Multiple sequence alignment - TraesCS4D01G073100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G073100 chr4D 100.000 3386 0 0 1 3386 47749041 47745656 0.000000e+00 6253.0
1 TraesCS4D01G073100 chr4D 100.000 32 0 0 2600 2631 47746411 47746442 3.650000e-05 60.2
2 TraesCS4D01G073100 chr4B 92.911 2398 106 29 1 2386 70057951 70055606 0.000000e+00 3428.0
3 TraesCS4D01G073100 chr4B 94.037 218 8 2 2403 2619 70055534 70055321 3.260000e-85 326.0
4 TraesCS4D01G073100 chr4A 94.493 2052 83 14 579 2619 549922278 549924310 0.000000e+00 3136.0
5 TraesCS4D01G073100 chr4A 89.159 535 35 11 1 525 549921748 549922269 0.000000e+00 645.0
6 TraesCS4D01G073100 chr4A 79.259 270 47 8 243 508 577754669 577754405 2.680000e-41 180.0
7 TraesCS4D01G073100 chr6D 100.000 174 0 0 2641 2814 422295192 422295365 4.210000e-84 322.0
8 TraesCS4D01G073100 chr6D 78.909 275 50 7 243 514 446534580 446534849 2.680000e-41 180.0
9 TraesCS4D01G073100 chr6D 90.826 109 9 1 2706 2813 422294833 422294725 9.790000e-31 145.0
10 TraesCS4D01G073100 chr7D 83.631 336 36 11 3068 3386 123492404 123492071 7.100000e-77 298.0
11 TraesCS4D01G073100 chr3D 85.222 203 29 1 240 442 45407917 45407716 1.230000e-49 207.0
12 TraesCS4D01G073100 chr3D 89.333 150 16 0 3119 3268 523398321 523398470 4.460000e-44 189.0
13 TraesCS4D01G073100 chr3D 79.039 229 37 8 247 470 348154467 348154689 2.720000e-31 147.0
14 TraesCS4D01G073100 chr5A 80.400 250 43 6 266 511 581131544 581131297 5.770000e-43 185.0
15 TraesCS4D01G073100 chr5A 79.283 251 42 8 264 508 673931095 673931341 2.090000e-37 167.0
16 TraesCS4D01G073100 chr1D 78.947 285 44 11 233 511 107546234 107545960 2.680000e-41 180.0
17 TraesCS4D01G073100 chr3A 89.683 126 11 1 2685 2808 501390200 501390075 3.500000e-35 159.0
18 TraesCS4D01G073100 chr3A 86.029 136 13 3 2685 2815 80679044 80678910 1.270000e-29 141.0
19 TraesCS4D01G073100 chr2D 78.279 244 47 5 245 487 387745134 387744896 5.850000e-33 152.0
20 TraesCS4D01G073100 chr7B 83.099 71 10 2 2745 2814 664080575 664080644 2.820000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G073100 chr4D 47745656 47749041 3385 True 6253.0 6253 100.000 1 3386 1 chr4D.!!$R1 3385
1 TraesCS4D01G073100 chr4B 70055321 70057951 2630 True 1877.0 3428 93.474 1 2619 2 chr4B.!!$R1 2618
2 TraesCS4D01G073100 chr4A 549921748 549924310 2562 False 1890.5 3136 91.826 1 2619 2 chr4A.!!$F1 2618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 197 0.175531 AGCGTATTTGGCATTTGGGC 59.824 50.0 0.0 0.0 43.73 5.36 F
463 479 0.180171 TGCGTTCATAGGGATGGGTG 59.820 55.0 0.0 0.0 33.49 4.61 F
675 692 0.181350 ATAGGGCGAGCAAAGAAGGG 59.819 55.0 0.0 0.0 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1474 1498 0.526096 GCGGCGTAAATGTACCTCGA 60.526 55.0 9.37 0.0 0.00 4.04 R
2019 2046 0.610687 CCACTCTCAGGACCTTCACC 59.389 60.0 0.00 0.0 0.00 4.02 R
2635 2718 0.107459 GACCAACAGCCAGAGGGATC 60.107 60.0 0.00 0.0 35.59 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 84 5.643777 TCTTTTATTTTGCGAGGGAGAAGAG 59.356 40.000 0.00 0.00 0.00 2.85
74 85 4.553330 TTATTTTGCGAGGGAGAAGAGT 57.447 40.909 0.00 0.00 0.00 3.24
129 140 5.475564 TGGACAATAGGTTTTTGGTTCTAGC 59.524 40.000 0.00 0.00 0.00 3.42
134 145 1.068541 GGTTTTTGGTTCTAGCTGGCG 60.069 52.381 0.00 0.00 0.00 5.69
177 188 7.531716 TGACCAACTAATTTTAGCGTATTTGG 58.468 34.615 11.94 11.94 37.65 3.28
186 197 0.175531 AGCGTATTTGGCATTTGGGC 59.824 50.000 0.00 0.00 43.73 5.36
204 215 1.679032 GGCTACCAACTTGGCCTACTG 60.679 57.143 7.81 0.00 42.67 2.74
236 247 1.069227 CCAACTTACTCGCAAAGTGGC 60.069 52.381 0.00 0.00 39.11 5.01
315 331 5.332743 TGGATTTATTTCAGCCTTTCCTGT 58.667 37.500 0.00 0.00 34.47 4.00
375 391 1.152963 AGGCGCTTGTGGTGACTTT 60.153 52.632 7.64 0.00 41.79 2.66
399 415 1.489481 ATCTCAAGAGGATGTGCCGA 58.511 50.000 0.00 0.00 43.43 5.54
402 418 0.976641 TCAAGAGGATGTGCCGACTT 59.023 50.000 0.00 0.00 43.43 3.01
424 440 2.501723 GGTCTCTTGGAGGTGCTCATAA 59.498 50.000 0.00 0.00 31.08 1.90
457 473 0.809636 CGTGCATGCGTTCATAGGGA 60.810 55.000 14.09 0.00 0.00 4.20
463 479 0.180171 TGCGTTCATAGGGATGGGTG 59.820 55.000 0.00 0.00 33.49 4.61
475 491 4.175172 AGGGATGGGTGTATGTGCATATA 58.825 43.478 0.00 0.00 0.00 0.86
528 545 5.784578 AAAAACTCCTCGCAAAAGGTTAT 57.215 34.783 0.00 0.00 37.69 1.89
534 551 7.462571 ACTCCTCGCAAAAGGTTATAAAATT 57.537 32.000 0.00 0.00 37.69 1.82
535 552 7.312899 ACTCCTCGCAAAAGGTTATAAAATTG 58.687 34.615 0.00 0.00 37.69 2.32
536 553 7.039993 ACTCCTCGCAAAAGGTTATAAAATTGT 60.040 33.333 0.00 0.00 37.69 2.71
647 664 5.632347 ACAAATACTACGAAGAACAAGGACG 59.368 40.000 0.00 0.00 0.00 4.79
675 692 0.181350 ATAGGGCGAGCAAAGAAGGG 59.819 55.000 0.00 0.00 0.00 3.95
769 786 3.710722 CGCCTCAACTGCCCCTCT 61.711 66.667 0.00 0.00 0.00 3.69
782 799 2.722201 CCCTCTCCGTCCCTTTCCG 61.722 68.421 0.00 0.00 0.00 4.30
814 831 0.850856 GTCTCGCGAGAAAACGTTGT 59.149 50.000 38.20 0.00 41.32 3.32
867 884 4.159693 CACTATATATAAGCTCGTGCCCCA 59.840 45.833 5.73 0.00 40.80 4.96
947 964 3.740044 GATCGGTCTCTCTCATCGATC 57.260 52.381 0.00 7.99 45.57 3.69
948 965 2.622064 TCGGTCTCTCTCATCGATCA 57.378 50.000 0.00 0.00 0.00 2.92
1695 1722 3.467226 TTCGACCCAGCGGATCCC 61.467 66.667 6.06 0.00 0.00 3.85
1740 1767 1.134788 GGATTCCTGTCCCTGTACACG 60.135 57.143 0.00 0.00 31.82 4.49
1815 1842 1.517257 CGAGGTGACACGGCTCATC 60.517 63.158 11.06 0.00 40.94 2.92
1825 1852 4.332543 TGACACGGCTCATCAAACAATATC 59.667 41.667 0.00 0.00 0.00 1.63
1837 1864 2.231215 ACAATATCAGCACGAGGAGC 57.769 50.000 0.00 0.00 0.00 4.70
2145 2172 0.392193 GGAGCTGTGCATGCTACACT 60.392 55.000 20.33 17.95 40.88 3.55
2217 2244 1.303561 TGTGCATGACTTGGAGGCC 60.304 57.895 0.00 0.00 0.00 5.19
2396 2427 8.657387 TCCTTAGGGATTTAGACTCATCATAG 57.343 38.462 0.00 0.00 36.57 2.23
2401 2483 8.415950 AGGGATTTAGACTCATCATAGTACAG 57.584 38.462 0.00 0.00 0.00 2.74
2452 2534 9.153479 TGATTTTTGAGGGAAAGGAAATTAAGA 57.847 29.630 0.00 0.00 0.00 2.10
2454 2536 9.948964 ATTTTTGAGGGAAAGGAAATTAAGATG 57.051 29.630 0.00 0.00 0.00 2.90
2455 2537 6.530019 TTGAGGGAAAGGAAATTAAGATGC 57.470 37.500 0.00 0.00 0.00 3.91
2516 2598 7.878477 AATAACACAATGAAGAGTGCAAATG 57.122 32.000 0.00 0.00 39.30 2.32
2596 2679 6.009589 TCTTGAGGAAGCCAACAATTGATAA 58.990 36.000 13.59 0.00 0.00 1.75
2634 2717 7.307493 TGTGATCACACTAATCAATAACTGC 57.693 36.000 24.56 0.00 46.07 4.40
2635 2718 6.035975 TGTGATCACACTAATCAATAACTGCG 59.964 38.462 24.56 0.00 46.07 5.18
2636 2719 6.255670 GTGATCACACTAATCAATAACTGCGA 59.744 38.462 21.07 0.00 42.99 5.10
2637 2720 6.986231 TGATCACACTAATCAATAACTGCGAT 59.014 34.615 0.00 0.00 30.37 4.58
2638 2721 6.828502 TCACACTAATCAATAACTGCGATC 57.171 37.500 0.00 0.00 0.00 3.69
2639 2722 5.753438 TCACACTAATCAATAACTGCGATCC 59.247 40.000 0.00 0.00 0.00 3.36
2640 2723 5.050091 CACACTAATCAATAACTGCGATCCC 60.050 44.000 0.00 0.00 0.00 3.85
2641 2724 5.163301 ACACTAATCAATAACTGCGATCCCT 60.163 40.000 0.00 0.00 0.00 4.20
2642 2725 5.406780 CACTAATCAATAACTGCGATCCCTC 59.593 44.000 0.00 0.00 0.00 4.30
2643 2726 4.696479 AATCAATAACTGCGATCCCTCT 57.304 40.909 0.00 0.00 0.00 3.69
2644 2727 3.459232 TCAATAACTGCGATCCCTCTG 57.541 47.619 0.00 0.00 0.00 3.35
2645 2728 2.103094 TCAATAACTGCGATCCCTCTGG 59.897 50.000 0.00 0.00 0.00 3.86
2646 2729 0.394565 ATAACTGCGATCCCTCTGGC 59.605 55.000 0.00 0.00 0.00 4.85
2647 2730 0.687757 TAACTGCGATCCCTCTGGCT 60.688 55.000 0.00 0.00 0.00 4.75
2648 2731 2.108566 CTGCGATCCCTCTGGCTG 59.891 66.667 0.00 0.00 0.00 4.85
2649 2732 2.685017 TGCGATCCCTCTGGCTGT 60.685 61.111 0.00 0.00 0.00 4.40
2650 2733 2.249413 CTGCGATCCCTCTGGCTGTT 62.249 60.000 0.00 0.00 0.00 3.16
2651 2734 1.817099 GCGATCCCTCTGGCTGTTG 60.817 63.158 0.00 0.00 0.00 3.33
2652 2735 1.153289 CGATCCCTCTGGCTGTTGG 60.153 63.158 0.00 0.00 0.00 3.77
2653 2736 1.903877 CGATCCCTCTGGCTGTTGGT 61.904 60.000 0.00 0.00 0.00 3.67
2654 2737 0.107459 GATCCCTCTGGCTGTTGGTC 60.107 60.000 0.00 0.00 0.00 4.02
2655 2738 1.903877 ATCCCTCTGGCTGTTGGTCG 61.904 60.000 0.00 0.00 0.00 4.79
2656 2739 2.743928 CCTCTGGCTGTTGGTCGC 60.744 66.667 0.00 0.00 0.00 5.19
2657 2740 3.114616 CTCTGGCTGTTGGTCGCG 61.115 66.667 0.00 0.00 0.00 5.87
2675 2758 3.549150 CGCGTGCTAGTGCTGCTC 61.549 66.667 0.00 0.00 40.48 4.26
2676 2759 2.433145 GCGTGCTAGTGCTGCTCA 60.433 61.111 0.00 0.00 40.48 4.26
2677 2760 2.734673 GCGTGCTAGTGCTGCTCAC 61.735 63.158 0.00 2.11 45.98 3.51
2684 2767 4.988065 GTGCTGCTCACGAAGGTA 57.012 55.556 0.00 0.00 35.76 3.08
2685 2768 2.743195 GTGCTGCTCACGAAGGTAG 58.257 57.895 0.00 0.00 35.76 3.18
2686 2769 0.243907 GTGCTGCTCACGAAGGTAGA 59.756 55.000 0.00 0.00 35.76 2.59
