Multiple sequence alignment - TraesCS4D01G075600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G075600 chr4D 100.000 3446 0 0 1 3446 50069792 50073237 0.000000e+00 6364.0
1 TraesCS4D01G075600 chr4D 81.237 1455 256 13 996 2441 26480002 26481448 0.000000e+00 1158.0
2 TraesCS4D01G075600 chr4D 98.413 63 1 0 3384 3446 50081292 50081354 1.010000e-20 111.0
3 TraesCS4D01G075600 chr4B 93.795 1934 60 20 586 2501 73610373 73608482 0.000000e+00 2852.0
4 TraesCS4D01G075600 chr4B 80.893 1455 261 14 996 2441 39014848 39016294 0.000000e+00 1131.0
5 TraesCS4D01G075600 chr4B 85.126 1069 147 6 1113 2171 73654625 73653559 0.000000e+00 1083.0
6 TraesCS4D01G075600 chr4B 95.246 589 23 5 1 586 73661136 73660550 0.000000e+00 928.0
7 TraesCS4D01G075600 chr4B 90.873 252 13 4 2316 2567 73478301 73478060 2.560000e-86 329.0
8 TraesCS4D01G075600 chr4B 88.789 223 19 2 1 218 73610779 73610558 5.670000e-68 268.0
9 TraesCS4D01G075600 chr4B 93.182 132 8 1 584 715 73659659 73659529 3.510000e-45 193.0
10 TraesCS4D01G075600 chr4A 92.517 1951 75 34 675 2609 547046468 547044573 0.000000e+00 2728.0
11 TraesCS4D01G075600 chr4A 81.168 1455 257 13 996 2441 576931971 576930525 0.000000e+00 1153.0
12 TraesCS4D01G075600 chr4A 88.914 442 22 6 2944 3384 547044036 547043621 1.420000e-143 520.0
13 TraesCS4D01G075600 chr4A 89.116 294 31 1 2619 2911 547044324 547044031 7.030000e-97 364.0
14 TraesCS4D01G075600 chr4A 96.774 62 1 1 3386 3446 547050501 547050562 6.080000e-18 102.0
15 TraesCS4D01G075600 chr4A 100.000 30 0 0 16 45 546958576 546958605 4.800000e-04 56.5
16 TraesCS4D01G075600 chr5B 83.391 1457 223 17 995 2441 577227231 577228678 0.000000e+00 1332.0
17 TraesCS4D01G075600 chr5A 83.333 1458 222 19 995 2441 590540036 590541483 0.000000e+00 1327.0
18 TraesCS4D01G075600 chr5A 87.239 431 50 3 2031 2459 128415726 128416153 1.440000e-133 486.0
19 TraesCS4D01G075600 chr5D 83.207 1453 227 15 998 2441 469501792 469503236 0.000000e+00 1315.0
20 TraesCS4D01G075600 chr5D 85.015 1308 133 30 1224 2506 59619728 59618459 0.000000e+00 1271.0
21 TraesCS4D01G075600 chr1A 86.638 464 54 5 2033 2495 15078227 15078683 1.100000e-139 507.0
22 TraesCS4D01G075600 chr1A 86.422 464 55 5 2033 2495 15122086 15122542 5.130000e-138 501.0
23 TraesCS4D01G075600 chr1A 85.991 464 57 5 2033 2495 15034829 15035285 1.110000e-134 490.0
24 TraesCS4D01G075600 chr7D 86.609 463 54 5 2032 2493 36613594 36613139 3.970000e-139 505.0
25 TraesCS4D01G075600 chr6B 85.682 447 44 11 2068 2506 429622065 429622499 1.460000e-123 453.0
26 TraesCS4D01G075600 chr6B 87.719 171 15 3 2706 2874 469041955 469042121 9.760000e-46 195.0
27 TraesCS4D01G075600 chr6D 88.824 170 12 5 2706 2872 115047020 115047185 5.830000e-48 202.0
28 TraesCS4D01G075600 chr3D 88.304 171 14 3 2706 2874 238999575 238999409 2.100000e-47 200.0
29 TraesCS4D01G075600 chr2D 88.623 167 14 2 2706 2871 515829557 515829395 7.540000e-47 198.0
30 TraesCS4D01G075600 chr7A 88.166 169 12 5 2706 2872 731105700 731105862 9.760000e-46 195.0
31 TraesCS4D01G075600 chr7A 88.166 169 12 5 2706 2872 731137729 731137891 9.760000e-46 195.0
32 TraesCS4D01G075600 chr2B 87.356 174 16 3 2701 2872 53410704 53410873 9.760000e-46 195.0
33 TraesCS4D01G075600 chr1B 87.283 173 16 3 2703 2873 66488780 66488948 3.510000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G075600 chr4D 50069792 50073237 3445 False 6364.0 6364 100.000000 1 3446 1 chr4D.!!$F2 3445
1 TraesCS4D01G075600 chr4D 26480002 26481448 1446 False 1158.0 1158 81.237000 996 2441 1 chr4D.!!$F1 1445
2 TraesCS4D01G075600 chr4B 73608482 73610779 2297 True 1560.0 2852 91.292000 1 2501 2 chr4B.!!$R3 2500
3 TraesCS4D01G075600 chr4B 39014848 39016294 1446 False 1131.0 1131 80.893000 996 2441 1 chr4B.!!$F1 1445
4 TraesCS4D01G075600 chr4B 73653559 73654625 1066 True 1083.0 1083 85.126000 1113 2171 1 chr4B.!!$R2 1058
5 TraesCS4D01G075600 chr4B 73659529 73661136 1607 True 560.5 928 94.214000 1 715 2 chr4B.!!$R4 714
6 TraesCS4D01G075600 chr4A 547043621 547046468 2847 True 1204.0 2728 90.182333 675 3384 3 chr4A.!!$R2 2709
7 TraesCS4D01G075600 chr4A 576930525 576931971 1446 True 1153.0 1153 81.168000 996 2441 1 chr4A.!!$R1 1445
8 TraesCS4D01G075600 chr5B 577227231 577228678 1447 False 1332.0 1332 83.391000 995 2441 1 chr5B.!!$F1 1446
9 TraesCS4D01G075600 chr5A 590540036 590541483 1447 False 1327.0 1327 83.333000 995 2441 1 chr5A.!!$F2 1446
10 TraesCS4D01G075600 chr5D 469501792 469503236 1444 False 1315.0 1315 83.207000 998 2441 1 chr5D.!!$F1 1443
11 TraesCS4D01G075600 chr5D 59618459 59619728 1269 True 1271.0 1271 85.015000 1224 2506 1 chr5D.!!$R1 1282

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
532 553 0.036164 TGGAAGGTGGTGTTCGATGG 59.964 55.0 0.00 0.0 0.00 3.51 F
660 681 0.038166 GGAAACATGGGACTGGCTGA 59.962 55.0 0.00 0.0 0.00 4.26 F
913 1396 0.251916 TTTGGCTCGTCCATCCGATT 59.748 50.0 0.37 0.0 46.04 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2442 3180 0.167470 CAGTGTGCATCGCCTTTCAG 59.833 55.0 0.00 0.00 0.0 3.02 R
2443 3181 0.250252 TCAGTGTGCATCGCCTTTCA 60.250 50.0 0.00 0.00 0.0 2.69 R
2872 3853 0.107993 ATCCTCATGTGCACGGTCTG 60.108 55.0 13.13 7.23 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
200 207 1.647346 TGTCATAACGCGATTCCCAC 58.353 50.000 15.93 2.26 0.00 4.61
294 301 3.826729 ACCATTCACCAGCTAACTTTTCC 59.173 43.478 0.00 0.00 0.00 3.13
377 390 5.349543 GGTGTCCCTATGTAACGTTACAAAG 59.650 44.000 36.80 27.64 45.74 2.77
512 533 9.375974 ACATGGGACTAGCTAATAGTTACATAA 57.624 33.333 0.00 0.00 45.06 1.90
515 536 8.812972 TGGGACTAGCTAATAGTTACATAATGG 58.187 37.037 0.00 0.00 45.06 3.16
516 537 9.032624 GGGACTAGCTAATAGTTACATAATGGA 57.967 37.037 0.00 0.00 45.06 3.41
522 543 8.157476 AGCTAATAGTTACATAATGGAAGGTGG 58.843 37.037 0.00 0.00 0.00 4.61
523 544 7.937394 GCTAATAGTTACATAATGGAAGGTGGT 59.063 37.037 0.00 0.00 0.00 4.16
524 545 9.273016 CTAATAGTTACATAATGGAAGGTGGTG 57.727 37.037 0.00 0.00 0.00 4.17
525 546 5.514500 AGTTACATAATGGAAGGTGGTGT 57.486 39.130 0.00 0.00 0.00 4.16
526 547 5.887754 AGTTACATAATGGAAGGTGGTGTT 58.112 37.500 0.00 0.00 0.00 3.32
527 548 5.944007 AGTTACATAATGGAAGGTGGTGTTC 59.056 40.000 0.00 0.00 0.00 3.18
528 549 3.343617 ACATAATGGAAGGTGGTGTTCG 58.656 45.455 0.00 0.00 0.00 3.95
