Multiple sequence alignment - TraesCS4D01G074100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G074100 chr4D 100.000 5728 0 0 357 6084 48604490 48598763 0.000000e+00 10578.0
1 TraesCS4D01G074100 chr4D 100.000 56 0 0 1 56 48604846 48604791 3.000000e-18 104.0
2 TraesCS4D01G074100 chr4B 93.408 2063 93 23 2387 4425 71348746 71346703 0.000000e+00 3016.0
3 TraesCS4D01G074100 chr4B 95.560 1554 61 5 831 2378 71350521 71348970 0.000000e+00 2481.0
4 TraesCS4D01G074100 chr4B 95.411 632 25 2 5453 6084 71345297 71344670 0.000000e+00 1003.0
5 TraesCS4D01G074100 chr4B 84.818 606 52 23 4685 5282 71345924 71345351 1.900000e-159 573.0
6 TraesCS4D01G074100 chr4B 80.568 458 49 21 360 814 71350916 71350496 3.540000e-82 316.0
7 TraesCS4D01G074100 chr4B 91.026 78 7 0 4603 4680 71346120 71346043 8.340000e-19 106.0
8 TraesCS4D01G074100 chr4B 94.828 58 1 1 1 56 71350986 71350929 8.400000e-14 89.8
9 TraesCS4D01G074100 chr4A 91.956 2101 104 22 2488 4552 548776308 548778379 0.000000e+00 2883.0
10 TraesCS4D01G074100 chr4A 95.882 1530 61 2 832 2360 548774421 548775949 0.000000e+00 2475.0
11 TraesCS4D01G074100 chr4A 94.053 639 31 5 5450 6084 548779271 548779906 0.000000e+00 963.0
12 TraesCS4D01G074100 chr4A 87.573 684 46 18 4605 5282 548778570 548779220 0.000000e+00 756.0
13 TraesCS4D01G074100 chr4A 90.167 478 33 6 361 836 548774001 548774466 1.450000e-170 610.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G074100 chr4D 48598763 48604846 6083 True 5341.000000 10578 100.000000 1 6084 2 chr4D.!!$R1 6083
1 TraesCS4D01G074100 chr4B 71344670 71350986 6316 True 1083.542857 3016 90.802714 1 6084 7 chr4B.!!$R1 6083
2 TraesCS4D01G074100 chr4A 548774001 548779906 5905 False 1537.400000 2883 91.926200 361 6084 5 chr4A.!!$F1 5723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
830 834 0.036732 TGCAATTCTCCTTCCTGCGT 59.963 50.0 0.00 0.00 35.76 5.24 F
1140 1145 0.034670 GGCAGCTGGAAGTCTGGAAT 60.035 55.0 17.12 0.00 38.15 3.01 F
1878 1883 0.320771 TCAACTTTCTCGAGGGCAGC 60.321 55.0 13.56 0.00 0.00 5.25 F
2655 3165 0.815095 TGCTTCAGCTGAATGGCATG 59.185 50.0 29.44 19.02 42.66 4.06 F
3656 4187 0.719465 GCGACTACGGTTTGTCCATG 59.281 55.0 7.90 0.00 40.15 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2385 2390 0.886563 AACGTCCAGTAAGACCTCGG 59.113 55.000 0.0 0.0 32.91 4.63 R
3046 3572 3.623510 GGCTGTAGGAACTTGAATGCTAC 59.376 47.826 0.0 0.0 40.78 3.58 R
3629 4160 2.061740 AACCGTAGTCGCTCAGTTTC 57.938 50.000 0.0 0.0 35.54 2.78 R
4434 5020 1.070601 GCCAACACTGCAATCCCTTTT 59.929 47.619 0.0 0.0 0.00 2.27 R
5404 6681 0.107459 GGCATGGGTTCTCTCCAGTC 60.107 60.000 0.0 0.0 37.75 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
473 476 2.131776 TTGTCGGGTCCAAACAGTTT 57.868 45.000 0.00 0.00 0.00 2.66
474 477 2.131776 TGTCGGGTCCAAACAGTTTT 57.868 45.000 0.00 0.00 0.00 2.43
475 478 3.278668 TGTCGGGTCCAAACAGTTTTA 57.721 42.857 0.00 0.00 0.00 1.52
476 479 2.944349 TGTCGGGTCCAAACAGTTTTAC 59.056 45.455 0.00 0.00 0.00 2.01
536 539 7.392393 GCTAACAAGTAAAAACCATTCCCTCTA 59.608 37.037 0.00 0.00 0.00 2.43
537 540 9.462606 CTAACAAGTAAAAACCATTCCCTCTAT 57.537 33.333 0.00 0.00 0.00 1.98
552 555 9.415544 CATTCCCTCTATTTTTCTTGTTCAAAG 57.584 33.333 0.00 0.00 0.00 2.77
563 566 5.607939 TCTTGTTCAAAGTGGACTAGACA 57.392 39.130 0.00 0.00 0.00 3.41
571 574 5.530915 TCAAAGTGGACTAGACATTGTTTGG 59.469 40.000 0.00 0.00 0.00 3.28
577 580 6.015434 GTGGACTAGACATTGTTTGGGATTTT 60.015 38.462 0.00 0.00 0.00 1.82
578 581 6.015519 TGGACTAGACATTGTTTGGGATTTTG 60.016 38.462 0.00 0.00 0.00 2.44
579 582 5.783111 ACTAGACATTGTTTGGGATTTTGC 58.217 37.500 0.00 0.00 0.00 3.68
580 583 4.961438 AGACATTGTTTGGGATTTTGCT 57.039 36.364 0.00 0.00 0.00 3.91
581 584 4.634199 AGACATTGTTTGGGATTTTGCTG 58.366 39.130 0.00 0.00 0.00 4.41
582 585 3.140623 ACATTGTTTGGGATTTTGCTGC 58.859 40.909 0.00 0.00 0.00 5.25
583 586 2.252976 TTGTTTGGGATTTTGCTGCC 57.747 45.000 0.00 0.00 0.00 4.85
584 587 1.126488 TGTTTGGGATTTTGCTGCCA 58.874 45.000 0.00 0.00 34.45 4.92
587 590 0.762082 TTGGGATTTTGCTGCCACCA 60.762 50.000 0.00 0.00 36.23 4.17
656 659 4.032672 CGAATCAGCTTCTGTGACAGATTC 59.967 45.833 16.98 14.05 40.39 2.52
715 719 5.237048 TGCTTTTGGCCTTCATTATTTCAC 58.763 37.500 3.32 0.00 40.92 3.18
720 724 2.618709 GGCCTTCATTATTTCACCCTCG 59.381 50.000 0.00 0.00 0.00 4.63
759 763 3.243101 TGTTAATTTTCGCGCAGGAAACA 60.243 39.130 8.75 4.95 35.75 2.83
761 765 0.240945 ATTTTCGCGCAGGAAACAGG 59.759 50.000 8.75 0.00 35.75 4.00
762 766 1.098712 TTTTCGCGCAGGAAACAGGT 61.099 50.000 8.75 0.00 35.75 4.00
764 768 3.423154 CGCGCAGGAAACAGGTCC 61.423 66.667 8.75 0.00 38.03 4.46
786 790 6.969473 GTCCTGTAGATCAATAAAAGCAAAGC 59.031 38.462 0.00 0.00 0.00 3.51
798 802 3.615849 AAGCAAAGCTCTTTCAACGAG 57.384 42.857 0.00 0.00 38.25 4.18
825 829 0.455005 GCTGCTGCAATTCTCCTTCC 59.545 55.000 11.11 0.00 39.41 3.46
826 830 1.954258 GCTGCTGCAATTCTCCTTCCT 60.954 52.381 11.11 0.00 39.41 3.36
827 831 1.743958 CTGCTGCAATTCTCCTTCCTG 59.256 52.381 3.02 0.00 0.00 3.86
828 832 0.455005 GCTGCAATTCTCCTTCCTGC 59.545 55.000 0.00 0.00 0.00 4.85
829 833 0.731417 CTGCAATTCTCCTTCCTGCG 59.269 55.000 0.00 0.00 35.76 5.18
830 834 0.036732 TGCAATTCTCCTTCCTGCGT 59.963 50.000 0.00 0.00 35.76 5.24
831 835 1.168714 GCAATTCTCCTTCCTGCGTT 58.831 50.000 0.00 0.00 0.00 4.84
832 836 1.541588 GCAATTCTCCTTCCTGCGTTT 59.458 47.619 0.00 0.00 0.00 3.60
833 837 2.414691 GCAATTCTCCTTCCTGCGTTTC 60.415 50.000 0.00 0.00 0.00 2.78
834 838 2.813754 CAATTCTCCTTCCTGCGTTTCA 59.186 45.455 0.00 0.00 0.00 2.69
835 839 2.631160 TTCTCCTTCCTGCGTTTCAA 57.369 45.000 0.00 0.00 0.00 2.69
836 840 1.878953 TCTCCTTCCTGCGTTTCAAC 58.121 50.000 0.00 0.00 0.00 3.18
902 906 0.689623 AGTCCTGGCTGAAACTCTGG 59.310 55.000 0.00 0.00 0.00 3.86
913 917 2.368875 TGAAACTCTGGAACTCCTGGTC 59.631 50.000 3.12 0.00 35.87 4.02
1119 1124 1.222113 GAAGCAGCTGGAGTACCCC 59.778 63.158 17.12 0.00 34.81 4.95
1140 1145 0.034670 GGCAGCTGGAAGTCTGGAAT 60.035 55.000 17.12 0.00 38.15 3.01
1230 1235 2.731341 CGTTACGGAGCTCAAGATCGTT 60.731 50.000 17.19 3.34 0.00 3.85
1408 1413 0.324943 CCCAGACAAGATTCACCGGT 59.675 55.000 0.00 0.00 0.00 5.28
1446 1451 5.094134 GTGCTTGATCTGAGCTCAAATTTC 58.906 41.667 18.85 12.02 40.75 2.17
1447 1452 5.008331 TGCTTGATCTGAGCTCAAATTTCT 58.992 37.500 18.85 0.00 40.75 2.52
