61.111 0.00 0.00 34.12 2.90
6707 7971 3.437049 GTGAGTTCAAGACATACCAAGCC 59.563 47.826 0.00 0.00 0.00 4.35
6891 8171 4.619973 TGGTTTGCATCAATCAAGACAAC 58.380 39.130 0.00 0.00 0.00 3.32
6947 8229 2.366916 ACCTCGGCATCTTATCTCCAAG 59.633 50.000 0.00 0.00 0.00 3.61
7077 8522 2.014068 GCTATGCTGGGTGAGTGGAAC 61.014 57.143 0.00 0.00 0.00 3.62
7083 8528 1.674441 CAATGTGCTATGCTGGGTGAG 59.326 52.381 0.00 0.00 0.00 3.51
7088 8533 3.192001 ACTTCAACAATGTGCTATGCTGG 59.808 43.478 0.00 0.00 0.00 4.85
7096 8541 5.965334 CCGATATAACACTTCAACAATGTGC 59.035 40.000 0.00 0.00 35.33 4.57
7103 8548 2.864343 AGCGCCGATATAACACTTCAAC 59.136 45.455 2.29 0.00 0.00 3.18
7114 8559 0.037326 CACCATGGTAGCGCCGATAT 60.037 55.000 19.28 0.00 41.21 1.63
7134 8580 2.888414 ACGAAATGGTAAAAGGGTGGTG 59.112 45.455 0.00 0.00 0.00 4.17
7135 8581 3.232720 ACGAAATGGTAAAAGGGTGGT 57.767 42.857 0.00 0.00 0.00 4.16
7136 8582 3.319689 ACAACGAAATGGTAAAAGGGTGG 59.680 43.478 0.00 0.00 0.00 4.61
7169 8615 6.093633 GCTTCAACGAGGGTGAAAATAGTAAT 59.906 38.462 0.00 0.00 0.00 1.89
7225 8678 2.531522 AAGCAATGGGAAACAACAGC 57.468 45.000 0.00 0.00 0.00 4.40
7287 8740 8.423349 TGATGATTCATCTTTTCACCAAACTTT 58.577 29.630 23.49 0.00 41.06 2.66
7312 8765 9.747898 ATGTTCTCCCTAGATACTTATAGTCTG 57.252 37.037 0.00 0.00 0.00 3.51
7313 8766 9.747898 CATGTTCTCCCTAGATACTTATAGTCT 57.252 37.037 0.00 0.00 0.00 3.24
7314 8767 8.962679 CCATGTTCTCCCTAGATACTTATAGTC 58.037 40.741 0.00 0.00 0.00 2.59
7315 8768 7.896496 CCCATGTTCTCCCTAGATACTTATAGT 59.104 40.741 0.00 0.00 0.00 2.12
7316 8769 7.147811 GCCCATGTTCTCCCTAGATACTTATAG 60.148 44.444 0.00 0.00 0.00 1.31
7317 8770 6.668283 GCCCATGTTCTCCCTAGATACTTATA 59.332 42.308 0.00 0.00 0.00 0.98
7318 8771 5.485708 GCCCATGTTCTCCCTAGATACTTAT 59.514 44.000 0.00 0.00 0.00 1.73
7319 8772 4.838986 GCCCATGTTCTCCCTAGATACTTA 59.161 45.833 0.00 0.00 0.00 2.24
7320 8773 3.648545 GCCCATGTTCTCCCTAGATACTT 59.351 47.826 0.00 0.00 0.00 2.24
7321 8774 3.243724 GCCCATGTTCTCCCTAGATACT 58.756 50.000 0.00 0.00 0.00 2.12
7322 8775 2.303311 GGCCCATGTTCTCCCTAGATAC 59.697 54.545 0.00 0.00 0.00 2.24
7323 8776 2.182312 AGGCCCATGTTCTCCCTAGATA 59.818 50.000 0.00 0.00 0.00 1.98
7324 8777 1.061033 AGGCCCATGTTCTCCCTAGAT 60.061 52.381 0.00 0.00 0.00 1.98
7325 8778 0.343372 AGGCCCATGTTCTCCCTAGA 59.657 55.000 0.00 0.00 0.00 2.43
7326 8779 0.761802 GAGGCCCATGTTCTCCCTAG 59.238 60.000 0.00 0.00 0.00 3.02
7327 8780 0.694444 GGAGGCCCATGTTCTCCCTA 60.694 60.000 0.00 0.00 40.76 3.53
7328 8781 2.003548 GGAGGCCCATGTTCTCCCT 61.004 63.158 0.00 1.92 40.76 4.20