529 550 3.008594 ACATAATGGAAGGTGGTGTTCGA 59.991 43.478 0.00 0.00 0.00 3.71
530 551 2.879103 AATGGAAGGTGGTGTTCGAT 57.121 45.000 0.00 0.00 0.00 3.59
531 552 2.113860 ATGGAAGGTGGTGTTCGATG 57.886 50.000 0.00 0.00 0.00 3.84
532 553 0.036164 TGGAAGGTGGTGTTCGATGG 59.964 55.000 0.00 0.00 0.00 3.51
533 554 0.323629 GGAAGGTGGTGTTCGATGGA 59.676 55.000 0.00 0.00 0.00 3.41
534 555 1.065418 GGAAGGTGGTGTTCGATGGAT 60.065 52.381 0.00 0.00 0.00 3.41
535 556 2.280628 GAAGGTGGTGTTCGATGGATC 58.719 52.381 0.00 0.00 0.00 3.36
536 557 1.573108 AGGTGGTGTTCGATGGATCT 58.427 50.000 0.00 0.00 0.00 2.75
537 558 1.208052 AGGTGGTGTTCGATGGATCTG 59.792 52.381 0.00 0.00 0.00 2.90
538 559 1.009829 GTGGTGTTCGATGGATCTGC 58.990 55.000 0.00 0.00 0.00 4.26
539 560 0.107703 TGGTGTTCGATGGATCTGCC 60.108 55.000 0.00 0.00 37.10 4.85
540 561 0.815615 GGTGTTCGATGGATCTGCCC 60.816 60.000 0.00 0.00 34.97 5.36
541 562 1.143838 TGTTCGATGGATCTGCCCG 59.856 57.895 0.00 0.00 34.97 6.13
542 563 1.326951 TGTTCGATGGATCTGCCCGA 61.327 55.000 0.00 0.00 34.97 5.14
543 564 0.179084 GTTCGATGGATCTGCCCGAA 60.179 55.000 0.00 0.00 37.79 4.30
544 565 0.539518 TTCGATGGATCTGCCCGAAA 59.460 50.000 0.00 0.00 37.38 3.46
545 566 0.179084 TCGATGGATCTGCCCGAAAC 60.179 55.000 0.00 0.00 34.97 2.78
546 567 0.461870 CGATGGATCTGCCCGAAACA 60.462 55.000 0.00 0.00 34.97 2.83
547 568 1.303309 GATGGATCTGCCCGAAACAG 58.697 55.000 0.00 0.00 36.44 3.16
548 569 0.620556 ATGGATCTGCCCGAAACAGT 59.379 50.000 0.00 0.00 36.50 3.55
549 570 0.321564 TGGATCTGCCCGAAACAGTG 60.322 55.000 0.00 0.00 36.50 3.66
550 571 0.321653 GGATCTGCCCGAAACAGTGT 60.322 55.000 0.00 0.00 36.50 3.55
551 572 1.066430 GGATCTGCCCGAAACAGTGTA 60.066 52.381 0.00 0.00 36.50 2.90
552 573 2.271800 GATCTGCCCGAAACAGTGTAG 58.728 52.381 0.00 0.00 36.50 2.74
553 574 0.320374 TCTGCCCGAAACAGTGTAGG 59.680 55.000 0.00 0.45 36.50 3.18
554 575 0.320374 CTGCCCGAAACAGTGTAGGA 59.680 55.000 12.35 0.00 0.00 2.94
555 576 0.759959 TGCCCGAAACAGTGTAGGAA 59.240 50.000 12.35 0.00 0.00 3.36
556 577 1.154197 GCCCGAAACAGTGTAGGAAC 58.846 55.000 12.35 2.99 0.00 3.62
557 578 1.425412 CCCGAAACAGTGTAGGAACG 58.575 55.000 12.35 7.06 0.00 3.95
558 579 1.269936 CCCGAAACAGTGTAGGAACGT 60.270 52.381 12.35 0.00 0.00 3.99
559 580 2.030007 CCCGAAACAGTGTAGGAACGTA 60.030 50.000 12.35 0.00 0.00 3.57
560 581 3.552684 CCCGAAACAGTGTAGGAACGTAA 60.553 47.826 12.35 0.00 0.00 3.18
561 582 4.050553 CCGAAACAGTGTAGGAACGTAAA 58.949 43.478 0.00 0.00 0.00 2.01
562 583 4.507388 CCGAAACAGTGTAGGAACGTAAAA 59.493 41.667 0.00 0.00 0.00 1.52
563 584 5.178067 CCGAAACAGTGTAGGAACGTAAAAT 59.822 40.000 0.00 0.00 0.00 1.82
564 585 6.068931 CGAAACAGTGTAGGAACGTAAAATG 58.931 40.000 0.00 0.00 0.00 2.32
565 586 6.292488 CGAAACAGTGTAGGAACGTAAAATGT 60.292 38.462 0.00 0.00 0.00 2.71
566 587 5.917541 ACAGTGTAGGAACGTAAAATGTG 57.082 39.130 0.00 0.00 0.00 3.21
567 588 4.753107 ACAGTGTAGGAACGTAAAATGTGG 59.247 41.667 0.00 0.00 0.00 4.17
568 589 4.153475 CAGTGTAGGAACGTAAAATGTGGG 59.847 45.833 0.00 0.00 0.00 4.61
569 590 3.437741 GTGTAGGAACGTAAAATGTGGGG 59.562 47.826 0.00 0.00 0.00 4.96
570 591 2.209690 AGGAACGTAAAATGTGGGGG 57.790 50.000 0.00 0.00 0.00 5.40
571 592 1.426215 AGGAACGTAAAATGTGGGGGT 59.574 47.619 0.00 0.00 0.00 4.95
572 593 2.158430 AGGAACGTAAAATGTGGGGGTT 60.158 45.455 0.00 0.00 0.00 4.11
573 594 3.074242 AGGAACGTAAAATGTGGGGGTTA 59.926 43.478 0.00 0.00 0.00 2.85
574 595 3.191162 GGAACGTAAAATGTGGGGGTTAC 59.809 47.826 0.00 0.00 0.00 2.50
575 596 2.794103 ACGTAAAATGTGGGGGTTACC 58.206 47.619 0.00 0.00 39.11 2.85
576 597 2.376181 ACGTAAAATGTGGGGGTTACCT 59.624 45.455 0.00 0.00 40.03 3.08
577 598 3.181430 ACGTAAAATGTGGGGGTTACCTT 60.181 43.478 0.00 0.00 40.03 3.50
578 599 3.441222 CGTAAAATGTGGGGGTTACCTTC 59.559 47.826 0.00 0.00 40.03 3.46
579 600 3.915346 AAAATGTGGGGGTTACCTTCT 57.085 42.857 0.00 0.00 40.03 2.85
580 601 3.451402 AAATGTGGGGGTTACCTTCTC 57.549 47.619 0.00 0.00 40.03 2.87
581 602 2.361085 ATGTGGGGGTTACCTTCTCT 57.639 50.000 0.00 0.00 40.03 3.10
582 603 1.358152 TGTGGGGGTTACCTTCTCTG 58.642 55.000 0.00 0.00 40.03 3.35
583 604 1.359168 GTGGGGGTTACCTTCTCTGT 58.641 55.000 0.00 0.00 40.03 3.41
584 605 1.703513 GTGGGGGTTACCTTCTCTGTT 59.296 52.381 0.00 0.00 40.03 3.16
585 606 1.702957 TGGGGGTTACCTTCTCTGTTG 59.297 52.381 0.00 0.00 40.03 3.33
586 607 1.982958 GGGGGTTACCTTCTCTGTTGA 59.017 52.381 0.00 0.00 40.03 3.18
587 608 2.374170 GGGGGTTACCTTCTCTGTTGAA 59.626 50.000 0.00 0.00 40.03 2.69
588 609 3.181437 GGGGGTTACCTTCTCTGTTGAAA 60.181 47.826 0.00 0.00 40.03 2.69
589 610 4.508584 GGGGGTTACCTTCTCTGTTGAAAT 60.509 45.833 0.00 0.00 40.03 2.17
590 611 5.077564 GGGGTTACCTTCTCTGTTGAAATT 58.922 41.667 0.00 0.00 36.80 1.82
591 612 5.538813 GGGGTTACCTTCTCTGTTGAAATTT 59.461 40.000 0.00 0.00 36.80 1.82
592 613 6.041637 GGGGTTACCTTCTCTGTTGAAATTTT 59.958 38.462 0.00 0.00 36.80 1.82
593 614 6.923508 GGGTTACCTTCTCTGTTGAAATTTTG 59.076 38.462 0.00 0.00 0.00 2.44
594 615 7.201875 GGGTTACCTTCTCTGTTGAAATTTTGA 60.202 37.037 0.00 0.00 0.00 2.69
595 616 8.194769 GGTTACCTTCTCTGTTGAAATTTTGAA 58.805 33.333 0.00 0.00 0.00 2.69
596 617 9.750125 GTTACCTTCTCTGTTGAAATTTTGAAT 57.250 29.630 0.00 0.00 0.00 2.57
597 618 9.748708 TTACCTTCTCTGTTGAAATTTTGAATG 57.251 29.630 0.00 0.00 0.00 2.67
598 619 7.212274 ACCTTCTCTGTTGAAATTTTGAATGG 58.788 34.615 0.00 0.00 0.00 3.16
599 620 6.146673 CCTTCTCTGTTGAAATTTTGAATGGC 59.853 38.462 0.00 0.00 0.00 4.40
600 621 6.159299 TCTCTGTTGAAATTTTGAATGGCA 57.841 33.333 0.00 0.00 0.00 4.92
601 622 6.580788 TCTCTGTTGAAATTTTGAATGGCAA 58.419 32.000 0.00 0.00 33.88 4.52
602 623 7.046652 TCTCTGTTGAAATTTTGAATGGCAAA 58.953 30.769 0.00 0.00 44.38 3.68
610 631 2.679355 TTGAATGGCAAAACGACGAG 57.321 45.000 0.00 0.00 32.46 4.18
611 632 1.872388 TGAATGGCAAAACGACGAGA 58.128 45.000 0.00 0.00 0.00 4.04
612 633 2.214347 TGAATGGCAAAACGACGAGAA 58.786 42.857 0.00 0.00 0.00 2.87
613 634 2.223144 TGAATGGCAAAACGACGAGAAG 59.777 45.455 0.00 0.00 0.00 2.85
614 635 2.163818 ATGGCAAAACGACGAGAAGA 57.836 45.000 0.00 0.00 0.00 2.87
615 636 2.163818 TGGCAAAACGACGAGAAGAT 57.836 45.000 0.00 0.00 0.00 2.40
616 637 1.798223 TGGCAAAACGACGAGAAGATG 59.202 47.619 0.00 0.00 0.00 2.90
617 638 1.464189 GGCAAAACGACGAGAAGATGC 60.464 52.381 0.00 3.23 0.00 3.91
618 639 1.194547 GCAAAACGACGAGAAGATGCA 59.805 47.619 0.00 0.00 33.00 3.96
