Multiple sequence alignment - TraesCS4D01G074800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G074800 chr4D 100.000 2486 0 0 1 2486 49370956 49368471 0.000000e+00 4591.0
1 TraesCS4D01G074800 chr4D 100.000 1909 0 0 2760 4668 49368197 49366289 0.000000e+00 3526.0
2 TraesCS4D01G074800 chr4D 97.756 624 14 0 2760 3383 496383916 496384539 0.000000e+00 1075.0
3 TraesCS4D01G074800 chr4D 89.528 487 37 10 4193 4668 49419529 49420012 5.170000e-169 604.0
4 TraesCS4D01G074800 chr4D 94.517 383 16 3 2105 2483 496383036 496383417 1.870000e-163 586.0
5 TraesCS4D01G074800 chr4D 75.618 283 55 10 4201 4476 69946016 69946291 1.360000e-25 128.0
6 TraesCS4D01G074800 chr4B 92.112 1686 59 21 470 2107 72903181 72901522 0.000000e+00 2309.0
7 TraesCS4D01G074800 chr4B 94.479 634 30 3 3385 4018 72901528 72900900 0.000000e+00 972.0
8 TraesCS4D01G074800 chr4B 91.884 345 20 2 103 447 72903686 72903350 4.230000e-130 475.0
9 TraesCS4D01G074800 chr4B 94.667 150 6 1 4193 4342 72899596 72899449 1.010000e-56 231.0
10 TraesCS4D01G074800 chr4B 82.158 241 19 12 3984 4202 72927864 72928102 7.980000e-43 185.0
11 TraesCS4D01G074800 chr4A 92.174 1610 79 22 525 2107 547980798 547979209 0.000000e+00 2231.0
12 TraesCS4D01G074800 chr4A 93.456 489 24 3 3385 3871 547979215 547978733 0.000000e+00 719.0
13 TraesCS4D01G074800 chr4A 88.501 487 41 4 4193 4665 547987991 547988476 4.050000e-160 575.0
14 TraesCS4D01G074800 chr4A 74.324 296 54 17 4203 4493 485689882 485689604 6.390000e-19 106.0
15 TraesCS4D01G074800 chr4A 82.432 74 11 1 447 518 547981568 547981495 3.900000e-06 63.9
16 TraesCS4D01G074800 chr1D 85.243 637 78 9 2760 3384 26451716 26452348 3.940000e-180 641.0
17 TraesCS4D01G074800 chr1D 91.451 386 22 5 2111 2486 18209518 18209134 1.930000e-143 520.0
18 TraesCS4D01G074800 chr1D 94.410 161 4 4 2778 2937 18208929 18208773 4.670000e-60 243.0
19 TraesCS4D01G074800 chr1D 81.275 251 38 7 2111 2355 19039344 19039591 1.330000e-45 195.0
20 TraesCS4D01G074800 chr2B 85.041 488 51 11 2912 3383 747817320 747817801 1.180000e-130 477.0
21 TraesCS4D01G074800 chr2B 89.189 185 17 2 2111 2292 49651888 49652072 1.310000e-55 228.0
22 TraesCS4D01G074800 chr1A 80.795 302 54 4 3086 3385 570235406 570235705 2.810000e-57 233.0
23 TraesCS4D01G074800 chr1A 79.412 238 42 5 2108 2339 514533193 514533429 1.340000e-35 161.0
24 TraesCS4D01G074800 chr7D 81.469 286 49 3 3100 3383 26811120 26810837 1.010000e-56 231.0
25 TraesCS4D01G074800 chr7D 87.166 187 21 2 2111 2294 220992259 220992073 4.730000e-50 209.0
26 TraesCS4D01G074800 chr7D 80.769 234 37 7 2111 2338 117858483 117858714 4.800000e-40 176.0
27 TraesCS4D01G074800 chr7D 77.816 293 58 5 3100 3388 117859362 117859651 1.730000e-39 174.0
28 TraesCS4D01G074800 chr3D 88.235 187 19 2 2111 2294 41263586 41263400 2.190000e-53 220.0
29 TraesCS4D01G074800 chr3D 82.243 214 38 0 3175 3388 567294920 567295133 7.980000e-43 185.0
30 TraesCS4D01G074800 chr3D 80.488 205 37 2 1558 1759 520824703 520824907 2.250000e-33 154.0
31 TraesCS4D01G074800 chr3D 80.952 168 26 4 1561 1725 454980986 454980822 1.360000e-25 128.0
32 TraesCS4D01G074800 chr3D 80.606 165 26 4 1558 1719 454219686 454219847 6.340000e-24 122.0
33 TraesCS4D01G074800 chr7A 88.108 185 19 2 2111 2292 323481398 323481214 2.830000e-52 217.0
34 TraesCS4D01G074800 chr5D 87.568 185 20 2 2111 2292 483516516 483516700 1.320000e-50 211.0
35 TraesCS4D01G074800 chr7B 87.166 187 21 2 2111 2294 691193510 691193324 4.730000e-50 209.0
36 TraesCS4D01G074800 chr7B 82.488 217 32 4 3171 3384 691193300 691193513 7.980000e-43 185.0
37 TraesCS4D01G074800 chr6D 80.000 285 56 1 3100 3383 418731051 418730767 4.730000e-50 209.0
38 TraesCS4D01G074800 chr1B 78.146 302 60 5 3084 3383 16796126 16795829 2.220000e-43 187.0
39 TraesCS4D01G074800 chr1B 76.357 258 46 9 2111 2361 16797343 16797094 1.760000e-24 124.0
40 TraesCS4D01G074800 chr3A 80.097 206 36 4 1558 1759 656135299 656135503 1.050000e-31 148.0
41 TraesCS4D01G074800 chr3A 81.212 165 25 4 1558 1719 596357567 596357728 1.360000e-25 128.0
42 TraesCS4D01G074800 chr3A 80.952 168 26 4 1561 1725 597234359 597234195 1.360000e-25 128.0
43 TraesCS4D01G074800 chr3B 81.366 161 24 4 1561 1718 597840721 597840564 4.900000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G074800 chr4D 49366289 49370956 4667 True 4058.500000 4591 100.0000 1 4668 2 chr4D.!!$R1 4667
1 TraesCS4D01G074800 chr4D 496383036 496384539 1503 False 830.500000 1075 96.1365 2105 3383 2 chr4D.!!$F3 1278
2 TraesCS4D01G074800 chr4B 72899449 72903686 4237 True 996.750000 2309 93.2855 103 4342 4 chr4B.!!$R1 4239
3 TraesCS4D01G074800 chr4A 547978733 547981568 2835 True 1004.633333 2231 89.3540 447 3871 3 chr4A.!!$R2 3424
4 TraesCS4D01G074800 chr1D 26451716 26452348 632 False 641.000000 641 85.2430 2760 3384 1 chr1D.!!$F2 624
5 TraesCS4D01G074800 chr1D 18208773 18209518 745 True 381.500000 520 92.9305 2111 2937 2 chr1D.!!$R1 826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
700 1537 0.322008 GTGCTCTGCTAGGCCAGTTT 60.322 55.0 5.01 0.0 34.47 2.66 F
904 1772 0.322546 GACCACCCTTGTAAGCCCAG 60.323 60.0 0.00 0.0 0.00 4.45 F
2101 3003 0.033920 TGCTGCGTGACAACTCTGAT 59.966 50.0 0.00 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2087 2989 1.000843 TGGGTGATCAGAGTTGTCACG 59.999 52.381 0.0 0.0 42.34 4.35 R
2103 3005 2.363306 TTCTGCAATTCACACTGGGT 57.637 45.000 0.0 0.0 0.00 4.51 R
4053 5326 0.549469 ACTCTGACCGTTTTGGGGTT 59.451 50.000 0.0 0.0 44.64 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.127693 CAATATTTGGTGAAAACCGGTGA 57.872 39.130 8.52 0.00 0.00 4.02
23 24 5.533482 CAATATTTGGTGAAAACCGGTGAA 58.467 37.500 8.52 0.00 0.00 3.18
24 25 5.793030 ATATTTGGTGAAAACCGGTGAAA 57.207 34.783 8.52 0.00 0.00 2.69
25 26 3.955650 TTTGGTGAAAACCGGTGAAAA 57.044 38.095 8.52 0.00 0.00 2.29
26 27 3.955650 TTGGTGAAAACCGGTGAAAAA 57.044 38.095 8.52 0.00 0.00 1.94
27 28 3.233684 TGGTGAAAACCGGTGAAAAAC 57.766 42.857 8.52 3.26 0.00 2.43
28 29 2.561419 TGGTGAAAACCGGTGAAAAACA 59.439 40.909 8.52 0.04 0.00 2.83
29 30 3.006537 TGGTGAAAACCGGTGAAAAACAA 59.993 39.130 8.52 0.00 0.00 2.83
30 31 3.615056 GGTGAAAACCGGTGAAAAACAAG 59.385 43.478 8.52 0.00 0.00 3.16
31 32 3.061563 GTGAAAACCGGTGAAAAACAAGC 59.938 43.478 8.52 0.00 0.00 4.01
32 33 1.915952 AAACCGGTGAAAAACAAGCG 58.084 45.000 8.52 0.00 37.06 4.68
33 34 1.096416 AACCGGTGAAAAACAAGCGA 58.904 45.000 8.52 0.00 39.55 4.93
34 35 1.314730 ACCGGTGAAAAACAAGCGAT 58.685 45.000 6.12 0.00 39.55 4.58
35 36 1.001815 ACCGGTGAAAAACAAGCGATG 60.002 47.619 6.12 0.00 39.55 3.84
36 37 1.001815 CCGGTGAAAAACAAGCGATGT 60.002 47.619 0.00 0.00 46.82 3.06
48 49 4.035017 ACAAGCGATGTTTTGAAGTTTCG 58.965 39.130 0.00 0.00 40.06 3.46
49 50 4.201871 ACAAGCGATGTTTTGAAGTTTCGA 60.202 37.500 0.00 0.00 40.06 3.71
50 51 4.545823 AGCGATGTTTTGAAGTTTCGAA 57.454 36.364 0.00 0.00 0.00 3.71
51 52 4.915704 AGCGATGTTTTGAAGTTTCGAAA 58.084 34.783 6.47 6.47 38.03 3.46
52 53 5.336744 AGCGATGTTTTGAAGTTTCGAAAA 58.663 33.333 13.10 0.00 41.01 2.29
53 54 5.802956 AGCGATGTTTTGAAGTTTCGAAAAA 59.197 32.000 13.10 0.00 41.01 1.94
91 92 7.989826 ACATGAGATGTTAAAAGGACTATTGC 58.010 34.615 0.00 0.00 41.63 3.56
