Multiple sequence alignment - TraesCS4D01G075800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G075800 chr4D 100.000 2719 0 0 1 2719 50326181 50328899 0.000000e+00 5022.0
1 TraesCS4D01G075800 chr4D 86.385 213 16 3 2501 2702 13308739 13308529 1.270000e-53 220.0
2 TraesCS4D01G075800 chr4D 90.066 151 13 2 2110 2260 13308916 13308768 7.680000e-46 195.0
3 TraesCS4D01G075800 chr4D 96.226 106 4 0 1 106 161262345 161262240 1.000000e-39 174.0
4 TraesCS4D01G075800 chr4D 88.421 95 9 2 2361 2454 477333804 477333711 2.210000e-21 113.0
5 TraesCS4D01G075800 chr4A 89.070 1656 84 37 127 1725 546486338 546484723 0.000000e+00 1965.0
6 TraesCS4D01G075800 chr4A 84.956 113 9 6 1874 1984 546484673 546484567 1.030000e-19 108.0
7 TraesCS4D01G075800 chr4A 89.474 76 8 0 1809 1884 597739902 597739977 2.230000e-16 97.1
8 TraesCS4D01G075800 chr4B 88.916 1218 70 23 600 1792 74273916 74275093 0.000000e+00 1441.0
9 TraesCS4D01G075800 chr4B 93.725 255 10 2 323 577 74258997 74259245 7.110000e-101 377.0
10 TraesCS4D01G075800 chr4B 93.122 189 11 2 148 335 74248703 74248890 2.670000e-70 276.0
11 TraesCS4D01G075800 chr4B 100.000 29 0 0 124 152 74248668 74248696 1.000000e-03 54.7
12 TraesCS4D01G075800 chr7A 97.306 594 13 1 2109 2702 117684737 117684147 0.000000e+00 1005.0
13 TraesCS4D01G075800 chr7A 96.296 108 3 1 1 108 84822251 84822357 2.780000e-40 176.0
14 TraesCS4D01G075800 chr2D 97.005 601 12 4 2102 2702 590234308 590233714 0.000000e+00 1005.0
15 TraesCS4D01G075800 chr2B 96.174 575 17 3 2129 2702 485756466 485755896 0.000000e+00 935.0
16 TraesCS4D01G075800 chr6B 95.652 575 21 2 2129 2702 681263937 681264508 0.000000e+00 920.0
17 TraesCS4D01G075800 chr1B 88.455 615 44 11 2110 2702 108458506 108457897 0.000000e+00 717.0
18 TraesCS4D01G075800 chr3B 87.338 616 37 18 2110 2702 763801938 763802535 0.000000e+00 667.0
19 TraesCS4D01G075800 chr3B 87.338 616 37 18 2110 2702 764553148 764552551 0.000000e+00 667.0
20 TraesCS4D01G075800 chr3B 92.308 65 5 0 2258 2322 89687769 89687705 2.880000e-15 93.5
21 TraesCS4D01G075800 chr3D 88.263 213 14 1 2501 2702 261088813 261088601 7.520000e-61 244.0
22 TraesCS4D01G075800 chr3D 96.226 106 4 0 3 108 22573803 22573698 1.000000e-39 174.0
23 TraesCS4D01G075800 chr3D 95.370 108 5 0 1 108 113025537 113025430 3.600000e-39 172.0
24 TraesCS4D01G075800 chr3D 86.585 82 9 2 1791 1870 184587205 184587286 3.730000e-14 89.8
25 TraesCS4D01G075800 chrUn 86.449 214 15 7 2501 2702 131256210 131255999 3.520000e-54 222.0
26 TraesCS4D01G075800 chr6A 96.296 108 4 0 1 108 265364286 265364393 7.740000e-41 178.0
27 TraesCS4D01G075800 chr6A 88.636 88 4 4 1799 1881 588944656 588944570 4.790000e-18 102.0
28 TraesCS4D01G075800 chr3A 97.087 103 3 0 4 106 443675648 443675546 1.000000e-39 174.0
29 TraesCS4D01G075800 chr3A 88.636 88 4 2 1799 1881 113364133 113364047 4.790000e-18 102.0
30 TraesCS4D01G075800 chr3A 88.636 88 4 2 1799 1881 714035506 714035420 4.790000e-18 102.0
31 TraesCS4D01G075800 chr5D 96.190 105 4 0 4 108 57372157 57372053 3.600000e-39 172.0
32 TraesCS4D01G075800 chr5D 86.517 89 11 1 1791 1878 469554856 469554768 2.230000e-16 97.1
33 TraesCS4D01G075800 chr5D 95.000 60 3 0 1088 1147 90687353 90687294 8.010000e-16 95.3
34 TraesCS4D01G075800 chr5A 95.370 108 5 0 1 108 549204505 549204612 3.600000e-39 172.0
35 TraesCS4D01G075800 chr5A 92.308 65 5 0 2258 2322 632319349 632319285 2.880000e-15 93.5
36 TraesCS4D01G075800 chr5A 93.333 60 4 0 1088 1147 84151291 84151232 3.730000e-14 89.8
37 TraesCS4D01G075800 chr1D 96.190 105 4 0 4 108 257064976 257064872 3.600000e-39 172.0
38 TraesCS4D01G075800 chr2A 85.890 163 17 6 2108 2267 562688884 562689043 4.660000e-38 169.0
39 TraesCS4D01G075800 chr2A 90.769 65 6 0 2258 2322 762714526 762714462 1.340000e-13 87.9
40 TraesCS4D01G075800 chr6D 85.714 161 17 6 2110 2267 55685589 55685432 6.020000e-37 165.0
41 TraesCS4D01G075800 chr6D 86.022 93 5 7 1791 1878 85081868 85081779 2.880000e-15 93.5
42 TraesCS4D01G075800 chr7D 88.372 86 6 2 1799 1881 553426302 553426386 1.720000e-17 100.0
43 TraesCS4D01G075800 chr7B 87.500 88 8 3 1791 1876 517395784 517395870 6.200000e-17 99.0
44 TraesCS4D01G075800 chr5B 93.220 59 4 0 1088 1146 96019498 96019440 1.340000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G075800 chr4D 50326181 50328899 2718 False 5022.0 5022 100.000 1 2719 1 chr4D.!!$F1 2718
1 TraesCS4D01G075800 chr4A 546484567 546486338 1771 True 1036.5 1965 87.013 127 1984 2 chr4A.!!$R1 1857
2 TraesCS4D01G075800 chr4B 74273916 74275093 1177 False 1441.0 1441 88.916 600 1792 1 chr4B.!!$F2 1192
3 TraesCS4D01G075800 chr7A 117684147 117684737 590 True 1005.0 1005 97.306 2109 2702 1 chr7A.!!$R1 593
4 TraesCS4D01G075800 chr2D 590233714 590234308 594 True 1005.0 1005 97.005 2102 2702 1 chr2D.!!$R1 600
5 TraesCS4D01G075800 chr2B 485755896 485756466 570 True 935.0 935 96.174 2129 2702 1 chr2B.!!$R1 573
6 TraesCS4D01G075800 chr6B 681263937 681264508 571 False 920.0 920 95.652 2129 2702 1 chr6B.!!$F1 573
7 TraesCS4D01G075800 chr1B 108457897 108458506 609 True 717.0 717 88.455 2110 2702 1 chr1B.!!$R1 592
8 TraesCS4D01G075800 chr3B 763801938 763802535 597 False 667.0 667 87.338 2110 2702 1 chr3B.!!$F1 592
9 TraesCS4D01G075800 chr3B 764552551 764553148 597 True 667.0 667 87.338 2110 2702 1 chr3B.!!$R2 592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
343 349 0.17576 CTCCTACCCCGATGTGTGTG 59.824 60.0 0.0 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2087 2157 0.034896 GCGTGAAAAGGGGAGAGTGA 59.965 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.530426 AATCCTATAATGTGAATCAAAGGGC 57.470 36.000 0.00 0.00 0.00 5.19
33 34 6.012337 TCCTATAATGTGAATCAAAGGGCA 57.988 37.500 0.00 0.00 0.00 5.36
34 35 6.613699 TCCTATAATGTGAATCAAAGGGCAT 58.386 36.000 0.00 0.00 0.00 4.40
35 36 6.716628 TCCTATAATGTGAATCAAAGGGCATC 59.283 38.462 0.00 0.00 0.00 3.91
36 37 6.718454 CCTATAATGTGAATCAAAGGGCATCT 59.282 38.462 0.00 0.00 0.00 2.90
37 38 4.996788 AATGTGAATCAAAGGGCATCTC 57.003 40.909 0.00 0.00 0.00 2.75
38 39 2.726821 TGTGAATCAAAGGGCATCTCC 58.273 47.619 0.00 0.00 0.00 3.71
39 40 2.309755 TGTGAATCAAAGGGCATCTCCT 59.690 45.455 0.00 0.00 39.17 3.69
48 49 4.888626 AAGGGCATCTCCTTTCCTATTT 57.111 40.909 0.00 0.00 44.14 1.40
49 50 4.445557 AGGGCATCTCCTTTCCTATTTC 57.554 45.455 0.00 0.00 32.13 2.17