619 640 2.159653 GCAAAACGACGAGAAGATGCAT 60.160 45.455 0.00 0.00 33.00 3.96
620 641 3.410850 CAAAACGACGAGAAGATGCATG 58.589 45.455 2.46 0.00 0.00 4.06
621 642 2.654749 AACGACGAGAAGATGCATGA 57.345 45.000 2.46 0.00 0.00 3.07
622 643 2.200792 ACGACGAGAAGATGCATGAG 57.799 50.000 2.46 0.00 0.00 2.90
623 644 1.745653 ACGACGAGAAGATGCATGAGA 59.254 47.619 2.46 0.00 0.00 3.27
624 645 2.360483 ACGACGAGAAGATGCATGAGAT 59.640 45.455 2.46 0.00 0.00 2.75
625 646 2.979151 CGACGAGAAGATGCATGAGATC 59.021 50.000 2.46 0.00 0.00 2.75
626 647 2.979151 GACGAGAAGATGCATGAGATCG 59.021 50.000 2.46 11.46 35.21 3.69
627 648 2.288091 ACGAGAAGATGCATGAGATCGG 60.288 50.000 19.15 7.54 33.46 4.18
628 649 2.067766 GAGAAGATGCATGAGATCGGC 58.932 52.381 2.46 0.00 0.00 5.54
629 650 0.788995 GAAGATGCATGAGATCGGCG 59.211 55.000 2.46 0.00 0.00 6.46
630 651 0.602106 AAGATGCATGAGATCGGCGG 60.602 55.000 2.46 0.00 0.00 6.13
631 652 2.667536 ATGCATGAGATCGGCGGC 60.668 61.111 7.21 0.00 0.00 6.53
632 653 3.465258 ATGCATGAGATCGGCGGCA 62.465 57.895 10.53 7.18 35.54 5.69
633 654 2.667536 GCATGAGATCGGCGGCAT 60.668 61.111 10.53 3.31 0.00 4.40
634 655 2.256591 GCATGAGATCGGCGGCATT 61.257 57.895 10.53 0.00 0.00 3.56
635 656 1.572941 CATGAGATCGGCGGCATTG 59.427 57.895 10.53 0.00 0.00 2.82
636 657 1.598962 ATGAGATCGGCGGCATTGG 60.599 57.895 10.53 0.00 0.00 3.16
637 658 2.203070 GAGATCGGCGGCATTGGT 60.203 61.111 10.53 0.00 0.00 3.67
638 659 1.069090 GAGATCGGCGGCATTGGTA 59.931 57.895 10.53 0.00 0.00 3.25
639 660 1.222115 GAGATCGGCGGCATTGGTAC 61.222 60.000 10.53 0.00 0.00 3.34
640 661 1.227556 GATCGGCGGCATTGGTACT 60.228 57.895 10.53 0.00 0.00 2.73
641 662 1.498865 GATCGGCGGCATTGGTACTG 61.499 60.000 10.53 0.00 0.00 2.74
642 663 2.940890 ATCGGCGGCATTGGTACTGG 62.941 60.000 10.53 0.00 0.00 4.00
643 664 2.270850 GGCGGCATTGGTACTGGA 59.729 61.111 3.07 0.00 0.00 3.86
644 665 1.377987 GGCGGCATTGGTACTGGAA 60.378 57.895 3.07 0.00 0.00 3.53
645 666 0.963355 GGCGGCATTGGTACTGGAAA 60.963 55.000 3.07 0.00 0.00 3.13
646 667 0.170339 GCGGCATTGGTACTGGAAAC 59.830 55.000 0.00 0.00 0.00 2.78
647 668 1.529226 CGGCATTGGTACTGGAAACA 58.471 50.000 0.00 0.00 39.59 2.83
648 669 2.091541 CGGCATTGGTACTGGAAACAT 58.908 47.619 0.00 0.00 41.51 2.71
649 670 2.159393 CGGCATTGGTACTGGAAACATG 60.159 50.000 0.00 0.00 41.51 3.21
650 671 2.166254 GGCATTGGTACTGGAAACATGG 59.834 50.000 0.00 0.00 41.51 3.66
651 672 2.166254 GCATTGGTACTGGAAACATGGG 59.834 50.000 0.00 0.00 41.51 4.00
652 673 3.696045 CATTGGTACTGGAAACATGGGA 58.304 45.455 0.00 0.00 41.51 4.37
653 674 2.871096 TGGTACTGGAAACATGGGAC 57.129 50.000 0.00 0.00 41.51 4.46
654 675 2.344592 TGGTACTGGAAACATGGGACT 58.655 47.619 0.00 0.00 41.51 3.85
655 676 2.039746 TGGTACTGGAAACATGGGACTG 59.960 50.000 0.00 0.00 41.51 3.51
656 677 2.618045 GGTACTGGAAACATGGGACTGG 60.618 54.545 0.00 0.00 41.51 4.00
660 681 0.038166 GGAAACATGGGACTGGCTGA 59.962 55.000 0.00 0.00 0.00 4.26
704 725 2.527100 CCGAATCAGTGTAGGAACGTC 58.473 52.381 0.00 0.00 0.00 4.34
734 755 1.876156 GGTTACCATGCATCTAGCTGC 59.124 52.381 11.65 11.65 45.94 5.25
800 821 3.365364 GCCACATCTCGTTTCCTTTCTTG 60.365 47.826 0.00 0.00 0.00 3.02
808 829 5.983720 TCTCGTTTCCTTTCTTGTTCACTAG 59.016 40.000 0.00 0.00 0.00 2.57
811 835 5.050295 CGTTTCCTTTCTTGTTCACTAGACC 60.050 44.000 0.00 0.00 0.00 3.85
825 1230 5.745227 TCACTAGACCATTTGATTCCTTCC 58.255 41.667 0.00 0.00 0.00 3.46
875 1358 5.163088 ACCCAAGGTTTGTATCTCTGTTTCT 60.163 40.000 0.00 0.00 27.29 2.52
876 1359 6.043938 ACCCAAGGTTTGTATCTCTGTTTCTA 59.956 38.462 0.00 0.00 27.29 2.10
882 1365 8.254508 AGGTTTGTATCTCTGTTTCTATCTCAC 58.745 37.037 0.00 0.00 0.00 3.51
901 1384 1.271217 ACTTACGGGAGGTTTTGGCTC 60.271 52.381 0.00 0.00 0.00 4.70
908 1391 1.087501 GAGGTTTTGGCTCGTCCATC 58.912 55.000 0.37 0.00 46.04 3.51
909 1392 0.322546 AGGTTTTGGCTCGTCCATCC 60.323 55.000 0.37 4.61 46.04 3.51
911 1394 0.672401 GTTTTGGCTCGTCCATCCGA 60.672 55.000 0.37 0.00 46.04 4.55
913 1396 0.251916 TTTGGCTCGTCCATCCGATT 59.748 50.000 0.37 0.00 46.04 3.34
914 1397 0.251916 TTGGCTCGTCCATCCGATTT 59.748 50.000 0.37 0.00 46.04 2.17
915 1398 0.251916 TGGCTCGTCCATCCGATTTT 59.748 50.000 0.00 0.00 40.72 1.82
916 1399 0.938008 GGCTCGTCCATCCGATTTTC 59.062 55.000 0.00 0.00 36.08 2.29
917 1400 1.473434 GGCTCGTCCATCCGATTTTCT 60.473 52.381 0.00 0.00 36.08 2.52
918 1401 2.280628 GCTCGTCCATCCGATTTTCTT 58.719 47.619 0.00 0.00 36.08 2.52
919 1402 2.678336 GCTCGTCCATCCGATTTTCTTT 59.322 45.455 0.00 0.00 36.08 2.52
920 1403 3.485877 GCTCGTCCATCCGATTTTCTTTG 60.486 47.826 0.00 0.00 36.08 2.77
921 1404 3.006940 TCGTCCATCCGATTTTCTTTGG 58.993 45.455 0.00 0.00 30.63 3.28
922 1405 3.006940 CGTCCATCCGATTTTCTTTGGA 58.993 45.455 0.00 0.00 33.60 3.53
924 1407 4.437390 CGTCCATCCGATTTTCTTTGGAAG 60.437 45.833 0.00 0.00 35.19 3.46
925 1408 4.459337 GTCCATCCGATTTTCTTTGGAAGT 59.541 41.667 0.00 0.00 35.19 3.01
926 1409 4.458989 TCCATCCGATTTTCTTTGGAAGTG 59.541 41.667 0.00 0.00 32.80 3.16
927 1410 3.915437 TCCGATTTTCTTTGGAAGTGC 57.085 42.857 0.00 0.00 32.61 4.40
928 1411 3.218453 TCCGATTTTCTTTGGAAGTGCA 58.782 40.909 0.00 0.00 32.61 4.57
930 1413 4.082787 TCCGATTTTCTTTGGAAGTGCATC 60.083 41.667 0.00 0.00 32.61 3.91
933 1416 5.922544 CGATTTTCTTTGGAAGTGCATCTTT 59.077 36.000 0.00 0.00 36.40 2.52
934 1417 6.088616 CGATTTTCTTTGGAAGTGCATCTTTC 59.911 38.462 0.00 0.00 36.40 2.62
936 1419 3.476552 TCTTTGGAAGTGCATCTTTCGT 58.523 40.909 0.00 0.00 36.40 3.85
937 1420 3.250762 TCTTTGGAAGTGCATCTTTCGTG 59.749 43.478 0.00 0.00 36.40 4.35
942 1473 3.787676 TGCATCTTTCGTGGCGCG 61.788 61.111 15.42 15.42 43.01 6.86
951 1648 3.252484 CGTGGCGCGCCTAAGTAC 61.252 66.667 45.79 34.20 36.94 2.73
2116 2836 2.117423 TGACGGAGGAGCAGGTGA 59.883 61.111 0.00 0.00 0.00 4.02
2301 3028 1.001268 CTCGACTACAGGCGCATGTAT 60.001 52.381 32.13 22.20 35.21 2.29
2305 3032 1.202533 ACTACAGGCGCATGTATGACC 60.203 52.381 32.13 0.38 35.21 4.02
2385 3116 1.268625 CGGGACATCGGATTCATCGTA 59.731 52.381 0.00 0.00 0.00 3.43
2446 3184 4.069232 CAGCCGTCGCCTCCTGAA 62.069 66.667 0.00 0.00 34.57 3.02
2461 3201 0.167470 CTGAAAGGCGATGCACACTG 59.833 55.000 0.00 0.00 0.00 3.66
2462 3202 0.250252 TGAAAGGCGATGCACACTGA 60.250 50.000 0.00 0.00 0.00 3.41
2463 3203 1.089920 GAAAGGCGATGCACACTGAT 58.910 50.000 0.00 0.00 0.00 2.90