1455 1460 5.649395 TCTGAGCTCAAATTTCTTGTATGGG 59.351 40.000 18.85 0.00 0.00 4.00
1600 1605 2.036571 CGTAACCGGTTGAAGGGGC 61.037 63.158 30.08 9.49 0.00 5.80
1635 1640 4.695455 TCAGTTGGTAAAGCTACAATGCTC 59.305 41.667 0.00 0.00 43.24 4.26
1637 1642 5.048782 CAGTTGGTAAAGCTACAATGCTCAA 60.049 40.000 0.00 0.00 43.24 3.02
1689 1694 2.335712 CGAGGTTCCAGCTTTGGGC 61.336 63.158 0.00 0.00 42.19 5.36
1725 1730 4.868172 TGAGATGTTGGATTTGAGGGAT 57.132 40.909 0.00 0.00 0.00 3.85
1782 1787 1.446907 CATTGGTGACAGTCCTGCTC 58.553 55.000 0.00 0.00 44.54 4.26
1848 1853 1.882623 CTGAAAAGGCTCCAACACCTC 59.117 52.381 0.00 0.00 34.31 3.85
1878 1883 0.320771 TCAACTTTCTCGAGGGCAGC 60.321 55.000 13.56 0.00 0.00 5.25
1911 1916 5.709164 AGAACTCTTTGATCTCCCAAACATG 59.291 40.000 0.00 0.00 33.07 3.21
1918 1923 7.554118 TCTTTGATCTCCCAAACATGAGTTATC 59.446 37.037 0.00 0.00 36.84 1.75
1923 1928 6.962182 TCTCCCAAACATGAGTTATCTGAAT 58.038 36.000 0.00 0.00 36.84 2.57
1954 1959 2.983229 ACATGCTCAGTGGATCACTTC 58.017 47.619 0.00 0.00 42.59 3.01
2004 2009 2.633488 GGCTTTGTGGATCTGTCTACC 58.367 52.381 0.00 0.00 35.17 3.18
2134 2139 5.631119 AGGCTAACTATTGTCAACAACCTT 58.369 37.500 0.00 0.00 38.86 3.50
2137 2142 7.336931 AGGCTAACTATTGTCAACAACCTTATG 59.663 37.037 0.00 0.00 38.86 1.90
2166 2171 1.064166 AGATCAGGCAAGGATGTTGGG 60.064 52.381 0.00 0.00 0.00 4.12
2181 2186 3.681593 TGTTGGGCTTGTGGTTACTATC 58.318 45.455 0.00 0.00 0.00 2.08
2224 2229 8.539770 TGTGCTTGTTCTTTCTCTTCTATTAG 57.460 34.615 0.00 0.00 0.00 1.73
2241 2246 7.156876 TCTATTAGTGGCATCAAACAAAAGG 57.843 36.000 0.00 0.00 0.00 3.11
2259 2264 4.506886 AAGGAACTGTCAGAGAGTTACG 57.493 45.455 15.41 0.00 39.02 3.18
2271 2276 3.128349 GAGAGTTACGGCAGAACAACAA 58.872 45.455 0.00 0.00 0.00 2.83
2378 2383 7.019153 TCCAGTAATATTGCATTTATACCCCCT 59.981 37.037 6.31 0.00 0.00 4.79
2380 2385 8.109634 CAGTAATATTGCATTTATACCCCCTCT 58.890 37.037 6.31 0.00 0.00 3.69
2382 2387 3.876309 TTGCATTTATACCCCCTCTCC 57.124 47.619 0.00 0.00 0.00 3.71
2383 2388 2.062636 TGCATTTATACCCCCTCTCCC 58.937 52.381 0.00 0.00 0.00 4.30
2384 2389 1.354705 GCATTTATACCCCCTCTCCCC 59.645 57.143 0.00 0.00 0.00 4.81
2385 2390 1.993301 CATTTATACCCCCTCTCCCCC 59.007 57.143 0.00 0.00 0.00 5.40
2444 2664 7.243604 TGAATCCCATTGTTTGCTTTTCTAT 57.756 32.000 0.00 0.00 0.00 1.98
2655 3165 0.815095 TGCTTCAGCTGAATGGCATG 59.185 50.000 29.44 19.02 42.66 4.06
2690 3200 7.598869 GGTACTTCCATGTTTTGAAGAAATTCC 59.401 37.037 14.14 6.80 40.30 3.01
2714 3224 6.036083 CCGATATCCTATTTGCAAATACCTCG 59.964 42.308 24.63 22.98 0.00 4.63
2716 3226 3.879998 TCCTATTTGCAAATACCTCGCA 58.120 40.909 24.63 7.91 0.00 5.10
2717 3227 4.265893 TCCTATTTGCAAATACCTCGCAA 58.734 39.130 24.63 7.23 43.52 4.85
2718 3228 4.335315 TCCTATTTGCAAATACCTCGCAAG 59.665 41.667 24.63 15.34 45.58 4.01
2815 3338 1.002468 CTGTGAAGTTTGGGTCGCAAG 60.002 52.381 2.29 0.00 34.07 4.01
3045 3571 8.300286 TCGTAGTGATGCAAATTGGAAAATTTA 58.700 29.630 0.00 0.00 31.67 1.40
3046 3572 8.586273 CGTAGTGATGCAAATTGGAAAATTTAG 58.414 33.333 0.00 0.00 31.67 1.85
3073 3599 5.431765 CATTCAAGTTCCTACAGCCATACT 58.568 41.667 0.00 0.00 0.00 2.12
3074 3600 6.582636 CATTCAAGTTCCTACAGCCATACTA 58.417 40.000 0.00 0.00 0.00 1.82
3075 3601 6.808321 TTCAAGTTCCTACAGCCATACTAT 57.192 37.500 0.00 0.00 0.00 2.12
3076 3602 6.808321 TCAAGTTCCTACAGCCATACTATT 57.192 37.500 0.00 0.00 0.00 1.73
3298 3829 2.411547 GCACTGTATTGACAACGCAGTC 60.412 50.000 18.20 12.10 45.00 3.51
3390 3921 4.903049 TCTTTCTGGTAAGGAACTACACCA 59.097 41.667 0.00 0.00 46.97 4.17
3629 4160 3.181498 TGCTTGATGAACACCATATTGCG 60.181 43.478 0.00 0.00 35.17 4.85
3656 4187 0.719465 GCGACTACGGTTTGTCCATG 59.281 55.000 7.90 0.00 40.15 3.66
3751 4283 8.637986 TCCCCTATTTTTAATACATGTGCATTC 58.362 33.333 9.11 0.00 0.00 2.67
3781 4313 4.965814 TCCATGCTTGTTTTTAATGCCAA 58.034 34.783 0.00 0.00 0.00 4.52
3784 4316 7.164122 TCCATGCTTGTTTTTAATGCCAATAA 58.836 30.769 0.00 0.00 0.00 1.40
4048 4590 2.762327 AGCACTTATGGGCTCCAAATTG 59.238 45.455 0.00 0.00 36.95 2.32
4107 4650 1.440618 TGTGTCCCCCTCTTGCTTTA 58.559 50.000 0.00 0.00 0.00 1.85
4195 4753 8.729805 TCAATATGCTTGTTTTCTTGGTTTTT 57.270 26.923 0.00 0.00 0.00 1.94
4201 4759 7.680062 TGCTTGTTTTCTTGGTTTTTATTTCG 58.320 30.769 0.00 0.00 0.00 3.46
4205 4763 8.202745 TGTTTTCTTGGTTTTTATTTCGCAAT 57.797 26.923 0.00 0.00 0.00 3.56
4220 4778 3.342719 TCGCAATGATTTCACAAGCCTA 58.657 40.909 0.00 0.00 0.00 3.93
4230 4788 7.648142 TGATTTCACAAGCCTACAGTAAAAAG 58.352 34.615 0.00 0.00 0.00 2.27
4234 4792 7.817418 TCACAAGCCTACAGTAAAAAGAAAT 57.183 32.000 0.00 0.00 0.00 2.17
4249 4807 6.529463 AAAAGAAATTGATTTCACAAGCCG 57.471 33.333 16.34 0.00 46.50 5.52
4292 4850 5.661503 TCCATCCATGCCCTTTTAGAATA 57.338 39.130 0.00 0.00 0.00 1.75
4324 4882 3.434309 AGAAGGCCCGTACTACTGTTTA 58.566 45.455 0.00 0.00 0.00 2.01
4335 4893 7.656137 CCCGTACTACTGTTTATATGCTTCATT 59.344 37.037 0.00 0.00 0.00 2.57
4429 5015 7.151999 TGGTTATAACACAATTACTTGCCTG 57.848 36.000 17.16 0.00 35.69 4.85
4434 5020 1.617850 CACAATTACTTGCCTGCCCAA 59.382 47.619 0.00 0.00 35.69 4.12
4491 5078 5.136105 AGATATTTGGGAGTGAAAGCATCC 58.864 41.667 0.00 0.00 0.00 3.51
4492 5079 2.673775 TTTGGGAGTGAAAGCATCCA 57.326 45.000 0.00 0.00 34.62 3.41
4493 5080 2.673775 TTGGGAGTGAAAGCATCCAA 57.326 45.000 0.00 0.00 34.62 3.53
4494 5081 1.909700 TGGGAGTGAAAGCATCCAAC 58.090 50.000 0.00 0.00 34.62 3.77
4553 5145 4.710375 TGGTCTGTCCACTAAGAGATTACC 59.290 45.833 0.00 0.00 41.93 2.85
4554 5146 4.957327 GGTCTGTCCACTAAGAGATTACCT 59.043 45.833 0.00 0.00 35.97 3.08
4555 5147 5.068067 GGTCTGTCCACTAAGAGATTACCTC 59.932 48.000 0.00 0.00 37.92 3.85
4556 5148 7.086397 GGTCTGTCCACTAAGAGATTACCTCT 61.086 46.154 0.00 0.00 44.13 3.69
4557 5149 9.027205 GGTCTGTCCACTAAGAGATTACCTCTG 62.027 48.148 0.00 0.00 42.73 3.35
4699 5952 7.434897 CAGAGAAGCTCATACAGAATTCAGTAC 59.565 40.741 12.36 1.38 32.06 2.73
4716 5969 5.790593 TCAGTACCCTGACTAATTTGTCAC 58.209 41.667 17.14 8.59 42.80 3.67
4780 6033 6.365839 CAGCATGGATACGCTTTATTTGTAG 58.634 40.000 0.00 0.00 35.96 2.74
4781 6034 6.017934 CAGCATGGATACGCTTTATTTGTAGT 60.018 38.462 0.00 0.00 35.96 2.73
4921 6178 2.502492 CGGGACCTCATCGCAGGAT 61.502 63.158 2.23 0.00 40.30 3.24
4966 6223 2.476619 CACGATCAAATGCCTATCCGTC 59.523 50.000 0.00 0.00 0.00 4.79