2687 2770 0.528017 TGCTGCTCACGAAGGTAGAG 59.472 55.000 0.00 0.00 0.00 2.43
2688 2771 0.811915 GCTGCTCACGAAGGTAGAGA 59.188 55.000 0.00 0.00 0.00 3.10
2689 2772 1.468395 GCTGCTCACGAAGGTAGAGAC 60.468 57.143 0.00 0.00 0.00 3.36
2690 2773 1.813178 CTGCTCACGAAGGTAGAGACA 59.187 52.381 0.00 0.00 0.00 3.41
2691 2774 1.813178 TGCTCACGAAGGTAGAGACAG 59.187 52.381 0.00 0.00 0.00 3.51
2692 2775 1.133407 GCTCACGAAGGTAGAGACAGG 59.867 57.143 0.00 0.00 0.00 4.00
2693 2776 2.712709 CTCACGAAGGTAGAGACAGGA 58.287 52.381 0.00 0.00 0.00 3.86
2694 2777 2.680841 CTCACGAAGGTAGAGACAGGAG 59.319 54.545 0.00 0.00 0.00 3.69
2695 2778 2.305052 TCACGAAGGTAGAGACAGGAGA 59.695 50.000 0.00 0.00 0.00 3.71
2696 2779 2.680841 CACGAAGGTAGAGACAGGAGAG 59.319 54.545 0.00 0.00 0.00 3.20
2697 2780 2.572556 ACGAAGGTAGAGACAGGAGAGA 59.427 50.000 0.00 0.00 0.00 3.10
2698 2781 3.202906 CGAAGGTAGAGACAGGAGAGAG 58.797 54.545 0.00 0.00 0.00 3.20
2699 2782 3.118555 CGAAGGTAGAGACAGGAGAGAGA 60.119 52.174 0.00 0.00 0.00 3.10
2700 2783 4.451900 GAAGGTAGAGACAGGAGAGAGAG 58.548 52.174 0.00 0.00 0.00 3.20
2701 2784 3.731431 AGGTAGAGACAGGAGAGAGAGA 58.269 50.000 0.00 0.00 0.00 3.10
2702 2785 4.307259 AGGTAGAGACAGGAGAGAGAGAT 58.693 47.826 0.00 0.00 0.00 2.75
2703 2786 4.348168 AGGTAGAGACAGGAGAGAGAGATC 59.652 50.000 0.00 0.00 0.00 2.75
2704 2787 3.475566 AGAGACAGGAGAGAGAGATCG 57.524 52.381 0.00 0.00 0.00 3.69
2705 2788 2.104792 AGAGACAGGAGAGAGAGATCGG 59.895 54.545 0.00 0.00 0.00 4.18
2706 2789 2.104111 GAGACAGGAGAGAGAGATCGGA 59.896 54.545 0.00 0.00 0.00 4.55
2707 2790 2.104792 AGACAGGAGAGAGAGATCGGAG 59.895 54.545 0.00 0.00 0.00 4.63
2708 2791 1.142870 ACAGGAGAGAGAGATCGGAGG 59.857 57.143 0.00 0.00 0.00 4.30
2709 2792 1.142870 CAGGAGAGAGAGATCGGAGGT 59.857 57.143 0.00 0.00 0.00 3.85
2710 2793 2.370519 CAGGAGAGAGAGATCGGAGGTA 59.629 54.545 0.00 0.00 0.00 3.08
2711 2794 2.637872 AGGAGAGAGAGATCGGAGGTAG 59.362 54.545 0.00 0.00 0.00 3.18
2712 2795 2.635915 GGAGAGAGAGATCGGAGGTAGA 59.364 54.545 0.00 0.00 0.00 2.59
2713 2796 3.071892 GGAGAGAGAGATCGGAGGTAGAA 59.928 52.174 0.00 0.00 0.00 2.10
2714 2797 4.315803 GAGAGAGAGATCGGAGGTAGAAG 58.684 52.174 0.00 0.00 0.00 2.85
2715 2798 3.971305 AGAGAGAGATCGGAGGTAGAAGA 59.029 47.826 0.00 0.00 0.00 2.87
2716 2799 4.410883 AGAGAGAGATCGGAGGTAGAAGAA 59.589 45.833 0.00 0.00 0.00 2.52
2717 2800 5.104277 AGAGAGAGATCGGAGGTAGAAGAAA 60.104 44.000 0.00 0.00 0.00 2.52
2718 2801 5.130350 AGAGAGATCGGAGGTAGAAGAAAG 58.870 45.833 0.00 0.00 0.00 2.62
2719 2802 5.104277 AGAGAGATCGGAGGTAGAAGAAAGA 60.104 44.000 0.00 0.00 0.00 2.52
2720 2803 5.511363 AGAGATCGGAGGTAGAAGAAAGAA 58.489 41.667 0.00 0.00 0.00 2.52
2721 2804 5.592688 AGAGATCGGAGGTAGAAGAAAGAAG 59.407 44.000 0.00 0.00 0.00 2.85
2722 2805 4.647399 AGATCGGAGGTAGAAGAAAGAAGG 59.353 45.833 0.00 0.00 0.00 3.46
2723 2806 3.775910 TCGGAGGTAGAAGAAAGAAGGT 58.224 45.455 0.00 0.00 0.00 3.50
2724 2807 3.510360 TCGGAGGTAGAAGAAAGAAGGTG 59.490 47.826 0.00 0.00 0.00 4.00
2725 2808 3.258622 CGGAGGTAGAAGAAAGAAGGTGT 59.741 47.826 0.00 0.00 0.00 4.16
2726 2809 4.570930 GGAGGTAGAAGAAAGAAGGTGTG 58.429 47.826 0.00 0.00 0.00 3.82
2727 2810 3.997681 GAGGTAGAAGAAAGAAGGTGTGC 59.002 47.826 0.00 0.00 0.00 4.57
2728 2811 2.737252 GGTAGAAGAAAGAAGGTGTGCG 59.263 50.000 0.00 0.00 0.00 5.34
2729 2812 2.622064 AGAAGAAAGAAGGTGTGCGT 57.378 45.000 0.00 0.00 0.00 5.24
2730 2813 2.919228 AGAAGAAAGAAGGTGTGCGTT 58.081 42.857 0.00 0.00 0.00 4.84
2731 2814 2.614057 AGAAGAAAGAAGGTGTGCGTTG 59.386 45.455 0.00 0.00 0.00 4.10
2732 2815 2.325583 AGAAAGAAGGTGTGCGTTGA 57.674 45.000 0.00 0.00 0.00 3.18
2733 2816 2.213499 AGAAAGAAGGTGTGCGTTGAG 58.787 47.619 0.00 0.00 0.00 3.02
2734 2817 2.158957 AGAAAGAAGGTGTGCGTTGAGA 60.159 45.455 0.00 0.00 0.00 3.27
2735 2818 2.550830 AAGAAGGTGTGCGTTGAGAT 57.449 45.000 0.00 0.00 0.00 2.75
2736 2819 2.550830 AGAAGGTGTGCGTTGAGATT 57.449 45.000 0.00 0.00 0.00 2.40
2737 2820 2.417719 AGAAGGTGTGCGTTGAGATTC 58.582 47.619 0.00 0.00 0.00 2.52
2738 2821 1.126846 GAAGGTGTGCGTTGAGATTCG 59.873 52.381 0.00 0.00 0.00 3.34
2739 2822 0.033504 AGGTGTGCGTTGAGATTCGT 59.966 50.000 0.00 0.00 0.00 3.85
2740 2823 0.865769 GGTGTGCGTTGAGATTCGTT 59.134 50.000 0.00 0.00 0.00 3.85
2741 2824 1.263217 GGTGTGCGTTGAGATTCGTTT 59.737 47.619 0.00 0.00 0.00 3.60
2742 2825 2.286772 GGTGTGCGTTGAGATTCGTTTT 60.287 45.455 0.00 0.00 0.00 2.43
2743 2826 2.713976 GTGTGCGTTGAGATTCGTTTTG 59.286 45.455 0.00 0.00 0.00 2.44
2744 2827 1.708680 GTGCGTTGAGATTCGTTTTGC 59.291 47.619 0.00 0.00 0.00 3.68
2745 2828 1.327507 GCGTTGAGATTCGTTTTGCC 58.672 50.000 0.00 0.00 0.00 4.52
2746 2829 1.334599 GCGTTGAGATTCGTTTTGCCA 60.335 47.619 0.00 0.00 0.00 4.92
2747 2830 2.574322 CGTTGAGATTCGTTTTGCCAG 58.426 47.619 0.00 0.00 0.00 4.85
2748 2831 2.665519 CGTTGAGATTCGTTTTGCCAGG 60.666 50.000 0.00 0.00 0.00 4.45
2749 2832 2.270352 TGAGATTCGTTTTGCCAGGT 57.730 45.000 0.00 0.00 0.00 4.00
2750 2833 1.879380 TGAGATTCGTTTTGCCAGGTG 59.121 47.619 0.00 0.00 0.00 4.00
2751 2834 1.880027 GAGATTCGTTTTGCCAGGTGT 59.120 47.619 0.00 0.00 0.00 4.16
2752 2835 1.880027 AGATTCGTTTTGCCAGGTGTC 59.120 47.619 0.00 0.00 0.00 3.67
2753 2836 1.606668 GATTCGTTTTGCCAGGTGTCA 59.393 47.619 0.00 0.00 0.00 3.58
2754 2837 1.686355 TTCGTTTTGCCAGGTGTCAT 58.314 45.000 0.00 0.00 0.00 3.06
2755 2838 1.234821 TCGTTTTGCCAGGTGTCATC 58.765 50.000 0.00 0.00 0.00 2.92
2756 2839 0.950836 CGTTTTGCCAGGTGTCATCA 59.049 50.000 0.00 0.00 0.00 3.07
2757 2840 1.541147 CGTTTTGCCAGGTGTCATCAT 59.459 47.619 0.00 0.00 0.00 2.45
2758 2841 2.669113 CGTTTTGCCAGGTGTCATCATG 60.669 50.000 0.00 0.00 0.00 3.07
2759 2842 2.557924 GTTTTGCCAGGTGTCATCATGA 59.442 45.455 0.00 0.00 0.00 3.07
2760 2843 2.118313 TTGCCAGGTGTCATCATGAG 57.882 50.000 0.09 0.00 0.00 2.90
2761 2844 0.253894 TGCCAGGTGTCATCATGAGG 59.746 55.000 0.00 0.00 0.00 3.86
2762 2845 0.543277 GCCAGGTGTCATCATGAGGA 59.457 55.000 5.84 5.84 0.00 3.71
2763 2846 1.474677 GCCAGGTGTCATCATGAGGAG 60.475 57.143 10.93 0.00 0.00 3.69
2764 2847 2.113807 CCAGGTGTCATCATGAGGAGA 58.886 52.381 10.93 6.73 0.00 3.71
2765 2848 2.102757 CCAGGTGTCATCATGAGGAGAG 59.897 54.545 10.93 0.00 0.00 3.20
2766 2849 2.102757 CAGGTGTCATCATGAGGAGAGG 59.897 54.545 10.93 0.00 0.00 3.69
2767 2850 1.415659 GGTGTCATCATGAGGAGAGGG 59.584 57.143 10.93 0.00 0.00 4.30
2768 2851 2.114616 GTGTCATCATGAGGAGAGGGT 58.885 52.381 10.93 0.00 0.00 4.34
2769 2852 2.102252 GTGTCATCATGAGGAGAGGGTC 59.898 54.545 10.93 0.00 0.00 4.46
2770 2853 1.339610 GTCATCATGAGGAGAGGGTCG 59.660 57.143 10.93 0.00 0.00 4.79
2771 2854 0.033228 CATCATGAGGAGAGGGTCGC 59.967 60.000 0.00 0.00 0.00 5.19
2772 2855 0.397675 ATCATGAGGAGAGGGTCGCA 60.398 55.000 0.09 0.00 0.00 5.10
2773 2856 1.142748 CATGAGGAGAGGGTCGCAC 59.857 63.158 0.00 0.00 0.00 5.34
2774 2857 2.418910 ATGAGGAGAGGGTCGCACG 61.419 63.158 0.00 0.00 0.00 5.34
2775 2858 3.827898 GAGGAGAGGGTCGCACGG 61.828 72.222 0.00 0.00 0.00 4.94
2796 2879 2.810403 GGGATGTACGACCCGGTC 59.190 66.667 7.59 7.59 36.56 4.79
2809 2892 4.581077 GACCCGGTCGTATAAGATTTCT 57.419 45.455 0.65 0.00 0.00 2.52
2810 2893 4.941657 GACCCGGTCGTATAAGATTTCTT 58.058 43.478 0.65 0.00 39.85 2.52
2811 2894 5.349061 ACCCGGTCGTATAAGATTTCTTT 57.651 39.130 0.00 0.00 37.40 2.52
2812 2895 5.354767 ACCCGGTCGTATAAGATTTCTTTC 58.645 41.667 0.00 0.00 37.40 2.62
2813 2896 4.748600 CCCGGTCGTATAAGATTTCTTTCC 59.251 45.833 0.00 0.00 37.40 3.13
2814 2897 5.353938 CCGGTCGTATAAGATTTCTTTCCA 58.646 41.667 0.00 0.00 37.40 3.53
2815 2898 5.989777 CCGGTCGTATAAGATTTCTTTCCAT 59.010 40.000 0.00 0.00 37.40 3.41
2816 2899 7.149973 CCGGTCGTATAAGATTTCTTTCCATA 58.850 38.462 0.00 0.00 37.40 2.74
2817 2900 7.328737 CCGGTCGTATAAGATTTCTTTCCATAG 59.671 40.741 0.00 0.00 37.40 2.23
2818 2901 7.866393 CGGTCGTATAAGATTTCTTTCCATAGT 59.134 37.037 0.00 0.00 37.40 2.12
2819 2902 8.979574 GGTCGTATAAGATTTCTTTCCATAGTG 58.020 37.037 0.00 0.00 37.40 2.74
2820 2903 8.979574 GTCGTATAAGATTTCTTTCCATAGTGG 58.020 37.037 0.00 0.00 36.79 4.00
2821 2904 8.701895 TCGTATAAGATTTCTTTCCATAGTGGT 58.298 33.333 0.00 0.00 36.80 4.16
2822 2905 9.976511 CGTATAAGATTTCTTTCCATAGTGGTA 57.023 33.333 0.00 0.00 36.80 3.25
2825 2908 6.002653 AGATTTCTTTCCATAGTGGTACCC 57.997 41.667 10.07 0.32 39.03 3.69
2826 2909 3.899052 TTCTTTCCATAGTGGTACCCG 57.101 47.619 10.07 0.00 39.03 5.28
2827 2910 2.823959 TCTTTCCATAGTGGTACCCGT 58.176 47.619 10.07 0.00 39.03 5.28
2828 2911 3.979911 TCTTTCCATAGTGGTACCCGTA 58.020 45.455 10.07 0.64 39.03 4.02
2829 2912 4.352009 TCTTTCCATAGTGGTACCCGTAA 58.648 43.478 10.07 0.00 39.03 3.18