50 51 4.050757 AGGGCATCTCCTTTCCTATTTCT 58.949 43.478 0.00 0.00 32.13 2.52
51 52 5.227593 AGGGCATCTCCTTTCCTATTTCTA 58.772 41.667 0.00 0.00 32.13 2.10
52 53 5.072464 AGGGCATCTCCTTTCCTATTTCTAC 59.928 44.000 0.00 0.00 32.13 2.59
53 54 5.072464 GGGCATCTCCTTTCCTATTTCTACT 59.928 44.000 0.00 0.00 34.39 2.57
54 55 6.227522 GGCATCTCCTTTCCTATTTCTACTC 58.772 44.000 0.00 0.00 0.00 2.59
55 56 6.183361 GGCATCTCCTTTCCTATTTCTACTCA 60.183 42.308 0.00 0.00 0.00 3.41
56 57 7.449247 GCATCTCCTTTCCTATTTCTACTCAT 58.551 38.462 0.00 0.00 0.00 2.90
57 58 8.589338 GCATCTCCTTTCCTATTTCTACTCATA 58.411 37.037 0.00 0.00 0.00 2.15
60 61 9.937876 TCTCCTTTCCTATTTCTACTCATAAGA 57.062 33.333 0.00 0.00 0.00 2.10
76 77 8.809159 ACTCATAAGATTTGAGATACATGTCG 57.191 34.615 0.00 0.00 42.63 4.35
77 78 8.417106 ACTCATAAGATTTGAGATACATGTCGT 58.583 33.333 0.00 0.00 42.63 4.34
78 79 8.803201 TCATAAGATTTGAGATACATGTCGTC 57.197 34.615 0.00 1.91 0.00 4.20
79 80 8.633561 TCATAAGATTTGAGATACATGTCGTCT 58.366 33.333 0.00 7.56 0.00 4.18
80 81 8.910666 CATAAGATTTGAGATACATGTCGTCTC 58.089 37.037 24.06 24.06 39.02 3.36
81 82 6.456795 AGATTTGAGATACATGTCGTCTCA 57.543 37.500 27.27 27.27 44.70 3.27
82 83 7.048629 AGATTTGAGATACATGTCGTCTCAT 57.951 36.000 29.55 21.54 45.41 2.90
83 84 7.495901 AGATTTGAGATACATGTCGTCTCATT 58.504 34.615 29.55 23.32 45.41 2.57
84 85 7.984050 AGATTTGAGATACATGTCGTCTCATTT 59.016 33.333 29.55 23.09 45.41 2.32
85 86 7.525688 TTTGAGATACATGTCGTCTCATTTC 57.474 36.000 29.55 13.34 45.41 2.17
86 87 5.592054 TGAGATACATGTCGTCTCATTTCC 58.408 41.667 27.27 11.52 42.36 3.13
87 88 5.360999 TGAGATACATGTCGTCTCATTTCCT 59.639 40.000 27.27 2.75 42.36 3.36
88 89 6.546034 TGAGATACATGTCGTCTCATTTCCTA 59.454 38.462 27.27 12.35 42.36 2.94
89 90 7.231519 TGAGATACATGTCGTCTCATTTCCTAT 59.768 37.037 27.27 4.22 42.36 2.57
90 91 7.374272 AGATACATGTCGTCTCATTTCCTATG 58.626 38.462 0.00 0.00 0.00 2.23
91 92 5.598416 ACATGTCGTCTCATTTCCTATGA 57.402 39.130 0.00 0.00 0.00 2.15
92 93 5.352284 ACATGTCGTCTCATTTCCTATGAC 58.648 41.667 0.00 0.00 0.00 3.06
93 94 5.127845 ACATGTCGTCTCATTTCCTATGACT 59.872 40.000 0.00 0.00 0.00 3.41
94 95 5.661056 TGTCGTCTCATTTCCTATGACTT 57.339 39.130 0.00 0.00 0.00 3.01
95 96 6.037786 TGTCGTCTCATTTCCTATGACTTT 57.962 37.500 0.00 0.00 0.00 2.66
96 97 6.100004 TGTCGTCTCATTTCCTATGACTTTC 58.900 40.000 0.00 0.00 0.00 2.62
97 98 5.520649 GTCGTCTCATTTCCTATGACTTTCC 59.479 44.000 0.00 0.00 0.00 3.13
98 99 5.422331 TCGTCTCATTTCCTATGACTTTCCT 59.578 40.000 0.00 0.00 0.00 3.36
99 100 6.605995 TCGTCTCATTTCCTATGACTTTCCTA 59.394 38.462 0.00 0.00 0.00 2.94
100 101 7.287927 TCGTCTCATTTCCTATGACTTTCCTAT 59.712 37.037 0.00 0.00 0.00 2.57
101 102 7.928706 CGTCTCATTTCCTATGACTTTCCTATT 59.071 37.037 0.00 0.00 0.00 1.73
102 103 9.267084 GTCTCATTTCCTATGACTTTCCTATTC 57.733 37.037 0.00 0.00 0.00 1.75
103 104 8.432805 TCTCATTTCCTATGACTTTCCTATTCC 58.567 37.037 0.00 0.00 0.00 3.01
104 105 8.337118 TCATTTCCTATGACTTTCCTATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
105 106 9.447279 TCATTTCCTATGACTTTCCTATTCCTA 57.553 33.333 0.00 0.00 0.00 2.94
106 107 9.495572 CATTTCCTATGACTTTCCTATTCCTAC 57.504 37.037 0.00 0.00 0.00 3.18
107 108 6.896021 TCCTATGACTTTCCTATTCCTACG 57.104 41.667 0.00 0.00 0.00 3.51
108 109 5.773680 TCCTATGACTTTCCTATTCCTACGG 59.226 44.000 0.00 0.00 0.00 4.02
109 110 5.773680 CCTATGACTTTCCTATTCCTACGGA 59.226 44.000 0.00 0.00 0.00 4.69
110 111 6.267014 CCTATGACTTTCCTATTCCTACGGAA 59.733 42.308 0.00 0.00 46.39 4.30
111 112 5.334724 TGACTTTCCTATTCCTACGGAAC 57.665 43.478 0.00 0.00 45.07 3.62
112 113 4.161001 TGACTTTCCTATTCCTACGGAACC 59.839 45.833 0.00 0.00 45.07 3.62
113 114 4.098894 ACTTTCCTATTCCTACGGAACCA 58.901 43.478 0.00 0.00 45.07 3.67
114 115 4.533311 ACTTTCCTATTCCTACGGAACCAA 59.467 41.667 0.00 0.00 45.07 3.67
115 116 5.013391 ACTTTCCTATTCCTACGGAACCAAA 59.987 40.000 0.00 0.00 45.07 3.28
116 117 4.748277 TCCTATTCCTACGGAACCAAAG 57.252 45.455 0.00 0.00 45.07 2.77
117 118 4.355549 TCCTATTCCTACGGAACCAAAGA 58.644 43.478 0.00 0.00 45.07 2.52
118 119 4.778958 TCCTATTCCTACGGAACCAAAGAA 59.221 41.667 0.00 0.00 45.07 2.52
119 120 5.105064 TCCTATTCCTACGGAACCAAAGAAG 60.105 44.000 0.00 0.00 45.07 2.85
120 121 3.412237 TTCCTACGGAACCAAAGAAGG 57.588 47.619 0.00 0.00 36.71 3.46
121 122 1.002773 TCCTACGGAACCAAAGAAGGC 59.997 52.381 0.00 0.00 0.00 4.35
122 123 1.450025 CTACGGAACCAAAGAAGGCC 58.550 55.000 0.00 0.00 0.00 5.19
123 124 1.003233 CTACGGAACCAAAGAAGGCCT 59.997 52.381 0.00 0.00 0.00 5.19
124 125 0.250770 ACGGAACCAAAGAAGGCCTC 60.251 55.000 5.23 0.00 0.00 4.70
125 126 0.250727 CGGAACCAAAGAAGGCCTCA 60.251 55.000 5.23 0.00 0.00 3.86
190 192 3.904136 AAAGAGTGGATTGCTTTGTCG 57.096 42.857 0.00 0.00 31.21 4.35
207 209 3.496131 GGCACGCCACCACATACG 61.496 66.667 2.36 0.00 35.81 3.06
211 213 1.929230 CACGCCACCACATACGATAA 58.071 50.000 0.00 0.00 0.00 1.75
232 234 2.513157 GCATGCATGTACGCGACGA 61.513 57.895 26.79 0.00 33.35 4.20
238 240 1.331161 GCATGTACGCGACGAATCAAG 60.331 52.381 15.93 0.76 0.00 3.02
242 244 0.920664 TACGCGACGAATCAAGCATG 59.079 50.000 15.93 0.00 0.00 4.06
243 245 0.735978 ACGCGACGAATCAAGCATGA 60.736 50.000 15.93 0.00 40.57 3.07
342 348 0.976073 CCTCCTACCCCGATGTGTGT 60.976 60.000 0.00 0.00 0.00 3.72
343 349 0.175760 CTCCTACCCCGATGTGTGTG 59.824 60.000 0.00 0.00 0.00 3.82
344 350 1.449601 CCTACCCCGATGTGTGTGC 60.450 63.158 0.00 0.00 0.00 4.57
345 351 1.809619 CTACCCCGATGTGTGTGCG 60.810 63.158 0.00 0.00 0.00 5.34
346 352 3.943479 TACCCCGATGTGTGTGCGC 62.943 63.158 0.00 0.00 0.00 6.09
376 382 3.100817 CGTTGCTTGTTTTCAGTGACAG 58.899 45.455 0.00 0.00 0.00 3.51
378 384 2.722094 TGCTTGTTTTCAGTGACAGGT 58.278 42.857 0.00 0.00 0.00 4.00
379 385 3.879998 TGCTTGTTTTCAGTGACAGGTA 58.120 40.909 0.00 0.00 0.00 3.08
380 386 4.460263 TGCTTGTTTTCAGTGACAGGTAT 58.540 39.130 0.00 0.00 0.00 2.73
381 387 5.616270 TGCTTGTTTTCAGTGACAGGTATA 58.384 37.500 0.00 0.00 0.00 1.47
424 430 7.043986 GCACTTCTTACACGTATCTGTATTCTG 60.044 40.741 0.00 0.00 0.00 3.02
442 448 4.950205 TCTGAAGTCTCTTTACCGGTTT 57.050 40.909 15.04 0.00 0.00 3.27
462 468 5.126067 GTTTCAGTGGATGCATACCTACAT 58.874 41.667 6.42 0.00 0.00 2.29
485 491 7.985184 ACATTTTATCTGTATTCTGAAGGCGTA 59.015 33.333 0.00 0.00 0.00 4.42
496 502 3.057736 TCTGAAGGCGTACTGACACTTAC 60.058 47.826 0.00 0.00 0.00 2.34