5008 6265 3.369892 CCATCGAAGAGGTTCTGTGGAAT 60.370 47.826 0.00 0.00 43.63 3.01
5089 6346 0.110056 CGCAAGCCTGTTAGCACAAG 60.110 55.000 0.00 0.00 34.23 3.16
5090 6347 0.954452 GCAAGCCTGTTAGCACAAGT 59.046 50.000 0.00 0.00 34.23 3.16
5103 6379 1.680735 GCACAAGTGAAACCATGACCA 59.319 47.619 4.04 0.00 37.80 4.02
5104 6380 2.287788 GCACAAGTGAAACCATGACCAG 60.288 50.000 4.04 0.00 37.80 4.00
5105 6381 1.956477 ACAAGTGAAACCATGACCAGC 59.044 47.619 0.00 0.00 37.80 4.85
5106 6382 1.955778 CAAGTGAAACCATGACCAGCA 59.044 47.619 0.00 0.00 37.80 4.41
5107 6383 1.901591 AGTGAAACCATGACCAGCAG 58.098 50.000 0.00 0.00 37.80 4.24
5108 6384 1.421268 AGTGAAACCATGACCAGCAGA 59.579 47.619 0.00 0.00 37.80 4.26
5109 6385 2.158623 AGTGAAACCATGACCAGCAGAA 60.159 45.455 0.00 0.00 37.80 3.02
5110 6386 2.622942 GTGAAACCATGACCAGCAGAAA 59.377 45.455 0.00 0.00 0.00 2.52
5111 6387 2.622942 TGAAACCATGACCAGCAGAAAC 59.377 45.455 0.00 0.00 0.00 2.78
5112 6388 1.620822 AACCATGACCAGCAGAAACC 58.379 50.000 0.00 0.00 0.00 3.27
5113 6389 0.478072 ACCATGACCAGCAGAAACCA 59.522 50.000 0.00 0.00 0.00 3.67
5114 6390 1.133513 ACCATGACCAGCAGAAACCAA 60.134 47.619 0.00 0.00 0.00 3.67
5115 6391 1.542915 CCATGACCAGCAGAAACCAAG 59.457 52.381 0.00 0.00 0.00 3.61
5116 6392 1.542915 CATGACCAGCAGAAACCAAGG 59.457 52.381 0.00 0.00 0.00 3.61
5117 6393 0.178992 TGACCAGCAGAAACCAAGGG 60.179 55.000 0.00 0.00 0.00 3.95
5118 6394 0.110486 GACCAGCAGAAACCAAGGGA 59.890 55.000 0.00 0.00 0.00 4.20
5119 6395 0.555769 ACCAGCAGAAACCAAGGGAA 59.444 50.000 0.00 0.00 0.00 3.97
5120 6396 1.251251 CCAGCAGAAACCAAGGGAAG 58.749 55.000 0.00 0.00 0.00 3.46
5121 6397 1.202927 CCAGCAGAAACCAAGGGAAGA 60.203 52.381 0.00 0.00 0.00 2.87
5122 6398 2.556114 CCAGCAGAAACCAAGGGAAGAT 60.556 50.000 0.00 0.00 0.00 2.40
5123 6399 2.490903 CAGCAGAAACCAAGGGAAGATG 59.509 50.000 0.00 0.00 0.00 2.90
5124 6400 2.376518 AGCAGAAACCAAGGGAAGATGA 59.623 45.455 0.00 0.00 0.00 2.92
5125 6401 2.489722 GCAGAAACCAAGGGAAGATGAC 59.510 50.000 0.00 0.00 0.00 3.06
5126 6402 2.744202 CAGAAACCAAGGGAAGATGACG 59.256 50.000 0.00 0.00 0.00 4.35
5127 6403 2.637872 AGAAACCAAGGGAAGATGACGA 59.362 45.455 0.00 0.00 0.00 4.20
5128 6404 2.474410 AACCAAGGGAAGATGACGAC 57.526 50.000 0.00 0.00 0.00 4.34
5129 6405 0.613777 ACCAAGGGAAGATGACGACC 59.386 55.000 0.00 0.00 0.00 4.79
5130 6406 0.613260 CCAAGGGAAGATGACGACCA 59.387 55.000 0.00 0.00 0.00 4.02
5131 6407 1.003118 CCAAGGGAAGATGACGACCAA 59.997 52.381 0.00 0.00 0.00 3.67
5132 6408 2.350522 CAAGGGAAGATGACGACCAAG 58.649 52.381 0.00 0.00 0.00 3.61
5149 6425 4.043200 GGGCCGTTTGCTCAGCAC 62.043 66.667 0.00 0.00 41.53 4.40
5154 6430 1.518056 CCGTTTGCTCAGCACACCAT 61.518 55.000 10.39 0.00 38.71 3.55
5155 6431 0.386352 CGTTTGCTCAGCACACCATG 60.386 55.000 10.39 0.00 38.71 3.66
5156 6432 0.953727 GTTTGCTCAGCACACCATGA 59.046 50.000 4.44 0.00 38.71 3.07
5157 6433 1.337703 GTTTGCTCAGCACACCATGAA 59.662 47.619 4.44 0.00 38.71 2.57
5158 6434 1.689984 TTGCTCAGCACACCATGAAA 58.310 45.000 0.00 0.00 38.71 2.69
5159 6435 1.913778 TGCTCAGCACACCATGAAAT 58.086 45.000 0.00 0.00 31.71 2.17
5182 6458 9.914131 AAATGGAAATGACTAAGCTAACTTTTC 57.086 29.630 0.00 0.00 37.33 2.29
5202 6478 0.368907 GCATTGCGCATTTGCTCAAG 59.631 50.000 28.59 6.27 46.91 3.02
5204 6480 1.917955 CATTGCGCATTTGCTCAAGAG 59.082 47.619 12.75 5.43 46.91 2.85
5216 6492 5.818136 TTGCTCAAGAGGCATTTGTATAC 57.182 39.130 0.00 0.00 39.54 1.47
5219 6495 4.823989 GCTCAAGAGGCATTTGTATACCAT 59.176 41.667 0.00 0.00 0.00 3.55
5240 6516 5.336213 CCATTACAGATTGATTAGCATGGCC 60.336 44.000 0.00 0.00 0.00 5.36
5251 6527 0.822164 AGCATGGCCAATTTCTGCTC 59.178 50.000 22.29 0.00 38.78 4.26
5263 6540 3.988379 TTTCTGCTCGTTTTTGCATCT 57.012 38.095 0.00 0.00 38.59 2.90
5266 6543 5.627499 TTCTGCTCGTTTTTGCATCTTAT 57.373 34.783 0.00 0.00 38.59 1.73
5277 6554 7.692291 CGTTTTTGCATCTTATGTTACTAGTGG 59.308 37.037 5.39 0.00 0.00 4.00
5281 6558 8.630054 TTGCATCTTATGTTACTAGTGGTTTT 57.370 30.769 5.39 0.00 0.00 2.43
5282 6559 8.630054 TGCATCTTATGTTACTAGTGGTTTTT 57.370 30.769 5.39 0.00 0.00 1.94
5310 6587 8.407064 ACTCTTGATAAGTCTTCTACGTATTGG 58.593 37.037 0.00 0.00 33.55 3.16
5311 6588 8.515695 TCTTGATAAGTCTTCTACGTATTGGA 57.484 34.615 0.00 0.00 33.55 3.53
5312 6589 8.622157 TCTTGATAAGTCTTCTACGTATTGGAG 58.378 37.037 0.00 0.00 33.55 3.86
5313 6590 7.876936 TGATAAGTCTTCTACGTATTGGAGT 57.123 36.000 0.00 0.00 33.55 3.85
5314 6591 8.289939 TGATAAGTCTTCTACGTATTGGAGTT 57.710 34.615 0.00 6.46 33.55 3.01
5316 6593 9.881529 GATAAGTCTTCTACGTATTGGAGTTAG 57.118 37.037 16.57 0.00 33.55 2.34
5318 6595 7.556733 AGTCTTCTACGTATTGGAGTTAGAG 57.443 40.000 0.00 0.00 0.00 2.43
5319 6596 6.038492 AGTCTTCTACGTATTGGAGTTAGAGC 59.962 42.308 0.00 0.00 0.00 4.09
5321 6598 4.194640 TCTACGTATTGGAGTTAGAGCGT 58.805 43.478 0.00 0.00 35.49 5.07
5323 6600 3.508762 ACGTATTGGAGTTAGAGCGTTG 58.491 45.455 0.00 0.00 0.00 4.10
5325 6602 3.924686 CGTATTGGAGTTAGAGCGTTGTT 59.075 43.478 0.00 0.00 0.00 2.83
5326 6603 4.031426 CGTATTGGAGTTAGAGCGTTGTTC 59.969 45.833 0.00 0.00 0.00 3.18
5327 6604 3.746045 TTGGAGTTAGAGCGTTGTTCT 57.254 42.857 0.00 0.00 0.00 3.01
5328 6605 4.859304 TTGGAGTTAGAGCGTTGTTCTA 57.141 40.909 0.00 0.00 0.00 2.10
5329 6606 4.436242 TGGAGTTAGAGCGTTGTTCTAG 57.564 45.455 0.00 0.00 28.02 2.43
5331 6608 3.367087 GGAGTTAGAGCGTTGTTCTAGCA 60.367 47.826 7.14 0.00 31.45 3.49
5332 6609 3.576648 AGTTAGAGCGTTGTTCTAGCAC 58.423 45.455 7.14 0.00 31.45 4.40
5333 6610 3.256136 AGTTAGAGCGTTGTTCTAGCACT 59.744 43.478 7.14 0.13 31.45 4.40
5334 6611 4.458295 AGTTAGAGCGTTGTTCTAGCACTA 59.542 41.667 7.14 0.00 31.45 2.74
5335 6612 3.936372 AGAGCGTTGTTCTAGCACTAA 57.064 42.857 0.00 0.00 30.50 2.24
5336 6613 3.839293 AGAGCGTTGTTCTAGCACTAAG 58.161 45.455 0.00 0.00 30.50 2.18
5337 6614 2.338500 AGCGTTGTTCTAGCACTAAGC 58.662 47.619 6.75 6.75 46.19 3.09
5349 6626 2.625737 GCACTAAGCATCTTCTGAGCA 58.374 47.619 0.00 0.00 44.79 4.26
5350 6627 3.204526 GCACTAAGCATCTTCTGAGCAT 58.795 45.455 0.00 0.00 44.79 3.79
5351 6628 3.626670 GCACTAAGCATCTTCTGAGCATT 59.373 43.478 0.00 0.00 44.79 3.56
5352 6629 4.496010 GCACTAAGCATCTTCTGAGCATTG 60.496 45.833 0.00 0.00 44.79 2.82
5353 6630 4.035324 CACTAAGCATCTTCTGAGCATTGG 59.965 45.833 0.00 0.00 0.00 3.16
5354 6631 2.803030 AGCATCTTCTGAGCATTGGT 57.197 45.000 0.00 0.00 0.00 3.67
