Multiple sequence alignment - TraesCS4D01G072900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G072900 chr4D 100.000 2162 0 0 1 2162 47555172 47553011 0.000000e+00 3993.0
1 TraesCS4D01G072900 chr4D 84.404 109 14 2 2051 2158 169122895 169123001 1.060000e-18 104.0
2 TraesCS4D01G072900 chr4A 83.805 1556 166 37 225 1710 550489886 550488347 0.000000e+00 1399.0
3 TraesCS4D01G072900 chr4A 86.979 192 25 0 6 197 722797729 722797920 1.300000e-52 217.0
4 TraesCS4D01G072900 chr6A 78.299 1152 155 42 1045 2140 60423211 60422099 0.000000e+00 654.0
5 TraesCS4D01G072900 chr6A 95.455 44 2 0 2050 2093 90219465 90219422 1.070000e-08 71.3
6 TraesCS4D01G072900 chr4B 77.657 1016 145 39 1042 2009 69374177 69375158 5.250000e-151 544.0
7 TraesCS4D01G072900 chr4B 85.849 106 12 2 2054 2158 215918430 215918327 2.270000e-20 110.0
8 TraesCS4D01G072900 chr2D 91.053 190 11 6 9 197 404392600 404392416 3.560000e-63 252.0
9 TraesCS4D01G072900 chr2D 85.784 204 21 5 4 202 14765530 14765330 2.170000e-50 209.0
10 TraesCS4D01G072900 chr2B 88.060 201 18 6 6 203 788226276 788226473 1.290000e-57 233.0
11 TraesCS4D01G072900 chr7A 87.562 201 21 4 1 201 408691364 408691168 1.670000e-56 230.0
12 TraesCS4D01G072900 chr7A 86.224 196 22 3 4 197 30155505 30155697 7.820000e-50 207.0
13 TraesCS4D01G072900 chr7B 86.294 197 25 2 6 200 2130664 2130468 1.680000e-51 213.0
14 TraesCS4D01G072900 chr5B 86.667 195 21 4 6 198 418551840 418552031 6.050000e-51 211.0
15 TraesCS4D01G072900 chr3A 86.224 196 24 3 6 198 40814109 40814304 2.170000e-50 209.0
16 TraesCS4D01G072900 chr3A 84.375 96 12 2 2063 2157 45583762 45583855 8.220000e-15 91.6
17 TraesCS4D01G072900 chr2A 90.580 138 13 0 2003 2140 36919459 36919322 1.320000e-42 183.0
18 TraesCS4D01G072900 chr3B 83.929 112 15 2 2051 2161 665451101 665451210 1.060000e-18 104.0
19 TraesCS4D01G072900 chr6D 93.750 48 2 1 2050 2096 73634048 73634001 1.070000e-08 71.3
20 TraesCS4D01G072900 chrUn 89.583 48 4 1 2050 2096 32515267 32515220 2.320000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G072900 chr4D 47553011 47555172 2161 True 3993 3993 100.000 1 2162 1 chr4D.!!$R1 2161
1 TraesCS4D01G072900 chr4A 550488347 550489886 1539 True 1399 1399 83.805 225 1710 1 chr4A.!!$R1 1485
2 TraesCS4D01G072900 chr6A 60422099 60423211 1112 True 654 654 78.299 1045 2140 1 chr6A.!!$R1 1095
3 TraesCS4D01G072900 chr4B 69374177 69375158 981 False 544 544 77.657 1042 2009 1 chr4B.!!$F1 967