2464 3204 2.279741 GAAAGGCGATGCACACTGATA 58.720 47.619 0.00 0.00 0.00 2.15
2495 3236 3.251043 CGGCGAGCGCTCTTCTTC 61.251 66.667 32.88 16.62 41.60 2.87
2496 3237 2.183046 GGCGAGCGCTCTTCTTCT 59.817 61.111 32.88 0.00 41.60 2.85
2497 3238 1.876263 GGCGAGCGCTCTTCTTCTC 60.876 63.158 32.88 13.43 41.60 2.87
2506 3247 5.216648 AGCGCTCTTCTTCTCGATTAATAC 58.783 41.667 2.64 0.00 0.00 1.89
2519 3260 8.630278 TCTCGATTAATACAGAGTTTTGTAGC 57.370 34.615 12.12 0.00 37.01 3.58
2531 3272 1.272807 TTTGTAGCCCTCGTAAGCCT 58.727 50.000 0.00 0.00 37.18 4.58
2532 3273 1.272807 TTGTAGCCCTCGTAAGCCTT 58.727 50.000 0.00 0.00 37.18 4.35
2542 3283 3.139077 CTCGTAAGCCTTGTCAAAAGGT 58.861 45.455 0.00 0.00 39.60 3.50
2553 3294 6.877322 GCCTTGTCAAAAGGTGTAGAATACTA 59.123 38.462 0.00 0.00 39.00 1.82
2571 3312 9.726438 AGAATACTAGTTTTGCTATTGAGTTGT 57.274 29.630 0.00 0.00 0.00 3.32
2609 3350 6.540438 TTATATATCCGGGAACTAAGCCTG 57.460 41.667 0.00 0.00 0.00 4.85
2613 3593 1.153349 CGGGAACTAAGCCTGGCTC 60.153 63.158 23.61 9.11 38.25 4.70
2616 3596 0.746204 GGAACTAAGCCTGGCTCAGC 60.746 60.000 23.61 4.69 38.25 4.26
2628 3608 0.466124 GGCTCAGCCGGTTAGATTCT 59.534 55.000 0.00 0.00 39.62 2.40
2635 3615 1.202031 GCCGGTTAGATTCTTTGCGTG 60.202 52.381 1.90 0.00 0.00 5.34
2644 3624 7.534239 GGTTAGATTCTTTGCGTGTTTCTAAAG 59.466 37.037 0.00 0.00 0.00 1.85
2650 3630 3.619233 TGCGTGTTTCTAAAGGAAAGC 57.381 42.857 0.00 0.00 43.59 3.51
2667 3647 8.982091 AAGGAAAGCTTTTATATCTAACCCTC 57.018 34.615 14.05 0.00 0.00 4.30
2718 3698 7.605309 ACGAAAGAAATATTACTCCTTCCGTTT 59.395 33.333 0.00 0.00 0.00 3.60
2719 3699 8.114905 CGAAAGAAATATTACTCCTTCCGTTTC 58.885 37.037 0.00 0.00 0.00 2.78
2751 3731 9.429359 ACAAGTCTTTGTAGAGATTTCACTATG 57.571 33.333 0.00 0.00 45.45 2.23
2752 3732 8.877779 CAAGTCTTTGTAGAGATTTCACTATGG 58.122 37.037 0.00 0.00 0.00 2.74
2763 3743 9.179909 AGAGATTTCACTATGGACTATATACGG 57.820 37.037 0.00 0.00 0.00 4.02
2765 3745 9.179909 AGATTTCACTATGGACTATATACGGAG 57.820 37.037 0.00 0.00 0.00 4.63
2766 3746 6.754702 TTCACTATGGACTATATACGGAGC 57.245 41.667 0.00 0.00 0.00 4.70
2774 3754 5.989168 TGGACTATATACGGAGCAAAATGTG 59.011 40.000 0.00 0.00 0.00 3.21
2891 3872 0.107993 CAGACCGTGCACATGAGGAT 60.108 55.000 18.64 1.76 0.00 3.24
2935 3916 1.755179 ATCAGTTGATTTCCTGGCCG 58.245 50.000 0.00 0.00 0.00 6.13
2936 3917 0.400213 TCAGTTGATTTCCTGGCCGT 59.600 50.000 0.00 0.00 0.00 5.68
2937 3918 0.804989 CAGTTGATTTCCTGGCCGTC 59.195 55.000 0.00 0.00 0.00 4.79
2938 3919 0.322546 AGTTGATTTCCTGGCCGTCC 60.323 55.000 0.00 0.00 0.00 4.79
2939 3920 1.376683 TTGATTTCCTGGCCGTCCG 60.377 57.895 0.00 0.00 34.14 4.79
2940 3921 1.832719 TTGATTTCCTGGCCGTCCGA 61.833 55.000 0.00 0.00 34.14 4.55
2941 3922 1.146263 GATTTCCTGGCCGTCCGAT 59.854 57.895 0.00 0.00 34.14 4.18
2942 3923 0.880718 GATTTCCTGGCCGTCCGATC 60.881 60.000 0.00 0.00 34.14 3.69
2943 3924 1.338136 ATTTCCTGGCCGTCCGATCT 61.338 55.000 0.00 0.00 34.14 2.75
2944 3925 1.550130 TTTCCTGGCCGTCCGATCTT 61.550 55.000 0.00 0.00 34.14 2.40
2945 3926 1.550130 TTCCTGGCCGTCCGATCTTT 61.550 55.000 0.00 0.00 34.14 2.52
2946 3927 1.815421 CCTGGCCGTCCGATCTTTG 60.815 63.158 0.00 0.00 34.14 2.77
2947 3928 2.435938 TGGCCGTCCGATCTTTGC 60.436 61.111 0.00 0.00 34.14 3.68
2955 3936 0.895530 TCCGATCTTTGCTCGAACCT 59.104 50.000 0.00 0.00 38.38 3.50
2988 3969 2.548295 GGAGGCGGCGTGTTTTCAA 61.548 57.895 9.37 0.00 0.00 2.69
2993 3974 1.595328 GGCGGCGTGTTTTCAATTTTT 59.405 42.857 9.37 0.00 0.00 1.94
3046 4027 0.532862 ACGTGGTTTCTGGACTGCTG 60.533 55.000 0.00 0.00 0.00 4.41
3049 4030 1.073897 GGTTTCTGGACTGCTGCCT 59.926 57.895 0.00 0.00 0.00 4.75
3065 4046 1.228533 GCCTGTTTTTGCCAATGTGG 58.771 50.000 0.00 0.00 41.55 4.17
3105 4086 3.129462 TCCTGACGAGCAGTGATAGAAAG 59.871 47.826 0.00 0.00 43.33 2.62
3163 4144 0.244721 GGCAAACAACATGGAGGAGC 59.755 55.000 0.00 0.00 0.00 4.70
3174 4156 2.835431 GAGGAGCAGGGCGAGCTA 60.835 66.667 2.14 0.00 43.58 3.32
3176 4158 2.153547 GAGGAGCAGGGCGAGCTATC 62.154 65.000 2.14 1.39 43.58 2.08
3204 4186 2.503356 GAGCTGAGAAATGGGAGAAGGA 59.497 50.000 0.00 0.00 0.00 3.36
3215 4197 1.135960 GGAGAAGGAAGATGGAGGGG 58.864 60.000 0.00 0.00 0.00 4.79
3236 4218 1.034292 GGAAAGGAGGCCACTGATGC 61.034 60.000 5.01 0.00 0.00 3.91
3237 4219 0.034670 GAAAGGAGGCCACTGATGCT 60.035 55.000 5.01 0.00 0.00 3.79
3238 4220 0.034670 AAAGGAGGCCACTGATGCTC 60.035 55.000 5.01 0.00 0.00 4.26
3239 4221 0.913451 AAGGAGGCCACTGATGCTCT 60.913 55.000 5.01 0.00 0.00 4.09
3240 4222 1.145819 GGAGGCCACTGATGCTCTC 59.854 63.158 5.01 0.00 0.00 3.20
3241 4223 1.145819 GAGGCCACTGATGCTCTCC 59.854 63.158 5.01 0.00 0.00 3.71
3242 4224 2.191641 GGCCACTGATGCTCTCCC 59.808 66.667 0.00 0.00 0.00 4.30
3243 4225 2.673200 GGCCACTGATGCTCTCCCA 61.673 63.158 0.00 0.00 0.00 4.37
3244 4226 1.530771 GCCACTGATGCTCTCCCAT 59.469 57.895 0.00 0.00 0.00 4.00
3245 4227 0.534652 GCCACTGATGCTCTCCCATC 60.535 60.000 0.00 0.00 41.51 3.51
3246 4228 0.249784 CCACTGATGCTCTCCCATCG 60.250 60.000 0.00 0.00 43.52 3.84
3248 4230 1.370437 CTGATGCTCTCCCATCGGG 59.630 63.158 3.62 0.00 43.52 5.14
3249 4231 2.031768 GATGCTCTCCCATCGGGC 59.968 66.667 0.00 0.00 43.94 6.13
3250 4232 3.873026 GATGCTCTCCCATCGGGCG 62.873 68.421 0.00 0.00 43.94 6.13
3389 4371 3.226884 CGGTCTTGTTCCGGTCATT 57.773 52.632 0.00 0.00 43.68 2.57
3390 4372 1.519408 CGGTCTTGTTCCGGTCATTT 58.481 50.000 0.00 0.00 43.68 2.32
3391 4373 1.196808 CGGTCTTGTTCCGGTCATTTG 59.803 52.381 0.00 0.00 43.68 2.32
3392 4374 2.227194 GGTCTTGTTCCGGTCATTTGT 58.773 47.619 0.00 0.00 0.00 2.83
3393 4375 2.225727 GGTCTTGTTCCGGTCATTTGTC 59.774 50.000 0.00 0.00 0.00 3.18
3394 4376 3.139077 GTCTTGTTCCGGTCATTTGTCT 58.861 45.455 0.00 0.00 0.00 3.41
3395 4377 3.186613 GTCTTGTTCCGGTCATTTGTCTC 59.813 47.826 0.00 0.00 0.00 3.36
3396 4378 3.071023 TCTTGTTCCGGTCATTTGTCTCT 59.929 43.478 0.00 0.00 0.00 3.10
3397 4379 2.766313 TGTTCCGGTCATTTGTCTCTG 58.234 47.619 0.00 0.00 0.00 3.35
3398 4380 2.076863 GTTCCGGTCATTTGTCTCTGG 58.923 52.381 0.00 0.00 0.00 3.86
3399 4381 0.613260 TCCGGTCATTTGTCTCTGGG 59.387 55.000 0.00 0.00 0.00 4.45
3400 4382 0.613260 CCGGTCATTTGTCTCTGGGA 59.387 55.000 0.00 0.00 0.00 4.37
3401 4383 1.210478 CCGGTCATTTGTCTCTGGGAT 59.790 52.381 0.00 0.00 0.00 3.85
3402 4384 2.356125 CCGGTCATTTGTCTCTGGGATT 60.356 50.000 0.00 0.00 0.00 3.01
3403 4385 2.679837 CGGTCATTTGTCTCTGGGATTG 59.320 50.000 0.00 0.00 0.00 2.67