5355 6632 2.366533 AGCATCTTCTGAGCATTGGTG 58.633 47.619 0.00 0.00 0.00 4.17
5367 6644 3.893326 GCATTGGTGCCCTTCTTTTAT 57.107 42.857 0.00 0.00 45.76 1.40
5368 6645 3.785486 GCATTGGTGCCCTTCTTTTATC 58.215 45.455 0.00 0.00 45.76 1.75
5369 6646 3.195396 GCATTGGTGCCCTTCTTTTATCA 59.805 43.478 0.00 0.00 45.76 2.15
5370 6647 4.322650 GCATTGGTGCCCTTCTTTTATCAA 60.323 41.667 0.00 0.00 45.76 2.57
5371 6648 5.413499 CATTGGTGCCCTTCTTTTATCAAG 58.587 41.667 0.00 0.00 0.00 3.02
5372 6649 4.380843 TGGTGCCCTTCTTTTATCAAGA 57.619 40.909 0.00 0.00 0.00 3.02
5373 6650 4.934356 TGGTGCCCTTCTTTTATCAAGAT 58.066 39.130 0.00 0.00 0.00 2.40
5374 6651 5.332743 TGGTGCCCTTCTTTTATCAAGATT 58.667 37.500 0.00 0.00 0.00 2.40
5375 6652 5.418840 TGGTGCCCTTCTTTTATCAAGATTC 59.581 40.000 0.00 0.00 0.00 2.52
5376 6653 5.418840 GGTGCCCTTCTTTTATCAAGATTCA 59.581 40.000 0.00 0.00 0.00 2.57
5377 6654 6.071391 GGTGCCCTTCTTTTATCAAGATTCAA 60.071 38.462 0.00 0.00 0.00 2.69
5378 6655 7.031975 GTGCCCTTCTTTTATCAAGATTCAAG 58.968 38.462 0.00 0.00 0.00 3.02
5379 6656 6.038985 GCCCTTCTTTTATCAAGATTCAAGC 58.961 40.000 0.00 0.00 0.00 4.01
5380 6657 6.261118 CCCTTCTTTTATCAAGATTCAAGCG 58.739 40.000 0.00 0.00 0.00 4.68
5381 6658 6.127897 CCCTTCTTTTATCAAGATTCAAGCGT 60.128 38.462 0.00 0.00 0.00 5.07
5382 6659 6.963805 CCTTCTTTTATCAAGATTCAAGCGTC 59.036 38.462 0.00 0.00 0.00 5.19
5383 6660 7.361201 CCTTCTTTTATCAAGATTCAAGCGTCA 60.361 37.037 0.00 0.00 0.00 4.35
5384 6661 7.615582 TCTTTTATCAAGATTCAAGCGTCAT 57.384 32.000 0.00 0.00 0.00 3.06
5385 6662 7.688372 TCTTTTATCAAGATTCAAGCGTCATC 58.312 34.615 0.00 0.00 0.00 2.92
5386 6663 5.991328 TTATCAAGATTCAAGCGTCATCC 57.009 39.130 0.00 0.00 0.00 3.51
5387 6664 3.616956 TCAAGATTCAAGCGTCATCCT 57.383 42.857 0.00 0.00 0.00 3.24
5388 6665 3.942829 TCAAGATTCAAGCGTCATCCTT 58.057 40.909 0.00 0.00 0.00 3.36
5389 6666 3.935203 TCAAGATTCAAGCGTCATCCTTC 59.065 43.478 0.00 0.00 0.00 3.46
5390 6667 3.616956 AGATTCAAGCGTCATCCTTCA 57.383 42.857 0.00 0.00 0.00 3.02
5391 6668 3.942829 AGATTCAAGCGTCATCCTTCAA 58.057 40.909 0.00 0.00 0.00 2.69
5392 6669 4.326826 AGATTCAAGCGTCATCCTTCAAA 58.673 39.130 0.00 0.00 0.00 2.69
5393 6670 4.761739 AGATTCAAGCGTCATCCTTCAAAA 59.238 37.500 0.00 0.00 0.00 2.44
5394 6671 5.416952 AGATTCAAGCGTCATCCTTCAAAAT 59.583 36.000 0.00 0.00 0.00 1.82
5395 6672 6.599244 AGATTCAAGCGTCATCCTTCAAAATA 59.401 34.615 0.00 0.00 0.00 1.40
5396 6673 5.545658 TCAAGCGTCATCCTTCAAAATAC 57.454 39.130 0.00 0.00 0.00 1.89
5397 6674 4.394920 TCAAGCGTCATCCTTCAAAATACC 59.605 41.667 0.00 0.00 0.00 2.73
5398 6675 3.950397 AGCGTCATCCTTCAAAATACCA 58.050 40.909 0.00 0.00 0.00 3.25
5399 6676 4.331968 AGCGTCATCCTTCAAAATACCAA 58.668 39.130 0.00 0.00 0.00 3.67
5400 6677 4.156008 AGCGTCATCCTTCAAAATACCAAC 59.844 41.667 0.00 0.00 0.00 3.77
5401 6678 4.647964 CGTCATCCTTCAAAATACCAACG 58.352 43.478 0.00 0.00 0.00 4.10
5402 6679 4.412207 GTCATCCTTCAAAATACCAACGC 58.588 43.478 0.00 0.00 0.00 4.84
5403 6680 4.075682 TCATCCTTCAAAATACCAACGCA 58.924 39.130 0.00 0.00 0.00 5.24
5404 6681 4.155826 TCATCCTTCAAAATACCAACGCAG 59.844 41.667 0.00 0.00 0.00 5.18
5405 6682 3.745799 TCCTTCAAAATACCAACGCAGA 58.254 40.909 0.00 0.00 0.00 4.26
5406 6683 3.500680 TCCTTCAAAATACCAACGCAGAC 59.499 43.478 0.00 0.00 0.00 3.51
5407 6684 3.502211 CCTTCAAAATACCAACGCAGACT 59.498 43.478 0.00 0.00 0.00 3.24
5408 6685 4.466828 CTTCAAAATACCAACGCAGACTG 58.533 43.478 0.00 0.00 0.00 3.51
5409 6686 2.811431 TCAAAATACCAACGCAGACTGG 59.189 45.455 4.26 0.00 39.33 4.00
5410 6687 2.811431 CAAAATACCAACGCAGACTGGA 59.189 45.455 4.26 0.00 37.45 3.86
5411 6688 2.386661 AATACCAACGCAGACTGGAG 57.613 50.000 4.26 0.00 37.45 3.86
5412 6689 1.557099 ATACCAACGCAGACTGGAGA 58.443 50.000 4.26 0.00 37.45 3.71
5413 6690 0.888619 TACCAACGCAGACTGGAGAG 59.111 55.000 4.26 0.00 37.45 3.20
5414 6691 0.827925 ACCAACGCAGACTGGAGAGA 60.828 55.000 4.26 0.00 37.45 3.10
5415 6692 0.318441 CCAACGCAGACTGGAGAGAA 59.682 55.000 4.26 0.00 36.42 2.87
5416 6693 1.423395 CAACGCAGACTGGAGAGAAC 58.577 55.000 4.26 0.00 0.00 3.01
5417 6694 0.318762 AACGCAGACTGGAGAGAACC 59.681 55.000 4.26 0.00 0.00 3.62
5418 6695 1.216710 CGCAGACTGGAGAGAACCC 59.783 63.158 4.26 0.00 0.00 4.11
5419 6696 1.536073 CGCAGACTGGAGAGAACCCA 61.536 60.000 4.26 0.00 0.00 4.51
5420 6697 0.908198 GCAGACTGGAGAGAACCCAT 59.092 55.000 4.26 0.00 32.49 4.00
5421 6698 1.406614 GCAGACTGGAGAGAACCCATG 60.407 57.143 4.26 0.00 32.49 3.66
5422 6699 0.908198 AGACTGGAGAGAACCCATGC 59.092 55.000 0.00 0.00 32.49 4.06
5423 6700 0.107459 GACTGGAGAGAACCCATGCC 60.107 60.000 0.00 0.00 32.49 4.40
5424 6701 0.548682 ACTGGAGAGAACCCATGCCT 60.549 55.000 0.00 0.00 32.49 4.75
5425 6702 1.273838 ACTGGAGAGAACCCATGCCTA 60.274 52.381 0.00 0.00 32.49 3.93
5426 6703 1.839994 CTGGAGAGAACCCATGCCTAA 59.160 52.381 0.00 0.00 32.49 2.69
5427 6704 1.559682 TGGAGAGAACCCATGCCTAAC 59.440 52.381 0.00 0.00 0.00 2.34
5428 6705 1.559682 GGAGAGAACCCATGCCTAACA 59.440 52.381 0.00 0.00 0.00 2.41
5429 6706 2.026262 GGAGAGAACCCATGCCTAACAA 60.026 50.000 0.00 0.00 0.00 2.83
5430 6707 3.372025 GGAGAGAACCCATGCCTAACAAT 60.372 47.826 0.00 0.00 0.00 2.71
5431 6708 4.273318 GAGAGAACCCATGCCTAACAATT 58.727 43.478 0.00 0.00 0.00 2.32
5432 6709 4.019174 AGAGAACCCATGCCTAACAATTG 58.981 43.478 3.24 3.24 0.00 2.32
5433 6710 4.016444 GAGAACCCATGCCTAACAATTGA 58.984 43.478 13.59 0.00 0.00 2.57
5434 6711 4.415596 AGAACCCATGCCTAACAATTGAA 58.584 39.130 13.59 0.00 0.00 2.69
5435 6712 4.463891 AGAACCCATGCCTAACAATTGAAG 59.536 41.667 13.59 8.87 0.00 3.02
5436 6713 2.497273 ACCCATGCCTAACAATTGAAGC 59.503 45.455 13.59 9.34 0.00 3.86
5437 6714 2.496871 CCCATGCCTAACAATTGAAGCA 59.503 45.455 13.59 14.51 34.28 3.91
5438 6715 3.133362 CCCATGCCTAACAATTGAAGCAT 59.867 43.478 13.59 16.01 41.40 3.79
5439 6716 4.383335 CCCATGCCTAACAATTGAAGCATT 60.383 41.667 13.59 0.00 38.82 3.56
5440 6717 5.180271 CCATGCCTAACAATTGAAGCATTT 58.820 37.500 13.59 0.00 38.82 2.32
5441 6718 5.644636 CCATGCCTAACAATTGAAGCATTTT 59.355 36.000 13.59 0.00 38.82 1.82
5442 6719 6.149807 CCATGCCTAACAATTGAAGCATTTTT 59.850 34.615 13.59 0.00 38.82 1.94
5443 6720 6.783892 TGCCTAACAATTGAAGCATTTTTC 57.216 33.333 13.59 0.00 0.00 2.29
5444 6721 6.286758 TGCCTAACAATTGAAGCATTTTTCA 58.713 32.000 13.59 0.00 35.38 2.69