2830 2913 4.403432 TCTTTCCATAGTGGTACCCGTAAG 59.597 45.833 10.07 0.00 39.03 2.34
2831 2914 3.668141 TCCATAGTGGTACCCGTAAGA 57.332 47.619 10.07 0.00 39.03 2.10
2832 2915 3.559069 TCCATAGTGGTACCCGTAAGAG 58.441 50.000 10.07 0.00 39.03 2.85
2833 2916 2.626743 CCATAGTGGTACCCGTAAGAGG 59.373 54.545 10.07 0.00 33.03 3.69
2834 2917 3.559069 CATAGTGGTACCCGTAAGAGGA 58.441 50.000 10.07 0.00 43.02 3.71
2835 2918 2.842645 AGTGGTACCCGTAAGAGGAT 57.157 50.000 10.07 0.00 43.02 3.24
2836 2919 2.385803 AGTGGTACCCGTAAGAGGATG 58.614 52.381 10.07 0.00 43.02 3.51
2837 2920 1.411612 GTGGTACCCGTAAGAGGATGG 59.588 57.143 10.07 0.00 43.02 3.51
2838 2921 0.391966 GGTACCCGTAAGAGGATGGC 59.608 60.000 0.00 0.00 43.02 4.40
2839 2922 1.411041 GTACCCGTAAGAGGATGGCT 58.589 55.000 0.00 0.00 43.02 4.75
2840 2923 1.340568 GTACCCGTAAGAGGATGGCTC 59.659 57.143 0.00 0.00 43.02 4.70
2841 2924 0.325296 ACCCGTAAGAGGATGGCTCA 60.325 55.000 0.00 0.00 43.02 4.26
2842 2925 1.051812 CCCGTAAGAGGATGGCTCAT 58.948 55.000 0.00 0.00 43.02 2.90
2843 2926 2.248248 CCCGTAAGAGGATGGCTCATA 58.752 52.381 0.00 0.00 43.02 2.15
2844 2927 2.232452 CCCGTAAGAGGATGGCTCATAG 59.768 54.545 0.00 0.00 43.02 2.23
2845 2928 2.894126 CCGTAAGAGGATGGCTCATAGT 59.106 50.000 0.00 0.00 43.02 2.12
2846 2929 3.305676 CCGTAAGAGGATGGCTCATAGTG 60.306 52.174 0.00 0.00 43.02 2.74
2847 2930 2.926778 AAGAGGATGGCTCATAGTGC 57.073 50.000 0.00 0.00 0.00 4.40
2848 2931 1.798626 AGAGGATGGCTCATAGTGCA 58.201 50.000 0.00 0.00 0.00 4.57
2849 2932 2.121948 AGAGGATGGCTCATAGTGCAA 58.878 47.619 0.00 0.00 0.00 4.08
2850 2933 2.158842 AGAGGATGGCTCATAGTGCAAC 60.159 50.000 0.00 0.00 0.00 4.17
2869 2952 7.189512 GTGCAACTTATTGATTAGTGATCACC 58.810 38.462 22.21 7.53 44.28 4.02
2870 2953 6.883756 TGCAACTTATTGATTAGTGATCACCA 59.116 34.615 22.21 5.97 44.28 4.17
2871 2954 7.557358 TGCAACTTATTGATTAGTGATCACCAT 59.443 33.333 22.21 14.44 44.28 3.55
2872 2955 9.056005 GCAACTTATTGATTAGTGATCACCATA 57.944 33.333 22.21 6.48 44.28 2.74
2875 2958 9.770097 ACTTATTGATTAGTGATCACCATAGTG 57.230 33.333 22.21 6.06 44.28 2.74
2876 2959 9.770097 CTTATTGATTAGTGATCACCATAGTGT 57.230 33.333 22.21 4.50 44.28 3.55
2877 2960 9.546428 TTATTGATTAGTGATCACCATAGTGTG 57.454 33.333 22.21 0.00 44.28 3.82
2883 2966 2.691663 TCACCATAGTGTGACCCCC 58.308 57.895 0.00 0.00 44.83 5.40
2884 2967 0.118346 TCACCATAGTGTGACCCCCT 59.882 55.000 0.00 0.00 44.83 4.79
2885 2968 0.541863 CACCATAGTGTGACCCCCTC 59.458 60.000 0.00 0.00 39.30 4.30
2886 2969 0.620700 ACCATAGTGTGACCCCCTCC 60.621 60.000 0.00 0.00 0.00 4.30
2887 2970 1.345715 CCATAGTGTGACCCCCTCCC 61.346 65.000 0.00 0.00 0.00 4.30
2888 2971 1.004361 ATAGTGTGACCCCCTCCCC 59.996 63.158 0.00 0.00 0.00 4.81
2889 2972 1.537478 ATAGTGTGACCCCCTCCCCT 61.537 60.000 0.00 0.00 0.00 4.79
2890 2973 2.177529 TAGTGTGACCCCCTCCCCTC 62.178 65.000 0.00 0.00 0.00 4.30
2891 2974 3.208592 TGTGACCCCCTCCCCTCT 61.209 66.667 0.00 0.00 0.00 3.69
2892 2975 2.365768 GTGACCCCCTCCCCTCTC 60.366 72.222 0.00 0.00 0.00 3.20
2893 2976 2.874245 TGACCCCCTCCCCTCTCA 60.874 66.667 0.00 0.00 0.00 3.27
2894 2977 2.365768 GACCCCCTCCCCTCTCAC 60.366 72.222 0.00 0.00 0.00 3.51
2895 2978 4.400251 ACCCCCTCCCCTCTCACG 62.400 72.222 0.00 0.00 0.00 4.35
2896 2979 4.075793 CCCCCTCCCCTCTCACGA 62.076 72.222 0.00 0.00 0.00 4.35
2897 2980 2.443016 CCCCTCCCCTCTCACGAG 60.443 72.222 0.00 0.00 37.01 4.18
2898 2981 3.151022 CCCTCCCCTCTCACGAGC 61.151 72.222 0.00 0.00 35.90 5.03
2899 2982 3.151022 CCTCCCCTCTCACGAGCC 61.151 72.222 0.00 0.00 35.90 4.70
2900 2983 2.043450 CTCCCCTCTCACGAGCCT 60.043 66.667 0.00 0.00 35.90 4.58
2901 2984 2.043852 TCCCCTCTCACGAGCCTC 60.044 66.667 0.00 0.00 35.90 4.70
2902 2985 2.043450 CCCCTCTCACGAGCCTCT 60.043 66.667 0.00 0.00 35.90 3.69
2903 2986 2.124693 CCCCTCTCACGAGCCTCTC 61.125 68.421 0.00 0.00 35.90 3.20
2904 2987 1.077068 CCCTCTCACGAGCCTCTCT 60.077 63.158 0.00 0.00 35.90 3.10
2905 2988 1.101049 CCCTCTCACGAGCCTCTCTC 61.101 65.000 0.00 0.00 35.90 3.20
2912 2995 4.863925 GAGCCTCTCTCGTGCCGC 62.864 72.222 0.00 0.00 31.20 6.53
2915 2998 4.803426 CCTCTCTCGTGCCGCCAC 62.803 72.222 0.00 0.00 38.62 5.01
2916 2999 4.803426 CTCTCTCGTGCCGCCACC 62.803 72.222 0.00 0.00 38.79 4.61
2928 3011 4.554036 GCCACCCTCCTGCCGATC 62.554 72.222 0.00 0.00 0.00 3.69
2929 3012 2.765807 CCACCCTCCTGCCGATCT 60.766 66.667 0.00 0.00 0.00 2.75
2930 3013 1.457643 CCACCCTCCTGCCGATCTA 60.458 63.158 0.00 0.00 0.00 1.98
2931 3014 0.833834 CCACCCTCCTGCCGATCTAT 60.834 60.000 0.00 0.00 0.00 1.98
2932 3015 0.319728 CACCCTCCTGCCGATCTATG 59.680 60.000 0.00 0.00 0.00 2.23
2933 3016 1.294780 CCCTCCTGCCGATCTATGC 59.705 63.158 0.00 0.00 0.00 3.14
2934 3017 1.294780 CCTCCTGCCGATCTATGCC 59.705 63.158 0.00 0.00 0.00 4.40
2935 3018 1.080230 CTCCTGCCGATCTATGCCG 60.080 63.158 0.00 0.00 0.00 5.69
2936 3019 2.740055 CCTGCCGATCTATGCCGC 60.740 66.667 0.00 0.00 0.00 6.53
2937 3020 2.740055 CTGCCGATCTATGCCGCC 60.740 66.667 0.00 0.00 0.00 6.13
2938 3021 3.519973 CTGCCGATCTATGCCGCCA 62.520 63.158 0.00 0.00 0.00 5.69
2939 3022 3.044305 GCCGATCTATGCCGCCAC 61.044 66.667 0.00 0.00 0.00 5.01
2940 3023 2.357517 CCGATCTATGCCGCCACC 60.358 66.667 0.00 0.00 0.00 4.61
2941 3024 2.357517 CGATCTATGCCGCCACCC 60.358 66.667 0.00 0.00 0.00 4.61
2942 3025 2.872388 CGATCTATGCCGCCACCCT 61.872 63.158 0.00 0.00 0.00 4.34
2943 3026 1.004440 GATCTATGCCGCCACCCTC 60.004 63.158 0.00 0.00 0.00 4.30
2944 3027 2.456287 GATCTATGCCGCCACCCTCC 62.456 65.000 0.00 0.00 0.00 4.30
2945 3028 4.256180 CTATGCCGCCACCCTCCC 62.256 72.222 0.00 0.00 0.00 4.30
2946 3029 4.815973 TATGCCGCCACCCTCCCT 62.816 66.667 0.00 0.00 0.00 4.20
2953 3036 4.825679 CCACCCTCCCTCCTCCCC 62.826 77.778 0.00 0.00 0.00 4.81
2954 3037 4.825679 CACCCTCCCTCCTCCCCC 62.826 77.778 0.00 0.00 0.00 5.40
2972 3055 4.834453 CTCCCTCGCTGCTGCCAG 62.834 72.222 10.24 6.61 42.13 4.85
2974 3057 4.834453 CCCTCGCTGCTGCCAGAG 62.834 72.222 11.67 11.72 41.77 3.35
2975 3058 4.834453 CCTCGCTGCTGCCAGAGG 62.834 72.222 19.78 19.78 41.77 3.69
2976 3059 4.834453 CTCGCTGCTGCCAGAGGG 62.834 72.222 10.24 0.00 41.77 4.30
3002 3085 3.989787 GGCAAAGCCCAACCGGTG 61.990 66.667 8.52 1.82 44.06 4.94
3003 3086 3.223589 GCAAAGCCCAACCGGTGT 61.224 61.111 8.52 0.00 0.00 4.16
3004 3087 3.039134 CAAAGCCCAACCGGTGTC 58.961 61.111 8.52 0.00 0.00 3.67
3005 3088 2.593436 AAAGCCCAACCGGTGTCG 60.593 61.111 8.52 0.00 0.00 4.35
3015 3098 4.980805 CGGTGTCGGTGGTGGGTG 62.981 72.222 0.00 0.00 0.00 4.61
3016 3099 4.636435 GGTGTCGGTGGTGGGTGG 62.636 72.222 0.00 0.00 0.00 4.61
3017 3100 4.636435 GTGTCGGTGGTGGGTGGG 62.636 72.222 0.00 0.00 0.00 4.61
3024 3107 4.601297 TGGTGGGTGGGGGTGCTA 62.601 66.667 0.00 0.00 0.00 3.49
3025 3108 3.728373 GGTGGGTGGGGGTGCTAG 61.728 72.222 0.00 0.00 0.00 3.42
3026 3109 3.728373 GTGGGTGGGGGTGCTAGG 61.728 72.222 0.00 0.00 0.00 3.02
3027 3110 4.279507 TGGGTGGGGGTGCTAGGT 62.280 66.667 0.00 0.00 0.00 3.08
3028 3111 2.041596 GGGTGGGGGTGCTAGGTA 59.958 66.667 0.00 0.00 0.00 3.08
3029 3112 1.385489 GGGTGGGGGTGCTAGGTAT 60.385 63.158 0.00 0.00 0.00 2.73
3030 3113 0.991893 GGGTGGGGGTGCTAGGTATT 60.992 60.000 0.00 0.00 0.00 1.89
3031 3114 0.472898 GGTGGGGGTGCTAGGTATTC 59.527 60.000 0.00 0.00 0.00 1.75
3032 3115 0.472898 GTGGGGGTGCTAGGTATTCC 59.527 60.000 0.00 0.00 0.00 3.01
3033 3116 0.696485 TGGGGGTGCTAGGTATTCCC 60.696 60.000 0.00 0.00 37.59 3.97
3035 3118 3.259336 GGGTGCTAGGTATTCCCCT 57.741 57.895 0.00 0.00 38.70 4.79
3036 3119 1.519498 GGGTGCTAGGTATTCCCCTT 58.481 55.000 0.00 0.00 35.97 3.95
3037 3120 1.420514 GGGTGCTAGGTATTCCCCTTC 59.579 57.143 0.00 0.00 35.97 3.46
3038 3121 1.420514 GGTGCTAGGTATTCCCCTTCC 59.579 57.143 0.00 0.00 35.97 3.46
3039 3122 1.070289 GTGCTAGGTATTCCCCTTCCG 59.930 57.143 0.00 0.00 35.97 4.30
3040 3123 0.035036 GCTAGGTATTCCCCTTCCGC 59.965 60.000 0.00 0.00 35.97 5.54
3041 3124 0.317479 CTAGGTATTCCCCTTCCGCG 59.683 60.000 0.00 0.00 35.97 6.46
3042 3125 0.106066 TAGGTATTCCCCTTCCGCGA 60.106 55.000 8.23 0.00 35.97 5.87
3043 3126 0.979187 AGGTATTCCCCTTCCGCGAA 60.979 55.000 8.23 0.00 0.00 4.70
3044 3127 0.812811 GGTATTCCCCTTCCGCGAAC 60.813 60.000 8.23 0.00 0.00 3.95
3045 3128 1.142314 TATTCCCCTTCCGCGAACG 59.858 57.895 8.23 0.00 39.67 3.95
3077 3160 2.572284 GTTCTCGACGGGTCAGGG 59.428 66.667 0.00 0.00 0.00 4.45
3078 3161 3.379445 TTCTCGACGGGTCAGGGC 61.379 66.667 0.00 0.00 0.00 5.19
3144 3227 2.434884 CGTGAAGGGCTGCGTGAT 60.435 61.111 0.00 0.00 0.00 3.06
3145 3228 2.743752 CGTGAAGGGCTGCGTGATG 61.744 63.158 0.00 0.00 0.00 3.07
3146 3229 2.046023 TGAAGGGCTGCGTGATGG 60.046 61.111 0.00 0.00 0.00 3.51