7329 8782 1.988982 GAGGAGGCCCATGTTCTCCC 61.989 65.000 17.37 9.29 46.07 4.30
7330 8783 1.274703 TGAGGAGGCCCATGTTCTCC 61.275 60.000 14.69 14.69 45.46 3.71
7331 8784 0.842635 ATGAGGAGGCCCATGTTCTC 59.157 55.000 0.00 0.00 33.88 2.87
7332 8785 2.053244 CTATGAGGAGGCCCATGTTCT 58.947 52.381 0.00 0.00 33.88 3.01
7333 8786 1.544314 GCTATGAGGAGGCCCATGTTC 60.544 57.143 0.00 0.00 33.88 3.18
7334 8787 0.475906 GCTATGAGGAGGCCCATGTT 59.524 55.000 0.00 0.00 33.88 2.71
7335 8788 0.401105 AGCTATGAGGAGGCCCATGT 60.401 55.000 0.00 0.00 33.88 3.21
7336 8789 0.324285 GAGCTATGAGGAGGCCCATG 59.676 60.000 0.00 0.00 33.88 3.66
7337 8790 0.104777 TGAGCTATGAGGAGGCCCAT 60.105 55.000 0.00 0.00 33.88 4.00
7338 8791 0.762082 CTGAGCTATGAGGAGGCCCA 60.762 60.000 0.00 0.00 33.88 5.36
7339 8792 2.056985 CTGAGCTATGAGGAGGCCC 58.943 63.158 0.00 0.00 0.00 5.80
7340 8793 1.370810 GCTGAGCTATGAGGAGGCC 59.629 63.158 0.00 0.00 0.00 5.19
7341 8794 1.006337 CGCTGAGCTATGAGGAGGC 60.006 63.158 1.78 0.00 0.00 4.70
7342 8795 0.313672 GTCGCTGAGCTATGAGGAGG 59.686 60.000 1.78 0.00 0.00 4.30
7343 8796 1.266718 GAGTCGCTGAGCTATGAGGAG 59.733 57.143 1.78 0.00 0.00 3.69
7344 8797 1.133945 AGAGTCGCTGAGCTATGAGGA 60.134 52.381 1.78 0.00 0.00 3.71
7345 8798 1.266718 GAGAGTCGCTGAGCTATGAGG 59.733 57.143 1.78 0.00 0.00 3.86
7346 8799 1.069973 CGAGAGTCGCTGAGCTATGAG 60.070 57.143 1.78 0.00 31.14 2.90
7347 8800 0.940833 CGAGAGTCGCTGAGCTATGA 59.059 55.000 1.78 0.00 31.14 2.15
7348 8801 0.040514 CCGAGAGTCGCTGAGCTATG 60.041 60.000 1.78 0.00 38.82 2.23
7349 8802 1.791103 GCCGAGAGTCGCTGAGCTAT 61.791 60.000 1.78 0.00 38.82 2.97
7350 8803 2.473760 GCCGAGAGTCGCTGAGCTA 61.474 63.158 1.78 0.00 38.82 3.32
7351 8804 3.821055 GCCGAGAGTCGCTGAGCT 61.821 66.667 1.78 0.00 38.82 4.09
7352 8805 4.863925 GGCCGAGAGTCGCTGAGC 62.864 72.222 0.00 0.00 38.82 4.26
7353 8806 4.544689 CGGCCGAGAGTCGCTGAG 62.545 72.222 24.07 0.00 38.82 3.35
7355 8808 4.838486 GACGGCCGAGAGTCGCTG 62.838 72.222 35.90 0.00 38.82 5.18
7359 8812 3.183776 GATCCGACGGCCGAGAGTC 62.184 68.421 35.90 18.40 41.76 3.36
7360 8813 3.210528 GATCCGACGGCCGAGAGT 61.211 66.667 35.90 9.58 41.76 3.24
7361 8814 4.315122 CGATCCGACGGCCGAGAG 62.315 72.222 35.90 21.35 41.76 3.20
7362 8815 4.843719 TCGATCCGACGGCCGAGA 62.844 66.667 35.90 24.79 41.76 4.04
7363 8816 2.679132 AAATCGATCCGACGGCCGAG 62.679 60.000 35.90 24.42 39.18 4.63
7364 8817 2.672908 GAAATCGATCCGACGGCCGA 62.673 60.000 35.90 25.38 39.18 5.54
7365 8818 2.279252 AAATCGATCCGACGGCCG 60.279 61.111 26.86 26.86 39.18 6.13
7366 8819 0.529992 AAGAAATCGATCCGACGGCC 60.530 55.000 9.66 2.30 39.18 6.13