92 93 7.067494 ACATGAGATGTTAAAAGGACTATTGCC 59.933 37.037 0.00 0.00 41.63 4.52
93 94 6.480763 TGAGATGTTAAAAGGACTATTGCCA 58.519 36.000 0.00 0.00 0.00 4.92
94 95 7.118723 TGAGATGTTAAAAGGACTATTGCCAT 58.881 34.615 0.00 0.00 0.00 4.40
95 96 7.067372 TGAGATGTTAAAAGGACTATTGCCATG 59.933 37.037 0.00 0.00 0.00 3.66
96 97 5.323371 TGTTAAAAGGACTATTGCCATGC 57.677 39.130 0.00 0.00 0.00 4.06
97 98 4.769488 TGTTAAAAGGACTATTGCCATGCA 59.231 37.500 0.00 0.00 36.47 3.96
144 145 5.578336 TGTTCTTAAGCATCATGACTTCTCG 59.422 40.000 0.00 0.00 0.00 4.04
152 153 4.683781 GCATCATGACTTCTCGTTATCCTC 59.316 45.833 0.00 0.00 0.00 3.71
165 166 7.473366 TCTCGTTATCCTCATAATATCTTCGC 58.527 38.462 0.00 0.00 0.00 4.70
171 172 5.325239 TCCTCATAATATCTTCGCTCCTCA 58.675 41.667 0.00 0.00 0.00 3.86
182 183 2.151202 TCGCTCCTCATTGAAACCAAC 58.849 47.619 0.00 0.00 0.00 3.77
253 254 1.519455 GGTCTTCGTGAGGATGCGG 60.519 63.158 0.00 0.00 0.00 5.69
258 259 4.592192 CGTGAGGATGCGGCCGAT 62.592 66.667 33.48 19.72 0.00 4.18
274 275 4.304110 GGCCGATGAGATTATACGAACAA 58.696 43.478 0.00 0.00 0.00 2.83
289 290 3.507233 ACGAACAACATGAGGAAATGCAT 59.493 39.130 0.00 0.00 0.00 3.96
302 303 3.429410 GGAAATGCATTGTAAGCACCCTC 60.429 47.826 13.82 2.27 45.95 4.30
305 306 1.305219 GCATTGTAAGCACCCTCGCA 61.305 55.000 0.00 0.00 0.00 5.10
306 307 1.164411 CATTGTAAGCACCCTCGCAA 58.836 50.000 0.00 0.00 0.00 4.85
307 308 1.539388 CATTGTAAGCACCCTCGCAAA 59.461 47.619 0.00 0.00 0.00 3.68
308 309 1.681538 TTGTAAGCACCCTCGCAAAA 58.318 45.000 0.00 0.00 0.00 2.44
309 310 1.681538 TGTAAGCACCCTCGCAAAAA 58.318 45.000 0.00 0.00 0.00 1.94
354 355 2.358737 GCCCGAACAGGTCCACAG 60.359 66.667 0.00 0.00 38.74 3.66
422 423 3.777925 GCAACTGCGCGACGATGT 61.778 61.111 12.10 0.00 0.00 3.06
452 479 2.662535 TTGGTGATAGGGGATGCATG 57.337 50.000 2.46 0.00 0.00 4.06
463 490 0.743097 GGATGCATGTGCTCTTTCCC 59.257 55.000 2.46 0.00 42.66 3.97
467 494 1.648467 GCATGTGCTCTTTCCCGACC 61.648 60.000 0.00 0.00 38.21 4.79
468 495 1.079127 ATGTGCTCTTTCCCGACCG 60.079 57.895 0.00 0.00 0.00 4.79
509 656 3.250762 CGTCTCATCTCCAAAGCAAACAA 59.749 43.478 0.00 0.00 0.00 2.83
595 1432 6.382570 TCCTTTTCCTTCCATGAACAGAAAAA 59.617 34.615 0.00 0.00 32.92 1.94
700 1537 0.322008 GTGCTCTGCTAGGCCAGTTT 60.322 55.000 5.01 0.00 34.47 2.66
734 1571 2.104859 CACTCCTGCACTGCATCCG 61.105 63.158 3.64 0.00 38.13 4.18
794 1656 5.532779 GCTTATCCCTATCCTCCAAAAGTTG 59.467 44.000 0.00 0.00 0.00 3.16
827 1693 2.348998 CCACAGCTCACCTCCCAC 59.651 66.667 0.00 0.00 0.00 4.61
887 1755 1.271102 ACTCAACTGAAGCCTCTCGAC 59.729 52.381 0.00 0.00 0.00 4.20
899 1767 1.204941 CCTCTCGACCACCCTTGTAAG 59.795 57.143 0.00 0.00 0.00 2.34
900 1768 0.606604 TCTCGACCACCCTTGTAAGC 59.393 55.000 0.00 0.00 0.00 3.09
901 1769 0.391263 CTCGACCACCCTTGTAAGCC 60.391 60.000 0.00 0.00 0.00 4.35
902 1770 1.376812 CGACCACCCTTGTAAGCCC 60.377 63.158 0.00 0.00 0.00 5.19
903 1771 1.765074 GACCACCCTTGTAAGCCCA 59.235 57.895 0.00 0.00 0.00 5.36
904 1772 0.322546 GACCACCCTTGTAAGCCCAG 60.323 60.000 0.00 0.00 0.00 4.45
921 1789 2.180276 CCAGGTCTATATAAGCCGCCT 58.820 52.381 0.00 0.00 0.00 5.52
933 1801 3.191539 CCGCCTTTCGCTCTCTGC 61.192 66.667 0.00 0.00 36.73 4.26
944 1812 1.067565 CGCTCTCTGCTTCTTACACCA 60.068 52.381 0.00 0.00 40.11 4.17
945 1813 2.610479 CGCTCTCTGCTTCTTACACCAA 60.610 50.000 0.00 0.00 40.11 3.67
946 1814 2.739379 GCTCTCTGCTTCTTACACCAAC 59.261 50.000 0.00 0.00 38.95 3.77
947 1815 3.330267 CTCTCTGCTTCTTACACCAACC 58.670 50.000 0.00 0.00 0.00 3.77
948 1816 2.069273 CTCTGCTTCTTACACCAACCG 58.931 52.381 0.00 0.00 0.00 4.44
949 1817 1.689813 TCTGCTTCTTACACCAACCGA 59.310 47.619 0.00 0.00 0.00 4.69
1422 2290 4.021925 GACTGGCGGCAGAAGGGT 62.022 66.667 41.51 22.59 0.00 4.34
1449 2317 2.409870 CGCCATCAAGGACCAAGGC 61.410 63.158 0.00 0.00 41.22 4.35
1497 2374 4.340950 TGAGTTTCTTTCTTTTCGGCCATT 59.659 37.500 2.24 0.00 0.00 3.16
1498 2375 4.620982 AGTTTCTTTCTTTTCGGCCATTG 58.379 39.130 2.24 0.00 0.00 2.82
1499 2376 3.658757 TTCTTTCTTTTCGGCCATTGG 57.341 42.857 2.24 0.00 0.00 3.16
1551 2428 1.413118 CTGTGGGAGGCCAAAAACTT 58.587 50.000 5.01 0.00 0.00 2.66
1658 2539 1.601171 GCAGGAGCTCATGGACTGT 59.399 57.895 28.00 0.00 37.91 3.55
1727 2608 4.338879 CCTTCCAGTTCATCCACAAGAAT 58.661 43.478 0.00 0.00 0.00 2.40
1810 2695 1.594331 GTGACAATAATCCCCGGCTC 58.406 55.000 0.00 0.00 0.00 4.70
1883 2780 3.153369 TGTTGCAGGAAAAGGCTCATA 57.847 42.857 0.00 0.00 0.00 2.15
1884 2781 3.495331 TGTTGCAGGAAAAGGCTCATAA 58.505 40.909 0.00 0.00 0.00 1.90
2024 2921 7.595155 TTCTACTCAGAGGTACGTGATCCGT 62.595 48.000 12.72 12.72 41.96 4.69
2070 2972 1.066002 TGTTTGCTTGCTCTTGTCTGC 59.934 47.619 0.00 0.00 0.00 4.26
2087 2989 1.061570 GCGCTATGTTCAGTGCTGC 59.938 57.895 0.00 0.00 46.28 5.25
2100 3002 0.875908 GTGCTGCGTGACAACTCTGA 60.876 55.000 0.00 0.00 0.00 3.27
2101 3003 0.033920 TGCTGCGTGACAACTCTGAT 59.966 50.000 0.00 0.00 0.00 2.90
2102 3004 0.718343 GCTGCGTGACAACTCTGATC 59.282 55.000 0.00 0.00 0.00 2.92
2103 3005 1.936656 GCTGCGTGACAACTCTGATCA 60.937 52.381 0.00 0.00 0.00 2.92
2104 3006 1.723542 CTGCGTGACAACTCTGATCAC 59.276 52.381 0.00 0.16 39.50 3.06
2105 3007 1.071605 GCGTGACAACTCTGATCACC 58.928 55.000 0.00 0.00 39.70 4.02
2106 3008 1.714794 CGTGACAACTCTGATCACCC 58.285 55.000 0.00 0.00 39.70 4.61
2107 3009 1.000843 CGTGACAACTCTGATCACCCA 59.999 52.381 0.00 0.00 39.70 4.51
2108 3010 2.693069 GTGACAACTCTGATCACCCAG 58.307 52.381 0.00 0.00 37.39 4.45
2109 3011 2.037772 GTGACAACTCTGATCACCCAGT 59.962 50.000 0.00 0.00 37.39 4.00
2273 3178 0.331616 AGGTAGGGCCCACAAATGAC 59.668 55.000 27.56 9.45 38.26 3.06
3222 4493 1.819928 TACGCCATGTCAGCAAATGT 58.180 45.000 0.00 0.00 0.00 2.71
3266 4537 9.635404 ATCATCATTAAAATGGCCAAATTCATT 57.365 25.926 10.96 0.00 37.03 2.57
3487 4758 0.107017 CTACCAGGGATGGCACCAAG 60.107 60.000 8.11 0.00 0.00 3.61
3526 4797 4.741239 TGGGGAGAGGACTGGGGC 62.741 72.222 0.00 0.00 0.00 5.80
3654 4925 2.043227 GGTCAGGGAAGGGTCTCATAG 58.957 57.143 0.00 0.00 0.00 2.23
3684 4955 4.576879 CTCTAGATGGCATGCACACATAT 58.423 43.478 21.36 13.29 33.67 1.78
3768 5041 7.987750 TTACTTTATGCAAGATGTTACCACA 57.012 32.000 0.00 0.00 36.21 4.17
3854 5127 9.912634 TCAAATGGATTAAGTGAAATTCAAGAC 57.087 29.630 0.00 0.00 28.23 3.01
3909 5182 3.247442 TCTCGTATTAGCGTGTTGTTGG 58.753 45.455 0.00 0.00 0.00 3.77
3926 5199 2.744202 GTTGGCTTCACTATGACCTGTG 59.256 50.000 0.00 0.00 35.68 3.66
3967 5240 1.742761 CCCTCGACACTACGGTTCTA 58.257 55.000 0.00 0.00 0.00 2.10
3979 5252 5.919141 CACTACGGTTCTATTGCATAGTACC 59.081 44.000 15.61 15.61 44.92 3.34
3980 5253 5.832060 ACTACGGTTCTATTGCATAGTACCT 59.168 40.000 19.64 13.49 45.69 3.08
3995 5268 4.611564 AGTACCTCCTCCTTATGACACT 57.388 45.455 0.00 0.00 0.00 3.55
4018 5291 6.759827 ACTATCGTTTACTGTTTCACTTGTGT 59.240 34.615 0.46 0.00 0.00 3.72
4019 5292 5.459110 TCGTTTACTGTTTCACTTGTGTC 57.541 39.130 0.46 0.00 0.00 3.67
4020 5293 4.930405 TCGTTTACTGTTTCACTTGTGTCA 59.070 37.500 0.46 0.00 0.00 3.58
4021 5294 5.583061 TCGTTTACTGTTTCACTTGTGTCAT 59.417 36.000 0.46 0.00 0.00 3.06
4022 5295 5.676744 CGTTTACTGTTTCACTTGTGTCATG 59.323 40.000 0.46 0.00 0.00 3.07
4023 5296 6.456315 CGTTTACTGTTTCACTTGTGTCATGA 60.456 38.462 0.00 0.00 0.00 3.07