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.17914 GTGTGTGTTGGTGTTGGCTG 60.179 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1804 1956 0.035439 ATTTGACCCTTCGGCGATGT 60.035 50.0 11.76 8.82 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 7.946655 TTTCATCGTCTATACATAGCTTTGG 57.053 36.000 9.08 0.00 0.00 3.28
36 37 6.650427 TCATCGTCTATACATAGCTTTGGT 57.350 37.500 9.08 0.00 0.00 3.67
37 38 6.678878 TCATCGTCTATACATAGCTTTGGTC 58.321 40.000 9.08 0.00 0.00 4.02
38 39 6.490381 TCATCGTCTATACATAGCTTTGGTCT 59.510 38.462 9.08 0.00 0.00 3.85
39 40 6.710597 TCGTCTATACATAGCTTTGGTCTT 57.289 37.500 9.08 0.00 0.00 3.01
40 41 7.812690 TCGTCTATACATAGCTTTGGTCTTA 57.187 36.000 9.08 0.00 0.00 2.10
41 42 8.405418 TCGTCTATACATAGCTTTGGTCTTAT 57.595 34.615 9.08 0.59 0.00 1.73
42 43 8.857098 TCGTCTATACATAGCTTTGGTCTTATT 58.143 33.333 9.08 0.00 0.00 1.40
43 44 9.477484 CGTCTATACATAGCTTTGGTCTTATTT 57.523 33.333 9.08 0.00 0.00 1.40
48 49 9.686683 ATACATAGCTTTGGTCTTATTTGACTT 57.313 29.630 9.08 0.00 37.16 3.01
49 50 8.409358 ACATAGCTTTGGTCTTATTTGACTTT 57.591 30.769 9.08 0.00 37.16 2.66
50 51 8.299570 ACATAGCTTTGGTCTTATTTGACTTTG 58.700 33.333 9.08 0.00 37.16 2.77
51 52 5.532557 AGCTTTGGTCTTATTTGACTTTGC 58.467 37.500 0.00 0.00 37.16 3.68
52 53 5.302823 AGCTTTGGTCTTATTTGACTTTGCT 59.697 36.000 0.00 0.00 37.16 3.91
53 54 6.490040 AGCTTTGGTCTTATTTGACTTTGCTA 59.510 34.615 0.00 0.00 37.16 3.49
54 55 7.177392 AGCTTTGGTCTTATTTGACTTTGCTAT 59.823 33.333 0.00 0.00 37.16 2.97
55 56 7.814587 GCTTTGGTCTTATTTGACTTTGCTATT 59.185 33.333 0.00 0.00 37.16 1.73
56 57 9.346725 CTTTGGTCTTATTTGACTTTGCTATTC 57.653 33.333 0.00 0.00 37.16 1.75
57 58 7.072177 TGGTCTTATTTGACTTTGCTATTCG 57.928 36.000 0.00 0.00 37.16 3.34
58 59 5.965918 GGTCTTATTTGACTTTGCTATTCGC 59.034 40.000 0.00 0.00 37.16 4.70
59 60 6.183360 GGTCTTATTTGACTTTGCTATTCGCT 60.183 38.462 0.00 0.00 37.04 4.93
60 61 6.684555 GTCTTATTTGACTTTGCTATTCGCTG 59.315 38.462 0.00 0.00 35.40 5.18
61 62 6.593770 TCTTATTTGACTTTGCTATTCGCTGA 59.406 34.615 0.00 0.00 40.11 4.26
62 63 4.404507 TTTGACTTTGCTATTCGCTGAC 57.595 40.909 0.00 0.00 40.11 3.51
63 64 1.992667 TGACTTTGCTATTCGCTGACG 59.007 47.619 0.00 0.00 40.11 4.35
76 77 2.715268 CGCTGACGAATTTTTGTGTGT 58.285 42.857 0.00 0.00 43.93 3.72
77 78 2.463653 CGCTGACGAATTTTTGTGTGTG 59.536 45.455 0.00 0.00 43.93 3.82
78 79 3.434637 GCTGACGAATTTTTGTGTGTGT 58.565 40.909 0.00 0.00 0.00 3.72
79 80 3.240401 GCTGACGAATTTTTGTGTGTGTG 59.760 43.478 0.00 0.00 0.00 3.82
80 81 4.411327 CTGACGAATTTTTGTGTGTGTGT 58.589 39.130 0.00 0.00 0.00 3.72
81 82 4.162072 TGACGAATTTTTGTGTGTGTGTG 58.838 39.130 0.00 0.00 0.00 3.82