526 532 2.456989 CAGGCAATGATAAAAGCAGCG 58.543 47.619 0.00 0.00 0.00 5.18
560 566 3.573967 CCATTTTGTAACCCTTGTCAGCT 59.426 43.478 0.00 0.00 0.00 4.24
565 571 1.069227 GTAACCCTTGTCAGCTTTGCG 60.069 52.381 0.00 0.00 0.00 4.85
567 573 1.166531 ACCCTTGTCAGCTTTGCGAC 61.167 55.000 0.00 0.00 34.56 5.19
578 588 1.063806 CTTTGCGACGAAGGAGAGTG 58.936 55.000 0.00 0.00 0.00 3.51
592 602 5.546621 AGGAGAGTGTTTACAACAGCTAA 57.453 39.130 0.00 0.00 43.10 3.09
593 603 5.925509 AGGAGAGTGTTTACAACAGCTAAA 58.074 37.500 0.00 0.00 43.10 1.85
594 604 5.758784 AGGAGAGTGTTTACAACAGCTAAAC 59.241 40.000 2.67 2.67 43.10 2.01
595 605 5.526111 GGAGAGTGTTTACAACAGCTAAACA 59.474 40.000 7.49 7.49 43.10 2.83
597 607 6.346096 AGAGTGTTTACAACAGCTAAACAGA 58.654 36.000 11.14 0.00 42.17 3.41
598 608 6.480320 AGAGTGTTTACAACAGCTAAACAGAG 59.520 38.462 11.14 0.00 42.17 3.35
604 628 7.801716 TTACAACAGCTAAACAGAGAATTGT 57.198 32.000 0.00 0.00 0.00 2.71
617 641 6.681777 ACAGAGAATTGTCCAATTTAACAGC 58.318 36.000 6.70 0.00 40.77 4.40
638 662 2.231745 CTGTCAGTCGCACGCATTGG 62.232 60.000 0.00 0.00 0.00 3.16
675 704 1.101049 CAAAAGCCTGTGGACACGGT 61.101 55.000 10.14 0.00 35.97 4.83
676 705 0.818040 AAAAGCCTGTGGACACGGTC 60.818 55.000 10.14 0.00 35.97 4.79
752 782 0.807667 CTCGTGCAGAGCATGTACCC 60.808 60.000 10.62 0.00 44.84 3.69
868 903 1.108727 TCCATTCCAATCCATGCCGC 61.109 55.000 0.00 0.00 0.00 6.53
870 905 1.608055 CATTCCAATCCATGCCGCTA 58.392 50.000 0.00 0.00 0.00 4.26
907 942 8.085296 TCTCGTGCCAATGTTTTGTTTATAAAT 58.915 29.630 0.31 0.00 0.00 1.40
910 945 7.412455 CGTGCCAATGTTTTGTTTATAAATCCC 60.412 37.037 0.31 0.00 0.00 3.85
911 946 6.881602 TGCCAATGTTTTGTTTATAAATCCCC 59.118 34.615 0.31 0.00 0.00 4.81
936 971 1.209747 CCCCCTACCAAGTTCTGCTAC 59.790 57.143 0.00 0.00 0.00 3.58
948 983 1.676746 TCTGCTACTAGTGCCTACCG 58.323 55.000 5.39 0.00 0.00 4.02
977 1012 0.818040 AACACACCTTTGCCGTCTCC 60.818 55.000 0.00 0.00 0.00 3.71
988 1023 1.554583 GCCGTCTCCCCTCTCCTTTT 61.555 60.000 0.00 0.00 0.00 2.27
989 1024 1.861982 CCGTCTCCCCTCTCCTTTTA 58.138 55.000 0.00 0.00 0.00 1.52
990 1025 2.399580 CCGTCTCCCCTCTCCTTTTAT 58.600 52.381 0.00 0.00 0.00 1.40
1016 1051 5.912360 TGTCTCATGCAAGCTTATAATCG 57.088 39.130 0.00 0.00 0.00 3.34
1038 1073 3.672867 GCTCAAAGACAAGACGAGAAGAG 59.327 47.826 0.00 0.00 0.00 2.85
1080 1120 1.520342 GATGGAGGAGCTCGTGCAC 60.520 63.158 29.21 19.57 42.74 4.57
1131 1171 4.661461 CTCAAGCACGAGCAGACA 57.339 55.556 7.77 0.00 45.49 3.41
1148 1192 1.208052 GACATTCAGGCAGCAGGTAGA 59.792 52.381 0.00 0.00 0.00 2.59
1150 1194 0.543749 ATTCAGGCAGCAGGTAGACC 59.456 55.000 0.00 0.00 0.00 3.85
1153 1202 0.036732 CAGGCAGCAGGTAGACCAAA 59.963 55.000 0.66 0.00 38.89 3.28
1186 1235 8.492673 TCTCTATTTCAATTGCGTATTCTTGT 57.507 30.769 0.00 0.00 0.00 3.16
1187 1236 8.604035 TCTCTATTTCAATTGCGTATTCTTGTC 58.396 33.333 0.00 0.00 0.00 3.18
1188 1237 8.492673 TCTATTTCAATTGCGTATTCTTGTCT 57.507 30.769 0.00 0.00 0.00 3.41
1189 1238 8.946085 TCTATTTCAATTGCGTATTCTTGTCTT 58.054 29.630 0.00 0.00 0.00 3.01
1190 1239 7.801547 ATTTCAATTGCGTATTCTTGTCTTG 57.198 32.000 0.00 0.00 0.00 3.02
1199 1248 5.569059 GCGTATTCTTGTCTTGGATTTGTTG 59.431 40.000 0.00 0.00 0.00 3.33
1200 1249 6.086222 CGTATTCTTGTCTTGGATTTGTTGG 58.914 40.000 0.00 0.00 0.00 3.77
1211 1260 2.030805 GGATTTGTTGGTGAGCTGACAC 60.031 50.000 5.47 0.80 39.70 3.67
1215 1267 2.475200 GTTGGTGAGCTGACACAAAC 57.525 50.000 5.47 7.81 44.01 2.93
1218 1270 0.179018 GGTGAGCTGACACAAACCCT 60.179 55.000 5.47 0.00 41.88 4.34
1250 1302 2.483714 GGCTCGAAAGGTGCATGATCTA 60.484 50.000 0.00 0.00 33.85 1.98
1398 1459 3.064178 TCGACGACGACGAGTACG 58.936 61.111 17.84 13.05 43.81 3.67
1538 1599 3.351885 AGGAGGAGGCGGGAGAGT 61.352 66.667 0.00 0.00 0.00 3.24
1601 1662 3.114616 TCGACCGACTCCGACGAC 61.115 66.667 0.00 0.00 38.53 4.34
1748 1814 2.495270 ACGACGAGACCTCTACTGTAGA 59.505 50.000 16.17 16.17 0.00 2.59
1755 1821 5.181622 CGAGACCTCTACTGTAGACTTTTGT 59.818 44.000 13.34 6.25 0.00 2.83
1759 1825 8.921205 AGACCTCTACTGTAGACTTTTGTTAAA 58.079 33.333 13.34 0.00 0.00 1.52
1767 1835 8.565416 ACTGTAGACTTTTGTTAAATTGCTACC 58.435 33.333 0.00 0.00 0.00 3.18
1785 1853 2.032376 GGTTTCCCCGCGTGGTTA 59.968 61.111 15.14 0.00 0.00 2.85
1789 1857 2.734948 TTTCCCCGCGTGGTTACTGG 62.735 60.000 15.14 7.61 0.00 4.00
1790 1858 4.011517 CCCCGCGTGGTTACTGGT 62.012 66.667 15.14 0.00 0.00 4.00
1791 1859 2.648143 CCCCGCGTGGTTACTGGTA 61.648 63.158 15.14 0.00 0.00 3.25
1792 1860 1.446618 CCCGCGTGGTTACTGGTAC 60.447 63.158 15.14 0.00 0.00 3.34
1793 1861 1.588082 CCGCGTGGTTACTGGTACT 59.412 57.895 6.91 0.00 0.00 2.73
1794 1862 0.457337 CCGCGTGGTTACTGGTACTC 60.457 60.000 6.91 0.00 0.00 2.59
1795 1863 0.457337 CGCGTGGTTACTGGTACTCC 60.457 60.000 0.00 0.00 0.00 3.85
1796 1864 0.108472 GCGTGGTTACTGGTACTCCC 60.108 60.000 0.00 0.00 0.00 4.30
1797 1865 1.553706 CGTGGTTACTGGTACTCCCT 58.446 55.000 0.00 0.00 0.00 4.20
1798 1866 1.475682 CGTGGTTACTGGTACTCCCTC 59.524 57.143 0.00 0.00 0.00 4.30
1799 1867 1.829849 GTGGTTACTGGTACTCCCTCC 59.170 57.143 0.00 0.00 0.00 4.30
1800 1868 1.720533 TGGTTACTGGTACTCCCTCCT 59.279 52.381 0.00 0.00 0.00 3.69
1801 1869 2.292061 TGGTTACTGGTACTCCCTCCTC 60.292 54.545 0.00 0.00 0.00 3.71
1802 1870 2.024177 GGTTACTGGTACTCCCTCCTCT 60.024 54.545 0.00 0.00 0.00 3.69
1803 1871 3.025262 GTTACTGGTACTCCCTCCTCTG 58.975 54.545 0.00 0.00 0.00 3.35
1804 1872 1.085715 ACTGGTACTCCCTCCTCTGT 58.914 55.000 0.00 0.00 0.00 3.41
1805 1873 1.006162 ACTGGTACTCCCTCCTCTGTC 59.994 57.143 0.00 0.00 0.00 3.51
1806 1874 0.335361 TGGTACTCCCTCCTCTGTCC 59.665 60.000 0.00 0.00 0.00 4.02
1807 1875 0.397394 GGTACTCCCTCCTCTGTCCC 60.397 65.000 0.00 0.00 0.00 4.46
1808 1876 0.335361 GTACTCCCTCCTCTGTCCCA 59.665 60.000 0.00 0.00 0.00 4.37
1809 1877 1.062810 GTACTCCCTCCTCTGTCCCAT 60.063 57.143 0.00 0.00 0.00 4.00
1810 1878 1.319947 ACTCCCTCCTCTGTCCCATA 58.680 55.000 0.00 0.00 0.00 2.74
1811 1879 1.651770 ACTCCCTCCTCTGTCCCATAA 59.348 52.381 0.00 0.00 0.00 1.90
1812 1880 2.251338 ACTCCCTCCTCTGTCCCATAAT 59.749 50.000 0.00 0.00 0.00 1.28
1813 1881 3.471306 ACTCCCTCCTCTGTCCCATAATA 59.529 47.826 0.00 0.00 0.00 0.98
1814 1882 4.093011 CTCCCTCCTCTGTCCCATAATAG 58.907 52.174 0.00 0.00 0.00 1.73
1815 1883 2.569404 CCCTCCTCTGTCCCATAATAGC 59.431 54.545 0.00 0.00 0.00 2.97