4024 5297 6.993786 TTACTGTTTCACTTGTGTCATGAA 57.006 33.333 0.00 0.00 0.00 2.57
4025 5298 5.895636 ACTGTTTCACTTGTGTCATGAAA 57.104 34.783 0.00 0.00 39.42 2.69
4026 5299 5.883661 ACTGTTTCACTTGTGTCATGAAAG 58.116 37.500 0.00 0.00 41.65 2.62
4027 5300 4.671377 TGTTTCACTTGTGTCATGAAAGC 58.329 39.130 0.00 0.00 41.65 3.51
4028 5301 4.398988 TGTTTCACTTGTGTCATGAAAGCT 59.601 37.500 0.00 0.00 41.65 3.74
4029 5302 5.588246 TGTTTCACTTGTGTCATGAAAGCTA 59.412 36.000 0.00 0.00 41.65 3.32
4030 5303 6.094742 TGTTTCACTTGTGTCATGAAAGCTAA 59.905 34.615 0.00 0.00 41.65 3.09
4031 5304 5.929697 TCACTTGTGTCATGAAAGCTAAG 57.070 39.130 0.00 0.00 0.00 2.18
4032 5305 4.214119 TCACTTGTGTCATGAAAGCTAAGC 59.786 41.667 0.00 0.00 0.00 3.09
4033 5306 4.023792 CACTTGTGTCATGAAAGCTAAGCA 60.024 41.667 0.00 0.00 0.00 3.91
4034 5307 4.763793 ACTTGTGTCATGAAAGCTAAGCAT 59.236 37.500 0.00 0.00 0.00 3.79
4035 5308 4.690184 TGTGTCATGAAAGCTAAGCATG 57.310 40.909 14.03 14.03 40.46 4.06
4036 5309 4.074259 TGTGTCATGAAAGCTAAGCATGT 58.926 39.130 17.60 0.00 40.12 3.21
4037 5310 4.520111 TGTGTCATGAAAGCTAAGCATGTT 59.480 37.500 17.60 0.00 40.12 2.71
4038 5311 5.091431 GTGTCATGAAAGCTAAGCATGTTC 58.909 41.667 17.60 13.78 40.12 3.18
4039 5312 4.761227 TGTCATGAAAGCTAAGCATGTTCA 59.239 37.500 17.60 9.44 40.12 3.18
4040 5313 5.241285 TGTCATGAAAGCTAAGCATGTTCAA 59.759 36.000 17.60 2.48 40.12 2.69
4041 5314 6.071784 TGTCATGAAAGCTAAGCATGTTCAAT 60.072 34.615 17.60 0.00 40.12 2.57
4042 5315 7.121020 TGTCATGAAAGCTAAGCATGTTCAATA 59.879 33.333 17.60 1.34 40.12 1.90
4043 5316 7.970061 GTCATGAAAGCTAAGCATGTTCAATAA 59.030 33.333 17.60 1.15 40.12 1.40
4044 5317 8.689061 TCATGAAAGCTAAGCATGTTCAATAAT 58.311 29.630 17.60 0.00 40.12 1.28
4045 5318 9.309516 CATGAAAGCTAAGCATGTTCAATAATT 57.690 29.630 12.65 0.00 35.78 1.40
4046 5319 8.692110 TGAAAGCTAAGCATGTTCAATAATTG 57.308 30.769 0.00 0.00 0.00 2.32
4047 5320 7.276218 TGAAAGCTAAGCATGTTCAATAATTGC 59.724 33.333 0.00 0.00 0.00 3.56
4048 5321 6.211587 AGCTAAGCATGTTCAATAATTGCA 57.788 33.333 0.00 0.00 35.79 4.08
4049 5322 6.632909 AGCTAAGCATGTTCAATAATTGCAA 58.367 32.000 0.00 0.00 35.79 4.08
4050 5323 6.755141 AGCTAAGCATGTTCAATAATTGCAAG 59.245 34.615 4.94 0.00 35.79 4.01
4051 5324 6.753279 GCTAAGCATGTTCAATAATTGCAAGA 59.247 34.615 4.94 0.00 35.79 3.02
4052 5325 7.276218 GCTAAGCATGTTCAATAATTGCAAGAA 59.724 33.333 4.94 0.00 35.79 2.52
4053 5326 7.966246 AAGCATGTTCAATAATTGCAAGAAA 57.034 28.000 4.94 0.00 35.79 2.52
4081 5354 1.617322 ACGGTCAGAGTGAGTGCTAA 58.383 50.000 0.00 0.00 0.00 3.09
4082 5355 1.961394 ACGGTCAGAGTGAGTGCTAAA 59.039 47.619 0.00 0.00 0.00 1.85
4083 5356 2.563179 ACGGTCAGAGTGAGTGCTAAAT 59.437 45.455 0.00 0.00 0.00 1.40
4084 5357 2.926200 CGGTCAGAGTGAGTGCTAAATG 59.074 50.000 0.00 0.00 0.00 2.32
4085 5358 2.675348 GGTCAGAGTGAGTGCTAAATGC 59.325 50.000 0.00 0.00 43.25 3.56
4117 5390 6.761312 TCCATTTTGCATGATTTGAGAGTTT 58.239 32.000 0.00 0.00 0.00 2.66
4118 5391 6.869913 TCCATTTTGCATGATTTGAGAGTTTC 59.130 34.615 0.00 0.00 0.00 2.78
4119 5392 6.647481 CCATTTTGCATGATTTGAGAGTTTCA 59.353 34.615 0.00 0.00 0.00 2.69
4120 5393 7.359765 CCATTTTGCATGATTTGAGAGTTTCAC 60.360 37.037 0.00 0.00 34.94 3.18
4121 5394 4.771590 TGCATGATTTGAGAGTTTCACC 57.228 40.909 0.00 0.00 34.94 4.02
4122 5395 4.401022 TGCATGATTTGAGAGTTTCACCT 58.599 39.130 0.00 0.00 34.94 4.00
4125 5398 5.860716 GCATGATTTGAGAGTTTCACCTTTC 59.139 40.000 0.00 0.00 34.94 2.62
4126 5399 6.515531 GCATGATTTGAGAGTTTCACCTTTCA 60.516 38.462 0.00 0.00 34.94 2.69
4127 5400 6.377327 TGATTTGAGAGTTTCACCTTTCAC 57.623 37.500 0.00 0.00 34.94 3.18
4129 5402 5.560966 TTTGAGAGTTTCACCTTTCACAC 57.439 39.130 0.00 0.00 34.94 3.82
4133 5406 5.128827 TGAGAGTTTCACCTTTCACACTACT 59.871 40.000 0.00 0.00 0.00 2.57
4135 5408 6.049790 AGAGTTTCACCTTTCACACTACTTC 58.950 40.000 0.00 0.00 0.00 3.01
4136 5409 5.990668 AGTTTCACCTTTCACACTACTTCT 58.009 37.500 0.00 0.00 0.00 2.85
4138 5411 7.210873 AGTTTCACCTTTCACACTACTTCTAG 58.789 38.462 0.00 0.00 0.00 2.43
4139 5412 6.726490 TTCACCTTTCACACTACTTCTAGT 57.274 37.500 0.00 0.00 33.01 2.57
4141 5414 7.828508 TCACCTTTCACACTACTTCTAGTTA 57.171 36.000 0.00 0.00 30.03 2.24
4143 5416 8.698210 TCACCTTTCACACTACTTCTAGTTAAA 58.302 33.333 0.00 0.00 30.03 1.52
4144 5417 9.321562 CACCTTTCACACTACTTCTAGTTAAAA 57.678 33.333 0.00 0.00 30.03 1.52
4165 5438 9.936759 TTAAAATATTTCTGGCTAAACTTTGGG 57.063 29.630 0.10 0.00 0.00 4.12
4168 5441 2.579410 TCTGGCTAAACTTTGGGTCC 57.421 50.000 0.00 0.00 0.00 4.46
4187 5588 9.594936 TTGGGTCCTTAATTTATTTCTTTGAGA 57.405 29.630 0.00 0.00 0.00 3.27
4202 5603 8.477984 TTTCTTTGAGACAACCAAATCAAAAG 57.522 30.769 0.00 0.00 40.17 2.27
4203 5604 7.169158 TCTTTGAGACAACCAAATCAAAAGT 57.831 32.000 0.00 0.00 40.17 2.66
4204 5605 7.035004 TCTTTGAGACAACCAAATCAAAAGTG 58.965 34.615 0.00 0.00 40.17 3.16
4205 5606 6.522625 TTGAGACAACCAAATCAAAAGTGA 57.477 33.333 0.00 0.00 38.41 3.41
4206 5607 6.522625 TGAGACAACCAAATCAAAAGTGAA 57.477 33.333 0.00 0.00 37.30 3.18
4227 6674 6.093219 GTGAAGTGCATGTCAGACAAGATATT 59.907 38.462 7.50 0.44 0.00 1.28
4248 6695 4.891566 CACGAGTGTGTAGCCTCC 57.108 61.111 0.00 0.00 41.34 4.30
4257 6704 1.005037 TGTAGCCTCCAACGTGCTG 60.005 57.895 7.53 0.00 36.57 4.41
4287 6734 4.751767 AGGAGATCTCACTTAAGGCAAG 57.248 45.455 23.85 1.30 40.38 4.01
4288 6735 4.357325 AGGAGATCTCACTTAAGGCAAGA 58.643 43.478 23.85 6.79 37.71 3.02
4303 6750 9.141400 CTTAAGGCAAGAAACTTACTACTACAG 57.859 37.037 0.00 0.00 36.22 2.74
4314 6761 8.788325 AACTTACTACTACAGCTTTTATTGGG 57.212 34.615 0.00 0.00 0.00 4.12
4343 6790 8.470002 AGGTTCAAAATGAAAGATAATACTGGC 58.530 33.333 0.00 0.00 38.22 4.85
4344 6791 8.250332 GGTTCAAAATGAAAGATAATACTGGCA 58.750 33.333 0.00 0.00 38.22 4.92
4345 6792 9.076596 GTTCAAAATGAAAGATAATACTGGCAC 57.923 33.333 0.00 0.00 38.22 5.01
4346 6793 7.471721 TCAAAATGAAAGATAATACTGGCACG 58.528 34.615 0.00 0.00 0.00 5.34
4347 6794 7.120579 TCAAAATGAAAGATAATACTGGCACGT 59.879 33.333 0.00 0.00 0.00 4.49
4348 6795 5.991328 ATGAAAGATAATACTGGCACGTG 57.009 39.130 12.28 12.28 0.00 4.49
4349 6796 4.827692 TGAAAGATAATACTGGCACGTGT 58.172 39.130 18.38 0.00 0.00 4.49
4350 6797 5.968254 TGAAAGATAATACTGGCACGTGTA 58.032 37.500 18.38 5.94 0.00 2.90
4351 6798 6.040247 TGAAAGATAATACTGGCACGTGTAG 58.960 40.000 18.38 17.49 0.00 2.74
4352 6799 5.593679 AAGATAATACTGGCACGTGTAGT 57.406 39.130 24.03 24.03 0.00 2.73
4353 6800 5.593679 AGATAATACTGGCACGTGTAGTT 57.406 39.130 25.17 14.99 0.00 2.24
4354 6801 5.348986 AGATAATACTGGCACGTGTAGTTG 58.651 41.667 25.17 11.95 0.00 3.16
4355 6802 3.671008 AATACTGGCACGTGTAGTTGA 57.329 42.857 25.17 13.69 0.00 3.18
4356 6803 3.887621 ATACTGGCACGTGTAGTTGAT 57.112 42.857 25.17 14.97 0.00 2.57
4357 6804 2.080286 ACTGGCACGTGTAGTTGATC 57.920 50.000 18.38 0.00 0.00 2.92
4358 6805 1.618837 ACTGGCACGTGTAGTTGATCT 59.381 47.619 18.38 0.00 0.00 2.75
4359 6806 2.037251 ACTGGCACGTGTAGTTGATCTT 59.963 45.455 18.38 0.00 0.00 2.40
4360 6807 3.067106 CTGGCACGTGTAGTTGATCTTT 58.933 45.455 18.38 0.00 0.00 2.52
4361 6808 3.472652 TGGCACGTGTAGTTGATCTTTT 58.527 40.909 18.38 0.00 0.00 2.27
4362 6809 3.880490 TGGCACGTGTAGTTGATCTTTTT 59.120 39.130 18.38 0.00 0.00 1.94
4382 6829 6.959671 TTTTTGTCAAATCGAAAAGCAACT 57.040 29.167 0.00 0.00 0.00 3.16