82 83 4.162812 GACGAATTTTTGTGTGTGTGTGT 58.837 39.130 0.00 0.00 0.00 3.72
83 84 3.917380 ACGAATTTTTGTGTGTGTGTGTG 59.083 39.130 0.00 0.00 0.00 3.82
84 85 3.917380 CGAATTTTTGTGTGTGTGTGTGT 59.083 39.130 0.00 0.00 0.00 3.72
85 86 4.384247 CGAATTTTTGTGTGTGTGTGTGTT 59.616 37.500 0.00 0.00 0.00 3.32
86 87 5.588568 AATTTTTGTGTGTGTGTGTGTTG 57.411 34.783 0.00 0.00 0.00 3.33
87 88 2.713895 TTTGTGTGTGTGTGTGTTGG 57.286 45.000 0.00 0.00 0.00 3.77
88 89 1.610363 TTGTGTGTGTGTGTGTTGGT 58.390 45.000 0.00 0.00 0.00 3.67
89 90 0.877743 TGTGTGTGTGTGTGTTGGTG 59.122 50.000 0.00 0.00 0.00 4.17
90 91 0.878416 GTGTGTGTGTGTGTTGGTGT 59.122 50.000 0.00 0.00 0.00 4.16
91 92 1.268352 GTGTGTGTGTGTGTTGGTGTT 59.732 47.619 0.00 0.00 0.00 3.32
92 93 1.268079 TGTGTGTGTGTGTTGGTGTTG 59.732 47.619 0.00 0.00 0.00 3.33
93 94 0.884514 TGTGTGTGTGTTGGTGTTGG 59.115 50.000 0.00 0.00 0.00 3.77
94 95 0.457681 GTGTGTGTGTTGGTGTTGGC 60.458 55.000 0.00 0.00 0.00 4.52
95 96 0.610509 TGTGTGTGTTGGTGTTGGCT 60.611 50.000 0.00 0.00 0.00 4.75
96 97 0.179140 GTGTGTGTTGGTGTTGGCTG 60.179 55.000 0.00 0.00 0.00 4.85
97 98 0.610509 TGTGTGTTGGTGTTGGCTGT 60.611 50.000 0.00 0.00 0.00 4.40
98 99 0.179140 GTGTGTTGGTGTTGGCTGTG 60.179 55.000 0.00 0.00 0.00 3.66
99 100 0.610509 TGTGTTGGTGTTGGCTGTGT 60.611 50.000 0.00 0.00 0.00 3.72
100 101 0.179140 GTGTTGGTGTTGGCTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
101 102 1.226945 GTTGGTGTTGGCTGTGTGC 60.227 57.895 0.00 0.00 41.94 4.57
102 103 1.680314 TTGGTGTTGGCTGTGTGCA 60.680 52.632 0.00 0.00 45.15 4.57
103 104 1.042003 TTGGTGTTGGCTGTGTGCAT 61.042 50.000 0.00 0.00 45.15 3.96
104 105 1.042003 TGGTGTTGGCTGTGTGCATT 61.042 50.000 0.00 0.00 45.15 3.56
105 106 0.318955 GGTGTTGGCTGTGTGCATTC 60.319 55.000 0.00 0.00 45.15 2.67
106 107 0.670162 GTGTTGGCTGTGTGCATTCT 59.330 50.000 0.00 0.00 45.15 2.40
107 108 1.879380 GTGTTGGCTGTGTGCATTCTA 59.121 47.619 0.00 0.00 45.15 2.10
108 109 2.095567 GTGTTGGCTGTGTGCATTCTAG 60.096 50.000 0.00 0.00 45.15 2.43
109 110 1.135575 GTTGGCTGTGTGCATTCTAGC 60.136 52.381 0.00 0.00 45.15 3.42
110 111 0.325933 TGGCTGTGTGCATTCTAGCT 59.674 50.000 12.70 0.00 45.15 3.32
111 112 1.554617 TGGCTGTGTGCATTCTAGCTA 59.445 47.619 12.70 0.00 45.15 3.32
112 113 2.171237 TGGCTGTGTGCATTCTAGCTAT 59.829 45.455 12.70 0.00 45.15 2.97
113 114 2.547211 GGCTGTGTGCATTCTAGCTATG 59.453 50.000 12.70 0.00 45.15 2.23
114 115 2.032204 GCTGTGTGCATTCTAGCTATGC 60.032 50.000 17.70 17.70 46.63 3.14
120 121 2.075338 GCATTCTAGCTATGCAGAGGC 58.925 52.381 18.94 5.36 45.93 4.70