1816 1884 2.232452 CCTCCTCTGTCCCATAATAGCG 59.768 54.545 0.00 0.00 0.00 4.26
1817 1885 2.894126 CTCCTCTGTCCCATAATAGCGT 59.106 50.000 0.00 0.00 0.00 5.07
1818 1886 3.305720 TCCTCTGTCCCATAATAGCGTT 58.694 45.455 0.00 0.00 0.00 4.84
1819 1887 3.709653 TCCTCTGTCCCATAATAGCGTTT 59.290 43.478 0.00 0.00 0.00 3.60
1820 1888 4.163458 TCCTCTGTCCCATAATAGCGTTTT 59.837 41.667 0.00 0.00 0.00 2.43
1821 1889 4.881850 CCTCTGTCCCATAATAGCGTTTTT 59.118 41.667 0.00 0.00 0.00 1.94
1868 1936 8.350852 ACACTCTTATATTATAAGACGGAGGG 57.649 38.462 18.17 13.47 31.09 4.30
1869 1937 8.168725 ACACTCTTATATTATAAGACGGAGGGA 58.831 37.037 18.17 1.48 31.09 4.20
1870 1938 9.021807 CACTCTTATATTATAAGACGGAGGGAA 57.978 37.037 18.17 0.69 31.09 3.97
1871 1939 9.771140 ACTCTTATATTATAAGACGGAGGGAAT 57.229 33.333 18.17 0.94 31.09 3.01
1884 1952 8.493787 AGACGGAGGGAATAGTAAATTAGATT 57.506 34.615 0.00 0.00 0.00 2.40
1923 1993 3.361281 AGCTTGAATCTGAATCTGGCA 57.639 42.857 10.98 0.00 0.00 4.92
1927 1997 1.562942 TGAATCTGAATCTGGCAGGCT 59.437 47.619 15.73 1.30 34.20 4.58
1928 1998 2.773661 TGAATCTGAATCTGGCAGGCTA 59.226 45.455 15.73 0.00 34.20 3.93
1930 2000 1.126488 TCTGAATCTGGCAGGCTAGG 58.874 55.000 15.73 3.19 34.20 3.02
1931 2001 0.835941 CTGAATCTGGCAGGCTAGGT 59.164 55.000 15.73 0.00 0.00 3.08
1932 2002 0.543277 TGAATCTGGCAGGCTAGGTG 59.457 55.000 15.73 0.00 0.00 4.00
1933 2003 0.179034 GAATCTGGCAGGCTAGGTGG 60.179 60.000 15.73 0.00 0.00 4.61
1934 2004 0.916358 AATCTGGCAGGCTAGGTGGT 60.916 55.000 15.73 0.00 0.00 4.16
1935 2005 0.916358 ATCTGGCAGGCTAGGTGGTT 60.916 55.000 15.73 0.00 0.00 3.67
1948 2018 5.279456 GGCTAGGTGGTTTTCATCATTTGTT 60.279 40.000 0.00 0.00 0.00 2.83
1950 2020 4.959723 AGGTGGTTTTCATCATTTGTTGG 58.040 39.130 0.00 0.00 0.00 3.77
1984 2054 0.820482 AACGGAAAAACGACCAGGGG 60.820 55.000 0.00 0.00 37.61 4.79
1985 2055 1.969589 CGGAAAAACGACCAGGGGG 60.970 63.158 0.00 0.00 41.29 5.40
1995 2065 3.674278 CCAGGGGGTGATAAGGGG 58.326 66.667 0.00 0.00 0.00 4.79
1996 2066 2.084930 CCAGGGGGTGATAAGGGGG 61.085 68.421 0.00 0.00 0.00 5.40
2017 2087 3.575506 TGGCAGGCCAAAGTGATAG 57.424 52.632 11.25 0.00 44.12 2.08
2018 2088 0.680921 TGGCAGGCCAAAGTGATAGC 60.681 55.000 11.25 0.00 44.12 2.97
2019 2089 0.680921 GGCAGGCCAAAGTGATAGCA 60.681 55.000 5.01 0.00 35.81 3.49
2020 2090 1.176527 GCAGGCCAAAGTGATAGCAA 58.823 50.000 5.01 0.00 0.00 3.91
2021 2091 1.135286 GCAGGCCAAAGTGATAGCAAC 60.135 52.381 5.01 0.00 0.00 4.17
2022 2092 2.161855 CAGGCCAAAGTGATAGCAACA 58.838 47.619 5.01 0.00 0.00 3.33
2023 2093 2.557924 CAGGCCAAAGTGATAGCAACAA 59.442 45.455 5.01 0.00 0.00 2.83
2024 2094 2.821969 AGGCCAAAGTGATAGCAACAAG 59.178 45.455 5.01 0.00 0.00 3.16
2025 2095 2.599659 GCCAAAGTGATAGCAACAAGC 58.400 47.619 0.00 0.00 46.19 4.01
2040 2110 6.219302 GCAACAAGCAATGCCATAAATATC 57.781 37.500 0.00 0.00 44.79 1.63
2041 2111 5.987347 GCAACAAGCAATGCCATAAATATCT 59.013 36.000 0.00 0.00 44.79 1.98
2042 2112 6.145048 GCAACAAGCAATGCCATAAATATCTC 59.855 38.462 0.00 0.00 44.79 2.75
2043 2113 7.431249 CAACAAGCAATGCCATAAATATCTCT 58.569 34.615 0.00 0.00 0.00 3.10
2044 2114 6.978338 ACAAGCAATGCCATAAATATCTCTG 58.022 36.000 0.00 0.00 0.00 3.35
2045 2115 5.640189 AGCAATGCCATAAATATCTCTGC 57.360 39.130 0.00 0.00 0.00 4.26
2046 2116 4.461781 AGCAATGCCATAAATATCTCTGCC 59.538 41.667 0.00 0.00 0.00 4.85
2047 2117 4.673580 GCAATGCCATAAATATCTCTGCCG 60.674 45.833 0.00 0.00 0.00 5.69
2048 2118 3.057969 TGCCATAAATATCTCTGCCGG 57.942 47.619 0.00 0.00 0.00 6.13
2049 2119 1.740025 GCCATAAATATCTCTGCCGGC 59.260 52.381 22.73 22.73 0.00 6.13
2050 2120 2.616510 GCCATAAATATCTCTGCCGGCT 60.617 50.000 29.70 9.54 34.17 5.52
2051 2121 3.369471 GCCATAAATATCTCTGCCGGCTA 60.369 47.826 29.70 15.12 34.17 3.93
2052 2122 4.184629 CCATAAATATCTCTGCCGGCTAC 58.815 47.826 29.70 0.00 0.00 3.58
2053 2123 4.322725 CCATAAATATCTCTGCCGGCTACA 60.323 45.833 29.70 10.30 0.00 2.74
2054 2124 3.838244 AAATATCTCTGCCGGCTACAA 57.162 42.857 29.70 11.42 0.00 2.41
2055 2125 3.393089 AATATCTCTGCCGGCTACAAG 57.607 47.619 29.70 17.00 0.00 3.16
2056 2126 2.067365 TATCTCTGCCGGCTACAAGA 57.933 50.000 29.70 22.82 0.00 3.02
2057 2127 1.195115 ATCTCTGCCGGCTACAAGAA 58.805 50.000 29.70 12.46 0.00 2.52
2058 2128 0.532573 TCTCTGCCGGCTACAAGAAG 59.467 55.000 29.70 14.96 0.00 2.85
2059 2129 0.247736 CTCTGCCGGCTACAAGAAGT 59.752 55.000 29.70 0.00 0.00 3.01
2060 2130 0.037326 TCTGCCGGCTACAAGAAGTG 60.037 55.000 29.70 4.80 0.00 3.16
2061 2131 0.037326 CTGCCGGCTACAAGAAGTGA 60.037 55.000 29.70 0.41 0.00 3.41
2062 2132 0.394938 TGCCGGCTACAAGAAGTGAA 59.605 50.000 29.70 0.00 0.00 3.18
2063 2133 0.796927 GCCGGCTACAAGAAGTGAAC 59.203 55.000 22.15 0.00 0.00 3.18
2064 2134 1.439679 CCGGCTACAAGAAGTGAACC 58.560 55.000 0.00 0.00 0.00 3.62
2065 2135 1.439679 CGGCTACAAGAAGTGAACCC 58.560 55.000 0.00 0.00 0.00 4.11
2066 2136 1.822506 GGCTACAAGAAGTGAACCCC 58.177 55.000 0.00 0.00 0.00 4.95
2067 2137 1.613520 GGCTACAAGAAGTGAACCCCC 60.614 57.143 0.00 0.00 0.00 5.40
2068 2138 1.351350 GCTACAAGAAGTGAACCCCCT 59.649 52.381 0.00 0.00 0.00 4.79
2069 2139 2.615747 GCTACAAGAAGTGAACCCCCTC 60.616 54.545 0.00 0.00 0.00 4.30
2070 2140 1.518367 ACAAGAAGTGAACCCCCTCA 58.482 50.000 0.00 0.00 0.00 3.86
2071 2141 1.421646 ACAAGAAGTGAACCCCCTCAG 59.578 52.381 0.00 0.00 0.00 3.35
2072 2142 1.068121 AAGAAGTGAACCCCCTCAGG 58.932 55.000 0.00 0.00 0.00 3.86
2073 2143 0.104409 AGAAGTGAACCCCCTCAGGT 60.104 55.000 0.00 0.00 44.00 4.00
2079 2149 4.116977 ACCCCCTCAGGTTTTGGT 57.883 55.556 0.00 0.00 36.44 3.67
2080 2150 2.338721 ACCCCCTCAGGTTTTGGTT 58.661 52.632 0.00 0.00 36.44 3.67
2081 2151 1.536644 ACCCCCTCAGGTTTTGGTTA 58.463 50.000 0.00 0.00 36.44 2.85
2082 2152 2.078611 ACCCCCTCAGGTTTTGGTTAT 58.921 47.619 0.00 0.00 36.44 1.89
2083 2153 3.270812 ACCCCCTCAGGTTTTGGTTATA 58.729 45.455 0.00 0.00 36.44 0.98
2084 2154 3.862309 ACCCCCTCAGGTTTTGGTTATAT 59.138 43.478 0.00 0.00 36.44 0.86
2085 2155 4.296583 ACCCCCTCAGGTTTTGGTTATATT 59.703 41.667 0.00 0.00 36.44 1.28
2086 2156 4.649218 CCCCCTCAGGTTTTGGTTATATTG 59.351 45.833 0.00 0.00 0.00 1.90
2087 2157 5.269189 CCCCTCAGGTTTTGGTTATATTGT 58.731 41.667 0.00 0.00 0.00 2.71
2088 2158 5.359860 CCCCTCAGGTTTTGGTTATATTGTC 59.640 44.000 0.00 0.00 0.00 3.18
2089 2159 5.949354 CCCTCAGGTTTTGGTTATATTGTCA 59.051 40.000 0.00 0.00 0.00 3.58