4383 6830 5.947503 TTTGTCAAATCGAAAAGCAACTG 57.052 34.783 0.00 0.00 0.00 3.16
4384 6831 4.891627 TGTCAAATCGAAAAGCAACTGA 57.108 36.364 0.00 0.00 0.00 3.41
4385 6832 4.847633 TGTCAAATCGAAAAGCAACTGAG 58.152 39.130 0.00 0.00 0.00 3.35
4386 6833 3.665871 GTCAAATCGAAAAGCAACTGAGC 59.334 43.478 0.00 0.00 0.00 4.26
4387 6834 2.601481 AATCGAAAAGCAACTGAGCG 57.399 45.000 0.00 0.00 40.15 5.03
4388 6835 0.798776 ATCGAAAAGCAACTGAGCGG 59.201 50.000 0.00 0.00 40.15 5.52
4389 6836 1.441016 CGAAAAGCAACTGAGCGGC 60.441 57.895 0.00 0.00 40.15 6.53
4390 6837 1.845809 CGAAAAGCAACTGAGCGGCT 61.846 55.000 0.00 0.00 40.14 5.52
4391 6838 0.110010 GAAAAGCAACTGAGCGGCTC 60.110 55.000 22.78 22.78 36.76 4.70
4392 6839 1.845809 AAAAGCAACTGAGCGGCTCG 61.846 55.000 23.72 19.67 36.76 5.03
4393 6840 2.996168 AAAGCAACTGAGCGGCTCGT 62.996 55.000 23.72 20.26 36.76 4.18
4394 6841 3.782244 GCAACTGAGCGGCTCGTG 61.782 66.667 23.72 20.73 32.35 4.35
4395 6842 3.782244 CAACTGAGCGGCTCGTGC 61.782 66.667 23.72 0.00 32.35 5.34
4396 6843 4.299547 AACTGAGCGGCTCGTGCA 62.300 61.111 23.72 7.19 41.91 4.57
4397 6844 4.731612 ACTGAGCGGCTCGTGCAG 62.732 66.667 23.72 18.06 41.91 4.41
4398 6845 4.426112 CTGAGCGGCTCGTGCAGA 62.426 66.667 23.72 5.45 41.91 4.26
4399 6846 4.724602 TGAGCGGCTCGTGCAGAC 62.725 66.667 23.72 6.97 41.91 3.51
4400 6847 4.427661 GAGCGGCTCGTGCAGACT 62.428 66.667 15.09 9.55 41.91 3.24
4401 6848 3.923563 GAGCGGCTCGTGCAGACTT 62.924 63.158 15.09 0.00 41.91 3.01
4402 6849 3.044305 GCGGCTCGTGCAGACTTT 61.044 61.111 13.74 0.00 41.91 2.66
4403 6850 2.607892 GCGGCTCGTGCAGACTTTT 61.608 57.895 13.74 0.00 41.91 2.27
4404 6851 1.289109 GCGGCTCGTGCAGACTTTTA 61.289 55.000 13.74 0.00 41.91 1.52
4405 6852 1.359848 CGGCTCGTGCAGACTTTTAT 58.640 50.000 12.07 0.00 41.91 1.40
4406 6853 2.536365 CGGCTCGTGCAGACTTTTATA 58.464 47.619 12.07 0.00 41.91 0.98
4407 6854 2.281762 CGGCTCGTGCAGACTTTTATAC 59.718 50.000 12.07 0.00 41.91 1.47
4408 6855 2.281762 GGCTCGTGCAGACTTTTATACG 59.718 50.000 12.07 0.00 41.91 3.06
4409 6856 2.281762 GCTCGTGCAGACTTTTATACGG 59.718 50.000 4.26 0.00 39.41 4.02
4410 6857 3.508762 CTCGTGCAGACTTTTATACGGT 58.491 45.455 0.00 0.00 32.89 4.83
4411 6858 3.916761 TCGTGCAGACTTTTATACGGTT 58.083 40.909 0.00 0.00 32.89 4.44
4412 6859 3.676172 TCGTGCAGACTTTTATACGGTTG 59.324 43.478 0.00 0.00 32.89 3.77
4413 6860 3.676172 CGTGCAGACTTTTATACGGTTGA 59.324 43.478 0.00 0.00 0.00 3.18
4414 6861 4.433805 CGTGCAGACTTTTATACGGTTGAC 60.434 45.833 0.00 0.00 0.00 3.18
4415 6862 4.449743 GTGCAGACTTTTATACGGTTGACA 59.550 41.667 0.00 0.00 0.00 3.58
4416 6863 5.049954 GTGCAGACTTTTATACGGTTGACAA 60.050 40.000 0.00 0.00 0.00 3.18
4417 6864 5.049954 TGCAGACTTTTATACGGTTGACAAC 60.050 40.000 9.97 9.97 0.00 3.32
4418 6865 5.049954 GCAGACTTTTATACGGTTGACAACA 60.050 40.000 19.58 0.00 0.00 3.33
4419 6866 6.348213 GCAGACTTTTATACGGTTGACAACAT 60.348 38.462 19.58 9.71 0.00 2.71
4420 6867 7.148540 GCAGACTTTTATACGGTTGACAACATA 60.149 37.037 19.58 11.50 0.00 2.29
4421 6868 8.879759 CAGACTTTTATACGGTTGACAACATAT 58.120 33.333 19.58 16.91 0.00 1.78
4422 6869 9.444600 AGACTTTTATACGGTTGACAACATATT 57.555 29.630 19.58 4.77 0.00 1.28
4423 6870 9.485591 GACTTTTATACGGTTGACAACATATTG 57.514 33.333 19.58 6.46 41.98 1.90
4438 6885 7.780253 CAACATATTGTACATGTCACAACAC 57.220 36.000 17.44 5.41 38.63 3.32
4439 6886 7.584108 CAACATATTGTACATGTCACAACACT 58.416 34.615 17.44 8.22 38.63 3.55
4440 6887 7.132694 ACATATTGTACATGTCACAACACTG 57.867 36.000 17.44 16.23 38.63 3.66
4441 6888 6.149308 ACATATTGTACATGTCACAACACTGG 59.851 38.462 17.44 11.05 38.63 4.00
4442 6889 2.844946 TGTACATGTCACAACACTGGG 58.155 47.619 0.00 0.00 38.48 4.45
4443 6890 2.171659 TGTACATGTCACAACACTGGGT 59.828 45.455 0.00 0.00 38.48 4.51
4444 6891 2.435372 ACATGTCACAACACTGGGTT 57.565 45.000 0.00 0.00 38.48 4.11
4445 6892 3.569194 ACATGTCACAACACTGGGTTA 57.431 42.857 0.00 0.00 38.48 2.85
4446 6893 4.098914 ACATGTCACAACACTGGGTTAT 57.901 40.909 0.00 0.00 38.48 1.89
4447 6894 3.820467 ACATGTCACAACACTGGGTTATG 59.180 43.478 0.00 0.00 38.48 1.90
4448 6895 2.226330 TGTCACAACACTGGGTTATGC 58.774 47.619 0.00 0.00 37.72 3.14
4449 6896 1.539827 GTCACAACACTGGGTTATGCC 59.460 52.381 0.00 0.00 37.72 4.40
4450 6897 1.423541 TCACAACACTGGGTTATGCCT 59.576 47.619 0.00 0.00 37.72 4.75
4451 6898 1.812571 CACAACACTGGGTTATGCCTC 59.187 52.381 0.00 0.00 37.72 4.70
4452 6899 1.705186 ACAACACTGGGTTATGCCTCT 59.295 47.619 0.00 0.00 37.72 3.69
4453 6900 2.086869 CAACACTGGGTTATGCCTCTG 58.913 52.381 0.00 0.00 37.72 3.35
4454 6901 0.035056 ACACTGGGTTATGCCTCTGC 60.035 55.000 0.00 0.00 37.43 4.26
4455 6902 1.091771 CACTGGGTTATGCCTCTGCG 61.092 60.000 0.00 0.00 41.78 5.18
4456 6903 1.264749 ACTGGGTTATGCCTCTGCGA 61.265 55.000 0.00 0.00 41.78 5.10
4457 6904 0.107703 CTGGGTTATGCCTCTGCGAA 60.108 55.000 0.00 0.00 41.78 4.70
4458 6905 0.326595 TGGGTTATGCCTCTGCGAAA 59.673 50.000 0.00 0.00 41.78 3.46
4459 6906 1.271652 TGGGTTATGCCTCTGCGAAAA 60.272 47.619 0.00 0.00 41.78 2.29
4460 6907 2.024414 GGGTTATGCCTCTGCGAAAAT 58.976 47.619 0.00 0.00 41.78 1.82
4461 6908 3.211045 GGGTTATGCCTCTGCGAAAATA 58.789 45.455 0.00 0.00 41.78 1.40
4462 6909 3.630312 GGGTTATGCCTCTGCGAAAATAA 59.370 43.478 0.00 0.00 41.78 1.40
4463 6910 4.497507 GGGTTATGCCTCTGCGAAAATAAC 60.498 45.833 0.00 0.00 41.78 1.89
4464 6911 4.095782 GGTTATGCCTCTGCGAAAATAACA 59.904 41.667 0.00 0.00 41.78 2.41
4465 6912 3.764885 ATGCCTCTGCGAAAATAACAC 57.235 42.857 0.00 0.00 41.78 3.32
4466 6913 2.499197 TGCCTCTGCGAAAATAACACA 58.501 42.857 0.00 0.00 41.78 3.72
4467 6914 3.081061 TGCCTCTGCGAAAATAACACAT 58.919 40.909 0.00 0.00 41.78 3.21
4468 6915 3.119884 TGCCTCTGCGAAAATAACACATG 60.120 43.478 0.00 0.00 41.78 3.21
4469 6916 3.126858 GCCTCTGCGAAAATAACACATGA 59.873 43.478 0.00 0.00 0.00 3.07
4470 6917 4.379394 GCCTCTGCGAAAATAACACATGAA 60.379 41.667 0.00 0.00 0.00 2.57
4471 6918 5.698832 CCTCTGCGAAAATAACACATGAAA 58.301 37.500 0.00 0.00 0.00 2.69
4472 6919 6.324819 CCTCTGCGAAAATAACACATGAAAT 58.675 36.000 0.00 0.00 0.00 2.17
4473 6920 7.471721 CCTCTGCGAAAATAACACATGAAATA 58.528 34.615 0.00 0.00 0.00 1.40
4474 6921 7.967854 CCTCTGCGAAAATAACACATGAAATAA 59.032 33.333 0.00 0.00 0.00 1.40
4475 6922 9.340695 CTCTGCGAAAATAACACATGAAATAAA 57.659 29.630 0.00 0.00 0.00 1.40
4476 6923 9.853555 TCTGCGAAAATAACACATGAAATAAAT 57.146 25.926 0.00 0.00 0.00 1.40
4502 6949 8.771920 AAATGATTCAGTATACGAACAGAACA 57.228 30.769 10.81 8.01 29.13 3.18
4503 6950 8.771920 AATGATTCAGTATACGAACAGAACAA 57.228 30.769 10.81 0.89 29.13 2.83
4504 6951 8.771920 ATGATTCAGTATACGAACAGAACAAA 57.228 30.769 10.81 0.00 29.13 2.83
4505 6952 8.771920 TGATTCAGTATACGAACAGAACAAAT 57.228 30.769 10.81 0.00 29.13 2.32
4506 6953 8.655970 TGATTCAGTATACGAACAGAACAAATG 58.344 33.333 10.81 0.00 29.13 2.32
4507 6954 7.956420 TTCAGTATACGAACAGAACAAATGT 57.044 32.000 0.00 0.00 0.00 2.71
4508 6955 7.346208 TCAGTATACGAACAGAACAAATGTG 57.654 36.000 0.00 0.00 0.00 3.21
4509 6956 6.367695 TCAGTATACGAACAGAACAAATGTGG 59.632 38.462 0.00 0.00 0.00 4.17
4510 6957 5.642063 AGTATACGAACAGAACAAATGTGGG 59.358 40.000 0.00 0.00 0.00 4.61
4511 6958 2.925724 ACGAACAGAACAAATGTGGGA 58.074 42.857 0.00 0.00 0.00 4.37