3147 3230 2.825836 GAAGGGCTGCGTGATGGG 60.826 66.667 0.00 0.00 0.00 4.00
3148 3231 3.329542 GAAGGGCTGCGTGATGGGA 62.330 63.158 0.00 0.00 0.00 4.37
3149 3232 3.335356 AAGGGCTGCGTGATGGGAG 62.335 63.158 0.00 0.00 0.00 4.30
3150 3233 4.864334 GGGCTGCGTGATGGGAGG 62.864 72.222 0.00 0.00 0.00 4.30
3151 3234 4.864334 GGCTGCGTGATGGGAGGG 62.864 72.222 0.00 0.00 0.00 4.30
3152 3235 4.864334 GCTGCGTGATGGGAGGGG 62.864 72.222 0.00 0.00 0.00 4.79
3153 3236 4.864334 CTGCGTGATGGGAGGGGC 62.864 72.222 0.00 0.00 0.00 5.80
3156 3239 4.838152 CGTGATGGGAGGGGCGTG 62.838 72.222 0.00 0.00 0.00 5.34
3178 3261 4.162690 GAGTTGGCGGCCGGATCT 62.163 66.667 29.38 9.46 0.00 2.75
3179 3262 4.473520 AGTTGGCGGCCGGATCTG 62.474 66.667 29.38 0.00 0.00 2.90
3188 3271 4.227134 CCGGATCTGGTCGGCAGG 62.227 72.222 12.93 0.00 39.78 4.85
3189 3272 4.899239 CGGATCTGGTCGGCAGGC 62.899 72.222 0.00 0.00 0.00 4.85
3190 3273 4.899239 GGATCTGGTCGGCAGGCG 62.899 72.222 10.80 10.80 0.00 5.52
3191 3274 4.899239 GATCTGGTCGGCAGGCGG 62.899 72.222 17.49 4.62 0.00 6.13
3207 3290 3.384532 GGCACGGGTCGGAGGTTA 61.385 66.667 0.00 0.00 0.00 2.85
3208 3291 2.125793 GCACGGGTCGGAGGTTAC 60.126 66.667 0.00 0.00 0.00 2.50
3209 3292 2.643232 GCACGGGTCGGAGGTTACT 61.643 63.158 0.00 0.00 0.00 2.24
3210 3293 1.214589 CACGGGTCGGAGGTTACTG 59.785 63.158 0.00 0.00 0.00 2.74
3211 3294 2.183555 CGGGTCGGAGGTTACTGC 59.816 66.667 0.00 0.00 0.00 4.40
3212 3295 2.348888 CGGGTCGGAGGTTACTGCT 61.349 63.158 0.00 0.00 32.11 4.24
3213 3296 1.516423 GGGTCGGAGGTTACTGCTC 59.484 63.158 0.00 0.00 32.11 4.26
3214 3297 1.516423 GGTCGGAGGTTACTGCTCC 59.484 63.158 0.00 0.00 32.11 4.70
3215 3298 1.516423 GTCGGAGGTTACTGCTCCC 59.484 63.158 0.00 0.00 33.93 4.30
3216 3299 1.684734 TCGGAGGTTACTGCTCCCC 60.685 63.158 0.00 0.00 33.93 4.81
3217 3300 1.686110 CGGAGGTTACTGCTCCCCT 60.686 63.158 0.00 0.00 33.93 4.79
3218 3301 1.265454 CGGAGGTTACTGCTCCCCTT 61.265 60.000 0.00 0.00 33.93 3.95
3219 3302 0.542333 GGAGGTTACTGCTCCCCTTC 59.458 60.000 0.00 0.00 31.51 3.46
3220 3303 0.542333 GAGGTTACTGCTCCCCTTCC 59.458 60.000 0.00 0.00 0.00 3.46
3221 3304 1.221021 GGTTACTGCTCCCCTTCCG 59.779 63.158 0.00 0.00 0.00 4.30
3222 3305 1.221021 GTTACTGCTCCCCTTCCGG 59.779 63.158 0.00 0.00 0.00 5.14
3223 3306 1.229400 TTACTGCTCCCCTTCCGGT 60.229 57.895 0.00 0.00 0.00 5.28
3224 3307 1.550130 TTACTGCTCCCCTTCCGGTG 61.550 60.000 0.00 0.00 0.00 4.94
3225 3308 4.101448 CTGCTCCCCTTCCGGTGG 62.101 72.222 0.00 5.20 0.00 4.61
3228 3311 4.101448 CTCCCCTTCCGGTGGCAG 62.101 72.222 0.00 0.58 0.00 4.85
3229 3312 4.974438 TCCCCTTCCGGTGGCAGT 62.974 66.667 0.00 0.00 0.00 4.40
3230 3313 4.722700 CCCCTTCCGGTGGCAGTG 62.723 72.222 0.00 0.00 0.00 3.66
3231 3314 4.722700 CCCTTCCGGTGGCAGTGG 62.723 72.222 0.00 0.00 0.00 4.00
3233 3316 4.335647 CTTCCGGTGGCAGTGGCT 62.336 66.667 18.53 0.00 40.87 4.75
3234 3317 2.925706 TTCCGGTGGCAGTGGCTA 60.926 61.111 18.53 1.37 40.87 3.93
3235 3318 2.463589 CTTCCGGTGGCAGTGGCTAA 62.464 60.000 18.53 0.00 40.87 3.09
3236 3319 2.436646 CCGGTGGCAGTGGCTAAG 60.437 66.667 18.53 8.37 40.87 2.18
3237 3320 2.436646 CGGTGGCAGTGGCTAAGG 60.437 66.667 18.53 0.93 40.87 2.69
3238 3321 2.044946 GGTGGCAGTGGCTAAGGG 60.045 66.667 18.53 0.00 40.87 3.95
3239 3322 2.751837 GTGGCAGTGGCTAAGGGC 60.752 66.667 18.53 0.00 40.87 5.19
3240 3323 4.408821 TGGCAGTGGCTAAGGGCG 62.409 66.667 18.53 0.00 42.94 6.13
3242 3325 4.410400 GCAGTGGCTAAGGGCGGT 62.410 66.667 0.00 0.00 42.94 5.68
3243 3326 2.436646 CAGTGGCTAAGGGCGGTG 60.437 66.667 0.00 0.00 42.94 4.94
3244 3327 3.717294 AGTGGCTAAGGGCGGTGG 61.717 66.667 0.00 0.00 42.94 4.61
3245 3328 4.029809 GTGGCTAAGGGCGGTGGT 62.030 66.667 0.00 0.00 42.94 4.16
3246 3329 4.028490 TGGCTAAGGGCGGTGGTG 62.028 66.667 0.00 0.00 42.94 4.17
3247 3330 4.796495 GGCTAAGGGCGGTGGTGG 62.796 72.222 0.00 0.00 42.94 4.61
3248 3331 3.712907 GCTAAGGGCGGTGGTGGA 61.713 66.667 0.00 0.00 0.00 4.02
3249 3332 2.584608 CTAAGGGCGGTGGTGGAG 59.415 66.667 0.00 0.00 0.00 3.86
3250 3333 3.682292 CTAAGGGCGGTGGTGGAGC 62.682 68.421 0.00 0.00 0.00 4.70
3254 3337 4.767255 GGCGGTGGTGGAGCTCTG 62.767 72.222 14.64 0.00 0.00 3.35
3256 3339 4.767255 CGGTGGTGGAGCTCTGCC 62.767 72.222 14.64 15.85 0.00 4.85
3257 3340 3.325753 GGTGGTGGAGCTCTGCCT 61.326 66.667 21.53 0.00 0.00 4.75
3258 3341 2.267324 GTGGTGGAGCTCTGCCTC 59.733 66.667 21.53 16.48 0.00 4.70
3259 3342 3.385384 TGGTGGAGCTCTGCCTCG 61.385 66.667 21.53 0.00 32.57 4.63
3260 3343 3.386237 GGTGGAGCTCTGCCTCGT 61.386 66.667 14.64 0.00 32.57 4.18
3261 3344 2.659610 GTGGAGCTCTGCCTCGTT 59.340 61.111 14.64 0.00 32.57 3.85
3262 3345 1.446966 GTGGAGCTCTGCCTCGTTC 60.447 63.158 14.64 0.00 32.57 3.95
3263 3346 2.202676 GGAGCTCTGCCTCGTTCG 60.203 66.667 14.64 0.00 32.57 3.95
3264 3347 2.883253 GAGCTCTGCCTCGTTCGC 60.883 66.667 6.43 0.00 0.00 4.70
3265 3348 4.785512 AGCTCTGCCTCGTTCGCG 62.786 66.667 0.00 0.00 42.98 5.87
3267 3350 3.175240 CTCTGCCTCGTTCGCGTG 61.175 66.667 5.77 0.00 42.11 5.34
3268 3351 3.898627 CTCTGCCTCGTTCGCGTGT 62.899 63.158 5.77 0.00 42.11 4.49
3269 3352 3.470567 CTGCCTCGTTCGCGTGTC 61.471 66.667 5.77 0.00 42.11 3.67
3270 3353 3.898627 CTGCCTCGTTCGCGTGTCT 62.899 63.158 5.77 0.00 42.11 3.41
3271 3354 3.173240 GCCTCGTTCGCGTGTCTC 61.173 66.667 5.77 0.00 42.11 3.36
3272 3355 2.254350 CCTCGTTCGCGTGTCTCA 59.746 61.111 5.77 0.00 42.11 3.27
3273 3356 1.154016 CCTCGTTCGCGTGTCTCAT 60.154 57.895 5.77 0.00 42.11 2.90
3274 3357 1.406219 CCTCGTTCGCGTGTCTCATG 61.406 60.000 5.77 0.00 42.11 3.07
3275 3358 0.729478 CTCGTTCGCGTGTCTCATGT 60.729 55.000 5.77 0.00 42.11 3.21
3276 3359 1.001745 TCGTTCGCGTGTCTCATGTG 61.002 55.000 5.77 0.00 42.11 3.21
3277 3360 1.781555 GTTCGCGTGTCTCATGTGG 59.218 57.895 5.77 0.00 32.45 4.17
3278 3361 2.027073 TTCGCGTGTCTCATGTGGC 61.027 57.895 5.77 0.00 32.45 5.01
3279 3362 2.707529 TTCGCGTGTCTCATGTGGCA 62.708 55.000 5.77 0.00 32.45 4.92
3280 3363 2.102438 CGCGTGTCTCATGTGGCAT 61.102 57.895 5.23 0.00 0.00 4.40
3281 3364 1.426621 GCGTGTCTCATGTGGCATG 59.573 57.895 15.53 15.53 0.00 4.06
3282 3365 1.985447 GCGTGTCTCATGTGGCATGG 61.985 60.000 19.93 10.33 0.00 3.66
3283 3366 0.674581 CGTGTCTCATGTGGCATGGT 60.675 55.000 12.68 0.00 0.00 3.55
3284 3367 1.405391 CGTGTCTCATGTGGCATGGTA 60.405 52.381 12.68 0.00 0.00 3.25
3285 3368 2.283298 GTGTCTCATGTGGCATGGTAG 58.717 52.381 5.23 1.40 0.00 3.18
3286 3369 1.303309 GTCTCATGTGGCATGGTAGC 58.697 55.000 8.95 0.00 0.00 3.58
3287 3370 0.179076 TCTCATGTGGCATGGTAGCG 60.179 55.000 8.95 0.00 34.64 4.26
3288 3371 1.153188 TCATGTGGCATGGTAGCGG 60.153 57.895 8.95 0.00 34.64 5.52
3289 3372 2.188829 CATGTGGCATGGTAGCGGG 61.189 63.158 0.00 0.00 34.64 6.13
3290 3373 4.794648 TGTGGCATGGTAGCGGGC 62.795 66.667 0.00 3.45 34.64 6.13
3304 3387 3.620785 GGGCGGCAGATCGGATCT 61.621 66.667 14.68 14.68 41.15 2.75
3305 3388 2.048690 GGCGGCAGATCGGATCTC 60.049 66.667 17.41 11.97 37.58 2.75
3306 3389 2.048690 GCGGCAGATCGGATCTCC 60.049 66.667 17.41 18.21 37.58 3.71
3316 3399 4.918201 GGATCTCCGGGCGGCAAG 62.918 72.222 12.47 5.04 34.68 4.01
3317 3400 4.162690 GATCTCCGGGCGGCAAGT 62.163 66.667 12.47 0.00 34.68 3.16
3318 3401 4.473520 ATCTCCGGGCGGCAAGTG 62.474 66.667 12.47 2.05 34.68 3.16
3330 3413 3.414700 CAAGTGGCGGCAGTCGTC 61.415 66.667 20.70 3.85 44.94 4.20
3340 3423 2.783275 CAGTCGTCATGCTGCAGC 59.217 61.111 31.89 31.89 42.50 5.25
3341 3424 2.435586 AGTCGTCATGCTGCAGCC 60.436 61.111 34.64 18.65 41.18 4.85
3342 3425 3.857854 GTCGTCATGCTGCAGCCG 61.858 66.667 34.64 28.58 41.18 5.52
3345 3428 3.873883 GTCATGCTGCAGCCGCTC 61.874 66.667 34.64 18.82 41.18 5.03
3346 3429 4.397832 TCATGCTGCAGCCGCTCA 62.398 61.111 34.64 17.30 41.18 4.26
3347 3430 3.436924 CATGCTGCAGCCGCTCAA 61.437 61.111 34.64 16.51 41.18 3.02
3348 3431 3.437795 ATGCTGCAGCCGCTCAAC 61.438 61.111 34.64 6.50 41.18 3.18
3351 3434 3.123620 CTGCAGCCGCTCAACCTC 61.124 66.667 0.00 0.00 39.64 3.85
3352 3435 3.889134 CTGCAGCCGCTCAACCTCA 62.889 63.158 0.00 0.00 39.64 3.86
3353 3436 2.437359 GCAGCCGCTCAACCTCAT 60.437 61.111 0.00 0.00 34.30 2.90
3354 3437 2.758089 GCAGCCGCTCAACCTCATG 61.758 63.158 0.00 0.00 34.30 3.07
3355 3438 1.376424 CAGCCGCTCAACCTCATGT 60.376 57.895 0.00 0.00 0.00 3.21
3356 3439 0.957395 CAGCCGCTCAACCTCATGTT 60.957 55.000 0.00 0.00 37.80 2.71
3357 3440 0.674895 AGCCGCTCAACCTCATGTTC 60.675 55.000 0.00 0.00 34.00 3.18
3358 3441 1.970917 GCCGCTCAACCTCATGTTCG 61.971 60.000 0.00 0.00 34.00 3.95
3359 3442 1.361668 CCGCTCAACCTCATGTTCGG 61.362 60.000 0.00 0.00 34.00 4.30
3360 3443 1.796796 GCTCAACCTCATGTTCGGC 59.203 57.895 0.00 0.00 34.00 5.54