2090 2160 6.127730 CCCTCAGGTTTTGGTTATATTGTCAC 60.128 42.308 0.00 0.00 0.00 3.67
2091 2161 6.659242 CCTCAGGTTTTGGTTATATTGTCACT 59.341 38.462 0.00 0.00 0.00 3.41
2092 2162 7.148239 CCTCAGGTTTTGGTTATATTGTCACTC 60.148 40.741 0.00 0.00 0.00 3.51
2093 2163 7.458397 TCAGGTTTTGGTTATATTGTCACTCT 58.542 34.615 0.00 0.00 0.00 3.24
2094 2164 7.606456 TCAGGTTTTGGTTATATTGTCACTCTC 59.394 37.037 0.00 0.00 0.00 3.20
2095 2165 6.884836 AGGTTTTGGTTATATTGTCACTCTCC 59.115 38.462 0.00 0.00 0.00 3.71
2096 2166 6.095021 GGTTTTGGTTATATTGTCACTCTCCC 59.905 42.308 0.00 0.00 0.00 4.30
2097 2167 5.367945 TTGGTTATATTGTCACTCTCCCC 57.632 43.478 0.00 0.00 0.00 4.81
2098 2168 4.631234 TGGTTATATTGTCACTCTCCCCT 58.369 43.478 0.00 0.00 0.00 4.79
2099 2169 5.036916 TGGTTATATTGTCACTCTCCCCTT 58.963 41.667 0.00 0.00 0.00 3.95
2100 2170 5.491078 TGGTTATATTGTCACTCTCCCCTTT 59.509 40.000 0.00 0.00 0.00 3.11
2101 2171 6.011981 TGGTTATATTGTCACTCTCCCCTTTT 60.012 38.462 0.00 0.00 0.00 2.27
2102 2172 6.542735 GGTTATATTGTCACTCTCCCCTTTTC 59.457 42.308 0.00 0.00 0.00 2.29
2103 2173 5.779241 ATATTGTCACTCTCCCCTTTTCA 57.221 39.130 0.00 0.00 0.00 2.69
2104 2174 2.930826 TGTCACTCTCCCCTTTTCAC 57.069 50.000 0.00 0.00 0.00 3.18
2105 2175 1.070134 TGTCACTCTCCCCTTTTCACG 59.930 52.381 0.00 0.00 0.00 4.35
2106 2176 0.034896 TCACTCTCCCCTTTTCACGC 59.965 55.000 0.00 0.00 0.00 5.34
2107 2177 0.035458 CACTCTCCCCTTTTCACGCT 59.965 55.000 0.00 0.00 0.00 5.07
2260 2331 7.341445 ACAAAAATGCAAAGGTTCAGTAGTA 57.659 32.000 0.00 0.00 0.00 1.82
2308 2379 7.430760 AAGCATAGTTCTCAGGAAGAATACT 57.569 36.000 0.00 0.00 45.57 2.12
2310 2381 7.271511 AGCATAGTTCTCAGGAAGAATACTTG 58.728 38.462 0.00 0.00 45.57 3.16
2329 2409 3.885976 TGTTGTGTGGGATAAGGGAAA 57.114 42.857 0.00 0.00 0.00 3.13
2366 2446 1.000060 GGCTGCAAATTCAAGCACTCA 60.000 47.619 0.50 0.00 36.62 3.41
2707 2811 3.742433 TGTTAGGCAAATTGTGTTGGG 57.258 42.857 0.00 0.00 0.00 4.12
2708 2812 2.366916 TGTTAGGCAAATTGTGTTGGGG 59.633 45.455 0.00 0.00 0.00 4.96
2709 2813 2.630580 GTTAGGCAAATTGTGTTGGGGA 59.369 45.455 0.00 0.00 0.00 4.81
2710 2814 1.799933 AGGCAAATTGTGTTGGGGAA 58.200 45.000 0.00 0.00 0.00 3.97
2711 2815 1.416030 AGGCAAATTGTGTTGGGGAAC 59.584 47.619 0.00 0.00 0.00 3.62
2712 2816 1.496934 GCAAATTGTGTTGGGGAACG 58.503 50.000 0.00 0.00 0.00 3.95
2713 2817 1.202475 GCAAATTGTGTTGGGGAACGT 60.202 47.619 0.00 0.00 0.00 3.99
2714 2818 2.034812 GCAAATTGTGTTGGGGAACGTA 59.965 45.455 0.00 0.00 0.00 3.57
2715 2819 3.855524 GCAAATTGTGTTGGGGAACGTAG 60.856 47.826 0.00 0.00 0.00 3.51
2716 2820 1.530323 ATTGTGTTGGGGAACGTAGC 58.470 50.000 0.00 0.00 0.00 3.58
2717 2821 0.180642 TTGTGTTGGGGAACGTAGCA 59.819 50.000 0.00 0.00 0.00 3.49
2718 2822 0.250124 TGTGTTGGGGAACGTAGCAG 60.250 55.000 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 8.424133 GCCCTTTGATTCACATTATAGGATTTT 58.576 33.333 0.00 0.00 0.00 1.82
7 8 7.564660 TGCCCTTTGATTCACATTATAGGATTT 59.435 33.333 0.00 0.00 0.00 2.17
8 9 7.068702 TGCCCTTTGATTCACATTATAGGATT 58.931 34.615 0.00 0.00 0.00 3.01
9 10 6.613699 TGCCCTTTGATTCACATTATAGGAT 58.386 36.000 0.00 0.00 0.00 3.24
10 11 6.012337 TGCCCTTTGATTCACATTATAGGA 57.988 37.500 0.00 0.00 0.00 2.94
11 12 6.718454 AGATGCCCTTTGATTCACATTATAGG 59.282 38.462 0.00 0.00 0.00 2.57
12 13 7.094463 GGAGATGCCCTTTGATTCACATTATAG 60.094 40.741 0.00 0.00 0.00 1.31
13 14 6.716628 GGAGATGCCCTTTGATTCACATTATA 59.283 38.462 0.00 0.00 0.00 0.98
14 15 5.537674 GGAGATGCCCTTTGATTCACATTAT 59.462 40.000 0.00 0.00 0.00 1.28
15 16 4.889409 GGAGATGCCCTTTGATTCACATTA 59.111 41.667 0.00 0.00 0.00 1.90
16 17 3.703052 GGAGATGCCCTTTGATTCACATT 59.297 43.478 0.00 0.00 0.00 2.71
17 18 3.053095 AGGAGATGCCCTTTGATTCACAT 60.053 43.478 0.00 0.00 37.37 3.21
18 19 2.309755 AGGAGATGCCCTTTGATTCACA 59.690 45.455 0.00 0.00 37.37 3.58
19 20 3.010200 AGGAGATGCCCTTTGATTCAC 57.990 47.619 0.00 0.00 37.37 3.18
20 21 3.744940 AAGGAGATGCCCTTTGATTCA 57.255 42.857 0.00 0.00 43.68 2.57
28 29 4.050757 AGAAATAGGAAAGGAGATGCCCT 58.949 43.478 0.00 0.00 38.42 5.19
29 30 4.445557 AGAAATAGGAAAGGAGATGCCC 57.554 45.455 0.00 0.00 37.37 5.36
30 31 6.181206 AGTAGAAATAGGAAAGGAGATGCC 57.819 41.667 0.00 0.00 0.00 4.40
31 32 6.821388 TGAGTAGAAATAGGAAAGGAGATGC 58.179 40.000 0.00 0.00 0.00 3.91
34 35 9.937876 TCTTATGAGTAGAAATAGGAAAGGAGA 57.062 33.333 0.00 0.00 0.00 3.71
50 51 9.899226 CGACATGTATCTCAAATCTTATGAGTA 57.101 33.333 0.00 0.00 43.77 2.59
51 52 8.417106 ACGACATGTATCTCAAATCTTATGAGT 58.583 33.333 0.00 0.00 43.77 3.41
52 53 8.809159 ACGACATGTATCTCAAATCTTATGAG 57.191 34.615 0.00 0.00 44.53 2.90
53 54 8.633561 AGACGACATGTATCTCAAATCTTATGA 58.366 33.333 0.00 0.00 0.00 2.15
54 55 8.809159 AGACGACATGTATCTCAAATCTTATG 57.191 34.615 0.00 0.00 0.00 1.90
55 56 8.633561 TGAGACGACATGTATCTCAAATCTTAT 58.366 33.333 27.99 1.59 44.49 1.73
56 57 7.996385 TGAGACGACATGTATCTCAAATCTTA 58.004 34.615 27.99 12.05 44.49 2.10
57 58 6.867550 TGAGACGACATGTATCTCAAATCTT 58.132 36.000 27.99 2.75 44.49 2.40
58 59 6.456795 TGAGACGACATGTATCTCAAATCT 57.543 37.500 27.99 11.58 44.49 2.40
64 65 5.837437 AGGAAATGAGACGACATGTATCTC 58.163 41.667 23.73 23.73 39.58 2.75
65 66 5.860941 AGGAAATGAGACGACATGTATCT 57.139 39.130 11.07 11.07 39.58 1.98
66 67 7.327275 GTCATAGGAAATGAGACGACATGTATC 59.673 40.741 0.00 0.00 39.31 2.24
67 68 7.014711 AGTCATAGGAAATGAGACGACATGTAT 59.985 37.037 0.00 0.00 34.56 2.29
68 69 6.321435 AGTCATAGGAAATGAGACGACATGTA 59.679 38.462 0.00 0.00 34.56 2.29
69 70 5.127845 AGTCATAGGAAATGAGACGACATGT 59.872 40.000 0.00 0.00 34.56 3.21
70 71 5.595885 AGTCATAGGAAATGAGACGACATG 58.404 41.667 0.00 0.00 34.56 3.21
71 72 5.860941 AGTCATAGGAAATGAGACGACAT 57.139 39.130 0.00 0.00 34.56 3.06
72 73 5.661056 AAGTCATAGGAAATGAGACGACA 57.339 39.130 0.00 0.00 34.56 4.35
73 74 5.520649 GGAAAGTCATAGGAAATGAGACGAC 59.479 44.000 0.00 0.00 34.56 4.34
74 75 5.422331 AGGAAAGTCATAGGAAATGAGACGA 59.578 40.000 0.00 0.00 34.56 4.20
75 76 5.665459 AGGAAAGTCATAGGAAATGAGACG 58.335 41.667 0.00 0.00 34.56 4.18
76 77 9.267084 GAATAGGAAAGTCATAGGAAATGAGAC 57.733 37.037 0.00 0.00 0.00 3.36
77 78 8.432805 GGAATAGGAAAGTCATAGGAAATGAGA 58.567 37.037 0.00 0.00 0.00 3.27
78 79 8.435982 AGGAATAGGAAAGTCATAGGAAATGAG 58.564 37.037 0.00 0.00 0.00 2.90
79 80 8.337118 AGGAATAGGAAAGTCATAGGAAATGA 57.663 34.615 0.00 0.00 0.00 2.57
80 81 9.495572 GTAGGAATAGGAAAGTCATAGGAAATG 57.504 37.037 0.00 0.00 0.00 2.32