121 122 2.697654 CATTCTAGCTATGCAGAGGCC 58.302 52.381 10.92 0.00 40.13 5.19
122 123 0.676184 TTCTAGCTATGCAGAGGCCG 59.324 55.000 10.92 0.48 40.13 6.13
123 124 1.181741 TCTAGCTATGCAGAGGCCGG 61.182 60.000 10.92 0.00 40.13 6.13
124 125 2.164865 CTAGCTATGCAGAGGCCGGG 62.165 65.000 10.92 0.00 40.13 5.73
125 126 2.946988 TAGCTATGCAGAGGCCGGGT 62.947 60.000 10.92 0.00 40.13 5.28
126 127 2.109799 CTATGCAGAGGCCGGGTG 59.890 66.667 2.18 0.00 40.13 4.61
127 128 2.687200 TATGCAGAGGCCGGGTGT 60.687 61.111 2.18 0.00 40.13 4.16
128 129 2.930385 CTATGCAGAGGCCGGGTGTG 62.930 65.000 2.18 0.00 40.13 3.82
135 136 4.643387 GGCCGGGTGTGTGCTCTT 62.643 66.667 2.18 0.00 0.00 2.85
136 137 2.594592 GCCGGGTGTGTGCTCTTT 60.595 61.111 2.18 0.00 0.00 2.52
137 138 2.908073 GCCGGGTGTGTGCTCTTTG 61.908 63.158 2.18 0.00 0.00 2.77
138 139 1.525995 CCGGGTGTGTGCTCTTTGT 60.526 57.895 0.00 0.00 0.00 2.83
139 140 1.648720 CGGGTGTGTGCTCTTTGTG 59.351 57.895 0.00 0.00 0.00 3.33
140 141 1.095228 CGGGTGTGTGCTCTTTGTGT 61.095 55.000 0.00 0.00 0.00 3.72
141 142 1.102978 GGGTGTGTGCTCTTTGTGTT 58.897 50.000 0.00 0.00 0.00 3.32
142 143 1.476488 GGGTGTGTGCTCTTTGTGTTT 59.524 47.619 0.00 0.00 0.00 2.83
143 144 2.529151 GGTGTGTGCTCTTTGTGTTTG 58.471 47.619 0.00 0.00 0.00 2.93
144 145 2.094752 GGTGTGTGCTCTTTGTGTTTGT 60.095 45.455 0.00 0.00 0.00 2.83
145 146 3.127895 GGTGTGTGCTCTTTGTGTTTGTA 59.872 43.478 0.00 0.00 0.00 2.41
146 147 4.202010 GGTGTGTGCTCTTTGTGTTTGTAT 60.202 41.667 0.00 0.00 0.00 2.29
147 148 4.970003 GTGTGTGCTCTTTGTGTTTGTATC 59.030 41.667 0.00 0.00 0.00 2.24
148 149 4.036262 TGTGTGCTCTTTGTGTTTGTATCC 59.964 41.667 0.00 0.00 0.00 2.59
149 150 4.275936 GTGTGCTCTTTGTGTTTGTATCCT 59.724 41.667 0.00 0.00 0.00 3.24
150 151 4.515191 TGTGCTCTTTGTGTTTGTATCCTC 59.485 41.667 0.00 0.00 0.00 3.71
151 152 4.757149 GTGCTCTTTGTGTTTGTATCCTCT 59.243 41.667 0.00 0.00 0.00 3.69
152 153 5.239525 GTGCTCTTTGTGTTTGTATCCTCTT 59.760 40.000 0.00 0.00 0.00 2.85
153 154 5.239306 TGCTCTTTGTGTTTGTATCCTCTTG 59.761 40.000 0.00 0.00 0.00 3.02
154 155 5.470098 GCTCTTTGTGTTTGTATCCTCTTGA 59.530 40.000 0.00 0.00 0.00 3.02
155 156 6.150140 GCTCTTTGTGTTTGTATCCTCTTGAT 59.850 38.462 0.00 0.00 37.49 2.57
156 157 7.334421 GCTCTTTGTGTTTGTATCCTCTTGATA 59.666 37.037 0.00 0.00 34.76 2.15
168 169 5.620738 TCCTCTTGATACTCCATTCCAAG 57.379 43.478 0.00 0.00 36.49 3.61
169 170 4.133078 CCTCTTGATACTCCATTCCAAGC 58.867 47.826 0.00 0.00 35.48 4.01
170 171 4.133078 CTCTTGATACTCCATTCCAAGCC 58.867 47.826 0.00 0.00 35.48 4.35