4512 6959 3.283751 ACGAACAGAACAAATGTGGGAA 58.716 40.909 0.00 0.00 0.00 3.97
4513 6960 3.697045 ACGAACAGAACAAATGTGGGAAA 59.303 39.130 0.00 0.00 0.00 3.13
4514 6961 4.158764 ACGAACAGAACAAATGTGGGAAAA 59.841 37.500 0.00 0.00 0.00 2.29
4515 6962 4.739716 CGAACAGAACAAATGTGGGAAAAG 59.260 41.667 0.00 0.00 0.00 2.27
4516 6963 5.449862 CGAACAGAACAAATGTGGGAAAAGA 60.450 40.000 0.00 0.00 0.00 2.52
4517 6964 5.930837 ACAGAACAAATGTGGGAAAAGAA 57.069 34.783 0.00 0.00 0.00 2.52
4518 6965 6.293004 ACAGAACAAATGTGGGAAAAGAAA 57.707 33.333 0.00 0.00 0.00 2.52
4519 6966 6.706295 ACAGAACAAATGTGGGAAAAGAAAA 58.294 32.000 0.00 0.00 0.00 2.29
4520 6967 7.164803 ACAGAACAAATGTGGGAAAAGAAAAA 58.835 30.769 0.00 0.00 0.00 1.94
4521 6968 7.334171 ACAGAACAAATGTGGGAAAAGAAAAAG 59.666 33.333 0.00 0.00 0.00 2.27
4522 6969 7.548780 CAGAACAAATGTGGGAAAAGAAAAAGA 59.451 33.333 0.00 0.00 0.00 2.52
4523 6970 7.549134 AGAACAAATGTGGGAAAAGAAAAAGAC 59.451 33.333 0.00 0.00 0.00 3.01
4524 6971 6.706295 ACAAATGTGGGAAAAGAAAAAGACA 58.294 32.000 0.00 0.00 0.00 3.41
4525 6972 7.337938 ACAAATGTGGGAAAAGAAAAAGACAT 58.662 30.769 0.00 0.00 0.00 3.06
4526 6973 7.280652 ACAAATGTGGGAAAAGAAAAAGACATG 59.719 33.333 0.00 0.00 0.00 3.21
4527 6974 6.729690 ATGTGGGAAAAGAAAAAGACATGA 57.270 33.333 0.00 0.00 0.00 3.07
4528 6975 6.537453 TGTGGGAAAAGAAAAAGACATGAA 57.463 33.333 0.00 0.00 0.00 2.57
4529 6976 6.337356 TGTGGGAAAAGAAAAAGACATGAAC 58.663 36.000 0.00 0.00 0.00 3.18
4530 6977 6.154363 TGTGGGAAAAGAAAAAGACATGAACT 59.846 34.615 0.00 0.00 0.00 3.01
4531 6978 6.697455 GTGGGAAAAGAAAAAGACATGAACTC 59.303 38.462 0.00 0.00 0.00 3.01
4532 6979 6.607198 TGGGAAAAGAAAAAGACATGAACTCT 59.393 34.615 0.00 0.00 0.00 3.24
4533 6980 7.124147 TGGGAAAAGAAAAAGACATGAACTCTT 59.876 33.333 0.00 0.00 0.00 2.85
4534 6981 7.981789 GGGAAAAGAAAAAGACATGAACTCTTT 59.018 33.333 0.00 1.44 39.23 2.52
4535 6982 9.371136 GGAAAAGAAAAAGACATGAACTCTTTT 57.629 29.630 13.84 13.84 45.68 2.27
4563 7010 9.581099 TCTCCTTTTCTTTGTTAAAACATGAAC 57.419 29.630 0.00 0.00 38.95 3.18
4564 7011 9.586435 CTCCTTTTCTTTGTTAAAACATGAACT 57.414 29.630 0.00 0.00 38.95 3.01
4581 7028 9.868277 AACATGAACTATTTTTGAAACTCAACA 57.132 25.926 0.00 0.00 35.89 3.33
4582 7029 9.301153 ACATGAACTATTTTTGAAACTCAACAC 57.699 29.630 0.00 0.00 35.89 3.32
4583 7030 9.520204 CATGAACTATTTTTGAAACTCAACACT 57.480 29.630 0.00 0.00 35.89 3.55
4585 7032 9.921637 TGAACTATTTTTGAAACTCAACACTTT 57.078 25.926 0.00 0.00 35.89 2.66
4667 7114 9.884465 ATTTTTCAAATTTGTGAACGTTTTTCA 57.116 22.222 17.47 0.00 37.24 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.793030 TTCACCGGTTTTCACCAAATATT 57.207 34.783 2.97 0.00 44.53 1.28
2 3 5.793030 TTTCACCGGTTTTCACCAAATAT 57.207 34.783 2.97 0.00 44.53 1.28
4 5 4.473477 TTTTCACCGGTTTTCACCAAAT 57.527 36.364 2.97 0.00 44.53 2.32
5 6 3.955650 TTTTCACCGGTTTTCACCAAA 57.044 38.095 2.97 0.00 44.53 3.28
6 7 3.006537 TGTTTTTCACCGGTTTTCACCAA 59.993 39.130 2.97 0.00 44.53 3.67
7 8 2.561419 TGTTTTTCACCGGTTTTCACCA 59.439 40.909 2.97 0.00 44.53 4.17
8 9 3.233684 TGTTTTTCACCGGTTTTCACC 57.766 42.857 2.97 0.00 40.16 4.02
9 10 3.061563 GCTTGTTTTTCACCGGTTTTCAC 59.938 43.478 2.97 0.00 0.00 3.18
10 11 3.254892 GCTTGTTTTTCACCGGTTTTCA 58.745 40.909 2.97 0.00 0.00 2.69
11 12 2.280445 CGCTTGTTTTTCACCGGTTTTC 59.720 45.455 2.97 0.00 0.00 2.29
12 13 2.094649 TCGCTTGTTTTTCACCGGTTTT 60.095 40.909 2.97 0.00 0.00 2.43
13 14 1.473278 TCGCTTGTTTTTCACCGGTTT 59.527 42.857 2.97 0.00 0.00 3.27
14 15 1.096416 TCGCTTGTTTTTCACCGGTT 58.904 45.000 2.97 0.00 0.00 4.44
15 16 1.001815 CATCGCTTGTTTTTCACCGGT 60.002 47.619 0.00 0.00 0.00 5.28
16 17 1.001815 ACATCGCTTGTTTTTCACCGG 60.002 47.619 0.00 0.00 33.74 5.28
17 18 2.399396 ACATCGCTTGTTTTTCACCG 57.601 45.000 0.00 0.00 33.74 4.94
26 27 4.035017 CGAAACTTCAAAACATCGCTTGT 58.965 39.130 0.00 0.00 41.53 3.16
27 28 4.278858 TCGAAACTTCAAAACATCGCTTG 58.721 39.130 0.00 0.00 0.00 4.01
28 29 4.545823 TCGAAACTTCAAAACATCGCTT 57.454 36.364 0.00 0.00 0.00 4.68
29 30 4.545823 TTCGAAACTTCAAAACATCGCT 57.454 36.364 0.00 0.00 0.00 4.93
30 31 5.613964 TTTTCGAAACTTCAAAACATCGC 57.386 34.783 10.79 0.00 0.00 4.58
67 68 7.067372 TGGCAATAGTCCTTTTAACATCTCATG 59.933 37.037 0.00 0.00 0.00 3.07
68 69 7.118723 TGGCAATAGTCCTTTTAACATCTCAT 58.881 34.615 0.00 0.00 0.00 2.90
69 70 6.480763 TGGCAATAGTCCTTTTAACATCTCA 58.519 36.000 0.00 0.00 0.00 3.27
70 71 7.420800 CATGGCAATAGTCCTTTTAACATCTC 58.579 38.462 0.00 0.00 0.00 2.75
71 72 6.183360 GCATGGCAATAGTCCTTTTAACATCT 60.183 38.462 0.00 0.00 0.00 2.90
72 73 5.979517 GCATGGCAATAGTCCTTTTAACATC 59.020 40.000 0.00 0.00 0.00 3.06
73 74 5.421693 TGCATGGCAATAGTCCTTTTAACAT 59.578 36.000 0.00 0.00 34.76 2.71
74 75 4.769488 TGCATGGCAATAGTCCTTTTAACA 59.231 37.500 0.00 0.00 34.76 2.41
75 76 5.323371 TGCATGGCAATAGTCCTTTTAAC 57.677 39.130 0.00 0.00 34.76 2.01
76 77 5.991933 TTGCATGGCAATAGTCCTTTTAA 57.008 34.783 0.00 0.00 43.99 1.52
86 87 7.228108 TTGAACTTCAAATTTTGCATGGCAATA 59.772 29.630 4.29 0.40 39.77 1.90
87 88 6.039493 TTGAACTTCAAATTTTGCATGGCAAT 59.961 30.769 4.29 0.00 39.77 3.56
88 89 5.356190 TTGAACTTCAAATTTTGCATGGCAA 59.644 32.000 4.19 0.00 38.97 4.52
89 90 4.449131 TGAACTTCAAATTTTGCATGGCA 58.551 34.783 4.19 0.00 36.47 4.92
90 91 5.421212 TTGAACTTCAAATTTTGCATGGC 57.579 34.783 4.19 0.00 32.71 4.40
91 92 6.783162 TGTTTGAACTTCAAATTTTGCATGG 58.217 32.000 17.84 0.00 46.55 3.66
92 93 8.738554 CATTGTTTGAACTTCAAATTTTGCATG 58.261 29.630 17.84 10.85 46.55 4.06
93 94 8.675504 TCATTGTTTGAACTTCAAATTTTGCAT 58.324 25.926 17.84 4.44 46.55 3.96
94 95 8.037382 TCATTGTTTGAACTTCAAATTTTGCA 57.963 26.923 17.84 9.48 46.55 4.08
95 96 8.949953 CATCATTGTTTGAACTTCAAATTTTGC 58.050 29.630 17.84 7.34 46.55 3.68
96 97 9.991388 ACATCATTGTTTGAACTTCAAATTTTG 57.009 25.926 17.84 14.72 46.55 2.44
99 100 9.603921 AGAACATCATTGTTTGAACTTCAAATT 57.396 25.926 17.84 7.46 46.55 1.82
100 101 9.603921 AAGAACATCATTGTTTGAACTTCAAAT 57.396 25.926 17.84 2.30 46.55 2.32
135 136 9.521841 AGATATTATGAGGATAACGAGAAGTCA 57.478 33.333 0.00 0.00 0.00 3.41
144 145 7.777095 AGGAGCGAAGATATTATGAGGATAAC 58.223 38.462 0.00 0.00 0.00 1.89
152 153 7.895975 TTCAATGAGGAGCGAAGATATTATG 57.104 36.000 0.00 0.00 0.00 1.90
165 166 3.490348 AGGTGTTGGTTTCAATGAGGAG 58.510 45.455 0.00 0.00 35.10 3.69
171 172 4.766891 CAGGTGATAGGTGTTGGTTTCAAT 59.233 41.667 0.00 0.00 35.10 2.57
253 254 4.743151 TGTTGTTCGTATAATCTCATCGGC 59.257 41.667 0.00 0.00 0.00 5.54
258 259 7.107639 TCCTCATGTTGTTCGTATAATCTCA 57.892 36.000 0.00 0.00 0.00 3.27
274 275 4.463539 TGCTTACAATGCATTTCCTCATGT 59.536 37.500 9.83 6.17 35.31 3.21
289 290 1.681538 TTTTGCGAGGGTGCTTACAA 58.318 45.000 0.00 0.00 35.36 2.41
320 321 1.134995 GGGCCTTGCTTACAATGCTTC 60.135 52.381 0.84 0.00 44.20 3.86
404 405 4.505217 CATCGTCGCGCAGTTGCC 62.505 66.667 8.75 0.00 37.91 4.52
412 413 3.829044 TACCCCCACATCGTCGCG 61.829 66.667 0.00 0.00 0.00 5.87
425 426 1.423921 CCCCTATCACCAATGGTACCC 59.576 57.143 10.07 0.00 32.11 3.69
443 444 0.743097 GGAAAGAGCACATGCATCCC 59.257 55.000 6.64 0.00 45.16 3.85
452 479 3.119096 GCGGTCGGGAAAGAGCAC 61.119 66.667 0.00 0.00 38.44 4.40
463 490 2.204491 GTCATATGTGACGCGGTCG 58.796 57.895 12.47 0.00 44.71 4.79