5446 6723 7.041916 TGCCTAACAATTGAAGCATTTTTCAAG 60.042 33.333 13.59 0.00 46.70 3.02
5447 6724 7.041848 GCCTAACAATTGAAGCATTTTTCAAGT 60.042 33.333 13.59 2.16 46.70 3.16
5448 6725 9.474920 CCTAACAATTGAAGCATTTTTCAAGTA 57.525 29.630 13.59 0.00 46.70 2.24
5467 6744 6.369615 TCAAGTATTAACCTCGTTACAAAGGC 59.630 38.462 1.25 0.00 36.01 4.35
5489 6766 1.569708 ATTTGGCAAACGCACACTTG 58.430 45.000 16.00 0.00 0.00 3.16
5503 6780 5.472137 ACGCACACTTGGAAACAGTAATATT 59.528 36.000 0.00 0.00 44.54 1.28
5505 6782 7.173562 ACGCACACTTGGAAACAGTAATATTAA 59.826 33.333 0.00 0.00 44.54 1.40
5527 6804 8.575649 TTAACTACTGACATCATACTGAGTGA 57.424 34.615 0.00 0.00 0.00 3.41
5543 6821 6.279123 ACTGAGTGAAGTGCTACATGATATG 58.721 40.000 0.00 0.00 0.00 1.78
5563 6841 9.971744 TGATATGATAAAACATGATAAATCGCG 57.028 29.630 0.00 0.00 0.00 5.87
5628 6906 1.003476 TGCGCAATGAGGAGCTCAA 60.003 52.632 17.19 0.14 44.04 3.02
5708 6986 1.039785 TGAGAGATGAGAGGCCACGG 61.040 60.000 5.01 0.00 0.00 4.94
5745 7026 3.799420 GTGCTACAGCTTATTCTTCCTCG 59.201 47.826 2.44 0.00 42.66 4.63
5855 7136 7.812309 TGTCAGTATCTACAGAAAACAATCG 57.188 36.000 0.00 0.00 0.00 3.34
5856 7137 7.599171 TGTCAGTATCTACAGAAAACAATCGA 58.401 34.615 0.00 0.00 0.00 3.59
5857 7138 7.755373 TGTCAGTATCTACAGAAAACAATCGAG 59.245 37.037 0.00 0.00 0.00 4.04
5858 7139 7.755822 GTCAGTATCTACAGAAAACAATCGAGT 59.244 37.037 0.00 0.00 0.00 4.18
5859 7140 8.304596 TCAGTATCTACAGAAAACAATCGAGTT 58.695 33.333 0.00 0.00 0.00 3.01
5860 7141 8.926710 CAGTATCTACAGAAAACAATCGAGTTT 58.073 33.333 0.00 0.00 43.13 2.66
5952 7235 7.027778 ACAAGAACAATCAGTTTACTTGGTC 57.972 36.000 0.00 0.00 42.18 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
473 476 3.181449 TGAAGGTGCAGGCTTGTAAGTAA 60.181 43.478 0.00 0.00 0.00 2.24
474 477 2.370519 TGAAGGTGCAGGCTTGTAAGTA 59.629 45.455 0.00 0.00 0.00 2.24
475 478 1.142870 TGAAGGTGCAGGCTTGTAAGT 59.857 47.619 0.00 0.00 0.00 2.24
476 479 1.896220 TGAAGGTGCAGGCTTGTAAG 58.104 50.000 0.00 0.00 0.00 2.34
526 529 9.415544 CTTTGAACAAGAAAAATAGAGGGAATG 57.584 33.333 0.00 0.00 0.00 2.67
536 539 8.406297 GTCTAGTCCACTTTGAACAAGAAAAAT 58.594 33.333 0.00 0.00 0.00 1.82
537 540 7.392113 TGTCTAGTCCACTTTGAACAAGAAAAA 59.608 33.333 0.00 0.00 0.00 1.94
552 555 4.015872 TCCCAAACAATGTCTAGTCCAC 57.984 45.455 0.00 0.00 0.00 4.02
563 566 2.106166 TGGCAGCAAAATCCCAAACAAT 59.894 40.909 0.00 0.00 0.00 2.71
571 574 1.079612 GCTGGTGGCAGCAAAATCC 60.080 57.895 20.97 0.49 46.73 3.01
581 584 2.283472 CTATTTTGGCGGCTGGTGGC 62.283 60.000 11.43 0.00 40.90 5.01
582 585 0.965363 ACTATTTTGGCGGCTGGTGG 60.965 55.000 11.43 0.00 0.00 4.61
583 586 0.887933 AACTATTTTGGCGGCTGGTG 59.112 50.000 11.43 0.00 0.00 4.17
584 587 1.272212 CAAACTATTTTGGCGGCTGGT 59.728 47.619 11.43 0.00 38.82 4.00
606 609 1.219646 TCGCTCACCGTAAAAACACC 58.780 50.000 0.00 0.00 38.35 4.16
671 674 7.847711 AGCATATGTGTCTTACTCTTATCCT 57.152 36.000 4.29 0.00 0.00 3.24
675 679 7.065803 GCCAAAAGCATATGTGTCTTACTCTTA 59.934 37.037 4.29 0.00 42.97 2.10
676 680 6.127897 GCCAAAAGCATATGTGTCTTACTCTT 60.128 38.462 4.29 0.00 42.97 2.85
677 681 5.355350 GCCAAAAGCATATGTGTCTTACTCT 59.645 40.000 4.29 0.00 42.97 3.24
678 682 5.449177 GGCCAAAAGCATATGTGTCTTACTC 60.449 44.000 0.00 0.00 46.50 2.59
679 683 4.399303 GGCCAAAAGCATATGTGTCTTACT 59.601 41.667 0.00 0.00 46.50 2.24
680 684 4.399303 AGGCCAAAAGCATATGTGTCTTAC 59.601 41.667 5.01 0.00 46.50 2.34
691 695 5.876460 GTGAAATAATGAAGGCCAAAAGCAT 59.124 36.000 5.01 0.00 46.50 3.79
715 719 5.411669 ACAATTTTCAGTAAGTTAGCGAGGG 59.588 40.000 0.00 0.00 0.00 4.30
759 763 6.313519 TGCTTTTATTGATCTACAGGACCT 57.686 37.500 0.00 0.00 0.00 3.85
761 765 6.969473 GCTTTGCTTTTATTGATCTACAGGAC 59.031 38.462 0.00 0.00 0.00 3.85
762 766 6.886459 AGCTTTGCTTTTATTGATCTACAGGA 59.114 34.615 0.00 0.00 33.89 3.86
764 768 7.983307 AGAGCTTTGCTTTTATTGATCTACAG 58.017 34.615 0.00 0.00 39.88 2.74
765 769 7.928307 AGAGCTTTGCTTTTATTGATCTACA 57.072 32.000 0.00 0.00 39.88 2.74
766 770 9.283420 GAAAGAGCTTTGCTTTTATTGATCTAC 57.717 33.333 0.00 0.00 39.88 2.59
767 771 9.013229 TGAAAGAGCTTTGCTTTTATTGATCTA 57.987 29.630 0.00 0.00 39.88 1.98
806 810 0.455005 GGAAGGAGAATTGCAGCAGC 59.545 55.000 0.00 0.00 42.57 5.25
807 811 1.743958 CAGGAAGGAGAATTGCAGCAG 59.256 52.381 0.00 0.00 0.00 4.24
808 812 1.830279 CAGGAAGGAGAATTGCAGCA 58.170 50.000 0.00 0.00 0.00 4.41
809 813 0.455005 GCAGGAAGGAGAATTGCAGC 59.545 55.000 0.00 0.00 34.99 5.25
810 814 0.731417 CGCAGGAAGGAGAATTGCAG 59.269 55.000 0.00 0.00 34.56 4.41
811 815 0.036732 ACGCAGGAAGGAGAATTGCA 59.963 50.000 0.00 0.00 34.56 4.08
812 816 1.168714 AACGCAGGAAGGAGAATTGC 58.831 50.000 0.00 0.00 0.00 3.56
813 817 2.813754 TGAAACGCAGGAAGGAGAATTG 59.186 45.455 0.00 0.00 0.00 2.32
814 818 3.140325 TGAAACGCAGGAAGGAGAATT 57.860 42.857 0.00 0.00 0.00 2.17
815 819 2.814336 GTTGAAACGCAGGAAGGAGAAT 59.186 45.455 0.00 0.00 0.00 2.40
816 820 2.218603 GTTGAAACGCAGGAAGGAGAA 58.781 47.619 0.00 0.00 0.00 2.87
817 821 1.872237 CGTTGAAACGCAGGAAGGAGA 60.872 52.381 2.23 0.00 46.06 3.71
818 822 0.512952 CGTTGAAACGCAGGAAGGAG 59.487 55.000 2.23 0.00 46.06 3.69
819 823 2.612200 CGTTGAAACGCAGGAAGGA 58.388 52.632 2.23 0.00 46.06 3.36
840 844 2.597305 GAGAATCGCAGCAGCAAAATTG 59.403 45.455 0.82 0.00 42.27 2.32
841 845 2.416431 GGAGAATCGCAGCAGCAAAATT 60.416 45.455 0.82 0.00 42.27 1.82
842 846 1.133790 GGAGAATCGCAGCAGCAAAAT 59.866 47.619 0.82 0.00 42.27 1.82
843 847 0.523072 GGAGAATCGCAGCAGCAAAA 59.477 50.000 0.82 0.00 42.27 2.44
844 848 0.606130 TGGAGAATCGCAGCAGCAAA 60.606 50.000 0.82 0.00 42.27 3.68
845 849 1.003476 TGGAGAATCGCAGCAGCAA 60.003 52.632 0.82 0.00 42.27 3.91
902 906 3.003480 CCAATTTCTCGACCAGGAGTTC 58.997 50.000 0.00 0.00 35.52 3.01
913 917 4.084013 AGTTGTACGCTTTCCAATTTCTCG 60.084 41.667 0.00 0.00 0.00 4.04
1021 1026 3.168035 ACAGGTTATGGCCATCACAAA 57.832 42.857 27.14 12.85 0.00 2.83
1119 1124 1.376942 CCAGACTTCCAGCTGCCTG 60.377 63.158 8.66 9.36 38.85 4.85
1392 1397 2.368875 AGACAACCGGTGAATCTTGTCT 59.631 45.455 24.91 24.91 45.13 3.41
1408 1413 1.953559 AGCACTTGAAGCGAAGACAA 58.046 45.000 0.00 0.00 37.01 3.18
1455 1460 1.066587 CAGCTTCGGAGGGATCGAC 59.933 63.158 0.00 0.00 36.30 4.20
1479 1484 0.179097 GGGTCTGAAGCCTCGACATC 60.179 60.000 8.75 0.00 40.09 3.06
1600 1605 2.795329 ACCAACTGAAGCTGGTATTGG 58.205 47.619 15.14 15.14 42.25 3.16