7367 8820 0.577269 CAAGAAATCGATCCGACGGC 59.423 55.000 9.66 0.00 39.18 5.68
7368 8821 2.203800 TCAAGAAATCGATCCGACGG 57.796 50.000 7.84 7.84 39.18 4.79
7369 8822 2.097202 GCATCAAGAAATCGATCCGACG 60.097 50.000 0.00 0.00 39.18 5.12
7370 8823 2.097202 CGCATCAAGAAATCGATCCGAC 60.097 50.000 0.00 0.00 39.18 4.79
7371 8824 2.127251 CGCATCAAGAAATCGATCCGA 58.873 47.619 0.00 0.00 41.13 4.55
7372 8825 1.860950 ACGCATCAAGAAATCGATCCG 59.139 47.619 0.00 0.00 0.00 4.18
7373 8826 3.951979 AACGCATCAAGAAATCGATCC 57.048 42.857 0.00 0.00 0.00 3.36
7374 8827 6.037423 ACTAAACGCATCAAGAAATCGATC 57.963 37.500 0.00 0.00 0.00 3.69
7375 8828 6.018994 GGTACTAAACGCATCAAGAAATCGAT 60.019 38.462 0.00 0.00 0.00 3.59
7376 8829 5.290158 GGTACTAAACGCATCAAGAAATCGA 59.710 40.000 0.00 0.00 0.00 3.59
7377 8830 5.490213 GGTACTAAACGCATCAAGAAATCG 58.510 41.667 0.00 0.00 0.00 3.34
7378 8831 5.063060 ACGGTACTAAACGCATCAAGAAATC 59.937 40.000 0.00 0.00 0.00 2.17
7379 8832 4.933400 ACGGTACTAAACGCATCAAGAAAT 59.067 37.500 0.00 0.00 0.00 2.17
7380 8833 4.309099 ACGGTACTAAACGCATCAAGAAA 58.691 39.130 0.00 0.00 0.00 2.52
7381 8834 3.916761 ACGGTACTAAACGCATCAAGAA 58.083 40.909 0.00 0.00 0.00 2.52
7382 8835 3.504863 GACGGTACTAAACGCATCAAGA 58.495 45.455 0.00 0.00 0.00 3.02
7383 8836 2.278094 CGACGGTACTAAACGCATCAAG 59.722 50.000 0.00 0.00 0.00 3.02
7384 8837 2.252747 CGACGGTACTAAACGCATCAA 58.747 47.619 0.00 0.00 0.00 2.57
7385 8838 1.467883 CCGACGGTACTAAACGCATCA 60.468 52.381 5.48 0.00 0.00 3.07
7386 8839 1.194495 CCGACGGTACTAAACGCATC 58.806 55.000 5.48 0.00 0.00 3.91
7387 8840 0.810648 TCCGACGGTACTAAACGCAT 59.189 50.000 14.79 0.00 0.00 4.73
7388 8841 0.810648 ATCCGACGGTACTAAACGCA 59.189 50.000 14.79 0.00 0.00 5.24
7389 8842 1.064654 AGATCCGACGGTACTAAACGC 59.935 52.381 14.79 0.00 0.00 4.84
7390 8843 2.598439 CGAGATCCGACGGTACTAAACG 60.598 54.545 14.79 10.18 41.76 3.60
7391 8844 2.852522 GCGAGATCCGACGGTACTAAAC 60.853 54.545 14.79 4.26 41.76 2.01
7392 8845 1.331756 GCGAGATCCGACGGTACTAAA 59.668 52.381 14.79 0.00 41.76 1.85
7393 8846 0.940126 GCGAGATCCGACGGTACTAA 59.060 55.000 14.79 0.00 41.76 2.24
7394 8847 0.105593 AGCGAGATCCGACGGTACTA 59.894 55.000 14.79 0.00 41.76 1.82
7395 8848 1.153208 AGCGAGATCCGACGGTACT 60.153 57.895 14.79 13.94 41.76 2.73
7396 8849 1.159098 AGAGCGAGATCCGACGGTAC 61.159 60.000 14.79 9.23 41.76 3.34
7397 8850 0.463295 AAGAGCGAGATCCGACGGTA 60.463 55.000 14.79 0.72 41.76 4.02
7398 8851 1.749638 AAGAGCGAGATCCGACGGT 60.750 57.895 14.79 8.10 41.76 4.83
7399 8852 1.298713 CAAGAGCGAGATCCGACGG 60.299 63.158 7.84 7.84 41.76 4.79