3404 4386 2.424956 GGTCATTTGTCTCTGGGATTGC 59.575 50.000 0.00 0.00 0.00 3.56
3405 4387 2.096496 GTCATTTGTCTCTGGGATTGCG 59.904 50.000 0.00 0.00 0.00 4.85
3406 4388 2.027285 TCATTTGTCTCTGGGATTGCGA 60.027 45.455 0.00 0.00 0.00 5.10
3407 4389 2.099141 TTTGTCTCTGGGATTGCGAG 57.901 50.000 0.00 0.00 0.00 5.03
3408 4390 0.250234 TTGTCTCTGGGATTGCGAGG 59.750 55.000 0.00 0.00 0.00 4.63
3409 4391 0.614697 TGTCTCTGGGATTGCGAGGA 60.615 55.000 0.00 0.00 0.00 3.71
3410 4392 0.537188 GTCTCTGGGATTGCGAGGAA 59.463 55.000 0.00 0.00 0.00 3.36
3411 4393 1.139853 GTCTCTGGGATTGCGAGGAAT 59.860 52.381 0.00 0.00 0.00 3.01
3412 4394 1.414181 TCTCTGGGATTGCGAGGAATC 59.586 52.381 8.54 8.54 0.00 2.52
3413 4395 0.104855 TCTGGGATTGCGAGGAATCG 59.895 55.000 10.42 0.00 33.75 3.34
3414 4396 0.882042 CTGGGATTGCGAGGAATCGG 60.882 60.000 10.42 1.71 33.75 4.18
3415 4397 1.598130 GGGATTGCGAGGAATCGGG 60.598 63.158 10.42 0.00 33.75 5.14
3416 4398 1.445942 GGATTGCGAGGAATCGGGA 59.554 57.895 10.42 0.00 33.75 5.14
3417 4399 0.035458 GGATTGCGAGGAATCGGGAT 59.965 55.000 10.42 0.00 33.75 3.85
3418 4400 1.543429 GGATTGCGAGGAATCGGGATT 60.543 52.381 10.42 0.00 33.75 3.01
3419 4401 1.801178 GATTGCGAGGAATCGGGATTC 59.199 52.381 11.99 11.99 44.82 2.52
3420 4402 0.830648 TTGCGAGGAATCGGGATTCT 59.169 50.000 18.05 7.08 44.90 2.40
3421 4403 0.104855 TGCGAGGAATCGGGATTCTG 59.895 55.000 18.05 11.07 44.90 3.02
3422 4404 1.224722 GCGAGGAATCGGGATTCTGC 61.225 60.000 18.05 15.57 44.90 4.26
3423 4405 0.104855 CGAGGAATCGGGATTCTGCA 59.895 55.000 18.05 0.00 44.90 4.41
3424 4406 1.270518 CGAGGAATCGGGATTCTGCAT 60.271 52.381 18.05 5.41 44.90 3.96
3425 4407 2.029020 CGAGGAATCGGGATTCTGCATA 60.029 50.000 18.05 0.00 44.90 3.14
3426 4408 3.554960 CGAGGAATCGGGATTCTGCATAA 60.555 47.826 18.05 0.00 44.90 1.90
3427 4409 4.583871 GAGGAATCGGGATTCTGCATAAT 58.416 43.478 18.05 0.00 44.90 1.28
3428 4410 4.583871 AGGAATCGGGATTCTGCATAATC 58.416 43.478 18.05 14.71 44.90 1.75
3435 4417 1.808945 GATTCTGCATAATCCTGCGGG 59.191 52.381 12.58 4.71 46.43 6.13
3436 4418 0.546122 TTCTGCATAATCCTGCGGGT 59.454 50.000 12.43 0.00 46.43 5.28
3437 4419 0.546122 TCTGCATAATCCTGCGGGTT 59.454 50.000 12.43 8.00 46.43 4.11
3438 4420 0.664761 CTGCATAATCCTGCGGGTTG 59.335 55.000 12.43 6.82 45.30 3.77
3439 4421 1.360192 GCATAATCCTGCGGGTTGC 59.640 57.895 12.43 12.86 46.70 4.17
3440 4422 1.103398 GCATAATCCTGCGGGTTGCT 61.103 55.000 12.43 0.00 46.63 3.91
3441 4423 0.664761 CATAATCCTGCGGGTTGCTG 59.335 55.000 12.43 2.09 46.63 4.41
3442 4424 0.255890 ATAATCCTGCGGGTTGCTGT 59.744 50.000 12.43 0.00 46.63 4.40
3443 4425 0.392461 TAATCCTGCGGGTTGCTGTC 60.392 55.000 12.43 0.00 46.63 3.51
3444 4426 2.129555 AATCCTGCGGGTTGCTGTCT 62.130 55.000 12.43 0.00 46.63 3.41
3445 4427 2.129555 ATCCTGCGGGTTGCTGTCTT 62.130 55.000 12.43 0.00 46.63 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
200 207 2.187946 GACTCCATGGCCGTCAGG 59.812 66.667 21.90 0.00 41.62 3.86
251 258 1.406887 CCACCTTTAGGGACATCACCG 60.407 57.143 0.10 0.00 40.27 4.94
352 364 2.660189 AACGTTACATAGGGACACCG 57.340 50.000 0.00 0.00 43.47 4.94
387 400 6.404623 CCATTCAGAATTTCAAATACGCCTCA 60.405 38.462 0.00 0.00 0.00 3.86
512 533 1.340017 CCATCGAACACCACCTTCCAT 60.340 52.381 0.00 0.00 0.00 3.41
513 534 0.036164 CCATCGAACACCACCTTCCA 59.964 55.000 0.00 0.00 0.00 3.53
514 535 0.323629 TCCATCGAACACCACCTTCC 59.676 55.000 0.00 0.00 0.00 3.46
515 536 2.093447 AGATCCATCGAACACCACCTTC 60.093 50.000 0.00 0.00 0.00 3.46
516 537 1.909302 AGATCCATCGAACACCACCTT 59.091 47.619 0.00 0.00 0.00 3.50
517 538 1.208052 CAGATCCATCGAACACCACCT 59.792 52.381 0.00 0.00 0.00 4.00
518 539 1.656652 CAGATCCATCGAACACCACC 58.343 55.000 0.00 0.00 0.00 4.61
519 540 1.009829 GCAGATCCATCGAACACCAC 58.990 55.000 0.00 0.00 0.00 4.16
520 541 0.107703 GGCAGATCCATCGAACACCA 60.108 55.000 0.00 0.00 34.01 4.17
521 542 0.815615 GGGCAGATCCATCGAACACC 60.816 60.000 0.00 0.00 36.21 4.16
522 543 1.154205 CGGGCAGATCCATCGAACAC 61.154 60.000 0.00 0.00 36.21 3.32
523 544 1.143838 CGGGCAGATCCATCGAACA 59.856 57.895 0.00 0.00 36.21 3.18
524 545 0.179084 TTCGGGCAGATCCATCGAAC 60.179 55.000 0.00 0.00 34.88 3.95
525 546 0.539518 TTTCGGGCAGATCCATCGAA 59.460 50.000 0.00 6.67 36.95 3.71
526 547 0.179084 GTTTCGGGCAGATCCATCGA 60.179 55.000 0.00 0.00 36.21 3.59
527 548 0.461870 TGTTTCGGGCAGATCCATCG 60.462 55.000 0.00 0.00 36.21 3.84
528 549 1.303309 CTGTTTCGGGCAGATCCATC 58.697 55.000 0.00 0.00 36.12 3.51
529 550 0.620556 ACTGTTTCGGGCAGATCCAT 59.379 50.000 8.36 0.00 37.40 3.41
530 551 0.321564 CACTGTTTCGGGCAGATCCA 60.322 55.000 8.36 0.00 37.40 3.41
531 552 0.321653 ACACTGTTTCGGGCAGATCC 60.322 55.000 8.36 0.00 37.40 3.36
532 553 2.271800 CTACACTGTTTCGGGCAGATC 58.728 52.381 8.36 0.00 37.40 2.75
533 554 1.066143 CCTACACTGTTTCGGGCAGAT 60.066 52.381 8.36 0.85 37.40 2.90
534 555 0.320374 CCTACACTGTTTCGGGCAGA 59.680 55.000 8.36 0.00 37.40 4.26
535 556 0.320374 TCCTACACTGTTTCGGGCAG 59.680 55.000 0.00 0.00 39.67 4.85
536 557 0.759959 TTCCTACACTGTTTCGGGCA 59.240 50.000 0.00 0.00 0.00 5.36
537 558 1.154197 GTTCCTACACTGTTTCGGGC 58.846 55.000 0.00 0.00 0.00 6.13
538 559 1.269936 ACGTTCCTACACTGTTTCGGG 60.270 52.381 0.00 0.00 0.00 5.14
539 560 2.144482 ACGTTCCTACACTGTTTCGG 57.856 50.000 0.00 0.00 0.00 4.30
540 561 5.640218 TTTTACGTTCCTACACTGTTTCG 57.360 39.130 0.00 0.00 0.00 3.46
541 562 6.849305 CACATTTTACGTTCCTACACTGTTTC 59.151 38.462 0.00 0.00 0.00 2.78
542 563 6.238538 CCACATTTTACGTTCCTACACTGTTT 60.239 38.462 0.00 0.00 0.00 2.83
543 564 5.237779 CCACATTTTACGTTCCTACACTGTT 59.762 40.000 0.00 0.00 0.00 3.16
544 565 4.753107 CCACATTTTACGTTCCTACACTGT 59.247 41.667 0.00 0.00 0.00 3.55
545 566 4.153475 CCCACATTTTACGTTCCTACACTG 59.847 45.833 0.00 0.00 0.00 3.66
546 567 4.320870 CCCACATTTTACGTTCCTACACT 58.679 43.478 0.00 0.00 0.00 3.55
547 568 3.437741 CCCCACATTTTACGTTCCTACAC 59.562 47.826 0.00 0.00 0.00 2.90
548 569 3.559597 CCCCCACATTTTACGTTCCTACA 60.560 47.826 0.00 0.00 0.00 2.74
549 570 3.011818 CCCCCACATTTTACGTTCCTAC 58.988 50.000 0.00 0.00 0.00 3.18
550 571 2.643801 ACCCCCACATTTTACGTTCCTA 59.356 45.455 0.00 0.00 0.00 2.94
551 572 1.426215 ACCCCCACATTTTACGTTCCT 59.574 47.619 0.00 0.00 0.00 3.36
552 573 1.913778 ACCCCCACATTTTACGTTCC 58.086 50.000 0.00 0.00 0.00 3.62