3361 3444 0.674895 GCTCAACCTCATGTTCGGCT 60.675 55.000 0.00 0.00 34.00 5.52
3362 3445 1.813513 CTCAACCTCATGTTCGGCTT 58.186 50.000 0.00 0.00 34.00 4.35
3363 3446 1.734465 CTCAACCTCATGTTCGGCTTC 59.266 52.381 0.00 0.00 34.00 3.86
3364 3447 0.443869 CAACCTCATGTTCGGCTTCG 59.556 55.000 0.00 0.00 34.00 3.79
3365 3448 0.673644 AACCTCATGTTCGGCTTCGG 60.674 55.000 0.00 0.00 28.45 4.30
3366 3449 1.218047 CCTCATGTTCGGCTTCGGA 59.782 57.895 0.00 0.00 34.13 4.55
3367 3450 0.391130 CCTCATGTTCGGCTTCGGAA 60.391 55.000 0.00 0.00 34.13 4.30
3368 3451 0.721718 CTCATGTTCGGCTTCGGAAC 59.278 55.000 9.41 9.41 34.13 3.62
3369 3452 0.034198 TCATGTTCGGCTTCGGAACA 59.966 50.000 17.85 17.85 37.84 3.18
3370 3453 0.165944 CATGTTCGGCTTCGGAACAC 59.834 55.000 17.88 0.00 37.04 3.32
3371 3454 0.250124 ATGTTCGGCTTCGGAACACA 60.250 50.000 17.88 2.79 37.04 3.72
3372 3455 0.878523 TGTTCGGCTTCGGAACACAG 60.879 55.000 13.50 0.00 32.99 3.66
3373 3456 0.878961 GTTCGGCTTCGGAACACAGT 60.879 55.000 10.91 0.00 34.13 3.55
3374 3457 0.878523 TTCGGCTTCGGAACACAGTG 60.879 55.000 0.00 0.00 34.13 3.66
3375 3458 1.300620 CGGCTTCGGAACACAGTGA 60.301 57.895 7.81 0.00 0.00 3.41
3376 3459 0.670546 CGGCTTCGGAACACAGTGAT 60.671 55.000 7.81 0.00 0.00 3.06
3377 3460 0.798776 GGCTTCGGAACACAGTGATG 59.201 55.000 7.81 0.00 0.00 3.07
3378 3461 0.798776 GCTTCGGAACACAGTGATGG 59.201 55.000 7.81 0.00 0.00 3.51
3379 3462 1.878102 GCTTCGGAACACAGTGATGGT 60.878 52.381 7.81 0.00 0.00 3.55
3380 3463 1.800586 CTTCGGAACACAGTGATGGTG 59.199 52.381 7.81 0.00 41.95 4.17
3381 3464 0.034756 TCGGAACACAGTGATGGTGG 59.965 55.000 7.81 0.00 40.54 4.61
3382 3465 0.250295 CGGAACACAGTGATGGTGGT 60.250 55.000 7.81 0.00 39.29 4.16
3385 3468 2.957402 AACACAGTGATGGTGGTCAT 57.043 45.000 7.81 0.00 40.54 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.621055 CTCTGCTCCGCTATACAAGACT 59.379 50.000 0.00 0.00 0.00 3.24
129 140 1.864711 CGGGATTACATGTAACGCCAG 59.135 52.381 27.56 23.07 0.00 4.85
134 145 4.696402 TGGTCAAACGGGATTACATGTAAC 59.304 41.667 20.26 13.49 0.00 2.50
186 197 3.914426 ATCAGTAGGCCAAGTTGGTAG 57.086 47.619 22.85 7.28 40.46 3.18
204 215 5.005490 GCGAGTAAGTTGGTACTAGCAAATC 59.995 44.000 11.15 0.00 46.20 2.17
236 247 4.722700 CCTGGTGGGCTGGTTCCG 62.723 72.222 0.00 0.00 0.00 4.30
303 319 1.466167 CGAACATCACAGGAAAGGCTG 59.534 52.381 0.00 0.00 0.00 4.85
315 331 1.001974 CCTCCCACTGAACGAACATCA 59.998 52.381 0.00 0.00 0.00 3.07
360 376 1.013596 TGACAAAGTCACCACAAGCG 58.986 50.000 0.00 0.00 37.67 4.68
373 389 4.456911 GCACATCCTCTTGAGATTGACAAA 59.543 41.667 0.00 0.00 0.00 2.83
375 391 3.603532 GCACATCCTCTTGAGATTGACA 58.396 45.455 0.00 0.00 0.00 3.58
399 415 0.398318 GCACCTCCAAGAGACCAAGT 59.602 55.000 0.00 0.00 0.00 3.16
402 418 0.471780 TGAGCACCTCCAAGAGACCA 60.472 55.000 0.00 0.00 0.00 4.02
424 440 1.257750 TGCACGCACACCTCTATCCT 61.258 55.000 0.00 0.00 0.00 3.24
457 473 6.994496 GCTCATATATATGCACATACACCCAT 59.006 38.462 16.59 0.00 33.76 4.00
463 479 6.074623 GCAGACGCTCATATATATGCACATAC 60.075 42.308 16.59 7.42 33.76 2.39
475 491 0.596083 GCAGACGCAGACGCTCATAT 60.596 55.000 0.00 0.00 45.53 1.78
528 545 5.688176 GGAAACGCTGCACTTAACAATTTTA 59.312 36.000 0.00 0.00 0.00 1.52
534 551 1.961793 AGGAAACGCTGCACTTAACA 58.038 45.000 0.00 0.00 0.00 2.41
535 552 4.477302 TTAAGGAAACGCTGCACTTAAC 57.523 40.909 0.00 0.00 31.01 2.01
536 553 5.502153 TTTTAAGGAAACGCTGCACTTAA 57.498 34.783 0.00 3.83 33.31 1.85
573 590 7.189512 CGACCTTAATCATTTGAAGGATGTTC 58.810 38.462 6.01 0.00 42.05 3.18
575 592 5.590259 CCGACCTTAATCATTTGAAGGATGT 59.410 40.000 6.01 0.00 42.05 3.06
647 664 2.352388 TGCTCGCCCTATTGTGTTTAC 58.648 47.619 0.00 0.00 0.00 2.01
675 692 1.679153 TGGTTCAGTTTCCTTTTCGCC 59.321 47.619 0.00 0.00 0.00 5.54
769 786 1.956629 GCTGATCGGAAAGGGACGGA 61.957 60.000 5.48 0.00 0.00 4.69
782 799 1.687494 GCGAGACGTGTTGGCTGATC 61.687 60.000 0.00 0.00 0.00 2.92
823 840 1.899054 TGGGAAAAATGACGCGGCA 60.899 52.632 21.39 21.39 0.00 5.69
845 862 4.350245 TGGGGCACGAGCTTATATATAGT 58.650 43.478 4.48 0.00 41.70 2.12
867 884 4.099419 GTGGAGTTTTCTGTGTTTGGGATT 59.901 41.667 0.00 0.00 0.00 3.01
947 964 4.969196 ACGCCTCCACGTGCTGTG 62.969 66.667 10.91 9.45 46.28 3.66
1078 1099 3.360340 GGTGGACGTCGTCGAGGT 61.360 66.667 19.67 19.67 40.62 3.85
1294 1318 4.335647 CAGCGGTTCCACCAGGCT 62.336 66.667 0.00 0.00 38.47 4.58
1474 1498 0.526096 GCGGCGTAAATGTACCTCGA 60.526 55.000 9.37 0.00 0.00 4.04
1695 1722 1.080705 GACCTTCACGTCTGACCGG 60.081 63.158 0.00 0.00 0.00 5.28
1704 1731 0.811915 ATCCAGACTCGACCTTCACG 59.188 55.000 0.00 0.00 0.00 4.35
1815 1842 3.242543 GCTCCTCGTGCTGATATTGTTTG 60.243 47.826 0.00 0.00 0.00 2.93
1988 2015 1.964373 CACCGGTTCTTGAACCCCG 60.964 63.158 22.34 16.21 39.68 5.73
2019 2046 0.610687 CCACTCTCAGGACCTTCACC 59.389 60.000 0.00 0.00 0.00 4.02
2145 2172 1.570813 CAAGCTCAACGCCGATATGA 58.429 50.000 0.00 0.00 40.39 2.15
2217 2244 2.159028 GCACTTGAGGAAGCCTAGGTAG 60.159 54.545 11.31 0.00 31.76 3.18
2387 2418 6.717084 TGACCCTGTATCTGTACTATGATGAG 59.283 42.308 0.00 0.00 0.00 2.90
2396 2427 4.222145 TGGAAACTGACCCTGTATCTGTAC 59.778 45.833 0.00 0.00 0.00 2.90
2399 2481 3.981071 TGGAAACTGACCCTGTATCTG 57.019 47.619 0.00 0.00 0.00 2.90
2401 2483 4.200092 GGAATGGAAACTGACCCTGTATC 58.800 47.826 0.00 0.00 0.00 2.24
2452 2534 2.954318 GTCAATCTACAAGGGCATGCAT 59.046 45.455 21.36 4.13 0.00 3.96
2453 2535 2.290832 TGTCAATCTACAAGGGCATGCA 60.291 45.455 21.36 0.00 0.00 3.96
2454 2536 2.368439 TGTCAATCTACAAGGGCATGC 58.632 47.619 9.90 9.90 0.00 4.06
2455 2537 5.587388 AAATGTCAATCTACAAGGGCATG 57.413 39.130 0.00 0.00 32.02 4.06
2516 2598 6.814146 AGTCTCTTGTATGCTAGTTAACTTGC 59.186 38.462 28.11 28.11 43.36 4.01
2574 2657 6.664816 AGATTATCAATTGTTGGCTTCCTCAA 59.335 34.615 5.13 0.00 0.00 3.02
2619 2702 5.305644 AGAGGGATCGCAGTTATTGATTAGT 59.694 40.000 12.83 0.00 0.00 2.24
2620 2703 5.636965 CAGAGGGATCGCAGTTATTGATTAG 59.363 44.000 12.83 0.00 0.00 1.73
2621 2704 5.511373 CCAGAGGGATCGCAGTTATTGATTA 60.511 44.000 12.83 0.00 35.59 1.75
2622 2705 4.384056 CAGAGGGATCGCAGTTATTGATT 58.616 43.478 12.83 0.00 0.00 2.57
2623 2706 3.244353 CCAGAGGGATCGCAGTTATTGAT 60.244 47.826 12.83 0.00 35.59 2.57
2624 2707 2.103094 CCAGAGGGATCGCAGTTATTGA 59.897 50.000 12.83 0.00 35.59 2.57
2625 2708 2.487934 CCAGAGGGATCGCAGTTATTG 58.512 52.381 12.83 1.24 35.59 1.90
2626 2709 1.202698 GCCAGAGGGATCGCAGTTATT 60.203 52.381 12.83 0.00 35.59 1.40
2627 2710 0.394565 GCCAGAGGGATCGCAGTTAT 59.605 55.000 12.83 0.00 35.59 1.89
2628 2711 0.687757 AGCCAGAGGGATCGCAGTTA 60.688 55.000 12.83 0.00 35.59 2.24
2629 2712 1.992277 AGCCAGAGGGATCGCAGTT 60.992 57.895 12.83 0.00 35.59 3.16
2630 2713 2.364842 AGCCAGAGGGATCGCAGT 60.365 61.111 12.83 0.00 35.59 4.40
2631 2714 2.108566 CAGCCAGAGGGATCGCAG 59.891 66.667 12.83 1.47 35.59 5.18
2632 2715 2.293318 AACAGCCAGAGGGATCGCA 61.293 57.895 12.83 0.00 35.59 5.10
2633 2716 1.817099 CAACAGCCAGAGGGATCGC 60.817 63.158 0.54 0.54 35.59 4.58
2634 2717 1.153289 CCAACAGCCAGAGGGATCG 60.153 63.158 0.00 0.00 35.59 3.69
2635 2718 0.107459 GACCAACAGCCAGAGGGATC 60.107 60.000 0.00 0.00 35.59 3.36
2636 2719 1.903877 CGACCAACAGCCAGAGGGAT 61.904 60.000 0.00 0.00 35.59 3.85
2637 2720 2.583441 CGACCAACAGCCAGAGGGA 61.583 63.158 0.00 0.00 35.59 4.20
2638 2721 2.046892 CGACCAACAGCCAGAGGG 60.047 66.667 0.00 0.00 37.18 4.30
2639 2722 2.743928 GCGACCAACAGCCAGAGG 60.744 66.667 0.00 0.00 0.00 3.69
2640 2723 3.114616 CGCGACCAACAGCCAGAG 61.115 66.667 0.00 0.00 0.00 3.35
2658 2741 3.549150 GAGCAGCACTAGCACGCG 61.549 66.667 3.53 3.53 43.67 6.01
2659 2742 2.433145 TGAGCAGCACTAGCACGC 60.433 61.111 0.00 0.00 45.49 5.34
2660 2743 2.439761 CGTGAGCAGCACTAGCACG 61.440 63.158 0.00 0.00 45.49 5.34
2661 2744 0.667487 TTCGTGAGCAGCACTAGCAC 60.667 55.000 7.91 0.00 45.49 4.40
2662 2745 0.389037 CTTCGTGAGCAGCACTAGCA 60.389 55.000 7.91 0.00 45.49 3.49
2663 2746 1.080995 CCTTCGTGAGCAGCACTAGC 61.081 60.000 7.91 0.00 45.49 3.42
2664 2747 0.244994 ACCTTCGTGAGCAGCACTAG 59.755 55.000 7.91 0.00 45.49 2.57
2665 2748 1.472878 CTACCTTCGTGAGCAGCACTA 59.527 52.381 7.91 0.00 45.49 2.74
2666 2749 0.244994 CTACCTTCGTGAGCAGCACT 59.755 55.000 7.91 0.00 45.49 4.40
2667 2750 0.243907 TCTACCTTCGTGAGCAGCAC 59.756 55.000 0.00 0.07 44.21 4.40
2668 2751 0.528017 CTCTACCTTCGTGAGCAGCA 59.472 55.000 0.00 0.00 0.00 4.41
2669 2752 0.811915 TCTCTACCTTCGTGAGCAGC 59.188 55.000 0.00 0.00 0.00 5.25
2670 2753 1.813178 TGTCTCTACCTTCGTGAGCAG 59.187 52.381 0.00 0.00 0.00 4.24
2671 2754 1.813178 CTGTCTCTACCTTCGTGAGCA 59.187 52.381 0.00 0.00 0.00 4.26