171 172 3.523157 TCTTGATACTCCATTCCAAGCCA 59.477 43.478 0.00 0.00 35.48 4.75
172 173 4.018506 TCTTGATACTCCATTCCAAGCCAA 60.019 41.667 0.00 0.00 35.48 4.52
173 174 4.524802 TGATACTCCATTCCAAGCCAAT 57.475 40.909 0.00 0.00 0.00 3.16
174 175 5.645056 TGATACTCCATTCCAAGCCAATA 57.355 39.130 0.00 0.00 0.00 1.90
175 176 6.012337 TGATACTCCATTCCAAGCCAATAA 57.988 37.500 0.00 0.00 0.00 1.40
176 177 6.430864 TGATACTCCATTCCAAGCCAATAAA 58.569 36.000 0.00 0.00 0.00 1.40
177 178 6.894654 TGATACTCCATTCCAAGCCAATAAAA 59.105 34.615 0.00 0.00 0.00 1.52
178 179 7.564660 TGATACTCCATTCCAAGCCAATAAAAT 59.435 33.333 0.00 0.00 0.00 1.82
179 180 6.225981 ACTCCATTCCAAGCCAATAAAATC 57.774 37.500 0.00 0.00 0.00 2.17
180 181 5.129320 ACTCCATTCCAAGCCAATAAAATCC 59.871 40.000 0.00 0.00 0.00 3.01
181 182 5.028802 TCCATTCCAAGCCAATAAAATCCA 58.971 37.500 0.00 0.00 0.00 3.41
182 183 5.104982 TCCATTCCAAGCCAATAAAATCCAC 60.105 40.000 0.00 0.00 0.00 4.02
183 184 4.817318 TTCCAAGCCAATAAAATCCACC 57.183 40.909 0.00 0.00 0.00 4.61
184 185 3.103742 TCCAAGCCAATAAAATCCACCC 58.896 45.455 0.00 0.00 0.00 4.61
185 186 3.106827 CCAAGCCAATAAAATCCACCCT 58.893 45.455 0.00 0.00 0.00 4.34
186 187 3.519107 CCAAGCCAATAAAATCCACCCTT 59.481 43.478 0.00 0.00 0.00 3.95
187 188 4.019411 CCAAGCCAATAAAATCCACCCTTT 60.019 41.667 0.00 0.00 0.00 3.11
188 189 5.188751 CCAAGCCAATAAAATCCACCCTTTA 59.811 40.000 0.00 0.00 0.00 1.85
189 190 6.126796 CCAAGCCAATAAAATCCACCCTTTAT 60.127 38.462 0.00 0.00 30.70 1.40
190 191 6.731292 AGCCAATAAAATCCACCCTTTATC 57.269 37.500 0.00 0.00 29.50 1.75
191 192 6.201591 AGCCAATAAAATCCACCCTTTATCA 58.798 36.000 0.00 0.00 29.50 2.15
192 193 6.671779 AGCCAATAAAATCCACCCTTTATCAA 59.328 34.615 0.00 0.00 29.50 2.57
193 194 7.181845 AGCCAATAAAATCCACCCTTTATCAAA 59.818 33.333 0.00 0.00 29.50 2.69
194 195 7.826744 GCCAATAAAATCCACCCTTTATCAAAA 59.173 33.333 0.00 0.00 29.50 2.44
195 196 9.732130 CCAATAAAATCCACCCTTTATCAAAAA 57.268 29.630 0.00 0.00 29.50 1.94
242 243 0.944386 TTGCTCGTGTCTTTGAAGGC 59.056 50.000 0.00 0.00 0.00 4.35
260 261 2.368655 GCAACCGCCATCTTCAAATT 57.631 45.000 0.00 0.00 0.00 1.82
266 267 2.954318 CCGCCATCTTCAAATTGATCCT 59.046 45.455 0.00 0.00 0.00 3.24
277 280 6.233905 TCAAATTGATCCTCGGACTTATGA 57.766 37.500 0.00 0.00 0.00 2.15
283 286 4.341235 TGATCCTCGGACTTATGAAATCGT 59.659 41.667 0.00 0.00 0.00 3.73
287 290 5.125900 TCCTCGGACTTATGAAATCGTTGTA 59.874 40.000 0.00 0.00 0.00 2.41
290 293 7.011109 CCTCGGACTTATGAAATCGTTGTATTT 59.989 37.037 0.00 0.00 0.00 1.40
293 296 9.632969 CGGACTTATGAAATCGTTGTATTTTAG 57.367 33.333 0.00 0.00 0.00 1.85