553 574 3.191162 GGTAACCCCCACATTTTACGTTC 59.809 47.826 0.00 0.00 0.00 3.95
554 575 3.156293 GGTAACCCCCACATTTTACGTT 58.844 45.455 0.00 0.00 0.00 3.99
555 576 2.376181 AGGTAACCCCCACATTTTACGT 59.624 45.455 0.00 0.00 37.17 3.57
556 577 3.076079 AGGTAACCCCCACATTTTACG 57.924 47.619 0.00 0.00 37.17 3.18
557 578 4.669700 AGAAGGTAACCCCCACATTTTAC 58.330 43.478 0.00 0.00 37.17 2.01
558 579 4.604490 AGAGAAGGTAACCCCCACATTTTA 59.396 41.667 0.00 0.00 37.17 1.52
559 580 3.401342 AGAGAAGGTAACCCCCACATTTT 59.599 43.478 0.00 0.00 37.17 1.82
560 581 2.993863 AGAGAAGGTAACCCCCACATTT 59.006 45.455 0.00 0.00 37.17 2.32
561 582 2.308866 CAGAGAAGGTAACCCCCACATT 59.691 50.000 0.00 0.00 37.17 2.71
562 583 1.916181 CAGAGAAGGTAACCCCCACAT 59.084 52.381 0.00 0.00 37.17 3.21
563 584 1.358152 CAGAGAAGGTAACCCCCACA 58.642 55.000 0.00 0.00 37.17 4.17
564 585 1.359168 ACAGAGAAGGTAACCCCCAC 58.641 55.000 0.00 0.00 37.17 4.61
565 586 1.702957 CAACAGAGAAGGTAACCCCCA 59.297 52.381 0.00 0.00 37.17 4.96
566 587 1.982958 TCAACAGAGAAGGTAACCCCC 59.017 52.381 0.00 0.00 37.17 5.40
567 588 3.782656 TTCAACAGAGAAGGTAACCCC 57.217 47.619 0.00 0.00 37.17 4.95
568 589 6.650427 AAATTTCAACAGAGAAGGTAACCC 57.350 37.500 0.00 0.00 37.17 4.11
569 590 7.712797 TCAAAATTTCAACAGAGAAGGTAACC 58.287 34.615 0.00 0.00 37.17 2.85
570 591 9.750125 ATTCAAAATTTCAACAGAGAAGGTAAC 57.250 29.630 0.00 0.00 0.00 2.50
571 592 9.748708 CATTCAAAATTTCAACAGAGAAGGTAA 57.251 29.630 0.00 0.00 0.00 2.85
572 593 8.359642 CCATTCAAAATTTCAACAGAGAAGGTA 58.640 33.333 0.00 0.00 0.00 3.08
573 594 7.212274 CCATTCAAAATTTCAACAGAGAAGGT 58.788 34.615 0.00 0.00 0.00 3.50
574 595 6.146673 GCCATTCAAAATTTCAACAGAGAAGG 59.853 38.462 0.00 0.00 0.00 3.46
575 596 6.702723 TGCCATTCAAAATTTCAACAGAGAAG 59.297 34.615 0.00 0.00 0.00 2.85
576 597 6.580788 TGCCATTCAAAATTTCAACAGAGAA 58.419 32.000 0.00 0.00 0.00 2.87
577 598 6.159299 TGCCATTCAAAATTTCAACAGAGA 57.841 33.333 0.00 0.00 0.00 3.10
578 599 6.847956 TTGCCATTCAAAATTTCAACAGAG 57.152 33.333 0.00 0.00 0.00 3.35
579 600 7.621428 TTTTGCCATTCAAAATTTCAACAGA 57.379 28.000 0.00 0.00 46.44 3.41
590 611 2.614520 TCTCGTCGTTTTGCCATTCAAA 59.385 40.909 0.00 0.00 42.50 2.69
591 612 2.214347 TCTCGTCGTTTTGCCATTCAA 58.786 42.857 0.00 0.00 0.00 2.69
592 613 1.872388 TCTCGTCGTTTTGCCATTCA 58.128 45.000 0.00 0.00 0.00 2.57
593 614 2.478894 TCTTCTCGTCGTTTTGCCATTC 59.521 45.455 0.00 0.00 0.00 2.67
594 615 2.489971 TCTTCTCGTCGTTTTGCCATT 58.510 42.857 0.00 0.00 0.00 3.16
595 616 2.163818 TCTTCTCGTCGTTTTGCCAT 57.836 45.000 0.00 0.00 0.00 4.40
596 617 1.798223 CATCTTCTCGTCGTTTTGCCA 59.202 47.619 0.00 0.00 0.00 4.92
597 618 1.464189 GCATCTTCTCGTCGTTTTGCC 60.464 52.381 0.00 0.00 0.00 4.52
598 619 1.194547 TGCATCTTCTCGTCGTTTTGC 59.805 47.619 0.00 0.00 0.00 3.68
599 620 3.123453 TCATGCATCTTCTCGTCGTTTTG 59.877 43.478 0.00 0.00 0.00 2.44
600 621 3.325870 TCATGCATCTTCTCGTCGTTTT 58.674 40.909 0.00 0.00 0.00 2.43
601 622 2.926200 CTCATGCATCTTCTCGTCGTTT 59.074 45.455 0.00 0.00 0.00 3.60
602 623 2.164422 TCTCATGCATCTTCTCGTCGTT 59.836 45.455 0.00 0.00 0.00 3.85
603 624 1.745653 TCTCATGCATCTTCTCGTCGT 59.254 47.619 0.00 0.00 0.00 4.34
604 625 2.481903 TCTCATGCATCTTCTCGTCG 57.518 50.000 0.00 0.00 0.00 5.12
605 626 2.979151 CGATCTCATGCATCTTCTCGTC 59.021 50.000 0.00 0.00 0.00 4.20
606 627 2.288091 CCGATCTCATGCATCTTCTCGT 60.288 50.000 0.00 0.00 0.00 4.18
607 628 2.326664 CCGATCTCATGCATCTTCTCG 58.673 52.381 0.00 3.76 0.00 4.04
608 629 2.067766 GCCGATCTCATGCATCTTCTC 58.932 52.381 0.00 0.00 0.00 2.87
609 630 1.604947 CGCCGATCTCATGCATCTTCT 60.605 52.381 0.00 0.00 0.00 2.85
610 631 0.788995 CGCCGATCTCATGCATCTTC 59.211 55.000 0.00 0.00 0.00 2.87
611 632 0.602106 CCGCCGATCTCATGCATCTT 60.602 55.000 0.00 0.00 0.00 2.40
612 633 1.005275 CCGCCGATCTCATGCATCT 60.005 57.895 0.00 0.00 0.00 2.90
613 634 2.675056 GCCGCCGATCTCATGCATC 61.675 63.158 0.00 0.00 0.00 3.91
614 635 2.667536 GCCGCCGATCTCATGCAT 60.668 61.111 0.00 0.00 0.00 3.96
615 636 2.946172 AATGCCGCCGATCTCATGCA 62.946 55.000 0.00 0.00 0.00 3.96
616 637 2.256591 AATGCCGCCGATCTCATGC 61.257 57.895 0.00 0.00 0.00 4.06
617 638 1.572941 CAATGCCGCCGATCTCATG 59.427 57.895 0.00 0.00 0.00 3.07
618 639 1.598962 CCAATGCCGCCGATCTCAT 60.599 57.895 0.00 0.00 0.00 2.90
619 640 1.681486 TACCAATGCCGCCGATCTCA 61.681 55.000 0.00 0.00 0.00 3.27
620 641 1.069090 TACCAATGCCGCCGATCTC 59.931 57.895 0.00 0.00 0.00 2.75
621 642 1.227556 GTACCAATGCCGCCGATCT 60.228 57.895 0.00 0.00 0.00 2.75
622 643 1.227556 AGTACCAATGCCGCCGATC 60.228 57.895 0.00 0.00 0.00 3.69
623 644 1.523711 CAGTACCAATGCCGCCGAT 60.524 57.895 0.00 0.00 0.00 4.18
624 645 2.125310 CAGTACCAATGCCGCCGA 60.125 61.111 0.00 0.00 0.00 5.54
625 646 3.202001 CCAGTACCAATGCCGCCG 61.202 66.667 0.00 0.00 0.00 6.46
626 647 0.963355 TTTCCAGTACCAATGCCGCC 60.963 55.000 0.00 0.00 0.00 6.13
627 648 0.170339 GTTTCCAGTACCAATGCCGC 59.830 55.000 0.00 0.00 0.00 6.53
628 649 1.529226 TGTTTCCAGTACCAATGCCG 58.471 50.000 0.00 0.00 0.00 5.69
629 650 2.166254 CCATGTTTCCAGTACCAATGCC 59.834 50.000 0.00 0.00 0.00 4.40
630 651 2.166254 CCCATGTTTCCAGTACCAATGC 59.834 50.000 0.00 0.00 0.00 3.56
631 652 3.443681 GTCCCATGTTTCCAGTACCAATG 59.556 47.826 0.00 0.00 0.00 2.82
632 653 3.333680 AGTCCCATGTTTCCAGTACCAAT 59.666 43.478 0.00 0.00 0.00 3.16
633 654 2.714250 AGTCCCATGTTTCCAGTACCAA 59.286 45.455 0.00 0.00 0.00 3.67
634 655 2.039746 CAGTCCCATGTTTCCAGTACCA 59.960 50.000 0.00 0.00 0.00 3.25
635 656 2.618045 CCAGTCCCATGTTTCCAGTACC 60.618 54.545 0.00 0.00 0.00 3.34
636 657 2.711542 CCAGTCCCATGTTTCCAGTAC 58.288 52.381 0.00 0.00 0.00 2.73
637 658 1.004277 GCCAGTCCCATGTTTCCAGTA 59.996 52.381 0.00 0.00 0.00 2.74
638 659 0.251341 GCCAGTCCCATGTTTCCAGT 60.251 55.000 0.00 0.00 0.00 4.00
639 660 0.038744 AGCCAGTCCCATGTTTCCAG 59.961 55.000 0.00 0.00 0.00 3.86
640 661 0.251297 CAGCCAGTCCCATGTTTCCA 60.251 55.000 0.00 0.00 0.00 3.53
641 662 0.038166 TCAGCCAGTCCCATGTTTCC 59.962 55.000 0.00 0.00 0.00 3.13
642 663 1.909700 TTCAGCCAGTCCCATGTTTC 58.090 50.000 0.00 0.00 0.00 2.78
643 664 2.242043 CTTTCAGCCAGTCCCATGTTT 58.758 47.619 0.00 0.00 0.00 2.83
644 665 1.548582 CCTTTCAGCCAGTCCCATGTT 60.549 52.381 0.00 0.00 0.00 2.71
645 666 0.038744 CCTTTCAGCCAGTCCCATGT 59.961 55.000 0.00 0.00 0.00 3.21