2672 2755 1.133407 CCTGTCTCTACCTTCGTGAGC 59.867 57.143 0.00 0.00 0.00 4.26
2673 2756 2.680841 CTCCTGTCTCTACCTTCGTGAG 59.319 54.545 0.00 0.00 0.00 3.51
2674 2757 2.305052 TCTCCTGTCTCTACCTTCGTGA 59.695 50.000 0.00 0.00 0.00 4.35
2675 2758 2.680841 CTCTCCTGTCTCTACCTTCGTG 59.319 54.545 0.00 0.00 0.00 4.35
2676 2759 2.572556 TCTCTCCTGTCTCTACCTTCGT 59.427 50.000 0.00 0.00 0.00 3.85
2677 2760 3.118555 TCTCTCTCCTGTCTCTACCTTCG 60.119 52.174 0.00 0.00 0.00 3.79
2678 2761 4.163458 TCTCTCTCTCCTGTCTCTACCTTC 59.837 50.000 0.00 0.00 0.00 3.46
2679 2762 4.108570 TCTCTCTCTCCTGTCTCTACCTT 58.891 47.826 0.00 0.00 0.00 3.50
2680 2763 3.731431 TCTCTCTCTCCTGTCTCTACCT 58.269 50.000 0.00 0.00 0.00 3.08
2681 2764 4.642429 GATCTCTCTCTCCTGTCTCTACC 58.358 52.174 0.00 0.00 0.00 3.18
2682 2765 4.307432 CGATCTCTCTCTCCTGTCTCTAC 58.693 52.174 0.00 0.00 0.00 2.59
2683 2766 3.323691 CCGATCTCTCTCTCCTGTCTCTA 59.676 52.174 0.00 0.00 0.00 2.43
2684 2767 2.104792 CCGATCTCTCTCTCCTGTCTCT 59.895 54.545 0.00 0.00 0.00 3.10
2685 2768 2.104111 TCCGATCTCTCTCTCCTGTCTC 59.896 54.545 0.00 0.00 0.00 3.36
2686 2769 2.104792 CTCCGATCTCTCTCTCCTGTCT 59.895 54.545 0.00 0.00 0.00 3.41
2687 2770 2.494059 CTCCGATCTCTCTCTCCTGTC 58.506 57.143 0.00 0.00 0.00 3.51
2688 2771 1.142870 CCTCCGATCTCTCTCTCCTGT 59.857 57.143 0.00 0.00 0.00 4.00
2689 2772 1.142870 ACCTCCGATCTCTCTCTCCTG 59.857 57.143 0.00 0.00 0.00 3.86
2690 2773 1.518367 ACCTCCGATCTCTCTCTCCT 58.482 55.000 0.00 0.00 0.00 3.69
2691 2774 2.635915 TCTACCTCCGATCTCTCTCTCC 59.364 54.545 0.00 0.00 0.00 3.71
2692 2775 4.039973 TCTTCTACCTCCGATCTCTCTCTC 59.960 50.000 0.00 0.00 0.00 3.20
2693 2776 3.971305 TCTTCTACCTCCGATCTCTCTCT 59.029 47.826 0.00 0.00 0.00 3.10
2694 2777 4.345859 TCTTCTACCTCCGATCTCTCTC 57.654 50.000 0.00 0.00 0.00 3.20
2695 2778 4.781775 TTCTTCTACCTCCGATCTCTCT 57.218 45.455 0.00 0.00 0.00 3.10
2696 2779 5.127491 TCTTTCTTCTACCTCCGATCTCTC 58.873 45.833 0.00 0.00 0.00 3.20
2697 2780 5.118729 TCTTTCTTCTACCTCCGATCTCT 57.881 43.478 0.00 0.00 0.00 3.10
2698 2781 5.221165 CCTTCTTTCTTCTACCTCCGATCTC 60.221 48.000 0.00 0.00 0.00 2.75
2699 2782 4.647399 CCTTCTTTCTTCTACCTCCGATCT 59.353 45.833 0.00 0.00 0.00 2.75
2700 2783 4.403113 ACCTTCTTTCTTCTACCTCCGATC 59.597 45.833 0.00 0.00 0.00 3.69
2701 2784 4.160626 CACCTTCTTTCTTCTACCTCCGAT 59.839 45.833 0.00 0.00 0.00 4.18
2702 2785 3.510360 CACCTTCTTTCTTCTACCTCCGA 59.490 47.826 0.00 0.00 0.00 4.55
2703 2786 3.258622 ACACCTTCTTTCTTCTACCTCCG 59.741 47.826 0.00 0.00 0.00 4.63
2704 2787 4.570930 CACACCTTCTTTCTTCTACCTCC 58.429 47.826 0.00 0.00 0.00 4.30
2705 2788 3.997681 GCACACCTTCTTTCTTCTACCTC 59.002 47.826 0.00 0.00 0.00 3.85
2706 2789 3.555168 CGCACACCTTCTTTCTTCTACCT 60.555 47.826 0.00 0.00 0.00 3.08
2707 2790 2.737252 CGCACACCTTCTTTCTTCTACC 59.263 50.000 0.00 0.00 0.00 3.18
2708 2791 3.391049 ACGCACACCTTCTTTCTTCTAC 58.609 45.455 0.00 0.00 0.00 2.59
2709 2792 3.746045 ACGCACACCTTCTTTCTTCTA 57.254 42.857 0.00 0.00 0.00 2.10
2710 2793 2.614057 CAACGCACACCTTCTTTCTTCT 59.386 45.455 0.00 0.00 0.00 2.85
2711 2794 2.612212 TCAACGCACACCTTCTTTCTTC 59.388 45.455 0.00 0.00 0.00 2.87
2712 2795 2.614057 CTCAACGCACACCTTCTTTCTT 59.386 45.455 0.00 0.00 0.00 2.52
2713 2796 2.158957 TCTCAACGCACACCTTCTTTCT 60.159 45.455 0.00 0.00 0.00 2.52
2714 2797 2.210116 TCTCAACGCACACCTTCTTTC 58.790 47.619 0.00 0.00 0.00 2.62
2715 2798 2.325583 TCTCAACGCACACCTTCTTT 57.674 45.000 0.00 0.00 0.00 2.52
2716 2799 2.550830 ATCTCAACGCACACCTTCTT 57.449 45.000 0.00 0.00 0.00 2.52
2717 2800 2.417719 GAATCTCAACGCACACCTTCT 58.582 47.619 0.00 0.00 0.00 2.85
2718 2801 1.126846 CGAATCTCAACGCACACCTTC 59.873 52.381 0.00 0.00 0.00 3.46
2719 2802 1.148310 CGAATCTCAACGCACACCTT 58.852 50.000 0.00 0.00 0.00 3.50
2720 2803 0.033504 ACGAATCTCAACGCACACCT 59.966 50.000 0.00 0.00 0.00 4.00
2721 2804 0.865769 AACGAATCTCAACGCACACC 59.134 50.000 0.00 0.00 0.00 4.16
2722 2805 2.663279 AAACGAATCTCAACGCACAC 57.337 45.000 0.00 0.00 0.00 3.82
2723 2806 2.852901 GCAAAACGAATCTCAACGCACA 60.853 45.455 0.00 0.00 0.00 4.57
2724 2807 1.708680 GCAAAACGAATCTCAACGCAC 59.291 47.619 0.00 0.00 0.00 5.34
2725 2808 1.334599 GGCAAAACGAATCTCAACGCA 60.335 47.619 0.00 0.00 0.00 5.24
2726 2809 1.327507 GGCAAAACGAATCTCAACGC 58.672 50.000 0.00 0.00 0.00 4.84
2727 2810 2.574322 CTGGCAAAACGAATCTCAACG 58.426 47.619 0.00 0.00 0.00 4.10
2728 2811 2.293399 ACCTGGCAAAACGAATCTCAAC 59.707 45.455 0.00 0.00 0.00 3.18
2729 2812 2.293122 CACCTGGCAAAACGAATCTCAA 59.707 45.455 0.00 0.00 0.00 3.02
2730 2813 1.879380 CACCTGGCAAAACGAATCTCA 59.121 47.619 0.00 0.00 0.00 3.27
2731 2814 1.880027 ACACCTGGCAAAACGAATCTC 59.120 47.619 0.00 0.00 0.00 2.75
2732 2815 1.880027 GACACCTGGCAAAACGAATCT 59.120 47.619 0.00 0.00 0.00 2.40
2733 2816 1.606668 TGACACCTGGCAAAACGAATC 59.393 47.619 0.00 0.00 0.00 2.52
2734 2817 1.686355 TGACACCTGGCAAAACGAAT 58.314 45.000 0.00 0.00 0.00 3.34
2735 2818 1.606668 GATGACACCTGGCAAAACGAA 59.393 47.619 0.00 0.00 36.16 3.85
2736 2819 1.234821 GATGACACCTGGCAAAACGA 58.765 50.000 0.00 0.00 36.16 3.85
2737 2820 0.950836 TGATGACACCTGGCAAAACG 59.049 50.000 0.00 0.00 36.16 3.60
2738 2821 2.557924 TCATGATGACACCTGGCAAAAC 59.442 45.455 0.00 0.00 36.16 2.43
2739 2822 2.821378 CTCATGATGACACCTGGCAAAA 59.179 45.455 0.00 0.00 36.16 2.44
2740 2823 2.439409 CTCATGATGACACCTGGCAAA 58.561 47.619 0.00 0.00 36.16 3.68
2741 2824 1.340308 CCTCATGATGACACCTGGCAA 60.340 52.381 0.00 0.00 36.16 4.52
2742 2825 0.253894 CCTCATGATGACACCTGGCA 59.746 55.000 0.00 0.00 37.54 4.92
2743 2826 0.543277 TCCTCATGATGACACCTGGC 59.457 55.000 0.00 0.00 0.00 4.85
2744 2827 2.102757 CTCTCCTCATGATGACACCTGG 59.897 54.545 0.00 0.00 0.00 4.45
2745 2828 2.102757 CCTCTCCTCATGATGACACCTG 59.897 54.545 0.00 0.00 0.00 4.00
2746 2829 2.396608 CCTCTCCTCATGATGACACCT 58.603 52.381 0.00 0.00 0.00 4.00
2747 2830 1.415659 CCCTCTCCTCATGATGACACC 59.584 57.143 0.00 0.00 0.00 4.16
2748 2831 2.102252 GACCCTCTCCTCATGATGACAC 59.898 54.545 0.00 0.00 0.00 3.67
2749 2832 2.392662 GACCCTCTCCTCATGATGACA 58.607 52.381 0.00 0.00 0.00 3.58
2750 2833 1.339610 CGACCCTCTCCTCATGATGAC 59.660 57.143 0.00 0.00 0.00 3.06
2751 2834 1.697284 CGACCCTCTCCTCATGATGA 58.303 55.000 0.00 0.00 0.00 2.92
2752 2835 0.033228 GCGACCCTCTCCTCATGATG 59.967 60.000 0.00 0.00 0.00 3.07
2753 2836 0.397675 TGCGACCCTCTCCTCATGAT 60.398 55.000 0.00 0.00 0.00 2.45
2754 2837 1.000359 TGCGACCCTCTCCTCATGA 60.000 57.895 0.00 0.00 0.00 3.07
2755 2838 1.142748 GTGCGACCCTCTCCTCATG 59.857 63.158 0.00 0.00 0.00 3.07
2756 2839 2.418910 CGTGCGACCCTCTCCTCAT 61.419 63.158 0.00 0.00 0.00 2.90
2757 2840 3.062466 CGTGCGACCCTCTCCTCA 61.062 66.667 0.00 0.00 0.00 3.86
2758 2841 3.827898 CCGTGCGACCCTCTCCTC 61.828 72.222 0.00 0.00 0.00 3.71
2779 2862 2.810403 GACCGGGTCGTACATCCC 59.190 66.667 12.12 11.16 40.26 3.85
2787 2870 4.498682 AAGAAATCTTATACGACCGGGTCG 60.499 45.833 39.63 39.63 46.52 4.79
2788 2871 4.581077 AGAAATCTTATACGACCGGGTC 57.419 45.455 17.38 17.38 0.00 4.46
2789 2872 5.349061 AAAGAAATCTTATACGACCGGGT 57.651 39.130 6.32 0.00 34.61 5.28
2790 2873 4.748600 GGAAAGAAATCTTATACGACCGGG 59.251 45.833 6.32 0.00 34.61 5.73
2791 2874 5.353938 TGGAAAGAAATCTTATACGACCGG 58.646 41.667 0.00 0.00 34.61 5.28
2792 2875 7.866393 ACTATGGAAAGAAATCTTATACGACCG 59.134 37.037 0.00 0.00 34.61 4.79
2793 2876 8.979574 CACTATGGAAAGAAATCTTATACGACC 58.020 37.037 0.00 0.00 34.61 4.79
2794 2877 8.979574 CCACTATGGAAAGAAATCTTATACGAC 58.020 37.037 0.00 0.00 40.96 4.34
2795 2878 8.701895 ACCACTATGGAAAGAAATCTTATACGA 58.298 33.333 0.84 0.00 40.96 3.43
2796 2879 8.888579 ACCACTATGGAAAGAAATCTTATACG 57.111 34.615 0.84 0.00 40.96 3.06
2819 2902 3.918417 GAGCCATCCTCTTACGGGTACC 61.918 59.091 2.17 2.17 40.86 3.34
2820 2903 1.340568 GAGCCATCCTCTTACGGGTAC 59.659 57.143 0.00 0.00 37.60 3.34
2821 2904 1.063492 TGAGCCATCCTCTTACGGGTA 60.063 52.381 0.00 0.00 41.35 3.69
2822 2905 0.325296 TGAGCCATCCTCTTACGGGT 60.325 55.000 0.00 0.00 41.35 5.28
2823 2906 1.051812 ATGAGCCATCCTCTTACGGG 58.948 55.000 0.00 0.00 41.35 5.28
2824 2907 2.894126 ACTATGAGCCATCCTCTTACGG 59.106 50.000 0.00 0.00 41.35 4.02
2825 2908 3.858877 GCACTATGAGCCATCCTCTTACG 60.859 52.174 0.00 0.00 41.35 3.18
2826 2909 3.070159 TGCACTATGAGCCATCCTCTTAC 59.930 47.826 0.00 0.00 41.35 2.34
2827 2910 3.308401 TGCACTATGAGCCATCCTCTTA 58.692 45.455 0.00 0.00 41.35 2.10
2828 2911 2.121948 TGCACTATGAGCCATCCTCTT 58.878 47.619 0.00 0.00 41.35 2.85
2829 2912 1.798626 TGCACTATGAGCCATCCTCT 58.201 50.000 0.00 0.00 41.35 3.69