595 1432 9.178758 ACTCATATTTCGAGGCTCTTTTAATTT 57.821 29.630 13.50 0.04 34.66 1.82
598 1435 9.261180 CATACTCATATTTCGAGGCTCTTTTAA 57.739 33.333 13.50 1.72 34.66 1.52
620 1457 6.805271 GCATGCCACATTTGAGATAATCATAC 59.195 38.462 6.36 0.00 37.89 2.39
734 1571 1.844687 AGGAAGGCTTTCAGATTGGC 58.155 50.000 8.54 0.00 34.90 4.52
887 1755 1.000896 CCTGGGCTTACAAGGGTGG 60.001 63.158 0.00 0.00 0.00 4.61
899 1767 1.405661 GCGGCTTATATAGACCTGGGC 60.406 57.143 0.00 0.00 0.00 5.36
900 1768 1.207329 GGCGGCTTATATAGACCTGGG 59.793 57.143 0.00 0.00 0.00 4.45
901 1769 2.180276 AGGCGGCTTATATAGACCTGG 58.820 52.381 5.25 0.00 0.00 4.45
902 1770 3.963428 AAGGCGGCTTATATAGACCTG 57.037 47.619 24.31 0.00 0.00 4.00
903 1771 3.056749 CGAAAGGCGGCTTATATAGACCT 60.057 47.826 25.79 5.47 36.03 3.85
904 1772 3.251571 CGAAAGGCGGCTTATATAGACC 58.748 50.000 25.79 6.04 36.03 3.85
933 1801 4.177026 CTGAGATCGGTTGGTGTAAGAAG 58.823 47.826 0.00 0.00 0.00 2.85
944 1812 2.239400 TGTGTGAGACTGAGATCGGTT 58.761 47.619 0.00 0.00 35.19 4.44
945 1813 1.911057 TGTGTGAGACTGAGATCGGT 58.089 50.000 0.00 0.00 38.36 4.69
946 1814 3.378427 TGTATGTGTGAGACTGAGATCGG 59.622 47.826 0.00 0.00 0.00 4.18
947 1815 4.095632 ACTGTATGTGTGAGACTGAGATCG 59.904 45.833 0.00 0.00 0.00 3.69
948 1816 5.574891 ACTGTATGTGTGAGACTGAGATC 57.425 43.478 0.00 0.00 0.00 2.75
949 1817 5.592282 CCTACTGTATGTGTGAGACTGAGAT 59.408 44.000 0.00 0.00 0.00 2.75
1449 2317 2.434185 ATGCACGTACCGCACTGG 60.434 61.111 6.76 0.00 43.35 4.00
1497 2374 1.476085 CAGCTTTTGACACAACCACCA 59.524 47.619 0.00 0.00 0.00 4.17
1498 2375 1.476488 ACAGCTTTTGACACAACCACC 59.524 47.619 0.00 0.00 0.00 4.61
1499 2376 2.094752 ACACAGCTTTTGACACAACCAC 60.095 45.455 0.00 0.00 0.00 4.16
1551 2428 1.075482 CCCAGCAGCTCCCTTGAAA 59.925 57.895 0.00 0.00 0.00 2.69
1658 2539 1.374560 CCTGGTTGTTGACGTTGTCA 58.625 50.000 0.00 0.00 41.09 3.58
1727 2608 1.987855 GGACTCGGTGGTGATCCCA 60.988 63.158 0.00 0.00 42.51 4.37
1810 2695 2.037136 CAAGTTCAGAGCAGCCGGG 61.037 63.158 2.18 0.00 0.00 5.73
1822 2707 1.742268 GATTCTCAGCCTGGCAAGTTC 59.258 52.381 22.65 14.05 0.00 3.01
1823 2708 1.353694 AGATTCTCAGCCTGGCAAGTT 59.646 47.619 22.65 9.69 0.00 2.66
1854 2739 5.050159 GCCTTTTCCTGCAACATTTAACAAG 60.050 40.000 0.00 0.00 0.00 3.16
1857 2742 4.631131 AGCCTTTTCCTGCAACATTTAAC 58.369 39.130 0.00 0.00 0.00 2.01
1858 2743 4.343526 TGAGCCTTTTCCTGCAACATTTAA 59.656 37.500 0.00 0.00 0.00 1.52
1859 2744 3.894427 TGAGCCTTTTCCTGCAACATTTA 59.106 39.130 0.00 0.00 0.00 1.40
1883 2780 1.638388 TAGCCGTCGATCGTCACGTT 61.638 55.000 22.63 15.02 37.94 3.99
1884 2781 2.102438 TAGCCGTCGATCGTCACGT 61.102 57.895 22.63 11.52 37.94 4.49
2024 2921 1.974265 TCAATTGCACGGAGTTGGAA 58.026 45.000 0.00 0.00 41.61 3.53
2070 2972 1.346197 CGCAGCACTGAACATAGCG 59.654 57.895 0.81 0.00 37.68 4.26
2084 2986 1.723542 GTGATCAGAGTTGTCACGCAG 59.276 52.381 0.00 0.00 33.73 5.18
2087 2989 1.000843 TGGGTGATCAGAGTTGTCACG 59.999 52.381 0.00 0.00 42.34 4.35
2103 3005 2.363306 TTCTGCAATTCACACTGGGT 57.637 45.000 0.00 0.00 0.00 4.51
2104 3006 3.181477 TGTTTTCTGCAATTCACACTGGG 60.181 43.478 0.00 0.00 0.00 4.45
2105 3007 4.044336 TGTTTTCTGCAATTCACACTGG 57.956 40.909 0.00 0.00 0.00 4.00
2106 3008 4.380678 CGATGTTTTCTGCAATTCACACTG 59.619 41.667 0.00 0.00 0.00 3.66
2107 3009 4.275689 TCGATGTTTTCTGCAATTCACACT 59.724 37.500 0.00 0.00 0.00 3.55
2108 3010 4.379793 GTCGATGTTTTCTGCAATTCACAC 59.620 41.667 0.00 0.00 0.00 3.82
2109 3011 4.036144 TGTCGATGTTTTCTGCAATTCACA 59.964 37.500 0.00 0.00 0.00 3.58
2273 3178 3.789791 GCATGAACAGTTATGCCACATCG 60.790 47.826 0.00 0.00 42.88 3.84
3222 4493 0.923729 ATTATGACAGGTGGGCCCCA 60.924 55.000 22.27 9.31 34.57 4.96
3349 4620 4.614284 CAGAAAACATCGACATTGAAGCAC 59.386 41.667 0.00 0.00 0.00 4.40
3487 4758 3.119919 ACGAGTTCTTGACGATCCAGTAC 60.120 47.826 0.00 0.00 0.00 2.73
3526 4797 1.403814 TCCTGATGTAGCCCTTCTCG 58.596 55.000 0.00 0.00 0.00 4.04
3566 4837 4.729918 GCCACACTGCCCCTCTGG 62.730 72.222 0.00 0.00 37.09 3.86
3628 4899 2.660064 CCCTTCCCTGACCGTCCTG 61.660 68.421 0.00 0.00 0.00 3.86
3634 4905 2.043227 CTATGAGACCCTTCCCTGACC 58.957 57.143 0.00 0.00 0.00 4.02
3654 4925 3.327626 CATGCCATCTAGAGCTCATCAC 58.672 50.000 17.77 0.00 0.00 3.06
3671 4942 4.156182 CGAATGATCATATGTGTGCATGC 58.844 43.478 11.82 11.82 36.58 4.06
3684 4955 1.065926 AGCTTGCACTCCGAATGATCA 60.066 47.619 0.00 0.00 0.00 2.92
3765 5038 8.635124 CCTTTGCTTACGTTTATTACATTTGTG 58.365 33.333 0.00 0.00 0.00 3.33
3768 5041 8.569641 TGTCCTTTGCTTACGTTTATTACATTT 58.430 29.630 0.00 0.00 0.00 2.32
3854 5127 2.999331 ACCAATCCGAATACAACCCAG 58.001 47.619 0.00 0.00 0.00 4.45
3909 5182 2.350522 CCACACAGGTCATAGTGAAGC 58.649 52.381 0.00 0.00 39.03 3.86
3926 5199 2.084546 GATTAGACCAGGCACAACCAC 58.915 52.381 0.00 0.00 43.14 4.16
3967 5240 6.014156 GTCATAAGGAGGAGGTACTATGCAAT 60.014 42.308 0.00 0.00 41.55 3.56
3995 5268 6.757478 TGACACAAGTGAAACAGTAAACGATA 59.243 34.615 7.28 0.00 41.43 2.92
4018 5291 5.963176 TTGAACATGCTTAGCTTTCATGA 57.037 34.783 21.57 0.00 39.80 3.07
4019 5292 8.867112 ATTATTGAACATGCTTAGCTTTCATG 57.133 30.769 16.20 16.20 42.27 3.07
4020 5293 9.309516 CAATTATTGAACATGCTTAGCTTTCAT 57.690 29.630 5.60 5.31 0.00 2.57
4021 5294 7.276218 GCAATTATTGAACATGCTTAGCTTTCA 59.724 33.333 9.36 8.83 34.29 2.69
4022 5295 7.276218 TGCAATTATTGAACATGCTTAGCTTTC 59.724 33.333 9.36 6.33 37.86 2.62
4023 5296 7.098477 TGCAATTATTGAACATGCTTAGCTTT 58.902 30.769 9.36 0.00 37.86 3.51
4024 5297 6.632909 TGCAATTATTGAACATGCTTAGCTT 58.367 32.000 9.36 0.00 37.86 3.74
4025 5298 6.211587 TGCAATTATTGAACATGCTTAGCT 57.788 33.333 9.36 0.00 37.86 3.32
4026 5299 6.753279 TCTTGCAATTATTGAACATGCTTAGC 59.247 34.615 9.36 0.00 37.86 3.09
4027 5300 8.692110 TTCTTGCAATTATTGAACATGCTTAG 57.308 30.769 9.36 0.00 37.86 2.18
4028 5301 9.486497 TTTTCTTGCAATTATTGAACATGCTTA 57.514 25.926 9.36 0.00 37.86 3.09
4029 5302 7.966246 TTTCTTGCAATTATTGAACATGCTT 57.034 28.000 9.36 0.00 37.86 3.91
4030 5303 7.095102 GGTTTTCTTGCAATTATTGAACATGCT 60.095 33.333 9.36 0.00 37.86 3.79
4031 5304 7.017055 GGTTTTCTTGCAATTATTGAACATGC 58.983 34.615 9.36 0.00 37.52 4.06
4032 5305 7.361116 GGGGTTTTCTTGCAATTATTGAACATG 60.361 37.037 9.36 0.00 0.00 3.21
4033 5306 6.654582 GGGGTTTTCTTGCAATTATTGAACAT 59.345 34.615 9.36 0.00 0.00 2.71
4034 5307 5.994668 GGGGTTTTCTTGCAATTATTGAACA 59.005 36.000 9.36 0.00 0.00 3.18
4035 5308 5.994668 TGGGGTTTTCTTGCAATTATTGAAC 59.005 36.000 9.36 3.11 0.00 3.18
4036 5309 6.179906 TGGGGTTTTCTTGCAATTATTGAA 57.820 33.333 9.36 0.00 0.00 2.69
4037 5310 5.815233 TGGGGTTTTCTTGCAATTATTGA 57.185 34.783 9.36 0.00 0.00 2.57
4038 5311 6.874288 TTTGGGGTTTTCTTGCAATTATTG 57.126 33.333 0.00 0.00 0.00 1.90
4039 5312 6.017523 CGTTTTGGGGTTTTCTTGCAATTATT 60.018 34.615 0.00 0.00 0.00 1.40
4040 5313 5.468409 CGTTTTGGGGTTTTCTTGCAATTAT 59.532 36.000 0.00 0.00 0.00 1.28
4041 5314 4.811557 CGTTTTGGGGTTTTCTTGCAATTA 59.188 37.500 0.00 0.00 0.00 1.40
4042 5315 3.625313 CGTTTTGGGGTTTTCTTGCAATT 59.375 39.130 0.00 0.00 0.00 2.32
4043 5316 3.202097 CGTTTTGGGGTTTTCTTGCAAT 58.798 40.909 0.00 0.00 0.00 3.56
4044 5317 2.622436 CGTTTTGGGGTTTTCTTGCAA 58.378 42.857 0.00 0.00 0.00 4.08
4045 5318 1.134670 CCGTTTTGGGGTTTTCTTGCA 60.135 47.619 0.00 0.00 0.00 4.08