646 667 0.329261 TCCTTTCAGCCAGTCCCATG 59.671 55.000 0.00 0.00 0.00 3.66
647 668 0.622665 CTCCTTTCAGCCAGTCCCAT 59.377 55.000 0.00 0.00 0.00 4.00
648 669 1.492133 CCTCCTTTCAGCCAGTCCCA 61.492 60.000 0.00 0.00 0.00 4.37
649 670 1.301293 CCTCCTTTCAGCCAGTCCC 59.699 63.158 0.00 0.00 0.00 4.46
650 671 0.322008 CACCTCCTTTCAGCCAGTCC 60.322 60.000 0.00 0.00 0.00 3.85
651 672 0.957888 GCACCTCCTTTCAGCCAGTC 60.958 60.000 0.00 0.00 0.00 3.51
652 673 1.073897 GCACCTCCTTTCAGCCAGT 59.926 57.895 0.00 0.00 0.00 4.00
653 674 0.676151 GAGCACCTCCTTTCAGCCAG 60.676 60.000 0.00 0.00 0.00 4.85
654 675 1.376466 GAGCACCTCCTTTCAGCCA 59.624 57.895 0.00 0.00 0.00 4.75
655 676 1.743252 CGAGCACCTCCTTTCAGCC 60.743 63.158 0.00 0.00 0.00 4.85
656 677 0.107945 ATCGAGCACCTCCTTTCAGC 60.108 55.000 0.00 0.00 0.00 4.26
660 681 1.139853 GATCCATCGAGCACCTCCTTT 59.860 52.381 0.00 0.00 0.00 3.11
704 725 1.544724 CATGGTAACCCCCACACTTG 58.455 55.000 0.00 0.00 37.31 3.16
734 755 3.197790 CACGGCTGGGAGCGAATG 61.198 66.667 0.00 0.00 43.62 2.67
776 797 1.298859 AAGGAAACGAGATGTGGCGC 61.299 55.000 0.00 0.00 0.00 6.53
800 821 6.094186 GGAAGGAATCAAATGGTCTAGTGAAC 59.906 42.308 0.00 0.00 0.00 3.18
808 829 4.604156 AGAAGGGAAGGAATCAAATGGTC 58.396 43.478 0.00 0.00 0.00 4.02
811 835 4.864726 AGGAGAAGGGAAGGAATCAAATG 58.135 43.478 0.00 0.00 0.00 2.32
825 1230 1.557371 GGAGGAACAAGGAGGAGAAGG 59.443 57.143 0.00 0.00 0.00 3.46
875 1358 4.081309 CCAAAACCTCCCGTAAGTGAGATA 60.081 45.833 0.00 0.00 0.00 1.98
876 1359 3.307480 CCAAAACCTCCCGTAAGTGAGAT 60.307 47.826 0.00 0.00 0.00 2.75
882 1365 1.450025 GAGCCAAAACCTCCCGTAAG 58.550 55.000 0.00 0.00 0.00 2.34
901 1384 3.006940 TCCAAAGAAAATCGGATGGACG 58.993 45.455 0.00 0.00 32.28 4.79
908 1391 3.641437 TGCACTTCCAAAGAAAATCGG 57.359 42.857 0.00 0.00 0.00 4.18
909 1392 5.051891 AGATGCACTTCCAAAGAAAATCG 57.948 39.130 0.00 0.00 0.00 3.34
911 1394 5.922544 CGAAAGATGCACTTCCAAAGAAAAT 59.077 36.000 0.00 0.00 37.93 1.82
913 1396 4.338118 ACGAAAGATGCACTTCCAAAGAAA 59.662 37.500 0.00 0.00 37.93 2.52
914 1397 3.882888 ACGAAAGATGCACTTCCAAAGAA 59.117 39.130 0.00 0.00 37.93 2.52
915 1398 3.250762 CACGAAAGATGCACTTCCAAAGA 59.749 43.478 0.00 0.00 37.93 2.52
916 1399 3.558505 CACGAAAGATGCACTTCCAAAG 58.441 45.455 0.00 0.00 37.93 2.77
917 1400 2.293122 CCACGAAAGATGCACTTCCAAA 59.707 45.455 0.00 0.00 37.93 3.28
918 1401 1.879380 CCACGAAAGATGCACTTCCAA 59.121 47.619 0.00 0.00 37.93 3.53
919 1402 1.522668 CCACGAAAGATGCACTTCCA 58.477 50.000 0.00 0.00 37.93 3.53
920 1403 0.169009 GCCACGAAAGATGCACTTCC 59.831 55.000 0.00 0.00 37.93 3.46
921 1404 0.179215 CGCCACGAAAGATGCACTTC 60.179 55.000 0.00 0.00 37.93 3.01
922 1405 1.868997 CGCCACGAAAGATGCACTT 59.131 52.632 0.00 0.00 40.98 3.16
924 1407 2.202349 GCGCCACGAAAGATGCAC 60.202 61.111 0.00 0.00 0.00 4.57
951 1648 7.144722 TGCAACTACTACAATTGATCAAAGG 57.855 36.000 13.09 10.00 0.00 3.11
2301 3028 1.078918 CGGCTTCTGCATGAGGTCA 60.079 57.895 0.00 0.00 41.91 4.02
2305 3032 1.310933 AAAGCCGGCTTCTGCATGAG 61.311 55.000 40.13 0.00 41.91 2.90
2441 3179 0.957395 AGTGTGCATCGCCTTTCAGG 60.957 55.000 0.00 0.00 38.80 3.86
2442 3180 0.167470 CAGTGTGCATCGCCTTTCAG 59.833 55.000 0.00 0.00 0.00 3.02
2443 3181 0.250252 TCAGTGTGCATCGCCTTTCA 60.250 50.000 0.00 0.00 0.00 2.69
2444 3182 1.089920 ATCAGTGTGCATCGCCTTTC 58.910 50.000 0.00 0.00 0.00 2.62
2445 3183 2.009774 GTATCAGTGTGCATCGCCTTT 58.990 47.619 0.00 0.00 0.00 3.11
2446 3184 1.066215 TGTATCAGTGTGCATCGCCTT 60.066 47.619 0.00 0.00 0.00 4.35
2461 3201 2.426183 CGACGCGCGGCTATGTATC 61.426 63.158 35.26 18.10 36.03 2.24
2462 3202 2.428569 CGACGCGCGGCTATGTAT 60.429 61.111 35.26 10.03 36.03 2.29
2487 3228 9.796120 AAACTCTGTATTAATCGAGAAGAAGAG 57.204 33.333 13.27 12.75 34.87 2.85
2495 3236 7.042658 GGGCTACAAAACTCTGTATTAATCGAG 60.043 40.741 0.00 0.00 31.50 4.04
2496 3237 6.759827 GGGCTACAAAACTCTGTATTAATCGA 59.240 38.462 0.00 0.00 31.50 3.59
2497 3238 6.761714 AGGGCTACAAAACTCTGTATTAATCG 59.238 38.462 0.00 0.00 31.50 3.34
2506 3247 2.457366 ACGAGGGCTACAAAACTCTG 57.543 50.000 0.00 0.00 0.00 3.35
2519 3260 2.178912 TTTGACAAGGCTTACGAGGG 57.821 50.000 0.00 0.00 0.00 4.30
2531 3272 9.841295 AAACTAGTATTCTACACCTTTTGACAA 57.159 29.630 0.00 0.00 0.00 3.18
2532 3273 9.841295 AAAACTAGTATTCTACACCTTTTGACA 57.159 29.630 0.00 0.00 0.00 3.58
2580 3321 9.315525 GCTTAGTTCCCGGATATATAAAGAATC 57.684 37.037 0.73 0.00 0.00 2.52
2581 3322 8.265764 GGCTTAGTTCCCGGATATATAAAGAAT 58.734 37.037 0.73 0.00 0.00 2.40
2582 3323 7.456902 AGGCTTAGTTCCCGGATATATAAAGAA 59.543 37.037 0.73 0.00 0.00 2.52
2583 3324 6.958192 AGGCTTAGTTCCCGGATATATAAAGA 59.042 38.462 0.73 0.00 0.00 2.52
2584 3325 7.042335 CAGGCTTAGTTCCCGGATATATAAAG 58.958 42.308 0.73 0.00 0.00 1.85
2585 3326 6.070424 CCAGGCTTAGTTCCCGGATATATAAA 60.070 42.308 0.73 0.00 0.00 1.40
2586 3327 5.424252 CCAGGCTTAGTTCCCGGATATATAA 59.576 44.000 0.73 0.00 0.00 0.98
2587 3328 4.960469 CCAGGCTTAGTTCCCGGATATATA 59.040 45.833 0.73 0.00 0.00 0.86
2588 3329 3.775316 CCAGGCTTAGTTCCCGGATATAT 59.225 47.826 0.73 0.00 0.00 0.86
2609 3350 0.466124 AGAATCTAACCGGCTGAGCC 59.534 55.000 14.89 14.89 46.75 4.70
2613 3593 1.062587 CGCAAAGAATCTAACCGGCTG 59.937 52.381 0.00 0.00 0.00 4.85
2616 3596 2.073816 ACACGCAAAGAATCTAACCGG 58.926 47.619 0.00 0.00 0.00 5.28
2617 3597 3.806316 AACACGCAAAGAATCTAACCG 57.194 42.857 0.00 0.00 0.00 4.44
2628 3608 4.097286 AGCTTTCCTTTAGAAACACGCAAA 59.903 37.500 0.00 0.00 39.60 3.68
2644 3624 8.841300 CAAGAGGGTTAGATATAAAAGCTTTCC 58.159 37.037 13.10 5.71 0.00 3.13
2672 3652 9.398170 CTTTCGTATTTGAATTTCAACACAGAT 57.602 29.630 11.30 5.15 35.89 2.90
2674 3654 8.781067 TCTTTCGTATTTGAATTTCAACACAG 57.219 30.769 11.30 8.95 35.89 3.66
2710 3690 8.557029 ACAAAGACTTGTATTTAGAAACGGAAG 58.443 33.333 0.00 0.00 44.14 3.46
2713 3693 9.199982 TCTACAAAGACTTGTATTTAGAAACGG 57.800 33.333 0.00 0.00 44.95 4.44
2726 3706 8.877779 CCATAGTGAAATCTCTACAAAGACTTG 58.122 37.037 0.00 0.00 38.61 3.16
2740 3720 7.916450 GCTCCGTATATAGTCCATAGTGAAATC 59.084 40.741 0.00 0.00 0.00 2.17
2742 3722 6.717997 TGCTCCGTATATAGTCCATAGTGAAA 59.282 38.462 0.00 0.00 0.00 2.69
2751 3731 5.989777 ACACATTTTGCTCCGTATATAGTCC 59.010 40.000 0.00 0.00 0.00 3.85
2752 3732 6.700081 TCACACATTTTGCTCCGTATATAGTC 59.300 38.462 0.00 0.00 0.00 2.59
2757 3737 6.112734 AGATTCACACATTTTGCTCCGTATA 58.887 36.000 0.00 0.00 0.00 1.47