1635 1640 1.416813 CGGCAAGAGCTAGCTCGTTG 61.417 60.000 33.31 32.21 46.90 4.10
1637 1642 2.492090 CGGCAAGAGCTAGCTCGT 59.508 61.111 33.31 29.37 46.90 4.18
1725 1730 4.338682 GGAAGCTCTCCATCTAACTCGTTA 59.661 45.833 9.31 0.00 44.67 3.18
1782 1787 3.057736 CACCCTTGAATGAGTTCTTGCTG 60.058 47.826 0.00 0.00 35.33 4.41
1848 1853 5.335935 TCGAGAAAGTTGAATGAGAGATCG 58.664 41.667 0.00 0.00 0.00 3.69
1881 1886 4.512484 GGAGATCAAAGAGTTCTTCAGGG 58.488 47.826 0.00 0.00 34.61 4.45
1911 1916 3.137533 GGCTGCCAGATTCAGATAACTC 58.862 50.000 15.17 0.00 33.54 3.01
1918 1923 1.134367 CATGTTGGCTGCCAGATTCAG 59.866 52.381 22.17 7.43 33.81 3.02
1923 1928 1.676635 GAGCATGTTGGCTGCCAGA 60.677 57.895 22.17 13.02 45.99 3.86
1954 1959 3.000041 TGCTGCATGTTAAACTACTCGG 59.000 45.455 0.00 0.00 0.00 4.63
2004 2009 1.156736 GGTCACCTGTGATTCGGTTG 58.843 55.000 2.91 0.00 42.18 3.77
2134 2139 2.090550 TGCCTGATCTTCTCCCCTCATA 60.091 50.000 0.00 0.00 0.00 2.15
2137 2142 1.140652 CTTGCCTGATCTTCTCCCCTC 59.859 57.143 0.00 0.00 0.00 4.30
2181 2186 2.789339 CACAATCAGCACTATACCGACG 59.211 50.000 0.00 0.00 0.00 5.12
2224 2229 3.803778 CAGTTCCTTTTGTTTGATGCCAC 59.196 43.478 0.00 0.00 0.00 5.01
2241 2246 2.030185 TGCCGTAACTCTCTGACAGTTC 60.030 50.000 1.43 0.00 35.63 3.01
2259 2264 1.142474 GCAGCAATTGTTGTTCTGCC 58.858 50.000 21.37 2.39 42.98 4.85
2382 2387 1.001248 TCCAGTAAGACCTCGGGGG 59.999 63.158 6.13 0.00 41.89 5.40
2383 2388 1.664321 CGTCCAGTAAGACCTCGGGG 61.664 65.000 0.00 0.00 38.88 5.73
2384 2389 0.964358 ACGTCCAGTAAGACCTCGGG 60.964 60.000 0.00 0.00 32.91 5.14
2385 2390 0.886563 AACGTCCAGTAAGACCTCGG 59.113 55.000 0.00 0.00 32.91 4.63
2444 2664 4.377635 GCTAACTCCACGCATTTTCGTAAA 60.378 41.667 0.00 0.00 41.21 2.01
2690 3200 6.455646 GCGAGGTATTTGCAAATAGGATATCG 60.456 42.308 28.00 27.24 36.12 2.92
2720 3230 9.959749 TGACACCAAATAAAGAAGTAAAATGTC 57.040 29.630 0.00 0.00 0.00 3.06
2721 3231 9.744468 GTGACACCAAATAAAGAAGTAAAATGT 57.256 29.630 0.00 0.00 0.00 2.71
2722 3232 9.965824 AGTGACACCAAATAAAGAAGTAAAATG 57.034 29.630 0.84 0.00 0.00 2.32
3000 3526 7.898309 CACTACGAAGTCAAGTAATTATGTTGC 59.102 37.037 0.00 3.03 43.93 4.17
3045 3571 4.508662 GCTGTAGGAACTTGAATGCTACT 58.491 43.478 6.73 0.00 40.93 2.57
3046 3572 3.623510 GGCTGTAGGAACTTGAATGCTAC 59.376 47.826 0.00 0.00 40.78 3.58
3064 3590 5.468592 TGCAACACAAAAATAGTATGGCTG 58.531 37.500 0.00 0.00 0.00 4.85
3073 3599 7.493971 AGCTGTAACAAATGCAACACAAAAATA 59.506 29.630 0.00 0.00 0.00 1.40
3074 3600 6.315891 AGCTGTAACAAATGCAACACAAAAAT 59.684 30.769 0.00 0.00 0.00 1.82
3075 3601 5.641209 AGCTGTAACAAATGCAACACAAAAA 59.359 32.000 0.00 0.00 0.00 1.94
3076 3602 5.174395 AGCTGTAACAAATGCAACACAAAA 58.826 33.333 0.00 0.00 0.00 2.44
3298 3829 4.755123 ACCCTTTTTACACTTGACTCATCG 59.245 41.667 0.00 0.00 0.00 3.84
3445 3976 4.628333 CCAAGAAAGGCATGCACAAATAAG 59.372 41.667 21.36 2.47 0.00 1.73
3629 4160 2.061740 AACCGTAGTCGCTCAGTTTC 57.938 50.000 0.00 0.00 35.54 2.78
3656 4187 8.363390 TCATGTTTGTATATCTCCTCTGTGATC 58.637 37.037 0.00 0.00 0.00 2.92
3751 4283 9.037737 CATTAAAAACAAGCATGGATTATCCTG 57.962 33.333 12.91 9.15 37.46 3.86
3781 4313 6.926630 TTGCCTGTAAACCCAAAGAATTAT 57.073 33.333 0.00 0.00 0.00 1.28
3784 4316 5.422012 CCTATTGCCTGTAAACCCAAAGAAT 59.578 40.000 0.00 0.00 0.00 2.40
4176 4734 7.675170 GCGAAATAAAAACCAAGAAAACAAGCA 60.675 33.333 0.00 0.00 0.00 3.91
4195 4753 5.101628 GGCTTGTGAAATCATTGCGAAATA 58.898 37.500 0.00 0.00 0.00 1.40
4201 4759 4.082571 ACTGTAGGCTTGTGAAATCATTGC 60.083 41.667 0.00 0.00 0.00 3.56
4205 4763 7.500892 TCTTTTTACTGTAGGCTTGTGAAATCA 59.499 33.333 0.00 0.00 0.00 2.57
4249 4807 8.738645 ATGGAAAAACATAGGATTAGAGTCAC 57.261 34.615 0.00 0.00 0.00 3.67
4256 4814 6.267471 GGCATGGATGGAAAAACATAGGATTA 59.733 38.462 0.00 0.00 0.00 1.75
4292 4850 2.048603 GGCCTTCTTTGGAGCGCAT 61.049 57.895 11.47 0.00 0.00 4.73
4335 4893 7.614192 GGAAACCCCATTTTCTCTAGTTATCAA 59.386 37.037 0.00 0.00 36.02 2.57
4345 4903 4.610333 ACCATAGGAAACCCCATTTTCTC 58.390 43.478 0.00 0.00 37.34 2.87
4352 4910 4.542525 AGTGATAAACCATAGGAAACCCCA 59.457 41.667 0.00 0.00 37.41 4.96
4353 4911 4.887655 CAGTGATAAACCATAGGAAACCCC 59.112 45.833 0.00 0.00 0.00 4.95
4393 4952 8.804688 TTGTGTTATAACCATGTTAGCAAAAC 57.195 30.769 13.01 0.76 0.00 2.43
4434 5020 1.070601 GCCAACACTGCAATCCCTTTT 59.929 47.619 0.00 0.00 0.00 2.27
4555 5147 9.859427 TGATAATTATTTTCTTGGCAACTTCAG 57.141 29.630 0.00 0.00 37.61 3.02
4556 5148 9.859427 CTGATAATTATTTTCTTGGCAACTTCA 57.141 29.630 0.00 0.00 37.61 3.02
4601 5193 7.957002 AGCTTACTGCATATGTCTACTACATT 58.043 34.615 4.29 0.00 44.91 2.71
4624 5763 7.970061 TCATGCATTTAACAGATCACTTTTAGC 59.030 33.333 0.00 0.00 0.00 3.09
4716 5969 1.927174 CCTTAGCCGAAACACTGATCG 59.073 52.381 0.00 0.00 38.74 3.69
4767 6020 9.901724 CTCATAAGTGTTACTACAAATAAAGCG 57.098 33.333 0.00 0.00 35.69 4.68
4773 6026 8.542497 TTTCGCTCATAAGTGTTACTACAAAT 57.458 30.769 0.00 0.00 35.69 2.32
4822 6077 7.734924 CTGCAGATACAGGCAAATATTTCTA 57.265 36.000 8.42 0.00 39.93 2.10
4921 6178 2.224523 GGAGACCACCATTGACAGTGAA 60.225 50.000 0.00 0.00 36.01 3.18
5089 6346 1.896220 TCTGCTGGTCATGGTTTCAC 58.104 50.000 0.00 0.00 0.00 3.18
5090 6347 2.622942 GTTTCTGCTGGTCATGGTTTCA 59.377 45.455 0.00 0.00 0.00 2.69
5103 6379 2.376518 TCATCTTCCCTTGGTTTCTGCT 59.623 45.455 0.00 0.00 0.00 4.24
5104 6380 2.489722 GTCATCTTCCCTTGGTTTCTGC 59.510 50.000 0.00 0.00 0.00 4.26
5105 6381 2.744202 CGTCATCTTCCCTTGGTTTCTG 59.256 50.000 0.00 0.00 0.00 3.02
5106 6382 2.637872 TCGTCATCTTCCCTTGGTTTCT 59.362 45.455 0.00 0.00 0.00 2.52
5107 6383 2.742589 GTCGTCATCTTCCCTTGGTTTC 59.257 50.000 0.00 0.00 0.00 2.78
5108 6384 2.552373 GGTCGTCATCTTCCCTTGGTTT 60.552 50.000 0.00 0.00 0.00 3.27
5109 6385 1.003233 GGTCGTCATCTTCCCTTGGTT 59.997 52.381 0.00 0.00 0.00 3.67
5110 6386 0.613777 GGTCGTCATCTTCCCTTGGT 59.386 55.000 0.00 0.00 0.00 3.67
5111 6387 0.613260 TGGTCGTCATCTTCCCTTGG 59.387 55.000 0.00 0.00 0.00 3.61
5112 6388 2.350522 CTTGGTCGTCATCTTCCCTTG 58.649 52.381 0.00 0.00 0.00 3.61
5113 6389 1.279271 CCTTGGTCGTCATCTTCCCTT 59.721 52.381 0.00 0.00 0.00 3.95
5114 6390 0.905357 CCTTGGTCGTCATCTTCCCT 59.095 55.000 0.00 0.00 0.00 4.20
5115 6391 0.107654 CCCTTGGTCGTCATCTTCCC 60.108 60.000 0.00 0.00 0.00 3.97
5116 6392 0.744771 GCCCTTGGTCGTCATCTTCC 60.745 60.000 0.00 0.00 0.00 3.46