335 338 5.500234 TGAGGGTGATTTTAGAGAACATGG 58.500 41.667 0.00 0.00 0.00 3.66
343 346 8.734386 GTGATTTTAGAGAACATGGTTGATTCT 58.266 33.333 0.00 0.00 35.39 2.40
372 375 3.365472 GAACTGGGAAATGGGTTAGCAT 58.635 45.455 0.00 0.00 0.00 3.79
373 376 3.473113 ACTGGGAAATGGGTTAGCATT 57.527 42.857 0.00 0.00 0.00 3.56
385 389 3.947196 GGGTTAGCATTGTCATGTGATCA 59.053 43.478 0.00 0.00 32.28 2.92
389 393 6.484643 GGTTAGCATTGTCATGTGATCAGTAT 59.515 38.462 0.00 0.00 32.28 2.12
402 406 0.539986 TCAGTATCGCCCAAGGAACC 59.460 55.000 0.00 0.00 0.00 3.62
404 408 2.178235 GTATCGCCCAAGGAACCGC 61.178 63.158 0.00 0.00 0.00 5.68
416 420 1.521141 GAACCGCTCCTAACCCCTC 59.479 63.158 0.00 0.00 0.00 4.30
427 431 2.364647 CCTAACCCCTCGGTACATCTTC 59.635 54.545 0.00 0.00 43.71 2.87
441 445 7.179516 TCGGTACATCTTCTGGCCATATATTTA 59.820 37.037 5.51 0.00 0.00 1.40
468 472 7.334171 TGGAATTATGCCGAACATACATGATAG 59.666 37.037 0.00 0.00 41.02 2.08
478 482 4.433255 ACATACATGATAGATGGCCCTCT 58.567 43.478 15.41 15.41 0.00 3.69
479 483 5.593786 ACATACATGATAGATGGCCCTCTA 58.406 41.667 18.72 18.72 32.49 2.43
480 484 6.025539 ACATACATGATAGATGGCCCTCTAA 58.974 40.000 20.06 6.85 31.75 2.10
481 485 6.501805 ACATACATGATAGATGGCCCTCTAAA 59.498 38.462 20.06 12.64 31.75 1.85
485 489 7.988937 ACATGATAGATGGCCCTCTAAATTTA 58.011 34.615 20.06 3.43 31.75 1.40
488 492 8.924511 TGATAGATGGCCCTCTAAATTTAAAG 57.075 34.615 20.06 0.00 31.75 1.85
492 496 6.836007 AGATGGCCCTCTAAATTTAAAGGAAG 59.164 38.462 17.67 4.64 0.00 3.46
493 497 6.147437 TGGCCCTCTAAATTTAAAGGAAGA 57.853 37.500 17.67 2.91 0.00 2.87
494 498 6.741724 TGGCCCTCTAAATTTAAAGGAAGAT 58.258 36.000 17.67 0.00 0.00 2.40
495 499 6.607198 TGGCCCTCTAAATTTAAAGGAAGATG 59.393 38.462 17.67 3.34 0.00 2.90
504 508 4.919774 TTAAAGGAAGATGGTACCTGCA 57.080 40.909 14.36 0.00 34.03 4.41
510 514 5.440610 AGGAAGATGGTACCTGCAATTAAG 58.559 41.667 14.36 0.00 32.39 1.85
517 521 6.339587 TGGTACCTGCAATTAAGAAAAAGG 57.660 37.500 14.36 0.00 0.00 3.11
602 606 8.519799 AATCCAACACTAAAAAGAGAGTGAAA 57.480 30.769 8.91 0.00 44.88 2.69
605 609 9.793259 TCCAACACTAAAAAGAGAGTGAAATAT 57.207 29.630 8.91 0.00 44.88 1.28
632 636 4.183916 TCCAATAAGAGAAGAAAGGGGGT 58.816 43.478 0.00 0.00 0.00 4.95
634 638 4.018415 CCAATAAGAGAAGAAAGGGGGTCA 60.018 45.833 0.00 0.00 0.00 4.02
647 651 7.302948 AGAAAGGGGGTCAATACTTAGTTTTT 58.697 34.615 0.00 0.00 0.00 1.94
648 652 6.911250 AAGGGGGTCAATACTTAGTTTTTG 57.089 37.500 0.00 0.00 0.00 2.44
663 667 1.327303 TTTTGTGCCCAAGCGAATCT 58.673 45.000 0.00 0.00 44.31 2.40