2830 2913 2.158842 AGTTGCACTATGAGCCATCCTC 60.159 50.000 0.00 0.00 41.15 3.71
2831 2914 1.842562 AGTTGCACTATGAGCCATCCT 59.157 47.619 0.00 0.00 0.00 3.24
2832 2915 2.338577 AGTTGCACTATGAGCCATCC 57.661 50.000 0.00 0.00 0.00 3.51
2833 2916 5.528690 TCAATAAGTTGCACTATGAGCCATC 59.471 40.000 0.00 0.00 35.26 3.51
2834 2917 5.439721 TCAATAAGTTGCACTATGAGCCAT 58.560 37.500 0.00 0.00 35.26 4.40
2835 2918 4.842574 TCAATAAGTTGCACTATGAGCCA 58.157 39.130 0.00 0.00 35.26 4.75
2836 2919 6.382869 AATCAATAAGTTGCACTATGAGCC 57.617 37.500 0.00 0.00 35.26 4.70
2837 2920 8.066595 CACTAATCAATAAGTTGCACTATGAGC 58.933 37.037 0.00 0.00 35.26 4.26
2838 2921 9.317936 TCACTAATCAATAAGTTGCACTATGAG 57.682 33.333 0.00 0.00 35.26 2.90
2839 2922 9.836864 ATCACTAATCAATAAGTTGCACTATGA 57.163 29.630 0.00 0.00 35.26 2.15
2841 2924 9.836864 TGATCACTAATCAATAAGTTGCACTAT 57.163 29.630 0.00 0.00 41.49 2.12
2842 2925 9.098355 GTGATCACTAATCAATAAGTTGCACTA 57.902 33.333 18.83 0.00 45.88 2.74
2843 2926 7.066284 GGTGATCACTAATCAATAAGTTGCACT 59.934 37.037 24.50 0.00 45.88 4.40
2844 2927 7.148255 TGGTGATCACTAATCAATAAGTTGCAC 60.148 37.037 24.50 2.81 45.88 4.57
2845 2928 6.883756 TGGTGATCACTAATCAATAAGTTGCA 59.116 34.615 24.50 6.06 45.88 4.08
2846 2929 7.320443 TGGTGATCACTAATCAATAAGTTGC 57.680 36.000 24.50 3.51 45.88 4.17
2849 2932 9.770097 CACTATGGTGATCACTAATCAATAAGT 57.230 33.333 24.50 14.42 45.88 2.24
2850 2933 9.770097 ACACTATGGTGATCACTAATCAATAAG 57.230 33.333 24.50 13.90 45.88 1.73
2851 2934 9.546428 CACACTATGGTGATCACTAATCAATAA 57.454 33.333 24.50 4.11 45.88 1.40
2852 2935 8.923270 TCACACTATGGTGATCACTAATCAATA 58.077 33.333 24.50 7.46 45.88 1.90
2853 2936 7.795047 TCACACTATGGTGATCACTAATCAAT 58.205 34.615 24.50 6.65 45.88 2.57
2854 2937 7.181569 TCACACTATGGTGATCACTAATCAA 57.818 36.000 24.50 6.32 45.88 2.57
2855 2938 6.790232 TCACACTATGGTGATCACTAATCA 57.210 37.500 24.50 14.51 45.61 2.57
2856 2939 9.778426 GGGGTCACACTATGGTGATCACTAATC 62.778 48.148 24.50 9.17 46.49 1.75
2857 2940 8.100366 GGGGTCACACTATGGTGATCACTAAT 62.100 46.154 24.50 19.44 46.49 1.73
2858 2941 6.858790 GGGGTCACACTATGGTGATCACTAA 61.859 48.000 24.50 14.11 46.49 2.24
2859 2942 5.420607 GGGGTCACACTATGGTGATCACTA 61.421 50.000 24.50 19.95 46.49 2.74
2860 2943 4.704374 GGGGTCACACTATGGTGATCACT 61.704 52.174 24.50 9.24 46.49 3.41
2865 2948 0.118346 AGGGGGTCACACTATGGTGA 59.882 55.000 16.98 4.41 45.61 4.02
2867 2950 0.620700 GGAGGGGGTCACACTATGGT 60.621 60.000 0.00 0.00 0.00 3.55
2868 2951 1.345715 GGGAGGGGGTCACACTATGG 61.346 65.000 0.00 0.00 0.00 2.74
2869 2952 1.345715 GGGGAGGGGGTCACACTATG 61.346 65.000 0.00 0.00 0.00 2.23
2870 2953 1.004361 GGGGAGGGGGTCACACTAT 59.996 63.158 0.00 0.00 0.00 2.12
2871 2954 2.177529 GAGGGGAGGGGGTCACACTA 62.178 65.000 0.00 0.00 0.00 2.74
2872 2955 3.542602 AGGGGAGGGGGTCACACT 61.543 66.667 0.00 0.00 0.00 3.55
2873 2956 3.009714 GAGGGGAGGGGGTCACAC 61.010 72.222 0.00 0.00 0.00 3.82
2874 2957 3.208592 AGAGGGGAGGGGGTCACA 61.209 66.667 0.00 0.00 0.00 3.58
2875 2958 2.365768 GAGAGGGGAGGGGGTCAC 60.366 72.222 0.00 0.00 0.00 3.67
2876 2959 2.874245 TGAGAGGGGAGGGGGTCA 60.874 66.667 0.00 0.00 0.00 4.02
2877 2960 2.365768 GTGAGAGGGGAGGGGGTC 60.366 72.222 0.00 0.00 0.00 4.46
2878 2961 4.400251 CGTGAGAGGGGAGGGGGT 62.400 72.222 0.00 0.00 0.00 4.95
2879 2962 4.075793 TCGTGAGAGGGGAGGGGG 62.076 72.222 0.00 0.00 34.84 5.40
2911 2994 4.554036 GATCGGCAGGAGGGTGGC 62.554 72.222 0.00 0.00 39.60 5.01
2912 2995 0.833834 ATAGATCGGCAGGAGGGTGG 60.834 60.000 0.00 0.00 0.00 4.61
2913 2996 0.319728 CATAGATCGGCAGGAGGGTG 59.680 60.000 0.00 0.00 0.00 4.61
2914 2997 1.476007 GCATAGATCGGCAGGAGGGT 61.476 60.000 2.75 0.00 0.00 4.34
2915 2998 1.294780 GCATAGATCGGCAGGAGGG 59.705 63.158 2.75 0.00 0.00 4.30
2916 2999 1.294780 GGCATAGATCGGCAGGAGG 59.705 63.158 8.86 0.00 0.00 4.30
2917 3000 1.080230 CGGCATAGATCGGCAGGAG 60.080 63.158 8.86 0.00 0.00 3.69
2918 3001 3.051210 CGGCATAGATCGGCAGGA 58.949 61.111 8.86 0.00 0.00 3.86
2919 3002 2.740055 GCGGCATAGATCGGCAGG 60.740 66.667 8.86 2.48 0.00 4.85
2923 3006 2.357517 GGTGGCGGCATAGATCGG 60.358 66.667 17.19 0.00 0.00 4.18
2924 3007 2.357517 GGGTGGCGGCATAGATCG 60.358 66.667 17.19 0.00 0.00 3.69
2925 3008 1.004440 GAGGGTGGCGGCATAGATC 60.004 63.158 17.19 7.80 0.00 2.75
2926 3009 2.520536 GGAGGGTGGCGGCATAGAT 61.521 63.158 17.19 1.20 0.00 1.98
2927 3010 3.161450 GGAGGGTGGCGGCATAGA 61.161 66.667 17.19 0.00 0.00 1.98
2928 3011 4.256180 GGGAGGGTGGCGGCATAG 62.256 72.222 17.19 0.00 0.00 2.23
2929 3012 4.815973 AGGGAGGGTGGCGGCATA 62.816 66.667 17.19 0.00 0.00 3.14
2936 3019 4.825679 GGGGAGGAGGGAGGGTGG 62.826 77.778 0.00 0.00 0.00 4.61
2937 3020 4.825679 GGGGGAGGAGGGAGGGTG 62.826 77.778 0.00 0.00 0.00 4.61
2955 3038 4.834453 CTGGCAGCAGCGAGGGAG 62.834 72.222 0.00 0.00 42.20 4.30
2957 3040 4.834453 CTCTGGCAGCAGCGAGGG 62.834 72.222 10.34 5.90 45.48 4.30
2958 3041 4.834453 CCTCTGGCAGCAGCGAGG 62.834 72.222 10.34 11.35 45.48 4.63
2959 3042 4.834453 CCCTCTGGCAGCAGCGAG 62.834 72.222 10.34 6.78 46.64 5.03
2986 3069 3.207547 GACACCGGTTGGGCTTTGC 62.208 63.158 2.97 0.00 40.62 3.68
2987 3070 2.903547 CGACACCGGTTGGGCTTTG 61.904 63.158 2.97 0.00 40.62 2.77
2988 3071 2.593436 CGACACCGGTTGGGCTTT 60.593 61.111 2.97 0.00 40.62 3.51
2998 3081 4.980805 CACCCACCACCGACACCG 62.981 72.222 0.00 0.00 0.00 4.94
2999 3082 4.636435 CCACCCACCACCGACACC 62.636 72.222 0.00 0.00 0.00 4.16
3000 3083 4.636435 CCCACCCACCACCGACAC 62.636 72.222 0.00 0.00 0.00 3.67
3007 3090 4.601297 TAGCACCCCCACCCACCA 62.601 66.667 0.00 0.00 0.00 4.17
3008 3091 3.728373 CTAGCACCCCCACCCACC 61.728 72.222 0.00 0.00 0.00 4.61
3009 3092 3.728373 CCTAGCACCCCCACCCAC 61.728 72.222 0.00 0.00 0.00 4.61
3010 3093 2.203095 ATACCTAGCACCCCCACCCA 62.203 60.000 0.00 0.00 0.00 4.51
3011 3094 0.991893 AATACCTAGCACCCCCACCC 60.992 60.000 0.00 0.00 0.00 4.61
3012 3095 0.472898 GAATACCTAGCACCCCCACC 59.527 60.000 0.00 0.00 0.00 4.61
3013 3096 0.472898 GGAATACCTAGCACCCCCAC 59.527 60.000 0.00 0.00 0.00 4.61
3014 3097 0.696485 GGGAATACCTAGCACCCCCA 60.696 60.000 0.00 0.00 35.00 4.96
3015 3098 2.152291 GGGAATACCTAGCACCCCC 58.848 63.158 0.00 0.00 35.00 5.40
3017 3100 1.420514 GAAGGGGAATACCTAGCACCC 59.579 57.143 0.00 0.00 40.87 4.61
3018 3101 1.420514 GGAAGGGGAATACCTAGCACC 59.579 57.143 0.00 0.00 40.87 5.01
3019 3102 1.070289 CGGAAGGGGAATACCTAGCAC 59.930 57.143 0.00 0.00 40.87 4.40
3020 3103 1.420430 CGGAAGGGGAATACCTAGCA 58.580 55.000 0.00 0.00 40.87 3.49
3021 3104 0.035036 GCGGAAGGGGAATACCTAGC 59.965 60.000 0.00 0.00 40.87 3.42
3022 3105 0.317479 CGCGGAAGGGGAATACCTAG 59.683 60.000 0.00 0.00 40.87 3.02
3023 3106 0.106066 TCGCGGAAGGGGAATACCTA 60.106 55.000 6.13 0.00 40.87 3.08
3024 3107 0.979187 TTCGCGGAAGGGGAATACCT 60.979 55.000 6.13 0.00 42.05 3.08
3025 3108 1.523524 TTCGCGGAAGGGGAATACC 59.476 57.895 6.13 0.00 42.05 2.73
3060 3143 2.572284 CCCTGACCCGTCGAGAAC 59.428 66.667 0.00 0.00 0.00 3.01
3061 3144 3.379445 GCCCTGACCCGTCGAGAA 61.379 66.667 0.00 0.00 0.00 2.87
3106 3189 4.124351 CAACGCCCCATGCAGCAG 62.124 66.667 0.00 0.00 41.33 4.24
3127 3210 2.434884 ATCACGCAGCCCTTCACG 60.435 61.111 0.00 0.00 0.00 4.35
3128 3211 2.401766 CCATCACGCAGCCCTTCAC 61.402 63.158 0.00 0.00 0.00 3.18
3129 3212 2.046023 CCATCACGCAGCCCTTCA 60.046 61.111 0.00 0.00 0.00 3.02
3130 3213 2.825836 CCCATCACGCAGCCCTTC 60.826 66.667 0.00 0.00 0.00 3.46
3131 3214 3.329889 TCCCATCACGCAGCCCTT 61.330 61.111 0.00 0.00 0.00 3.95
3132 3215 3.790437 CTCCCATCACGCAGCCCT 61.790 66.667 0.00 0.00 0.00 5.19
3133 3216 4.864334 CCTCCCATCACGCAGCCC 62.864 72.222 0.00 0.00 0.00 5.19
3134 3217 4.864334 CCCTCCCATCACGCAGCC 62.864 72.222 0.00 0.00 0.00 4.85
3135 3218 4.864334 CCCCTCCCATCACGCAGC 62.864 72.222 0.00 0.00 0.00 5.25
3136 3219 4.864334 GCCCCTCCCATCACGCAG 62.864 72.222 0.00 0.00 0.00 5.18
3139 3222 4.838152 CACGCCCCTCCCATCACG 62.838 72.222 0.00 0.00 0.00 4.35
3161 3244 4.162690 AGATCCGGCCGCCAACTC 62.163 66.667 22.85 10.93 0.00 3.01
3162 3245 4.473520 CAGATCCGGCCGCCAACT 62.474 66.667 22.85 12.96 0.00 3.16
3171 3254 4.227134 CCTGCCGACCAGATCCGG 62.227 72.222 0.00 0.00 44.64 5.14
3172 3255 4.899239 GCCTGCCGACCAGATCCG 62.899 72.222 4.84 0.00 44.64 4.18
3173 3256 4.899239 CGCCTGCCGACCAGATCC 62.899 72.222 4.84 0.00 44.64 3.36
3174 3257 4.899239 CCGCCTGCCGACCAGATC 62.899 72.222 4.84 0.00 44.64 2.75
3190 3273 3.384532 TAACCTCCGACCCGTGCC 61.385 66.667 0.00 0.00 0.00 5.01
3191 3274 2.125793 GTAACCTCCGACCCGTGC 60.126 66.667 0.00 0.00 0.00 5.34
3192 3275 1.214589 CAGTAACCTCCGACCCGTG 59.785 63.158 0.00 0.00 0.00 4.94