81 82 8.368668 CGTAGGAATAGGAAAGTCATAGGAAAT 58.631 37.037 0.00 0.00 0.00 2.17
82 83 7.723324 CGTAGGAATAGGAAAGTCATAGGAAA 58.277 38.462 0.00 0.00 0.00 3.13
83 84 7.286215 CGTAGGAATAGGAAAGTCATAGGAA 57.714 40.000 0.00 0.00 0.00 3.36
84 85 6.896021 CGTAGGAATAGGAAAGTCATAGGA 57.104 41.667 0.00 0.00 0.00 2.94
103 104 1.003233 AGGCCTTCTTTGGTTCCGTAG 59.997 52.381 0.00 0.00 0.00 3.51
104 105 1.002773 GAGGCCTTCTTTGGTTCCGTA 59.997 52.381 6.77 0.00 0.00 4.02
105 106 0.250770 GAGGCCTTCTTTGGTTCCGT 60.251 55.000 6.77 0.00 0.00 4.69
106 107 0.250727 TGAGGCCTTCTTTGGTTCCG 60.251 55.000 6.77 0.00 0.00 4.30
107 108 1.202940 ACTGAGGCCTTCTTTGGTTCC 60.203 52.381 6.77 0.00 0.00 3.62
108 109 2.278332 ACTGAGGCCTTCTTTGGTTC 57.722 50.000 6.77 0.00 0.00 3.62
109 110 2.695147 CAAACTGAGGCCTTCTTTGGTT 59.305 45.455 6.77 3.49 0.00 3.67
110 111 2.310538 CAAACTGAGGCCTTCTTTGGT 58.689 47.619 6.77 0.00 0.00 3.67
111 112 2.310538 ACAAACTGAGGCCTTCTTTGG 58.689 47.619 23.95 12.40 29.67 3.28
112 113 4.114794 CAAACAAACTGAGGCCTTCTTTG 58.885 43.478 20.88 20.88 31.01 2.77
113 114 3.769300 ACAAACAAACTGAGGCCTTCTTT 59.231 39.130 6.77 1.69 0.00 2.52
114 115 3.365472 ACAAACAAACTGAGGCCTTCTT 58.635 40.909 6.77 0.00 0.00 2.52
115 116 3.018423 ACAAACAAACTGAGGCCTTCT 57.982 42.857 6.77 0.00 0.00 2.85
116 117 3.801114 AACAAACAAACTGAGGCCTTC 57.199 42.857 6.77 0.10 0.00 3.46
117 118 4.222810 AGAAAACAAACAAACTGAGGCCTT 59.777 37.500 6.77 0.00 0.00 4.35
118 119 3.769300 AGAAAACAAACAAACTGAGGCCT 59.231 39.130 3.86 3.86 0.00 5.19
119 120 4.112634 GAGAAAACAAACAAACTGAGGCC 58.887 43.478 0.00 0.00 0.00 5.19
120 121 4.998788 AGAGAAAACAAACAAACTGAGGC 58.001 39.130 0.00 0.00 0.00 4.70
121 122 6.030228 GTGAGAGAAAACAAACAAACTGAGG 58.970 40.000 0.00 0.00 0.00 3.86
122 123 6.846350 AGTGAGAGAAAACAAACAAACTGAG 58.154 36.000 0.00 0.00 0.00 3.35
123 124 6.817765 AGTGAGAGAAAACAAACAAACTGA 57.182 33.333 0.00 0.00 0.00 3.41
124 125 7.873739 AAAGTGAGAGAAAACAAACAAACTG 57.126 32.000 0.00 0.00 0.00 3.16
125 126 7.095649 GCAAAAGTGAGAGAAAACAAACAAACT 60.096 33.333 0.00 0.00 0.00 2.66
190 192 3.496131 CGTATGTGGTGGCGTGCC 61.496 66.667 3.30 3.30 0.00 5.01
195 197 2.616376 TGCATTTATCGTATGTGGTGGC 59.384 45.455 0.00 0.00 0.00 5.01
205 207 3.606846 GCGTACATGCATGCATTTATCGT 60.607 43.478 30.32 24.53 33.90 3.73
206 208 2.904319 GCGTACATGCATGCATTTATCG 59.096 45.455 30.32 27.87 33.90 2.92
207 209 2.904319 CGCGTACATGCATGCATTTATC 59.096 45.455 30.32 20.34 33.90 1.75
211 213 0.027979 GTCGCGTACATGCATGCATT 59.972 50.000 30.32 21.91 33.90 3.56
242 244 2.730090 CGAAAGCTGGACACATGCATTC 60.730 50.000 0.00 0.00 33.03 2.67
243 245 1.200716 CGAAAGCTGGACACATGCATT 59.799 47.619 0.00 0.00 0.00 3.56
247 249 2.157668 GTGTACGAAAGCTGGACACATG 59.842 50.000 12.06 0.00 40.10 3.21
250 252 1.145803 GGTGTACGAAAGCTGGACAC 58.854 55.000 9.10 9.10 39.72 3.67
251 253 3.599412 GGTGTACGAAAGCTGGACA 57.401 52.632 0.00 0.00 0.00 4.02
319 325 0.397254 ACATCGGGGTAGGAGGAGTG 60.397 60.000 0.00 0.00 0.00 3.51
349 355 0.318699 GAAAACAAGCAACGGAGCCC 60.319 55.000 0.00 0.00 34.23 5.19
350 356 0.383949 TGAAAACAAGCAACGGAGCC 59.616 50.000 0.00 0.00 34.23 4.70
351 357 1.065551 ACTGAAAACAAGCAACGGAGC 59.934 47.619 0.00 0.00 0.00 4.70
352 358 2.354510 TCACTGAAAACAAGCAACGGAG 59.645 45.455 0.00 0.00 0.00 4.63
356 362 3.119495 ACCTGTCACTGAAAACAAGCAAC 60.119 43.478 0.00 0.00 0.00 4.17
376 382 6.912591 GTGCATGCATTTTGAAGTACTATACC 59.087 38.462 25.64 0.00 0.00 2.73
378 384 7.864108 AGTGCATGCATTTTGAAGTACTATA 57.136 32.000 25.64 0.00 0.00 1.31
379 385 6.764308 AGTGCATGCATTTTGAAGTACTAT 57.236 33.333 25.64 0.00 0.00 2.12
380 386 6.430925 AGAAGTGCATGCATTTTGAAGTACTA 59.569 34.615 26.65 0.00 0.00 1.82
381 387 5.242393 AGAAGTGCATGCATTTTGAAGTACT 59.758 36.000 26.65 15.47 0.00 2.73
424 430 4.448060 CACTGAAACCGGTAAAGAGACTTC 59.552 45.833 8.00 5.92 0.00 3.01
442 448 5.372343 AAATGTAGGTATGCATCCACTGA 57.628 39.130 0.19 0.00 29.49 3.41
462 468 7.491372 CAGTACGCCTTCAGAATACAGATAAAA 59.509 37.037 0.00 0.00 0.00 1.52
485 491 1.553706 CCCCTACCGTAAGTGTCAGT 58.446 55.000 0.00 0.00 0.00 3.41
496 502 3.809013 ATTGCCTGGCCCCTACCG 61.809 66.667 17.53 0.00 0.00 4.02
526 532 2.676076 ACAAAATGGTCGCATGCTTTC 58.324 42.857 17.13 5.64 0.00 2.62
534 540 2.295070 ACAAGGGTTACAAAATGGTCGC 59.705 45.455 0.00 0.00 0.00 5.19
560 566 0.387929 ACACTCTCCTTCGTCGCAAA 59.612 50.000 0.00 0.00 0.00 3.68
592 602 7.147976 GCTGTTAAATTGGACAATTCTCTGTT 58.852 34.615 10.40 0.00 39.88 3.16
593 603 6.265196 TGCTGTTAAATTGGACAATTCTCTGT 59.735 34.615 10.40 0.00 39.88 3.41
594 604 6.583806 GTGCTGTTAAATTGGACAATTCTCTG 59.416 38.462 10.40 8.94 39.88 3.35
595 605 6.491403 AGTGCTGTTAAATTGGACAATTCTCT 59.509 34.615 10.40 0.00 39.88 3.10
597 607 6.040842 ACAGTGCTGTTAAATTGGACAATTCT 59.959 34.615 10.40 4.77 41.83 2.40
598 608 6.215845 ACAGTGCTGTTAAATTGGACAATTC 58.784 36.000 10.40 0.40 41.83 2.17
604 628 4.460263 ACTGACAGTGCTGTTAAATTGGA 58.540 39.130 7.47 0.00 45.05 3.53
617 641 1.560004 AATGCGTGCGACTGACAGTG 61.560 55.000 14.14 6.75 0.00 3.66
638 662 2.698855 TGAGCATTTCTCTACTGGGC 57.301 50.000 0.00 0.00 42.38 5.36
641 665 4.699257 AGGCTTTTGAGCATTTCTCTACTG 59.301 41.667 0.47 0.00 42.38 2.74
642 666 4.699257 CAGGCTTTTGAGCATTTCTCTACT 59.301 41.667 0.47 0.00 42.38 2.57
644 668 4.456911 CACAGGCTTTTGAGCATTTCTCTA 59.543 41.667 0.47 0.00 42.38 2.43
675 704 8.661752 AGCCTACCTAGTTTTAGTCTTTTAGA 57.338 34.615 0.00 0.00 0.00 2.10
676 705 7.980662 GGAGCCTACCTAGTTTTAGTCTTTTAG 59.019 40.741 0.00 0.00 0.00 1.85
868 903 1.263776 CACGAGAGAGCGCAAAGTAG 58.736 55.000 11.47 0.00 33.86 2.57
870 905 2.024319 GCACGAGAGAGCGCAAAGT 61.024 57.895 11.47 0.00 38.08 2.66
931 966 0.256752 TCCGGTAGGCACTAGTAGCA 59.743 55.000 15.90 0.00 44.14 3.49
932 967 1.337387 CTTCCGGTAGGCACTAGTAGC 59.663 57.143 0.00 1.67 44.14 3.58
936 971 0.745468 GGACTTCCGGTAGGCACTAG 59.255 60.000 16.65 0.00 44.14 2.57
948 983 2.052782 AAGGTGTGTTGTGGACTTCC 57.947 50.000 0.00 0.00 0.00 3.46
977 1012 7.040823 GCATGAGACAAATATAAAAGGAGAGGG 60.041 40.741 0.00 0.00 0.00 4.30
990 1025 8.498358 CGATTATAAGCTTGCATGAGACAAATA 58.502 33.333 9.86 0.00 0.00 1.40
1016 1051 3.643763 TCTTCTCGTCTTGTCTTTGAGC 58.356 45.455 0.00 0.00 0.00 4.26
1038 1073 3.303001 GCGTCATATGCTTCTCTTCTTGC 60.303 47.826 0.00 0.00 0.00 4.01