4046 5319 1.134640 ACCGTTTTGGGGTTTTCTTGC 60.135 47.619 0.00 0.00 44.64 4.01
4047 5320 2.166664 TGACCGTTTTGGGGTTTTCTTG 59.833 45.455 0.00 0.00 44.64 3.02
4048 5321 2.429250 CTGACCGTTTTGGGGTTTTCTT 59.571 45.455 0.00 0.00 44.64 2.52
4049 5322 2.028876 CTGACCGTTTTGGGGTTTTCT 58.971 47.619 0.00 0.00 44.64 2.52
4050 5323 2.025898 TCTGACCGTTTTGGGGTTTTC 58.974 47.619 0.00 0.00 44.64 2.29
4051 5324 2.028876 CTCTGACCGTTTTGGGGTTTT 58.971 47.619 0.00 0.00 44.64 2.43
4052 5325 1.064240 ACTCTGACCGTTTTGGGGTTT 60.064 47.619 0.00 0.00 44.64 3.27
4053 5326 0.549469 ACTCTGACCGTTTTGGGGTT 59.451 50.000 0.00 0.00 44.64 4.11
4081 5354 7.276658 TCATGCAAAATGGATTATTCTGCATT 58.723 30.769 9.90 0.00 44.35 3.56
4082 5355 6.822442 TCATGCAAAATGGATTATTCTGCAT 58.178 32.000 7.42 7.42 46.86 3.96
4083 5356 6.223351 TCATGCAAAATGGATTATTCTGCA 57.777 33.333 3.46 3.46 42.02 4.41
4084 5357 7.724305 AATCATGCAAAATGGATTATTCTGC 57.276 32.000 0.00 0.00 0.00 4.26
4085 5358 9.320352 TCAAATCATGCAAAATGGATTATTCTG 57.680 29.630 0.00 0.00 30.29 3.02
4086 5359 9.542462 CTCAAATCATGCAAAATGGATTATTCT 57.458 29.630 0.00 0.00 30.29 2.40
4087 5360 9.537192 TCTCAAATCATGCAAAATGGATTATTC 57.463 29.630 0.00 0.00 30.29 1.75
4088 5361 9.542462 CTCTCAAATCATGCAAAATGGATTATT 57.458 29.630 0.00 0.00 30.29 1.40
4089 5362 8.701895 ACTCTCAAATCATGCAAAATGGATTAT 58.298 29.630 0.00 0.00 30.29 1.28
4095 5368 7.359765 GGTGAAACTCTCAAATCATGCAAAATG 60.360 37.037 0.00 0.00 35.22 2.32
4103 5376 6.547141 TGTGAAAGGTGAAACTCTCAAATCAT 59.453 34.615 0.00 0.00 35.22 2.45
4106 5379 5.888161 AGTGTGAAAGGTGAAACTCTCAAAT 59.112 36.000 0.00 0.00 35.22 2.32
4110 5383 5.602628 AGTAGTGTGAAAGGTGAAACTCTC 58.397 41.667 0.00 0.00 36.74 3.20
4117 5390 6.726490 AACTAGAAGTAGTGTGAAAGGTGA 57.274 37.500 0.00 0.00 39.60 4.02
4118 5391 8.882415 TTTAACTAGAAGTAGTGTGAAAGGTG 57.118 34.615 0.00 0.00 39.60 4.00
4139 5412 9.936759 CCCAAAGTTTAGCCAGAAATATTTTAA 57.063 29.630 1.43 0.00 0.00 1.52
4141 5414 7.973402 ACCCAAAGTTTAGCCAGAAATATTTT 58.027 30.769 1.43 0.00 0.00 1.82
4143 5416 6.154534 GGACCCAAAGTTTAGCCAGAAATATT 59.845 38.462 0.00 0.00 0.00 1.28
4144 5417 5.656859 GGACCCAAAGTTTAGCCAGAAATAT 59.343 40.000 0.00 0.00 0.00 1.28
4147 5420 3.117284 AGGACCCAAAGTTTAGCCAGAAA 60.117 43.478 0.00 0.00 0.00 2.52
4148 5421 2.445525 AGGACCCAAAGTTTAGCCAGAA 59.554 45.455 0.00 0.00 0.00 3.02
4150 5423 2.586648 AGGACCCAAAGTTTAGCCAG 57.413 50.000 0.00 0.00 0.00 4.85
4151 5424 4.456662 TTAAGGACCCAAAGTTTAGCCA 57.543 40.909 0.00 0.00 0.00 4.75
4153 5426 9.938280 AAATAAATTAAGGACCCAAAGTTTAGC 57.062 29.630 0.00 0.00 0.00 3.09
4162 5435 9.020731 GTCTCAAAGAAATAAATTAAGGACCCA 57.979 33.333 0.00 0.00 0.00 4.51
4182 5583 6.522625 TCACTTTTGATTTGGTTGTCTCAA 57.477 33.333 0.00 0.00 0.00 3.02
4187 5588 4.869861 GCACTTCACTTTTGATTTGGTTGT 59.130 37.500 0.00 0.00 0.00 3.32
4196 5597 4.035558 GTCTGACATGCACTTCACTTTTGA 59.964 41.667 2.24 0.00 0.00 2.69
4202 5603 3.133691 TCTTGTCTGACATGCACTTCAC 58.866 45.455 11.86 0.00 0.00 3.18
4203 5604 3.473923 TCTTGTCTGACATGCACTTCA 57.526 42.857 11.86 0.00 0.00 3.02
4204 5605 6.674694 AATATCTTGTCTGACATGCACTTC 57.325 37.500 11.86 0.00 0.00 3.01
4205 5606 8.454106 GTTTAATATCTTGTCTGACATGCACTT 58.546 33.333 11.86 9.57 0.00 3.16
4206 5607 7.607607 TGTTTAATATCTTGTCTGACATGCACT 59.392 33.333 11.86 5.20 0.00 4.40
4248 6695 3.963665 TCCTTTTCAATTCAGCACGTTG 58.036 40.909 0.00 0.00 0.00 4.10
4257 6704 8.672815 CCTTAAGTGAGATCTCCTTTTCAATTC 58.327 37.037 23.15 0.00 31.37 2.17
4288 6735 9.227777 CCCAATAAAAGCTGTAGTAGTAAGTTT 57.772 33.333 0.00 0.00 0.00 2.66
4303 6750 3.676291 TGAACCTTGCCCAATAAAAGC 57.324 42.857 0.00 0.00 0.00 3.51
4314 6761 9.860898 AGTATTATCTTTCATTTTGAACCTTGC 57.139 29.630 0.00 0.00 35.89 4.01
4359 6806 6.587990 TCAGTTGCTTTTCGATTTGACAAAAA 59.412 30.769 4.41 0.00 0.00 1.94
4360 6807 6.096036 TCAGTTGCTTTTCGATTTGACAAAA 58.904 32.000 4.41 0.00 0.00 2.44
4361 6808 5.645624 TCAGTTGCTTTTCGATTTGACAAA 58.354 33.333 2.48 2.48 0.00 2.83
4362 6809 5.242069 TCAGTTGCTTTTCGATTTGACAA 57.758 34.783 0.00 0.00 0.00 3.18
4363 6810 4.789481 GCTCAGTTGCTTTTCGATTTGACA 60.789 41.667 0.00 0.00 0.00 3.58
4364 6811 3.665871 GCTCAGTTGCTTTTCGATTTGAC 59.334 43.478 0.00 0.00 0.00 3.18
4365 6812 3.606846 CGCTCAGTTGCTTTTCGATTTGA 60.607 43.478 0.00 0.00 0.00 2.69
4366 6813 2.653584 CGCTCAGTTGCTTTTCGATTTG 59.346 45.455 0.00 0.00 0.00 2.32
4367 6814 2.350772 CCGCTCAGTTGCTTTTCGATTT 60.351 45.455 0.00 0.00 0.00 2.17
4368 6815 1.197721 CCGCTCAGTTGCTTTTCGATT 59.802 47.619 0.00 0.00 0.00 3.34
4369 6816 0.798776 CCGCTCAGTTGCTTTTCGAT 59.201 50.000 0.00 0.00 0.00 3.59
4370 6817 1.841663 GCCGCTCAGTTGCTTTTCGA 61.842 55.000 0.00 0.00 0.00 3.71
4371 6818 1.441016 GCCGCTCAGTTGCTTTTCG 60.441 57.895 0.00 0.00 0.00 3.46
4372 6819 0.110010 GAGCCGCTCAGTTGCTTTTC 60.110 55.000 15.78 0.00 34.99 2.29
4373 6820 1.845809 CGAGCCGCTCAGTTGCTTTT 61.846 55.000 20.22 0.00 34.99 2.27
4374 6821 2.320587 CGAGCCGCTCAGTTGCTTT 61.321 57.895 20.22 0.00 34.99 3.51
4375 6822 2.740055 CGAGCCGCTCAGTTGCTT 60.740 61.111 20.22 0.00 34.99 3.91
4376 6823 3.996124 ACGAGCCGCTCAGTTGCT 61.996 61.111 20.22 0.00 38.24 3.91
4377 6824 3.782244 CACGAGCCGCTCAGTTGC 61.782 66.667 20.22 0.00 0.00 4.17
4378 6825 3.782244 GCACGAGCCGCTCAGTTG 61.782 66.667 20.22 13.79 33.58 3.16
4379 6826 4.299547 TGCACGAGCCGCTCAGTT 62.300 61.111 20.22 0.84 41.13 3.16
4380 6827 4.731612 CTGCACGAGCCGCTCAGT 62.732 66.667 20.22 15.01 41.13 3.41
4381 6828 4.426112 TCTGCACGAGCCGCTCAG 62.426 66.667 20.22 14.41 41.13 3.35
4382 6829 4.724602 GTCTGCACGAGCCGCTCA 62.725 66.667 20.22 0.24 41.13 4.26
4383 6830 3.923563 AAGTCTGCACGAGCCGCTC 62.924 63.158 10.59 10.59 41.13 5.03
4384 6831 2.996168 AAAAGTCTGCACGAGCCGCT 62.996 55.000 1.39 0.00 41.13 5.52
4385 6832 1.289109 TAAAAGTCTGCACGAGCCGC 61.289 55.000 1.39 0.00 41.13 6.53
4386 6833 1.359848 ATAAAAGTCTGCACGAGCCG 58.640 50.000 1.39 0.00 41.13 5.52
4387 6834 2.281762 CGTATAAAAGTCTGCACGAGCC 59.718 50.000 1.39 0.00 41.13 4.70
4388 6835 2.281762 CCGTATAAAAGTCTGCACGAGC 59.718 50.000 0.00 0.00 42.57 5.03
4389 6836 3.508762 ACCGTATAAAAGTCTGCACGAG 58.491 45.455 0.00 0.00 0.00 4.18
4390 6837 3.581024 ACCGTATAAAAGTCTGCACGA 57.419 42.857 0.00 0.00 0.00 4.35
4391 6838 3.676172 TCAACCGTATAAAAGTCTGCACG 59.324 43.478 0.00 0.00 0.00 5.34
4392 6839 4.449743 TGTCAACCGTATAAAAGTCTGCAC 59.550 41.667 0.00 0.00 0.00 4.57
4393 6840 4.633175 TGTCAACCGTATAAAAGTCTGCA 58.367 39.130 0.00 0.00 0.00 4.41
4394 6841 5.049954 TGTTGTCAACCGTATAAAAGTCTGC 60.050 40.000 13.13 0.00 0.00 4.26
4395 6842 6.533819 TGTTGTCAACCGTATAAAAGTCTG 57.466 37.500 13.13 0.00 0.00 3.51
4396 6843 9.444600 AATATGTTGTCAACCGTATAAAAGTCT 57.555 29.630 13.13 0.00 0.00 3.24
4397 6844 9.485591 CAATATGTTGTCAACCGTATAAAAGTC 57.514 33.333 13.13 0.00 0.00 3.01
4398 6845 9.005777 ACAATATGTTGTCAACCGTATAAAAGT 57.994 29.630 13.13 6.52 45.14 2.66
4401 6848 9.433153 TGTACAATATGTTGTCAACCGTATAAA 57.567 29.630 11.45 0.00 45.14 1.40
4402 6849 8.999220 TGTACAATATGTTGTCAACCGTATAA 57.001 30.769 11.45 0.00 45.14 0.98
4403 6850 9.036671 CATGTACAATATGTTGTCAACCGTATA 57.963 33.333 11.45 5.16 45.14 1.47