667 671 0.659957 GTGCCCAAGCGAATCTCATC 59.340 55.000 0.00 0.00 44.31 2.92
678 682 7.309012 CCAAGCGAATCTCATCCAATCATTTAT 60.309 37.037 0.00 0.00 0.00 1.40
679 683 7.142306 AGCGAATCTCATCCAATCATTTATG 57.858 36.000 0.00 0.00 0.00 1.90
717 729 9.752961 TCGGTTTAATATCAATCTTGTAATCGA 57.247 29.630 0.00 0.00 0.00 3.59
739 751 2.746279 ACCATGGACCAACTTTCACA 57.254 45.000 21.47 0.00 0.00 3.58
746 758 2.481276 GGACCAACTTTCACAACTTGCC 60.481 50.000 0.00 0.00 0.00 4.52
749 761 2.929398 CCAACTTTCACAACTTGCCAAC 59.071 45.455 0.00 0.00 0.00 3.77
751 763 1.134175 ACTTTCACAACTTGCCAACGG 59.866 47.619 0.00 0.00 0.00 4.44
757 769 1.533731 ACAACTTGCCAACGGTTATCG 59.466 47.619 0.00 0.00 45.88 2.92
767 779 1.995991 CGGTTATCGTTGTCCTGCG 59.004 57.895 0.00 0.00 0.00 5.18
769 781 1.278238 GGTTATCGTTGTCCTGCGAG 58.722 55.000 0.00 0.00 40.56 5.03
777 789 2.480845 GTTGTCCTGCGAGTTACAACT 58.519 47.619 13.60 0.00 45.16 3.16
778 790 3.645884 GTTGTCCTGCGAGTTACAACTA 58.354 45.455 13.60 0.00 45.16 2.24
786 798 7.064253 GTCCTGCGAGTTACAACTATTATGTTT 59.936 37.037 0.00 0.00 39.88 2.83
787 799 7.604927 TCCTGCGAGTTACAACTATTATGTTTT 59.395 33.333 0.00 0.00 39.88 2.43
788 800 8.234546 CCTGCGAGTTACAACTATTATGTTTTT 58.765 33.333 0.00 0.00 39.88 1.94
839 851 9.797556 TGTGTAGACATATGTTCTATTACACAC 57.202 33.333 26.17 22.58 42.48 3.82
842 863 9.464714 GTAGACATATGTTCTATTACACACCAG 57.535 37.037 10.30 0.00 0.00 4.00
867 888 6.590292 GGTGTAGATCGGATATAACACAATGG 59.410 42.308 21.55 0.00 0.00 3.16
869 890 4.245660 AGATCGGATATAACACAATGGCG 58.754 43.478 0.00 0.00 0.00 5.69
874 895 3.253188 GGATATAACACAATGGCGCATGT 59.747 43.478 10.83 8.46 0.00 3.21
880 901 0.458889 ACAATGGCGCATGTTCATGC 60.459 50.000 22.88 22.88 43.72 4.06
886 907 3.758035 GCATGTTCATGCGCACAC 58.242 55.556 14.90 11.06 37.84 3.82
887 908 1.081309 GCATGTTCATGCGCACACA 60.081 52.632 14.90 17.07 37.84 3.72
888 909 0.457166 GCATGTTCATGCGCACACAT 60.457 50.000 14.90 18.69 37.84 3.21
889 910 1.985334 CATGTTCATGCGCACACATT 58.015 45.000 22.66 1.84 0.00 2.71
890 911 2.330286 CATGTTCATGCGCACACATTT 58.670 42.857 22.66 7.48 0.00 2.32
891 912 2.505628 TGTTCATGCGCACACATTTT 57.494 40.000 14.90 0.00 0.00 1.82
898 919 3.214697 TGCGCACACATTTTGATTAGG 57.785 42.857 5.66 0.00 0.00 2.69
923 944 6.296365 TCGTACTCTATGGTTACGATTCTG 57.704 41.667 10.17 0.00 38.10 3.02
942 968 6.721571 TTCTGTATGTCTTTTGAATCCGTC 57.278 37.500 0.00 0.00 0.00 4.79
947 973 5.880054 ATGTCTTTTGAATCCGTCGAAAT 57.120 34.783 0.00 0.00 38.66 2.17
958 984 8.053411 TGAATCCGTCGAAATACTATTTTACG 57.947 34.615 16.22 16.22 0.00 3.18