1080 1120 1.448540 GACCTCCATGTCGCACTGG 60.449 63.158 0.00 0.00 0.00 4.00
1131 1171 0.543749 GGTCTACCTGCTGCCTGAAT 59.456 55.000 0.00 0.00 0.00 2.57
1148 1192 8.599624 ATTGAAATAGAGATGGATGTTTTGGT 57.400 30.769 0.00 0.00 0.00 3.67
1150 1194 8.814235 GCAATTGAAATAGAGATGGATGTTTTG 58.186 33.333 10.34 0.00 0.00 2.44
1153 1202 6.319658 ACGCAATTGAAATAGAGATGGATGTT 59.680 34.615 10.34 0.00 0.00 2.71
1186 1235 2.886523 CAGCTCACCAACAAATCCAAGA 59.113 45.455 0.00 0.00 0.00 3.02
1187 1236 2.886523 TCAGCTCACCAACAAATCCAAG 59.113 45.455 0.00 0.00 0.00 3.61
1188 1237 2.622942 GTCAGCTCACCAACAAATCCAA 59.377 45.455 0.00 0.00 0.00 3.53
1189 1238 2.229792 GTCAGCTCACCAACAAATCCA 58.770 47.619 0.00 0.00 0.00 3.41
1190 1239 2.030805 GTGTCAGCTCACCAACAAATCC 60.031 50.000 0.00 0.00 32.81 3.01
1199 1248 0.179018 AGGGTTTGTGTCAGCTCACC 60.179 55.000 3.31 0.00 37.51 4.02
1200 1249 1.334869 CAAGGGTTTGTGTCAGCTCAC 59.665 52.381 0.00 0.00 38.63 3.51
1211 1260 0.457035 CCGATCATGGCAAGGGTTTG 59.543 55.000 0.00 0.00 37.36 2.93
1444 1505 3.134792 GCTCGTCCTCGCTCTCCA 61.135 66.667 0.00 0.00 36.96 3.86
1448 1509 3.119709 CTCCAGCTCGTCCTCGCTC 62.120 68.421 0.00 0.00 33.45 5.03
1748 1814 5.777850 ACCGGTAGCAATTTAACAAAAGT 57.222 34.783 4.49 0.00 0.00 2.66
1778 1846 1.475682 GAGGGAGTACCAGTAACCACG 59.524 57.143 0.00 0.00 43.89 4.94
1785 1853 1.006162 GACAGAGGAGGGAGTACCAGT 59.994 57.143 0.00 0.00 43.89 4.00
1789 1857 0.335361 TGGGACAGAGGAGGGAGTAC 59.665 60.000 0.00 0.00 0.00 2.73
1790 1858 2.815019 TGGGACAGAGGAGGGAGTA 58.185 57.895 0.00 0.00 0.00 2.59
1791 1859 3.620903 TGGGACAGAGGAGGGAGT 58.379 61.111 0.00 0.00 0.00 3.85
1842 1910 8.804204 CCCTCCGTCTTATAATATAAGAGTGTT 58.196 37.037 19.73 0.00 34.59 3.32
1843 1911 8.168725 TCCCTCCGTCTTATAATATAAGAGTGT 58.831 37.037 19.73 0.00 34.59 3.55
1844 1912 8.577048 TCCCTCCGTCTTATAATATAAGAGTG 57.423 38.462 19.73 15.42 34.59 3.51
1845 1913 9.771140 ATTCCCTCCGTCTTATAATATAAGAGT 57.229 33.333 19.73 0.00 34.59 3.24
1856 1924 9.597681 TCTAATTTACTATTCCCTCCGTCTTAT 57.402 33.333 0.00 0.00 0.00 1.73
1857 1925 9.597681 ATCTAATTTACTATTCCCTCCGTCTTA 57.402 33.333 0.00 0.00 0.00 2.10
1858 1926 7.909485 TCTAATTTACTATTCCCTCCGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
1859 1927 8.368668 CAATCTAATTTACTATTCCCTCCGTCT 58.631 37.037 0.00 0.00 0.00 4.18
1860 1928 8.365647 TCAATCTAATTTACTATTCCCTCCGTC 58.634 37.037 0.00 0.00 0.00 4.79
1861 1929 8.258850 TCAATCTAATTTACTATTCCCTCCGT 57.741 34.615 0.00 0.00 0.00 4.69
1862 1930 9.372369 GATCAATCTAATTTACTATTCCCTCCG 57.628 37.037 0.00 0.00 0.00 4.63
1916 1986 0.916358 AACCACCTAGCCTGCCAGAT 60.916 55.000 0.00 0.00 0.00 2.90
1918 1988 0.251341 AAAACCACCTAGCCTGCCAG 60.251 55.000 0.00 0.00 0.00 4.85
1919 1989 0.251165 GAAAACCACCTAGCCTGCCA 60.251 55.000 0.00 0.00 0.00 4.92
1920 1990 0.251165 TGAAAACCACCTAGCCTGCC 60.251 55.000 0.00 0.00 0.00 4.85
1921 1991 1.745653 GATGAAAACCACCTAGCCTGC 59.254 52.381 0.00 0.00 0.00 4.85
1923 1993 4.322057 AATGATGAAAACCACCTAGCCT 57.678 40.909 0.00 0.00 0.00 4.58
1927 1997 5.835819 TCCAACAAATGATGAAAACCACCTA 59.164 36.000 0.00 0.00 0.00 3.08
1928 1998 4.653341 TCCAACAAATGATGAAAACCACCT 59.347 37.500 0.00 0.00 0.00 4.00
1930 2000 8.034215 TCATATCCAACAAATGATGAAAACCAC 58.966 33.333 0.00 0.00 0.00 4.16
1931 2001 8.131847 TCATATCCAACAAATGATGAAAACCA 57.868 30.769 0.00 0.00 0.00 3.67
1935 2005 9.917129 GCATATCATATCCAACAAATGATGAAA 57.083 29.630 7.18 0.00 39.90 2.69
1948 2018 3.257127 TCCGTTGACGCATATCATATCCA 59.743 43.478 0.00 0.00 38.18 3.41
1950 2020 5.839262 TTTCCGTTGACGCATATCATATC 57.161 39.130 0.00 0.00 38.18 1.63
1999 2069 0.680921 GCTATCACTTTGGCCTGCCA 60.681 55.000 6.80 6.80 45.63 4.92
2000 2070 0.680921 TGCTATCACTTTGGCCTGCC 60.681 55.000 3.32 0.00 0.00 4.85
2001 2071 1.135286 GTTGCTATCACTTTGGCCTGC 60.135 52.381 3.32 0.00 0.00 4.85
2002 2072 2.161855 TGTTGCTATCACTTTGGCCTG 58.838 47.619 3.32 0.00 0.00 4.85
2003 2073 2.584835 TGTTGCTATCACTTTGGCCT 57.415 45.000 3.32 0.00 0.00 5.19
2004 2074 2.672195 GCTTGTTGCTATCACTTTGGCC 60.672 50.000 0.00 0.00 38.95 5.36
2005 2075 2.030007 TGCTTGTTGCTATCACTTTGGC 60.030 45.455 0.00 0.00 43.37 4.52
2006 2076 3.921119 TGCTTGTTGCTATCACTTTGG 57.079 42.857 0.00 0.00 43.37 3.28
2007 2077 4.090930 GCATTGCTTGTTGCTATCACTTTG 59.909 41.667 0.16 0.00 43.37 2.77
2008 2078 4.240096 GCATTGCTTGTTGCTATCACTTT 58.760 39.130 0.16 0.00 43.37 2.66
2009 2079 3.367703 GGCATTGCTTGTTGCTATCACTT 60.368 43.478 8.82 0.00 43.37 3.16
2010 2080 2.165030 GGCATTGCTTGTTGCTATCACT 59.835 45.455 8.82 0.00 43.37 3.41
2011 2081 2.094597 TGGCATTGCTTGTTGCTATCAC 60.095 45.455 8.82 0.00 43.37 3.06
2012 2082 2.169330 TGGCATTGCTTGTTGCTATCA 58.831 42.857 8.82 0.00 43.37 2.15
2013 2083 2.945447 TGGCATTGCTTGTTGCTATC 57.055 45.000 8.82 0.00 43.37 2.08
2014 2084 5.341872 TTTATGGCATTGCTTGTTGCTAT 57.658 34.783 4.78 0.00 41.97 2.97
2015 2085 4.797800 TTTATGGCATTGCTTGTTGCTA 57.202 36.364 4.78 0.00 43.37 3.49
2016 2086 3.681593 TTTATGGCATTGCTTGTTGCT 57.318 38.095 4.78 0.00 43.37 3.91
2017 2087 5.987347 AGATATTTATGGCATTGCTTGTTGC 59.013 36.000 4.78 0.00 43.25 4.17
2018 2088 7.381408 CAGAGATATTTATGGCATTGCTTGTTG 59.619 37.037 4.78 0.00 0.00 3.33
2019 2089 7.431249 CAGAGATATTTATGGCATTGCTTGTT 58.569 34.615 4.78 0.00 0.00 2.83
2020 2090 6.516194 GCAGAGATATTTATGGCATTGCTTGT 60.516 38.462 4.78 0.00 0.00 3.16
2021 2091 5.862323 GCAGAGATATTTATGGCATTGCTTG 59.138 40.000 4.78 0.00 0.00 4.01
2022 2092 5.047519 GGCAGAGATATTTATGGCATTGCTT 60.048 40.000 4.78 0.00 38.07 3.91
2023 2093 4.461781 GGCAGAGATATTTATGGCATTGCT 59.538 41.667 4.78 0.00 38.07 3.91
2024 2094 4.673580 CGGCAGAGATATTTATGGCATTGC 60.674 45.833 4.78 5.84 38.05 3.56
2025 2095 4.142534 CCGGCAGAGATATTTATGGCATTG 60.143 45.833 4.78 0.00 38.05 2.82
2026 2096 4.012374 CCGGCAGAGATATTTATGGCATT 58.988 43.478 4.78 0.00 38.05 3.56
2027 2097 3.614092 CCGGCAGAGATATTTATGGCAT 58.386 45.455 13.67 4.88 38.05 4.40
2028 2098 2.875672 GCCGGCAGAGATATTTATGGCA 60.876 50.000 24.80 0.00 39.70 4.92
2029 2099 1.740025 GCCGGCAGAGATATTTATGGC 59.260 52.381 24.80 4.54 35.08 4.40
2030 2100 3.340814 AGCCGGCAGAGATATTTATGG 57.659 47.619 31.54 0.00 0.00 2.74
2031 2101 4.820897 TGTAGCCGGCAGAGATATTTATG 58.179 43.478 31.54 0.00 0.00 1.90
2032 2102 5.246203 TCTTGTAGCCGGCAGAGATATTTAT 59.754 40.000 31.54 5.27 0.00 1.40