4404 6851 7.551262 ACATGTACAATATGTTGTCAACCGTAT 59.449 33.333 11.45 8.65 45.14 3.06
4405 6852 6.874664 ACATGTACAATATGTTGTCAACCGTA 59.125 34.615 11.45 6.79 45.14 4.02
4406 6853 5.703592 ACATGTACAATATGTTGTCAACCGT 59.296 36.000 11.45 4.79 45.14 4.83
4407 6854 6.128418 TGACATGTACAATATGTTGTCAACCG 60.128 38.462 20.08 2.90 45.14 4.44
4408 6855 7.021196 GTGACATGTACAATATGTTGTCAACC 58.979 38.462 22.67 12.17 45.14 3.77
4409 6856 7.580600 TGTGACATGTACAATATGTTGTCAAC 58.419 34.615 22.67 17.85 45.14 3.18
4410 6857 7.736447 TGTGACATGTACAATATGTTGTCAA 57.264 32.000 22.67 13.69 45.14 3.18
4411 6858 7.227512 TGTTGTGACATGTACAATATGTTGTCA 59.772 33.333 18.99 18.99 45.14 3.58
4412 6859 7.533900 GTGTTGTGACATGTACAATATGTTGTC 59.466 37.037 11.45 15.09 41.74 3.18
4413 6860 7.228507 AGTGTTGTGACATGTACAATATGTTGT 59.771 33.333 12.73 12.73 43.45 3.32
4414 6861 7.534918 CAGTGTTGTGACATGTACAATATGTTG 59.465 37.037 17.83 0.00 39.88 3.33
4415 6862 7.308529 CCAGTGTTGTGACATGTACAATATGTT 60.309 37.037 17.83 7.98 39.88 2.71
4416 6863 6.149308 CCAGTGTTGTGACATGTACAATATGT 59.851 38.462 17.83 0.00 39.88 2.29
4417 6864 6.403527 CCCAGTGTTGTGACATGTACAATATG 60.404 42.308 17.83 15.94 39.88 1.78
4418 6865 5.647658 CCCAGTGTTGTGACATGTACAATAT 59.352 40.000 17.83 8.99 39.88 1.28
4419 6866 5.000591 CCCAGTGTTGTGACATGTACAATA 58.999 41.667 17.83 14.41 39.88 1.90
4420 6867 3.820467 CCCAGTGTTGTGACATGTACAAT 59.180 43.478 17.83 8.37 39.88 2.71
4421 6868 3.210227 CCCAGTGTTGTGACATGTACAA 58.790 45.455 0.00 7.50 38.23 2.41
4422 6869 2.171659 ACCCAGTGTTGTGACATGTACA 59.828 45.455 0.00 0.00 38.23 2.90
4423 6870 2.846193 ACCCAGTGTTGTGACATGTAC 58.154 47.619 0.00 0.00 38.23 2.90
4424 6871 3.569194 AACCCAGTGTTGTGACATGTA 57.431 42.857 0.00 0.00 38.23 2.29
4425 6872 2.435372 AACCCAGTGTTGTGACATGT 57.565 45.000 0.00 0.00 38.23 3.21
4426 6873 3.366273 GCATAACCCAGTGTTGTGACATG 60.366 47.826 6.06 0.00 45.87 3.21
4427 6874 2.819608 GCATAACCCAGTGTTGTGACAT 59.180 45.455 6.06 0.00 45.87 3.06
4428 6875 2.226330 GCATAACCCAGTGTTGTGACA 58.774 47.619 6.06 0.00 45.87 3.58
4429 6876 1.539827 GGCATAACCCAGTGTTGTGAC 59.460 52.381 6.06 0.00 45.87 3.67
4430 6877 1.423541 AGGCATAACCCAGTGTTGTGA 59.576 47.619 6.06 0.00 45.87 3.58
4431 6878 1.812571 GAGGCATAACCCAGTGTTGTG 59.187 52.381 0.00 0.00 45.78 3.33
4432 6879 1.705186 AGAGGCATAACCCAGTGTTGT 59.295 47.619 0.00 0.00 40.58 3.32
4433 6880 2.086869 CAGAGGCATAACCCAGTGTTG 58.913 52.381 0.00 0.00 40.58 3.33
4434 6881 1.614317 GCAGAGGCATAACCCAGTGTT 60.614 52.381 0.00 0.00 40.58 3.32
4435 6882 0.035056 GCAGAGGCATAACCCAGTGT 60.035 55.000 0.00 0.00 40.58 3.55
4436 6883 1.091771 CGCAGAGGCATAACCCAGTG 61.092 60.000 0.00 0.00 40.58 3.66
4437 6884 1.221840 CGCAGAGGCATAACCCAGT 59.778 57.895 0.00 0.00 40.58 4.00
4438 6885 0.107703 TTCGCAGAGGCATAACCCAG 60.108 55.000 0.00 0.00 40.58 4.45
4439 6886 0.326595 TTTCGCAGAGGCATAACCCA 59.673 50.000 0.00 0.00 40.58 4.51
4440 6887 1.459450 TTTTCGCAGAGGCATAACCC 58.541 50.000 0.00 0.00 40.58 4.11
4441 6888 4.095782 TGTTATTTTCGCAGAGGCATAACC 59.904 41.667 0.00 0.00 41.24 2.85
4442 6889 5.028375 GTGTTATTTTCGCAGAGGCATAAC 58.972 41.667 0.00 0.00 41.24 1.89
4443 6890 4.697828 TGTGTTATTTTCGCAGAGGCATAA 59.302 37.500 0.00 0.00 41.24 1.90
4444 6891 4.257731 TGTGTTATTTTCGCAGAGGCATA 58.742 39.130 0.00 0.00 41.24 3.14
4445 6892 3.081061 TGTGTTATTTTCGCAGAGGCAT 58.919 40.909 0.00 0.00 41.24 4.40
4446 6893 2.499197 TGTGTTATTTTCGCAGAGGCA 58.501 42.857 0.00 0.00 41.24 4.75
4447 6894 3.126858 TCATGTGTTATTTTCGCAGAGGC 59.873 43.478 0.00 0.00 38.43 4.70
4448 6895 4.944962 TCATGTGTTATTTTCGCAGAGG 57.055 40.909 0.00 0.00 38.43 3.69
4449 6896 8.894409 TTATTTCATGTGTTATTTTCGCAGAG 57.106 30.769 0.00 0.00 38.43 3.35
4450 6897 9.853555 ATTTATTTCATGTGTTATTTTCGCAGA 57.146 25.926 0.00 0.00 0.00 4.26
4476 6923 9.863845 TGTTCTGTTCGTATACTGAATCATTTA 57.136 29.630 11.47 0.00 37.97 1.40
4477 6924 8.771920 TGTTCTGTTCGTATACTGAATCATTT 57.228 30.769 11.47 0.00 37.97 2.32
4478 6925 8.771920 TTGTTCTGTTCGTATACTGAATCATT 57.228 30.769 11.47 0.00 37.97 2.57
4479 6926 8.771920 TTTGTTCTGTTCGTATACTGAATCAT 57.228 30.769 11.47 0.00 37.97 2.45
4480 6927 8.655970 CATTTGTTCTGTTCGTATACTGAATCA 58.344 33.333 11.47 10.43 37.97 2.57
4481 6928 8.656849 ACATTTGTTCTGTTCGTATACTGAATC 58.343 33.333 11.47 7.64 37.97 2.52
4482 6929 8.443160 CACATTTGTTCTGTTCGTATACTGAAT 58.557 33.333 11.47 0.00 37.97 2.57
4483 6930 7.095397 CCACATTTGTTCTGTTCGTATACTGAA 60.095 37.037 0.56 3.95 34.78 3.02
4484 6931 6.367695 CCACATTTGTTCTGTTCGTATACTGA 59.632 38.462 0.56 0.00 0.00 3.41
4485 6932 6.402118 CCCACATTTGTTCTGTTCGTATACTG 60.402 42.308 0.56 0.00 0.00 2.74
4486 6933 5.642063 CCCACATTTGTTCTGTTCGTATACT 59.358 40.000 0.56 0.00 0.00 2.12
4487 6934 5.640357 TCCCACATTTGTTCTGTTCGTATAC 59.360 40.000 0.00 0.00 0.00 1.47
4488 6935 5.795972 TCCCACATTTGTTCTGTTCGTATA 58.204 37.500 0.00 0.00 0.00 1.47
4489 6936 4.647611 TCCCACATTTGTTCTGTTCGTAT 58.352 39.130 0.00 0.00 0.00 3.06
4490 6937 4.074627 TCCCACATTTGTTCTGTTCGTA 57.925 40.909 0.00 0.00 0.00 3.43
4491 6938 2.925724 TCCCACATTTGTTCTGTTCGT 58.074 42.857 0.00 0.00 0.00 3.85
4492 6939 3.980646 TTCCCACATTTGTTCTGTTCG 57.019 42.857 0.00 0.00 0.00 3.95
4493 6940 5.901552 TCTTTTCCCACATTTGTTCTGTTC 58.098 37.500 0.00 0.00 0.00 3.18
4494 6941 5.930837 TCTTTTCCCACATTTGTTCTGTT 57.069 34.783 0.00 0.00 0.00 3.16
4495 6942 5.930837 TTCTTTTCCCACATTTGTTCTGT 57.069 34.783 0.00 0.00 0.00 3.41
4496 6943 7.548780 TCTTTTTCTTTTCCCACATTTGTTCTG 59.451 33.333 0.00 0.00 0.00 3.02
4497 6944 7.549134 GTCTTTTTCTTTTCCCACATTTGTTCT 59.451 33.333 0.00 0.00 0.00 3.01
4498 6945 7.333174 TGTCTTTTTCTTTTCCCACATTTGTTC 59.667 33.333 0.00 0.00 0.00 3.18
4499 6946 7.164803 TGTCTTTTTCTTTTCCCACATTTGTT 58.835 30.769 0.00 0.00 0.00 2.83
4500 6947 6.706295 TGTCTTTTTCTTTTCCCACATTTGT 58.294 32.000 0.00 0.00 0.00 2.83
4501 6948 7.495279 TCATGTCTTTTTCTTTTCCCACATTTG 59.505 33.333 0.00 0.00 0.00 2.32
4502 6949 7.563906 TCATGTCTTTTTCTTTTCCCACATTT 58.436 30.769 0.00 0.00 0.00 2.32
4503 6950 7.123355 TCATGTCTTTTTCTTTTCCCACATT 57.877 32.000 0.00 0.00 0.00 2.71
4504 6951 6.729690 TCATGTCTTTTTCTTTTCCCACAT 57.270 33.333 0.00 0.00 0.00 3.21
4505 6952 6.154363 AGTTCATGTCTTTTTCTTTTCCCACA 59.846 34.615 0.00 0.00 0.00 4.17
4506 6953 6.573434 AGTTCATGTCTTTTTCTTTTCCCAC 58.427 36.000 0.00 0.00 0.00 4.61
4507 6954 6.607198 AGAGTTCATGTCTTTTTCTTTTCCCA 59.393 34.615 0.00 0.00 0.00 4.37
4508 6955 7.043961 AGAGTTCATGTCTTTTTCTTTTCCC 57.956 36.000 0.00 0.00 0.00 3.97
4509 6956 8.932945 AAAGAGTTCATGTCTTTTTCTTTTCC 57.067 30.769 4.42 0.00 40.61 3.13
4537 6984 9.581099 GTTCATGTTTTAACAAAGAAAAGGAGA 57.419 29.630 12.43 0.00 43.03 3.71
4538 6985 9.586435 AGTTCATGTTTTAACAAAGAAAAGGAG 57.414 29.630 12.43 0.00 43.03 3.69
4555 7002 9.868277 TGTTGAGTTTCAAAAATAGTTCATGTT 57.132 25.926 0.00 0.00 38.22 2.71
4556 7003 9.301153 GTGTTGAGTTTCAAAAATAGTTCATGT 57.699 29.630 0.00 0.00 38.22 3.21
4557 7004 9.520204 AGTGTTGAGTTTCAAAAATAGTTCATG 57.480 29.630 0.00 0.00 38.22 3.07
4559 7006 9.921637 AAAGTGTTGAGTTTCAAAAATAGTTCA 57.078 25.926 0.00 0.00 38.22 3.18
4641 7088 9.884465 TGAAAAACGTTCACAAATTTGAAAAAT 57.116 22.222 24.64 0.00 37.24 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.