5117 6393 0.744771 GGCCCTTGGTCGTCATCTTC 60.745 60.000 0.00 0.00 0.00 2.87
5118 6394 1.299976 GGCCCTTGGTCGTCATCTT 59.700 57.895 0.00 0.00 0.00 2.40
5119 6395 2.990479 GGCCCTTGGTCGTCATCT 59.010 61.111 0.00 0.00 0.00 2.90
5120 6396 2.511600 CGGCCCTTGGTCGTCATC 60.512 66.667 0.00 0.00 46.58 2.92
5126 6402 2.597510 AGCAAACGGCCCTTGGTC 60.598 61.111 10.39 0.00 46.50 4.02
5127 6403 2.597510 GAGCAAACGGCCCTTGGT 60.598 61.111 14.94 14.94 46.50 3.67
5128 6404 2.597217 TGAGCAAACGGCCCTTGG 60.597 61.111 12.85 0.00 46.50 3.61
5129 6405 2.956987 CTGAGCAAACGGCCCTTG 59.043 61.111 0.00 1.97 46.50 3.61
5130 6406 2.985847 GCTGAGCAAACGGCCCTT 60.986 61.111 0.00 0.00 46.50 3.95
5131 6407 4.269523 TGCTGAGCAAACGGCCCT 62.270 61.111 3.81 0.00 46.50 5.19
5132 6408 4.043200 GTGCTGAGCAAACGGCCC 62.043 66.667 9.51 0.00 46.50 5.80
5154 6430 8.635765 AAGTTAGCTTAGTCATTTCCATTTCA 57.364 30.769 0.00 0.00 32.27 2.69
5155 6431 9.914131 AAAAGTTAGCTTAGTCATTTCCATTTC 57.086 29.630 0.00 0.00 33.95 2.17
5156 6432 9.914131 GAAAAGTTAGCTTAGTCATTTCCATTT 57.086 29.630 0.00 0.00 33.95 2.32
5157 6433 8.237267 CGAAAAGTTAGCTTAGTCATTTCCATT 58.763 33.333 0.00 0.00 33.95 3.16
5158 6434 7.626452 GCGAAAAGTTAGCTTAGTCATTTCCAT 60.626 37.037 0.00 0.00 33.95 3.41
5159 6435 6.348213 GCGAAAAGTTAGCTTAGTCATTTCCA 60.348 38.462 0.00 0.00 33.95 3.53
5201 6477 7.136822 TCTGTAATGGTATACAAATGCCTCT 57.863 36.000 5.01 0.00 38.60 3.69
5202 6478 7.986085 ATCTGTAATGGTATACAAATGCCTC 57.014 36.000 5.01 0.00 38.60 4.70
5204 6480 8.165239 TCAATCTGTAATGGTATACAAATGCC 57.835 34.615 5.01 0.00 38.30 4.40
5216 6492 5.336213 GGCCATGCTAATCAATCTGTAATGG 60.336 44.000 0.00 0.00 0.00 3.16
5219 6495 4.790937 TGGCCATGCTAATCAATCTGTAA 58.209 39.130 0.00 0.00 0.00 2.41
5237 6513 2.438868 AAAACGAGCAGAAATTGGCC 57.561 45.000 0.00 0.00 0.00 5.36
5240 6516 4.682860 AGATGCAAAAACGAGCAGAAATTG 59.317 37.500 0.00 0.00 44.94 2.32
5251 6527 7.692291 CCACTAGTAACATAAGATGCAAAAACG 59.308 37.037 0.00 0.00 0.00 3.60
5286 6563 8.515695 TCCAATACGTAGAAGACTTATCAAGA 57.484 34.615 0.08 0.00 0.00 3.02
5287 6564 8.407064 ACTCCAATACGTAGAAGACTTATCAAG 58.593 37.037 0.08 0.00 0.00 3.02
5288 6565 8.289939 ACTCCAATACGTAGAAGACTTATCAA 57.710 34.615 0.08 0.00 0.00 2.57
5290 6567 9.881529 CTAACTCCAATACGTAGAAGACTTATC 57.118 37.037 0.08 0.00 0.00 1.75
5292 6569 9.107177 CTCTAACTCCAATACGTAGAAGACTTA 57.893 37.037 0.08 0.00 0.00 2.24
5293 6570 7.415429 GCTCTAACTCCAATACGTAGAAGACTT 60.415 40.741 0.08 0.00 0.00 3.01
5295 6572 6.200808 GCTCTAACTCCAATACGTAGAAGAC 58.799 44.000 0.08 0.00 0.00 3.01
5296 6573 5.007430 CGCTCTAACTCCAATACGTAGAAGA 59.993 44.000 0.08 0.00 0.00 2.87
5297 6574 5.206299 CGCTCTAACTCCAATACGTAGAAG 58.794 45.833 0.08 0.00 0.00 2.85
5298 6575 4.637534 ACGCTCTAACTCCAATACGTAGAA 59.362 41.667 0.08 0.00 0.00 2.10
5299 6576 4.194640 ACGCTCTAACTCCAATACGTAGA 58.805 43.478 0.08 0.00 0.00 2.59
5300 6577 4.548991 ACGCTCTAACTCCAATACGTAG 57.451 45.455 0.08 0.00 0.00 3.51
5301 6578 4.156556 ACAACGCTCTAACTCCAATACGTA 59.843 41.667 0.00 0.00 31.43 3.57
5302 6579 3.057033 ACAACGCTCTAACTCCAATACGT 60.057 43.478 0.00 0.00 0.00 3.57
5304 6581 5.169295 AGAACAACGCTCTAACTCCAATAC 58.831 41.667 0.00 0.00 0.00 1.89
5305 6582 5.401531 AGAACAACGCTCTAACTCCAATA 57.598 39.130 0.00 0.00 0.00 1.90
5306 6583 4.273148 AGAACAACGCTCTAACTCCAAT 57.727 40.909 0.00 0.00 0.00 3.16
5310 6587 3.608939 GTGCTAGAACAACGCTCTAACTC 59.391 47.826 0.00 0.00 0.00 3.01
5311 6588 3.256136 AGTGCTAGAACAACGCTCTAACT 59.744 43.478 3.00 0.00 0.00 2.24
5312 6589 3.576648 AGTGCTAGAACAACGCTCTAAC 58.423 45.455 3.00 0.00 0.00 2.34
5313 6590 3.936372 AGTGCTAGAACAACGCTCTAA 57.064 42.857 3.00 0.00 0.00 2.10
5314 6591 4.674623 GCTTAGTGCTAGAACAACGCTCTA 60.675 45.833 3.00 0.00 38.95 2.43
5316 6593 2.345942 GCTTAGTGCTAGAACAACGCTC 59.654 50.000 3.00 0.00 38.95 5.03
5318 6595 2.066262 TGCTTAGTGCTAGAACAACGC 58.934 47.619 3.00 2.60 43.37 4.84
5319 6596 4.177026 AGATGCTTAGTGCTAGAACAACG 58.823 43.478 3.00 0.00 43.37 4.10
5321 6598 5.871524 CAGAAGATGCTTAGTGCTAGAACAA 59.128 40.000 3.00 0.00 43.37 2.83
5323 6600 5.655488 TCAGAAGATGCTTAGTGCTAGAAC 58.345 41.667 0.00 0.00 43.37 3.01
5325 6602 4.202101 GCTCAGAAGATGCTTAGTGCTAGA 60.202 45.833 0.00 0.00 43.37 2.43
5326 6603 4.050553 GCTCAGAAGATGCTTAGTGCTAG 58.949 47.826 0.00 0.00 43.37 3.42
5327 6604 3.448660 TGCTCAGAAGATGCTTAGTGCTA 59.551 43.478 0.00 0.00 43.37 3.49
5328 6605 2.235650 TGCTCAGAAGATGCTTAGTGCT 59.764 45.455 0.00 0.00 43.37 4.40
5329 6606 2.625737 TGCTCAGAAGATGCTTAGTGC 58.374 47.619 0.00 0.00 43.25 4.40
5331 6608 4.197750 CCAATGCTCAGAAGATGCTTAGT 58.802 43.478 0.00 0.00 0.00 2.24
5332 6609 4.035324 CACCAATGCTCAGAAGATGCTTAG 59.965 45.833 0.00 0.00 0.00 2.18
5333 6610 3.943381 CACCAATGCTCAGAAGATGCTTA 59.057 43.478 0.00 0.00 0.00 3.09
5334 6611 2.753452 CACCAATGCTCAGAAGATGCTT 59.247 45.455 0.00 0.00 0.00 3.91
5335 6612 2.366533 CACCAATGCTCAGAAGATGCT 58.633 47.619 0.00 0.00 0.00 3.79
5336 6613 2.846039 CACCAATGCTCAGAAGATGC 57.154 50.000 0.00 0.00 0.00 3.91
5353 6630 6.515272 TGAATCTTGATAAAAGAAGGGCAC 57.485 37.500 0.00 0.00 0.00 5.01
5354 6631 6.350445 GCTTGAATCTTGATAAAAGAAGGGCA 60.350 38.462 8.49 0.00 0.00 5.36
5355 6632 6.038985 GCTTGAATCTTGATAAAAGAAGGGC 58.961 40.000 8.49 0.00 0.00 5.19
5356 6633 6.127897 ACGCTTGAATCTTGATAAAAGAAGGG 60.128 38.462 0.00 0.00 0.00 3.95
5357 6634 6.846350 ACGCTTGAATCTTGATAAAAGAAGG 58.154 36.000 8.49 2.29 0.00 3.46
5358 6635 7.521529 TGACGCTTGAATCTTGATAAAAGAAG 58.478 34.615 8.49 0.00 0.00 2.85
5359 6636 7.433708 TGACGCTTGAATCTTGATAAAAGAA 57.566 32.000 8.49 0.00 0.00 2.52
5360 6637 7.201644 GGATGACGCTTGAATCTTGATAAAAGA 60.202 37.037 8.49 0.00 0.00 2.52
5361 6638 6.909357 GGATGACGCTTGAATCTTGATAAAAG 59.091 38.462 0.00 0.00 0.00 2.27
5362 6639 6.599244 AGGATGACGCTTGAATCTTGATAAAA 59.401 34.615 0.00 0.00 0.00 1.52
5363 6640 6.115446 AGGATGACGCTTGAATCTTGATAAA 58.885 36.000 0.00 0.00 0.00 1.40
5364 6641 5.674525 AGGATGACGCTTGAATCTTGATAA 58.325 37.500 0.00 0.00 0.00 1.75
5365 6642 5.282055 AGGATGACGCTTGAATCTTGATA 57.718 39.130 0.00 0.00 0.00 2.15
5366 6643 4.148128 AGGATGACGCTTGAATCTTGAT 57.852 40.909 0.00 0.00 0.00 2.57
5367 6644 3.616956 AGGATGACGCTTGAATCTTGA 57.383 42.857 0.00 0.00 0.00 3.02
5368 6645 3.686241 TGAAGGATGACGCTTGAATCTTG 59.314 43.478 0.00 0.00 0.00 3.02