3193 3276 2.643232 GCAGTAACCTCCGACCCGT 61.643 63.158 0.00 0.00 0.00 5.28
3194 3277 2.183555 GCAGTAACCTCCGACCCG 59.816 66.667 0.00 0.00 0.00 5.28
3195 3278 1.516423 GAGCAGTAACCTCCGACCC 59.484 63.158 0.00 0.00 0.00 4.46
3196 3279 1.516423 GGAGCAGTAACCTCCGACC 59.484 63.158 0.00 0.00 39.50 4.79
3200 3283 0.542333 GAAGGGGAGCAGTAACCTCC 59.458 60.000 0.00 0.00 46.54 4.30
3201 3284 0.542333 GGAAGGGGAGCAGTAACCTC 59.458 60.000 0.00 0.00 31.69 3.85
3202 3285 1.265454 CGGAAGGGGAGCAGTAACCT 61.265 60.000 0.00 0.00 34.04 3.50
3203 3286 1.221021 CGGAAGGGGAGCAGTAACC 59.779 63.158 0.00 0.00 0.00 2.85
3204 3287 4.934989 CGGAAGGGGAGCAGTAAC 57.065 61.111 0.00 0.00 0.00 2.50
3216 3299 2.463589 TTAGCCACTGCCACCGGAAG 62.464 60.000 9.46 0.00 38.69 3.46
3217 3300 2.463589 CTTAGCCACTGCCACCGGAA 62.464 60.000 9.46 0.00 38.69 4.30
3218 3301 2.925706 TTAGCCACTGCCACCGGA 60.926 61.111 9.46 0.00 38.69 5.14
3219 3302 2.436646 CTTAGCCACTGCCACCGG 60.437 66.667 0.00 0.00 38.69 5.28
3220 3303 2.436646 CCTTAGCCACTGCCACCG 60.437 66.667 0.00 0.00 38.69 4.94
3221 3304 2.044946 CCCTTAGCCACTGCCACC 60.045 66.667 0.00 0.00 38.69 4.61
3222 3305 2.751837 GCCCTTAGCCACTGCCAC 60.752 66.667 0.00 0.00 38.69 5.01
3223 3306 4.408821 CGCCCTTAGCCACTGCCA 62.409 66.667 0.00 0.00 38.78 4.92
3225 3308 4.410400 ACCGCCCTTAGCCACTGC 62.410 66.667 0.00 0.00 38.78 4.40
3226 3309 2.436646 CACCGCCCTTAGCCACTG 60.437 66.667 0.00 0.00 38.78 3.66
3227 3310 3.717294 CCACCGCCCTTAGCCACT 61.717 66.667 0.00 0.00 38.78 4.00
3228 3311 4.029809 ACCACCGCCCTTAGCCAC 62.030 66.667 0.00 0.00 38.78 5.01
3229 3312 4.028490 CACCACCGCCCTTAGCCA 62.028 66.667 0.00 0.00 38.78 4.75
3230 3313 4.796495 CCACCACCGCCCTTAGCC 62.796 72.222 0.00 0.00 38.78 3.93
3231 3314 3.682292 CTCCACCACCGCCCTTAGC 62.682 68.421 0.00 0.00 38.52 3.09
3232 3315 2.584608 CTCCACCACCGCCCTTAG 59.415 66.667 0.00 0.00 0.00 2.18
3233 3316 3.712907 GCTCCACCACCGCCCTTA 61.713 66.667 0.00 0.00 0.00 2.69
3237 3320 4.767255 CAGAGCTCCACCACCGCC 62.767 72.222 10.93 0.00 0.00 6.13
3239 3322 4.767255 GGCAGAGCTCCACCACCG 62.767 72.222 10.93 0.00 0.00 4.94
3240 3323 3.322318 GAGGCAGAGCTCCACCACC 62.322 68.421 21.35 11.55 0.00 4.61
3241 3324 2.267324 GAGGCAGAGCTCCACCAC 59.733 66.667 21.35 13.34 0.00 4.16
3242 3325 3.385384 CGAGGCAGAGCTCCACCA 61.385 66.667 21.35 0.00 0.00 4.17
3243 3326 2.844072 GAACGAGGCAGAGCTCCACC 62.844 65.000 10.93 12.47 0.00 4.61
3244 3327 1.446966 GAACGAGGCAGAGCTCCAC 60.447 63.158 10.93 2.06 0.00 4.02
3245 3328 2.973899 GAACGAGGCAGAGCTCCA 59.026 61.111 10.93 0.00 0.00 3.86
3246 3329 2.202676 CGAACGAGGCAGAGCTCC 60.203 66.667 10.93 0.00 0.00 4.70
3247 3330 2.883253 GCGAACGAGGCAGAGCTC 60.883 66.667 5.27 5.27 0.00 4.09
3248 3331 4.785512 CGCGAACGAGGCAGAGCT 62.786 66.667 0.00 0.00 43.93 4.09
3250 3333 3.175240 CACGCGAACGAGGCAGAG 61.175 66.667 15.93 0.00 43.93 3.35
3251 3334 3.891586 GACACGCGAACGAGGCAGA 62.892 63.158 15.93 0.00 43.93 4.26
3252 3335 3.470567 GACACGCGAACGAGGCAG 61.471 66.667 15.93 0.00 43.93 4.85
3253 3336 3.891586 GAGACACGCGAACGAGGCA 62.892 63.158 15.93 0.00 40.79 4.75
3254 3337 3.173240 GAGACACGCGAACGAGGC 61.173 66.667 15.93 0.00 43.93 4.70
3255 3338 1.154016 ATGAGACACGCGAACGAGG 60.154 57.895 15.93 0.00 43.93 4.63
3256 3339 0.729478 ACATGAGACACGCGAACGAG 60.729 55.000 15.93 0.00 43.93 4.18
3257 3340 1.001745 CACATGAGACACGCGAACGA 61.002 55.000 15.93 0.00 43.93 3.85
3259 3342 1.781555 CCACATGAGACACGCGAAC 59.218 57.895 15.93 3.14 0.00 3.95
3260 3343 2.027073 GCCACATGAGACACGCGAA 61.027 57.895 15.93 0.00 0.00 4.70
3261 3344 2.432456 GCCACATGAGACACGCGA 60.432 61.111 15.93 0.00 0.00 5.87
3262 3345 2.102438 ATGCCACATGAGACACGCG 61.102 57.895 3.53 3.53 0.00 6.01
3263 3346 1.426621 CATGCCACATGAGACACGC 59.573 57.895 0.00 0.00 0.00 5.34
3264 3347 0.674581 ACCATGCCACATGAGACACG 60.675 55.000 9.10 0.00 0.00 4.49
3265 3348 2.283298 CTACCATGCCACATGAGACAC 58.717 52.381 9.10 0.00 0.00 3.67
3266 3349 1.407299 GCTACCATGCCACATGAGACA 60.407 52.381 9.10 0.00 0.00 3.41
3267 3350 1.303309 GCTACCATGCCACATGAGAC 58.697 55.000 9.10 0.00 0.00 3.36
3268 3351 0.179076 CGCTACCATGCCACATGAGA 60.179 55.000 9.10 0.00 0.00 3.27
3269 3352 1.162181 CCGCTACCATGCCACATGAG 61.162 60.000 9.10 1.12 0.00 2.90
3270 3353 1.153188 CCGCTACCATGCCACATGA 60.153 57.895 9.10 0.00 0.00 3.07
3271 3354 2.188829 CCCGCTACCATGCCACATG 61.189 63.158 0.48 0.48 0.00 3.21
3272 3355 2.192979 CCCGCTACCATGCCACAT 59.807 61.111 0.00 0.00 0.00 3.21
3273 3356 4.794648 GCCCGCTACCATGCCACA 62.795 66.667 0.00 0.00 0.00 4.17
3281 3364 4.971125 GATCTGCCGCCCGCTACC 62.971 72.222 0.00 0.00 38.78 3.18
3287 3370 3.581687 GAGATCCGATCTGCCGCCC 62.582 68.421 15.85 0.00 40.38 6.13
3288 3371 2.048690 GAGATCCGATCTGCCGCC 60.049 66.667 15.85 0.00 40.38 6.13
3289 3372 2.048690 GGAGATCCGATCTGCCGC 60.049 66.667 15.85 1.20 41.33 6.53
3299 3382 4.918201 CTTGCCGCCCGGAGATCC 62.918 72.222 11.48 0.00 37.50 3.36
3300 3383 4.162690 ACTTGCCGCCCGGAGATC 62.163 66.667 11.48 0.00 37.50 2.75
3301 3384 4.473520 CACTTGCCGCCCGGAGAT 62.474 66.667 11.48 0.00 37.50 2.75
3313 3396 3.414700 GACGACTGCCGCCACTTG 61.415 66.667 0.00 0.00 43.32 3.16
3314 3397 3.240134 ATGACGACTGCCGCCACTT 62.240 57.895 0.00 0.00 43.32 3.16
3315 3398 3.695606 ATGACGACTGCCGCCACT 61.696 61.111 0.00 0.00 43.32 4.00
3316 3399 3.490759 CATGACGACTGCCGCCAC 61.491 66.667 0.00 0.00 43.32 5.01
3319 3402 3.857854 CAGCATGACGACTGCCGC 61.858 66.667 0.00 0.00 43.32 6.53
3323 3406 2.747822 GGCTGCAGCATGACGACTG 61.748 63.158 37.63 0.00 44.36 3.51
3324 3407 2.435586 GGCTGCAGCATGACGACT 60.436 61.111 37.63 0.00 44.36 4.18
3325 3408 3.857854 CGGCTGCAGCATGACGAC 61.858 66.667 37.63 18.73 44.36 4.34
3328 3411 3.873883 GAGCGGCTGCAGCATGAC 61.874 66.667 37.63 23.25 46.23 3.06
3329 3412 3.905437 TTGAGCGGCTGCAGCATGA 62.905 57.895 37.63 16.34 46.23 3.07
3330 3413 3.436924 TTGAGCGGCTGCAGCATG 61.437 61.111 37.63 29.29 46.23 4.06
3331 3414 3.437795 GTTGAGCGGCTGCAGCAT 61.438 61.111 37.63 23.85 46.23 3.79
3334 3417 3.123620 GAGGTTGAGCGGCTGCAG 61.124 66.667 21.93 10.11 46.23 4.41
3335 3418 3.258228 ATGAGGTTGAGCGGCTGCA 62.258 57.895 21.93 2.28 46.23 4.41
3336 3419 2.437359 ATGAGGTTGAGCGGCTGC 60.437 61.111 10.33 10.33 43.24 5.25
3337 3420 0.957395 AACATGAGGTTGAGCGGCTG 60.957 55.000 7.50 0.00 38.60 4.85
3338 3421 0.674895 GAACATGAGGTTGAGCGGCT 60.675 55.000 0.00 0.00 40.63 5.52
3339 3422 1.796796 GAACATGAGGTTGAGCGGC 59.203 57.895 0.00 0.00 40.63 6.53
3340 3423 1.361668 CCGAACATGAGGTTGAGCGG 61.362 60.000 0.00 0.00 40.63 5.52
3341 3424 1.970917 GCCGAACATGAGGTTGAGCG 61.971 60.000 0.00 0.00 40.63 5.03
3342 3425 0.674895 AGCCGAACATGAGGTTGAGC 60.675 55.000 0.00 0.00 40.63 4.26
3343 3426 1.734465 GAAGCCGAACATGAGGTTGAG 59.266 52.381 0.00 0.00 40.63 3.02
3344 3427 1.808411 GAAGCCGAACATGAGGTTGA 58.192 50.000 0.00 0.00 40.63 3.18
3345 3428 0.443869 CGAAGCCGAACATGAGGTTG 59.556 55.000 0.00 0.00 40.63 3.77
3346 3429 0.673644 CCGAAGCCGAACATGAGGTT 60.674 55.000 0.00 0.00 44.10 3.50
3347 3430 1.079127 CCGAAGCCGAACATGAGGT 60.079 57.895 0.00 0.00 38.22 3.85
3348 3431 0.391130 TTCCGAAGCCGAACATGAGG 60.391 55.000 0.00 0.51 38.22 3.86
3349 3432 0.721718 GTTCCGAAGCCGAACATGAG 59.278 55.000 0.00 0.00 38.22 2.90
3350 3433 0.034198 TGTTCCGAAGCCGAACATGA 59.966 50.000 0.00 0.00 38.22 3.07
3351 3434 0.165944 GTGTTCCGAAGCCGAACATG 59.834 55.000 6.66 0.00 37.76 3.21
3352 3435 0.250124 TGTGTTCCGAAGCCGAACAT 60.250 50.000 6.66 0.00 37.76 2.71
3353 3436 0.878523 CTGTGTTCCGAAGCCGAACA 60.879 55.000 0.00 0.00 38.22 3.18
3354 3437 0.878961 ACTGTGTTCCGAAGCCGAAC 60.879 55.000 0.00 0.00 38.22 3.95
3355 3438 0.878523 CACTGTGTTCCGAAGCCGAA 60.879 55.000 0.00 0.00 38.22 4.30
3356 3439 1.300620 CACTGTGTTCCGAAGCCGA 60.301 57.895 0.00 0.00 38.22 5.54
3357 3440 0.670546 ATCACTGTGTTCCGAAGCCG 60.671 55.000 7.79 0.00 0.00 5.52
3358 3441 0.798776 CATCACTGTGTTCCGAAGCC 59.201 55.000 7.79 0.00 0.00 4.35
3359 3442 0.798776 CCATCACTGTGTTCCGAAGC 59.201 55.000 7.79 0.00 0.00 3.86
3360 3443 1.800586 CACCATCACTGTGTTCCGAAG 59.199 52.381 7.79 0.00 0.00 3.79
3361 3444 1.542328 CCACCATCACTGTGTTCCGAA 60.542 52.381 7.79 0.00 31.71 4.30
3362 3445 0.034756 CCACCATCACTGTGTTCCGA 59.965 55.000 7.79 0.00 31.71 4.55
3363 3446 0.250295 ACCACCATCACTGTGTTCCG 60.250 55.000 7.79 0.00 31.71 4.30
3364 3447 1.202758 TGACCACCATCACTGTGTTCC 60.203 52.381 7.79 0.00 31.71 3.62
3365 3448 2.254546 TGACCACCATCACTGTGTTC 57.745 50.000 7.79 0.00 31.71 3.18
3366 3449 2.957402 ATGACCACCATCACTGTGTT 57.043 45.000 7.79 0.00 31.71 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.