7400 8853 1.298713 CCAAGAGCGAGATCCGACG 60.299 63.158 7.64 4.34 41.76 5.12
7401 8854 0.456221 TTCCAAGAGCGAGATCCGAC 59.544 55.000 7.64 1.83 41.76 4.79
7402 8855 0.741326 CTTCCAAGAGCGAGATCCGA 59.259 55.000 7.64 0.00 41.76 4.55
7403 8856 0.741326 TCTTCCAAGAGCGAGATCCG 59.259 55.000 0.00 0.00 42.21 4.18
7404 8857 1.202475 GGTCTTCCAAGAGCGAGATCC 60.202 57.143 2.88 0.00 42.77 3.36
7405 8858 2.217429 GGTCTTCCAAGAGCGAGATC 57.783 55.000 2.88 0.00 42.77 2.75
7412 8865 0.674895 CGGCCAAGGTCTTCCAAGAG 60.675 60.000 2.24 0.00 35.32 2.85
7413 8866 1.374947 CGGCCAAGGTCTTCCAAGA 59.625 57.895 2.24 0.00 35.89 3.02
7414 8867 0.537371 AACGGCCAAGGTCTTCCAAG 60.537 55.000 2.24 0.00 35.89 3.61
7415 8868 0.821711 CAACGGCCAAGGTCTTCCAA 60.822 55.000 2.24 0.00 35.89 3.53
7416 8869 1.228124 CAACGGCCAAGGTCTTCCA 60.228 57.895 2.24 0.00 35.89 3.53
7417 8870 1.971695 CCAACGGCCAAGGTCTTCC 60.972 63.158 2.24 0.00 0.00 3.46
7418 8871 0.322546 ATCCAACGGCCAAGGTCTTC 60.323 55.000 2.24 0.00 0.00 2.87
7419 8872 0.322546 GATCCAACGGCCAAGGTCTT 60.323 55.000 2.24 0.00 0.00 3.01
7420 8873 1.299976 GATCCAACGGCCAAGGTCT 59.700 57.895 2.24 0.00 0.00 3.85
7421 8874 0.608035 TTGATCCAACGGCCAAGGTC 60.608 55.000 2.24 2.57 0.00 3.85
7422 8875 0.178975 TTTGATCCAACGGCCAAGGT 60.179 50.000 2.24 0.00 0.00 3.50
7423 8876 0.965439 TTTTGATCCAACGGCCAAGG 59.035 50.000 2.24 0.15 0.00 3.61
7424 8877 2.810439 TTTTTGATCCAACGGCCAAG 57.190 45.000 2.24 0.00 0.00 3.61
7444 8897 9.379791 GGTAACTATTCATTGTAGCAGTAACTT 57.620 33.333 0.00 0.00 0.00 2.66
7445 8898 7.705325 CGGTAACTATTCATTGTAGCAGTAACT 59.295 37.037 0.00 0.00 0.00 2.24
7446 8899 7.490402 ACGGTAACTATTCATTGTAGCAGTAAC 59.510 37.037 0.00 0.00 0.00 2.50
7447 8900 7.549839 ACGGTAACTATTCATTGTAGCAGTAA 58.450 34.615 0.00 0.00 0.00 2.24
7448 8901 7.067859 AGACGGTAACTATTCATTGTAGCAGTA 59.932 37.037 0.00 0.00 0.00 2.74
7449 8902 5.974108 ACGGTAACTATTCATTGTAGCAGT 58.026 37.500 0.00 0.00 0.00 4.40
7450 8903 6.273825 AGACGGTAACTATTCATTGTAGCAG 58.726 40.000 0.00 0.00 0.00 4.24
7451 8904 6.216801 AGACGGTAACTATTCATTGTAGCA 57.783 37.500 0.00 0.00 0.00 3.49
7452 8905 5.398711 CGAGACGGTAACTATTCATTGTAGC 59.601 44.000 0.00 0.00 0.00 3.58
7453 8906 6.493116 ACGAGACGGTAACTATTCATTGTAG 58.507 40.000 0.00 0.00 0.00 2.74
7454 8907 6.441093 ACGAGACGGTAACTATTCATTGTA 57.559 37.500 0.00 0.00 0.00 2.41
7455 8908 5.320549 ACGAGACGGTAACTATTCATTGT 57.679 39.130 0.00 0.00 0.00 2.71
7456 8909 6.257169 GAACGAGACGGTAACTATTCATTG 57.743 41.667 0.00 0.00 0.00 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.