5369 6646 3.942829 TGAAGGATGACGCTTGAATCTT 58.057 40.909 0.00 0.00 0.00 2.40
5370 6647 3.616956 TGAAGGATGACGCTTGAATCT 57.383 42.857 0.00 0.00 0.00 2.40
5371 6648 4.685169 TTTGAAGGATGACGCTTGAATC 57.315 40.909 0.00 0.00 0.00 2.52
5372 6649 5.649782 ATTTTGAAGGATGACGCTTGAAT 57.350 34.783 0.00 0.00 0.00 2.57
5373 6650 5.106317 GGTATTTTGAAGGATGACGCTTGAA 60.106 40.000 0.00 0.00 0.00 2.69
5374 6651 4.394920 GGTATTTTGAAGGATGACGCTTGA 59.605 41.667 0.00 0.00 0.00 3.02
5375 6652 4.155826 TGGTATTTTGAAGGATGACGCTTG 59.844 41.667 0.00 0.00 0.00 4.01
5376 6653 4.331968 TGGTATTTTGAAGGATGACGCTT 58.668 39.130 0.00 0.00 0.00 4.68
5377 6654 3.950397 TGGTATTTTGAAGGATGACGCT 58.050 40.909 0.00 0.00 0.00 5.07
5378 6655 4.412207 GTTGGTATTTTGAAGGATGACGC 58.588 43.478 0.00 0.00 0.00 5.19
5379 6656 4.647964 CGTTGGTATTTTGAAGGATGACG 58.352 43.478 0.00 0.00 0.00 4.35
5380 6657 4.083003 TGCGTTGGTATTTTGAAGGATGAC 60.083 41.667 0.00 0.00 0.00 3.06
5381 6658 4.075682 TGCGTTGGTATTTTGAAGGATGA 58.924 39.130 0.00 0.00 0.00 2.92
5382 6659 4.155826 TCTGCGTTGGTATTTTGAAGGATG 59.844 41.667 0.00 0.00 0.00 3.51
5383 6660 4.156008 GTCTGCGTTGGTATTTTGAAGGAT 59.844 41.667 0.00 0.00 0.00 3.24
5384 6661 3.500680 GTCTGCGTTGGTATTTTGAAGGA 59.499 43.478 0.00 0.00 0.00 3.36
5385 6662 3.502211 AGTCTGCGTTGGTATTTTGAAGG 59.498 43.478 0.00 0.00 0.00 3.46
5386 6663 4.466828 CAGTCTGCGTTGGTATTTTGAAG 58.533 43.478 0.00 0.00 0.00 3.02
5387 6664 3.252215 CCAGTCTGCGTTGGTATTTTGAA 59.748 43.478 0.00 0.00 0.00 2.69
5388 6665 2.811431 CCAGTCTGCGTTGGTATTTTGA 59.189 45.455 0.00 0.00 0.00 2.69
5389 6666 2.811431 TCCAGTCTGCGTTGGTATTTTG 59.189 45.455 0.00 0.00 35.89 2.44
5390 6667 3.074412 CTCCAGTCTGCGTTGGTATTTT 58.926 45.455 0.00 0.00 35.89 1.82
5391 6668 2.301870 TCTCCAGTCTGCGTTGGTATTT 59.698 45.455 0.00 0.00 35.89 1.40
5392 6669 1.899814 TCTCCAGTCTGCGTTGGTATT 59.100 47.619 0.00 0.00 35.89 1.89
5393 6670 1.478510 CTCTCCAGTCTGCGTTGGTAT 59.521 52.381 0.00 0.00 35.89 2.73
5394 6671 0.888619 CTCTCCAGTCTGCGTTGGTA 59.111 55.000 0.00 0.00 35.89 3.25
5395 6672 0.827925 TCTCTCCAGTCTGCGTTGGT 60.828 55.000 0.00 0.00 35.89 3.67
5396 6673 0.318441 TTCTCTCCAGTCTGCGTTGG 59.682 55.000 0.00 0.00 35.74 3.77
5397 6674 1.423395 GTTCTCTCCAGTCTGCGTTG 58.577 55.000 0.00 0.00 0.00 4.10
5398 6675 0.318762 GGTTCTCTCCAGTCTGCGTT 59.681 55.000 0.00 0.00 0.00 4.84
5399 6676 1.536943 GGGTTCTCTCCAGTCTGCGT 61.537 60.000 0.00 0.00 0.00 5.24
5400 6677 1.216710 GGGTTCTCTCCAGTCTGCG 59.783 63.158 0.00 0.00 0.00 5.18
5401 6678 0.908198 ATGGGTTCTCTCCAGTCTGC 59.092 55.000 0.00 0.00 37.75 4.26
5402 6679 1.406614 GCATGGGTTCTCTCCAGTCTG 60.407 57.143 0.00 0.00 37.75 3.51
5403 6680 0.908198 GCATGGGTTCTCTCCAGTCT 59.092 55.000 0.00 0.00 37.75 3.24
5404 6681 0.107459 GGCATGGGTTCTCTCCAGTC 60.107 60.000 0.00 0.00 37.75 3.51
5405 6682 0.548682 AGGCATGGGTTCTCTCCAGT 60.549 55.000 0.00 0.00 37.75 4.00
5406 6683 1.500474 TAGGCATGGGTTCTCTCCAG 58.500 55.000 0.00 0.00 37.75 3.86
5407 6684 1.559682 GTTAGGCATGGGTTCTCTCCA 59.440 52.381 0.00 0.00 38.82 3.86
5408 6685 1.559682 TGTTAGGCATGGGTTCTCTCC 59.440 52.381 0.00 0.00 0.00 3.71
5409 6686 3.350219 TTGTTAGGCATGGGTTCTCTC 57.650 47.619 0.00 0.00 0.00 3.20
5410 6687 4.019174 CAATTGTTAGGCATGGGTTCTCT 58.981 43.478 0.00 0.00 0.00 3.10
5411 6688 4.016444 TCAATTGTTAGGCATGGGTTCTC 58.984 43.478 5.13 0.00 0.00 2.87
5412 6689 4.046286 TCAATTGTTAGGCATGGGTTCT 57.954 40.909 5.13 0.00 0.00 3.01
5413 6690 4.747810 CTTCAATTGTTAGGCATGGGTTC 58.252 43.478 5.13 0.00 0.00 3.62
5414 6691 3.055891 GCTTCAATTGTTAGGCATGGGTT 60.056 43.478 5.13 0.00 0.00 4.11
5415 6692 2.497273 GCTTCAATTGTTAGGCATGGGT 59.503 45.455 5.13 0.00 0.00 4.51
5416 6693 2.496871 TGCTTCAATTGTTAGGCATGGG 59.503 45.455 5.13 0.00 0.00 4.00
5417 6694 3.872511 TGCTTCAATTGTTAGGCATGG 57.127 42.857 5.13 0.00 0.00 3.66
5418 6695 6.730960 AAAATGCTTCAATTGTTAGGCATG 57.269 33.333 14.80 0.00 39.78 4.06
5419 6696 6.935771 TGAAAAATGCTTCAATTGTTAGGCAT 59.064 30.769 9.97 9.97 41.30 4.40
5420 6697 6.286758 TGAAAAATGCTTCAATTGTTAGGCA 58.713 32.000 5.13 5.88 32.39 4.75
5421 6698 6.783892 TGAAAAATGCTTCAATTGTTAGGC 57.216 33.333 5.13 0.00 32.39 3.93
5422 6699 8.369218 ACTTGAAAAATGCTTCAATTGTTAGG 57.631 30.769 5.13 0.00 42.78 2.69
5430 6707 9.691362 GAGGTTAATACTTGAAAAATGCTTCAA 57.309 29.630 0.00 0.00 41.80 2.69
5431 6708 8.020819 CGAGGTTAATACTTGAAAAATGCTTCA 58.979 33.333 0.00 0.00 33.48 3.02
5432 6709 8.021396 ACGAGGTTAATACTTGAAAAATGCTTC 58.979 33.333 0.00 0.00 0.00 3.86
5433 6710 7.882179 ACGAGGTTAATACTTGAAAAATGCTT 58.118 30.769 0.00 0.00 0.00 3.91
5434 6711 7.448748 ACGAGGTTAATACTTGAAAAATGCT 57.551 32.000 0.00 0.00 0.00 3.79
5435 6712 9.058424 GTAACGAGGTTAATACTTGAAAAATGC 57.942 33.333 0.00 0.00 29.42 3.56
5440 6717 8.776470 CCTTTGTAACGAGGTTAATACTTGAAA 58.224 33.333 0.00 0.00 29.42 2.69
5441 6718 7.095102 GCCTTTGTAACGAGGTTAATACTTGAA 60.095 37.037 0.00 0.00 35.42 2.69
5442 6719 6.369615 GCCTTTGTAACGAGGTTAATACTTGA 59.630 38.462 0.00 0.00 35.42 3.02
5443 6720 6.148150 TGCCTTTGTAACGAGGTTAATACTTG 59.852 38.462 0.00 0.00 35.42 3.16
5444 6721 6.232692 TGCCTTTGTAACGAGGTTAATACTT 58.767 36.000 0.00 0.00 35.42 2.24
5445 6722 5.797051 TGCCTTTGTAACGAGGTTAATACT 58.203 37.500 0.00 0.00 35.42 2.12
5446 6723 6.484818 TTGCCTTTGTAACGAGGTTAATAC 57.515 37.500 0.00 0.00 35.42 1.89
5447 6724 7.690952 ATTTGCCTTTGTAACGAGGTTAATA 57.309 32.000 0.00 0.00 35.42 0.98
5448 6725 6.584185 ATTTGCCTTTGTAACGAGGTTAAT 57.416 33.333 0.00 0.00 35.42 1.40
5451 6728 4.929819 AATTTGCCTTTGTAACGAGGTT 57.070 36.364 0.00 0.00 35.42 3.50
5467 6744 1.932511 AGTGTGCGTTTGCCAAATTTG 59.067 42.857 11.40 11.40 41.78 2.32
5479 6756 2.319136 TACTGTTTCCAAGTGTGCGT 57.681 45.000 0.00 0.00 0.00 5.24
5481 6758 8.512138 AGTTAATATTACTGTTTCCAAGTGTGC 58.488 33.333 0.00 0.00 0.00 4.57
5543 6821 8.469125 GGTTTTCGCGATTTATCATGTTTTATC 58.531 33.333 10.88 0.00 0.00 1.75
5552 6830 4.452795 TGAACAGGTTTTCGCGATTTATCA 59.547 37.500 10.88 4.31 0.00 2.15
5563 6841 0.316689 CGCCGTGTGAACAGGTTTTC 60.317 55.000 2.79 0.00 0.00 2.29
5708 6986 5.460419 GCTGTAGCACATTGTATGTCTAGAC 59.540 44.000 16.32 16.32 42.70 2.59
5952 7235 3.039202 GCTGGGATCGTTTGCCGTG 62.039 63.158 0.00 0.00 39.08 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.