2033 2103 4.587262 TCTTGTAGCCGGCAGAGATATTTA 59.413 41.667 31.54 5.57 0.00 1.40
2034 2104 3.388024 TCTTGTAGCCGGCAGAGATATTT 59.612 43.478 31.54 6.76 0.00 1.40
2035 2105 2.965831 TCTTGTAGCCGGCAGAGATATT 59.034 45.455 31.54 7.63 0.00 1.28
2036 2106 2.598565 TCTTGTAGCCGGCAGAGATAT 58.401 47.619 31.54 8.51 0.00 1.63
2037 2107 2.067365 TCTTGTAGCCGGCAGAGATA 57.933 50.000 31.54 9.03 0.00 1.98
2038 2108 1.137872 CTTCTTGTAGCCGGCAGAGAT 59.862 52.381 31.54 10.27 0.00 2.75
2039 2109 0.532573 CTTCTTGTAGCCGGCAGAGA 59.467 55.000 31.54 21.44 0.00 3.10
2040 2110 0.247736 ACTTCTTGTAGCCGGCAGAG 59.752 55.000 31.54 19.46 0.00 3.35
2041 2111 0.037326 CACTTCTTGTAGCCGGCAGA 60.037 55.000 31.54 20.05 0.00 4.26
2042 2112 0.037326 TCACTTCTTGTAGCCGGCAG 60.037 55.000 31.54 17.75 0.00 4.85
2043 2113 0.394938 TTCACTTCTTGTAGCCGGCA 59.605 50.000 31.54 12.31 0.00 5.69
2044 2114 0.796927 GTTCACTTCTTGTAGCCGGC 59.203 55.000 21.89 21.89 0.00 6.13
2045 2115 1.439679 GGTTCACTTCTTGTAGCCGG 58.560 55.000 0.00 0.00 0.00 6.13
2046 2116 1.439679 GGGTTCACTTCTTGTAGCCG 58.560 55.000 0.00 0.00 33.95 5.52
2047 2117 1.613520 GGGGGTTCACTTCTTGTAGCC 60.614 57.143 0.00 0.00 41.30 3.93
2048 2118 1.351350 AGGGGGTTCACTTCTTGTAGC 59.649 52.381 0.00 0.00 0.00 3.58
2049 2119 2.637872 TGAGGGGGTTCACTTCTTGTAG 59.362 50.000 0.00 0.00 0.00 2.74
2050 2120 2.637872 CTGAGGGGGTTCACTTCTTGTA 59.362 50.000 0.00 0.00 0.00 2.41
2051 2121 1.421646 CTGAGGGGGTTCACTTCTTGT 59.578 52.381 0.00 0.00 0.00 3.16
2052 2122 1.271597 CCTGAGGGGGTTCACTTCTTG 60.272 57.143 0.00 0.00 0.00 3.02
2053 2123 1.068121 CCTGAGGGGGTTCACTTCTT 58.932 55.000 0.00 0.00 0.00 2.52
2054 2124 0.104409 ACCTGAGGGGGTTCACTTCT 60.104 55.000 2.38 0.00 40.03 2.85
2055 2125 0.771755 AACCTGAGGGGGTTCACTTC 59.228 55.000 2.38 0.00 45.38 3.01
2056 2126 1.231963 AAACCTGAGGGGGTTCACTT 58.768 50.000 2.38 0.00 42.20 3.16
2057 2127 1.133482 CAAAACCTGAGGGGGTTCACT 60.133 52.381 2.38 0.00 45.78 3.41
2058 2128 1.328279 CAAAACCTGAGGGGGTTCAC 58.672 55.000 2.38 0.00 45.78 3.18
2059 2129 0.187361 CCAAAACCTGAGGGGGTTCA 59.813 55.000 2.38 0.00 45.78 3.18
2060 2130 0.187606 ACCAAAACCTGAGGGGGTTC 59.812 55.000 2.38 0.00 45.78 3.62
2062 2132 1.536644 TAACCAAAACCTGAGGGGGT 58.463 50.000 2.38 1.73 42.05 4.95
2063 2133 2.919772 ATAACCAAAACCTGAGGGGG 57.080 50.000 2.38 1.03 40.03 5.40
2064 2134 5.269189 ACAATATAACCAAAACCTGAGGGG 58.731 41.667 2.38 0.00 41.89 4.79
2065 2135 5.949354 TGACAATATAACCAAAACCTGAGGG 59.051 40.000 2.38 0.00 38.88 4.30
2066 2136 6.659242 AGTGACAATATAACCAAAACCTGAGG 59.341 38.462 0.00 0.00 0.00 3.86
2067 2137 7.607991 AGAGTGACAATATAACCAAAACCTGAG 59.392 37.037 0.00 0.00 0.00 3.35
2068 2138 7.458397 AGAGTGACAATATAACCAAAACCTGA 58.542 34.615 0.00 0.00 0.00 3.86
2069 2139 7.148239 GGAGAGTGACAATATAACCAAAACCTG 60.148 40.741 0.00 0.00 0.00 4.00
2070 2140 6.884836 GGAGAGTGACAATATAACCAAAACCT 59.115 38.462 0.00 0.00 0.00 3.50
2071 2141 6.095021 GGGAGAGTGACAATATAACCAAAACC 59.905 42.308 0.00 0.00 0.00 3.27
2072 2142 6.095021 GGGGAGAGTGACAATATAACCAAAAC 59.905 42.308 0.00 0.00 0.00 2.43
2073 2143 6.011981 AGGGGAGAGTGACAATATAACCAAAA 60.012 38.462 0.00 0.00 0.00 2.44
2074 2144 5.491078 AGGGGAGAGTGACAATATAACCAAA 59.509 40.000 0.00 0.00 0.00 3.28
2075 2145 5.036916 AGGGGAGAGTGACAATATAACCAA 58.963 41.667 0.00 0.00 0.00 3.67
2076 2146 4.631234 AGGGGAGAGTGACAATATAACCA 58.369 43.478 0.00 0.00 0.00 3.67
2077 2147 5.632034 AAGGGGAGAGTGACAATATAACC 57.368 43.478 0.00 0.00 0.00 2.85
2078 2148 7.065923 GTGAAAAGGGGAGAGTGACAATATAAC 59.934 40.741 0.00 0.00 0.00 1.89
2079 2149 7.110155 GTGAAAAGGGGAGAGTGACAATATAA 58.890 38.462 0.00 0.00 0.00 0.98
2080 2150 6.629515 CGTGAAAAGGGGAGAGTGACAATATA 60.630 42.308 0.00 0.00 0.00 0.86
2081 2151 5.501156 GTGAAAAGGGGAGAGTGACAATAT 58.499 41.667 0.00 0.00 0.00 1.28
2082 2152 4.562757 CGTGAAAAGGGGAGAGTGACAATA 60.563 45.833 0.00 0.00 0.00 1.90
2083 2153 3.756117 GTGAAAAGGGGAGAGTGACAAT 58.244 45.455 0.00 0.00 0.00 2.71
2084 2154 2.484770 CGTGAAAAGGGGAGAGTGACAA 60.485 50.000 0.00 0.00 0.00 3.18
2085 2155 1.070134 CGTGAAAAGGGGAGAGTGACA 59.930 52.381 0.00 0.00 0.00 3.58
2086 2156 1.797025 CGTGAAAAGGGGAGAGTGAC 58.203 55.000 0.00 0.00 0.00 3.67
2087 2157 0.034896 GCGTGAAAAGGGGAGAGTGA 59.965 55.000 0.00 0.00 0.00 3.41
2088 2158 0.035458 AGCGTGAAAAGGGGAGAGTG 59.965 55.000 0.00 0.00 0.00 3.51
2089 2159 0.321996 GAGCGTGAAAAGGGGAGAGT 59.678 55.000 0.00 0.00 0.00 3.24
2090 2160 0.321671 TGAGCGTGAAAAGGGGAGAG 59.678 55.000 0.00 0.00 0.00 3.20
2091 2161 0.034896 GTGAGCGTGAAAAGGGGAGA 59.965 55.000 0.00 0.00 0.00 3.71
2092 2162 0.035458 AGTGAGCGTGAAAAGGGGAG 59.965 55.000 0.00 0.00 0.00 4.30
2093 2163 1.275291 CTAGTGAGCGTGAAAAGGGGA 59.725 52.381 0.00 0.00 0.00 4.81
2094 2164 1.275291 TCTAGTGAGCGTGAAAAGGGG 59.725 52.381 0.00 0.00 0.00 4.79
2095 2165 2.743636 TCTAGTGAGCGTGAAAAGGG 57.256 50.000 0.00 0.00 0.00 3.95
2096 2166 4.098044 TCCTATCTAGTGAGCGTGAAAAGG 59.902 45.833 0.00 0.00 0.00 3.11
2097 2167 5.250235 TCCTATCTAGTGAGCGTGAAAAG 57.750 43.478 0.00 0.00 0.00 2.27
2098 2168 5.185249 ACTTCCTATCTAGTGAGCGTGAAAA 59.815 40.000 0.00 0.00 0.00 2.29
2099 2169 4.705507 ACTTCCTATCTAGTGAGCGTGAAA 59.294 41.667 0.00 0.00 0.00 2.69
2100 2170 4.096532 CACTTCCTATCTAGTGAGCGTGAA 59.903 45.833 0.00 0.00 43.45 3.18
2101 2171 3.628032 CACTTCCTATCTAGTGAGCGTGA 59.372 47.826 0.00 0.00 43.45 4.35
2102 2172 3.793801 GCACTTCCTATCTAGTGAGCGTG 60.794 52.174 6.43 0.00 43.45 5.34
2103 2173 2.359531 GCACTTCCTATCTAGTGAGCGT 59.640 50.000 6.43 0.00 43.45 5.07
2104 2174 2.603412 CGCACTTCCTATCTAGTGAGCG 60.603 54.545 6.43 0.00 43.45 5.03
2105 2175 2.287909 CCGCACTTCCTATCTAGTGAGC 60.288 54.545 6.43 0.00 43.45 4.26
2106 2176 2.287909 GCCGCACTTCCTATCTAGTGAG 60.288 54.545 6.43 3.07 43.45 3.51
2107 2177 1.681793 GCCGCACTTCCTATCTAGTGA 59.318 52.381 6.43 0.00 43.45 3.41
2147 2217 1.077787 CCAGGTTGGCTATTGCGGA 60.078 57.895 0.00 0.00 40.82 5.54
2242 2313 4.968259 TGTGTACTACTGAACCTTTGCAT 58.032 39.130 0.00 0.00 0.00 3.96
2308 2379 3.885976 TTCCCTTATCCCACACAACAA 57.114 42.857 0.00 0.00 0.00 2.83
2310 2381 3.763057 AGTTTCCCTTATCCCACACAAC 58.237 45.455 0.00 0.00 0.00 3.32
2349 2429 2.309613 AGGTGAGTGCTTGAATTTGCA 58.690 42.857 0.00 0.00 36.79 4.08
2366 2446 4.396357 TTGAATGGGGTTCATTGTAGGT 57.604 40.909 0.00 0.00 45.77 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.