2774 3754 8.430801 AGATGCATTTTAGAGTGTAGATTCAC 57.569 34.615 0.00 0.00 38.46 3.18
2859 3840 2.623416 CACGGTCTGATATACTGCCTCA 59.377 50.000 0.00 0.00 0.00 3.86
2864 3845 3.436700 TGTGCACGGTCTGATATACTG 57.563 47.619 13.13 0.00 0.00 2.74
2872 3853 0.107993 ATCCTCATGTGCACGGTCTG 60.108 55.000 13.13 7.23 0.00 3.51
2915 3896 2.094675 CGGCCAGGAAATCAACTGATT 58.905 47.619 2.24 0.00 45.91 2.57
2916 3897 1.004745 ACGGCCAGGAAATCAACTGAT 59.995 47.619 2.24 0.00 36.86 2.90
2917 3898 0.400213 ACGGCCAGGAAATCAACTGA 59.600 50.000 2.24 0.00 36.86 3.41
2918 3899 0.804989 GACGGCCAGGAAATCAACTG 59.195 55.000 2.24 0.00 34.54 3.16
2919 3900 0.322546 GGACGGCCAGGAAATCAACT 60.323 55.000 0.00 0.00 0.00 3.16
2920 3901 1.644786 CGGACGGCCAGGAAATCAAC 61.645 60.000 8.76 0.00 0.00 3.18
2921 3902 1.376683 CGGACGGCCAGGAAATCAA 60.377 57.895 8.76 0.00 0.00 2.57
2922 3903 1.622607 ATCGGACGGCCAGGAAATCA 61.623 55.000 8.76 0.00 0.00 2.57
2923 3904 0.880718 GATCGGACGGCCAGGAAATC 60.881 60.000 8.76 0.00 0.00 2.17
2924 3905 1.146263 GATCGGACGGCCAGGAAAT 59.854 57.895 8.76 0.00 0.00 2.17
2925 3906 1.550130 AAGATCGGACGGCCAGGAAA 61.550 55.000 8.76 0.00 0.00 3.13
2926 3907 1.550130 AAAGATCGGACGGCCAGGAA 61.550 55.000 8.76 0.00 0.00 3.36
2927 3908 1.987855 AAAGATCGGACGGCCAGGA 60.988 57.895 8.76 0.00 0.00 3.86
2928 3909 1.815421 CAAAGATCGGACGGCCAGG 60.815 63.158 8.76 0.00 0.00 4.45
2929 3910 2.464459 GCAAAGATCGGACGGCCAG 61.464 63.158 8.76 0.00 0.00 4.85
2930 3911 2.435938 GCAAAGATCGGACGGCCA 60.436 61.111 8.76 0.00 0.00 5.36
2931 3912 2.125106 AGCAAAGATCGGACGGCC 60.125 61.111 0.00 0.00 0.00 6.13
2932 3913 2.517450 CGAGCAAAGATCGGACGGC 61.517 63.158 0.00 0.00 37.82 5.68
2933 3914 0.457853 TTCGAGCAAAGATCGGACGG 60.458 55.000 4.79 0.00 41.96 4.79
2934 3915 0.640768 GTTCGAGCAAAGATCGGACG 59.359 55.000 4.79 0.00 40.06 4.79
2936 3917 0.895530 AGGTTCGAGCAAAGATCGGA 59.104 50.000 4.79 0.00 41.96 4.55
2937 3918 1.281899 GAGGTTCGAGCAAAGATCGG 58.718 55.000 4.79 0.00 41.96 4.18
2938 3919 1.996292 TGAGGTTCGAGCAAAGATCG 58.004 50.000 0.53 0.00 43.08 3.69
2939 3920 4.505922 CACTATGAGGTTCGAGCAAAGATC 59.494 45.833 0.53 0.00 0.00 2.75
2940 3921 4.437239 CACTATGAGGTTCGAGCAAAGAT 58.563 43.478 0.53 0.00 0.00 2.40
2941 3922 3.849911 CACTATGAGGTTCGAGCAAAGA 58.150 45.455 0.53 0.00 0.00 2.52
2942 3923 2.349886 GCACTATGAGGTTCGAGCAAAG 59.650 50.000 0.53 0.00 0.00 2.77
2943 3924 2.346803 GCACTATGAGGTTCGAGCAAA 58.653 47.619 0.53 0.00 0.00 3.68
2944 3925 1.405526 GGCACTATGAGGTTCGAGCAA 60.406 52.381 0.53 0.00 0.00 3.91
2945 3926 0.175760 GGCACTATGAGGTTCGAGCA 59.824 55.000 0.53 0.00 0.00 4.26
2946 3927 0.530870 GGGCACTATGAGGTTCGAGC 60.531 60.000 0.00 0.00 0.00 5.03
2947 3928 0.249073 CGGGCACTATGAGGTTCGAG 60.249 60.000 0.00 0.00 0.00 4.04
2955 3936 1.613317 CCTCCACACGGGCACTATGA 61.613 60.000 0.00 0.00 36.21 2.15
2993 3974 4.714308 ACCATGACCCAAGAAAAACTCAAA 59.286 37.500 0.00 0.00 0.00 2.69
2997 3978 5.692115 AAAACCATGACCCAAGAAAAACT 57.308 34.783 0.00 0.00 0.00 2.66
3023 4004 0.393077 AGTCCAGAAACCACGTGGAG 59.607 55.000 40.21 21.76 41.11 3.86
3046 4027 1.228533 CCACATTGGCAAAAACAGGC 58.771 50.000 3.01 0.00 0.00 4.85
3123 4104 2.366167 AGCTCGCCTCCCTCCATT 60.366 61.111 0.00 0.00 0.00 3.16
3163 4144 2.355599 CGCTGATAGCTCGCCCTG 60.356 66.667 0.00 0.00 39.60 4.45
3182 4164 2.421248 CCTTCTCCCATTTCTCAGCTCC 60.421 54.545 0.00 0.00 0.00 4.70
3186 4168 4.833478 TCTTCCTTCTCCCATTTCTCAG 57.167 45.455 0.00 0.00 0.00 3.35
3191 4173 3.203934 CCTCCATCTTCCTTCTCCCATTT 59.796 47.826 0.00 0.00 0.00 2.32
3204 4186 1.002857 CCTTTCCACCCCTCCATCTT 58.997 55.000 0.00 0.00 0.00 2.40
3253 4235 4.498520 ACCATCGCTCGCTCGTGG 62.499 66.667 12.30 12.30 36.99 4.94
3254 4236 2.951745 GACCATCGCTCGCTCGTG 60.952 66.667 0.00 0.00 0.00 4.35
3255 4237 4.194720 GGACCATCGCTCGCTCGT 62.195 66.667 0.00 0.00 0.00 4.18
3256 4238 4.933064 GGGACCATCGCTCGCTCG 62.933 72.222 0.00 0.00 0.00 5.03
3257 4239 3.532155 AGGGACCATCGCTCGCTC 61.532 66.667 0.00 0.00 34.27 5.03
3258 4240 3.842923 CAGGGACCATCGCTCGCT 61.843 66.667 0.00 0.00 37.59 4.93
3259 4241 4.899239 CCAGGGACCATCGCTCGC 62.899 72.222 0.00 0.00 37.59 5.03
3260 4242 4.227134 CCCAGGGACCATCGCTCG 62.227 72.222 0.00 0.00 37.59 5.03
3330 4312 2.124778 GAGCAGGCTGGGAAGAGC 60.125 66.667 17.64 0.00 38.34 4.09
3384 4366 2.096496 CGCAATCCCAGAGACAAATGAC 59.904 50.000 0.00 0.00 0.00 3.06
3385 4367 2.027285 TCGCAATCCCAGAGACAAATGA 60.027 45.455 0.00 0.00 0.00 2.57
3386 4368 2.353889 CTCGCAATCCCAGAGACAAATG 59.646 50.000 0.00 0.00 34.13 2.32
3387 4369 2.636830 CTCGCAATCCCAGAGACAAAT 58.363 47.619 0.00 0.00 34.13 2.32
3388 4370 1.339055 CCTCGCAATCCCAGAGACAAA 60.339 52.381 0.00 0.00 34.13 2.83
3389 4371 0.250234 CCTCGCAATCCCAGAGACAA 59.750 55.000 0.00 0.00 34.13 3.18
3390 4372 0.614697 TCCTCGCAATCCCAGAGACA 60.615 55.000 0.00 0.00 34.13 3.41
3391 4373 0.537188 TTCCTCGCAATCCCAGAGAC 59.463 55.000 0.00 0.00 34.13 3.36
3392 4374 1.414181 GATTCCTCGCAATCCCAGAGA 59.586 52.381 0.00 0.00 34.13 3.10
3393 4375 1.871408 CGATTCCTCGCAATCCCAGAG 60.871 57.143 0.00 0.00 38.20 3.35
3394 4376 0.104855 CGATTCCTCGCAATCCCAGA 59.895 55.000 0.00 0.00 38.20 3.86
3395 4377 0.882042 CCGATTCCTCGCAATCCCAG 60.882 60.000 0.00 0.00 43.66 4.45
3396 4378 1.146041 CCGATTCCTCGCAATCCCA 59.854 57.895 0.00 0.00 43.66 4.37
3397 4379 1.598130 CCCGATTCCTCGCAATCCC 60.598 63.158 0.00 0.00 43.66 3.85
3398 4380 0.035458 ATCCCGATTCCTCGCAATCC 59.965 55.000 0.00 0.00 43.66 3.01
3399 4381 1.801178 GAATCCCGATTCCTCGCAATC 59.199 52.381 6.20 0.00 43.66 2.67
3400 4382 1.417890 AGAATCCCGATTCCTCGCAAT 59.582 47.619 12.72 0.00 46.28 3.56
3401 4383 0.830648 AGAATCCCGATTCCTCGCAA 59.169 50.000 12.72 0.00 46.28 4.85
3402 4384 0.104855 CAGAATCCCGATTCCTCGCA 59.895 55.000 12.72 0.00 46.28 5.10
3403 4385 1.224722 GCAGAATCCCGATTCCTCGC 61.225 60.000 12.72 9.98 46.28 5.03
3404 4386 0.104855 TGCAGAATCCCGATTCCTCG 59.895 55.000 12.72 4.78 46.28 4.63
3405 4387 2.557920 ATGCAGAATCCCGATTCCTC 57.442 50.000 12.72 6.68 46.28 3.71
3406 4388 4.566488 GGATTATGCAGAATCCCGATTCCT 60.566 45.833 33.63 0.00 46.38 3.36
3407 4389 3.691609 GGATTATGCAGAATCCCGATTCC 59.308 47.826 33.63 15.30 46.38 3.01
3408 4390 4.954092 GGATTATGCAGAATCCCGATTC 57.046 45.455 33.63 14.14 46.38 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.