965 991 9.811655 CGTCGAAATACTATTTTACGGTATAGA 57.188 33.333 15.75 0.00 0.00 1.98
982 1008 5.128008 GGTATAGATGCTTATGACCTCCCTC 59.872 48.000 0.00 0.00 0.00 4.30
993 1019 2.293184 TGACCTCCCTCTCTATGCCTTT 60.293 50.000 0.00 0.00 0.00 3.11
1021 1047 6.539103 GGTAATGACTCCTCTGGAATTACAAC 59.461 42.308 15.60 3.23 35.92 3.32
1028 1054 4.010349 CCTCTGGAATTACAACCTTCACC 58.990 47.826 0.00 0.00 0.00 4.02
1033 1059 5.144100 TGGAATTACAACCTTCACCACAAT 58.856 37.500 0.00 0.00 0.00 2.71
1035 1061 5.010617 GGAATTACAACCTTCACCACAATGT 59.989 40.000 0.00 0.00 0.00 2.71
1040 1066 1.946768 ACCTTCACCACAATGTTGTCG 59.053 47.619 0.00 0.00 39.91 4.35
1055 1081 3.689161 TGTTGTCGTCCATGGATCAAATC 59.311 43.478 19.62 12.55 0.00 2.17
1060 1086 5.418524 TGTCGTCCATGGATCAAATCATTTT 59.581 36.000 19.62 0.00 0.00 1.82
1064 1090 5.292589 GTCCATGGATCAAATCATTTTGTGC 59.707 40.000 19.62 0.00 42.37 4.57
1081 1107 2.629137 TGTGCATTGGATTTCACTTGCT 59.371 40.909 0.00 0.00 36.35 3.91
1083 1109 3.676646 GTGCATTGGATTTCACTTGCTTC 59.323 43.478 0.00 0.00 36.35 3.86
1095 1121 1.968493 ACTTGCTTCTCTACGGTTCCA 59.032 47.619 0.00 0.00 0.00 3.53
1117 1143 0.177141 GCGTGTGCTTGGGATAGGTA 59.823 55.000 0.00 0.00 38.39 3.08
1218 1246 5.248640 CCGATTGAAGGGTAATGCTCATAT 58.751 41.667 0.00 0.00 0.00 1.78
1221 1249 4.712051 TGAAGGGTAATGCTCATATGCT 57.288 40.909 0.00 0.00 0.00 3.79
1251 1279 4.686554 GCACTGTATAGTAGGCTATTGCAC 59.313 45.833 0.00 0.00 37.52 4.57
1357 1385 5.245531 ACTTGCTAATTTGAATCCGACTGA 58.754 37.500 0.00 0.00 0.00 3.41
1381 1434 5.036117 AGTACAAAGTTCAAGCCTCTTGA 57.964 39.130 5.25 5.25 0.00 3.02
1388 1441 3.389329 AGTTCAAGCCTCTTGACTCTTCA 59.611 43.478 8.60 0.00 0.00 3.02
1406 1459 5.053811 TCTTCACACACTTTCTCGCAAATA 58.946 37.500 0.00 0.00 0.00 1.40
1528 1621 5.424121 AAGAGAATAATTCGCAATTCGGG 57.576 39.130 0.00 0.00 37.22 5.14
1529 1622 3.251004 AGAGAATAATTCGCAATTCGGGC 59.749 43.478 0.00 0.00 37.22 6.13
1534 1627 1.996786 ATTCGCAATTCGGGCTGCAG 61.997 55.000 10.11 10.11 38.52 4.41
1538 1631 0.526954 GCAATTCGGGCTGCAGATTG 60.527 55.000 20.43 18.11 38.48 2.67
1557 1650 0.379669 GCATGAAGTCCATCAAGGCG 59.620 55.000 0.00 0.00 37.29 5.52
1558 1651 1.742761 CATGAAGTCCATCAAGGCGT 58.257 50.000 0.00 0.00 37.29 5.68
1596 1689 7.017551 AGTGCCAATATCAAATAGATCCCTACA 59.982 37.037 0.00 0.00 38.19 2.74
1659 1774 0.903454 TCGTCAGAAACCCTCCTCCC 60.903 60.000 0.00 0.00 0.00 4.30
1683 1799 5.559148 ACAAGGGATAAGACATCCTGATC 57.441 43.478 3.44 0.00 38.26 2.92
1701 1817 5.356470 CCTGATCTGATTCCAAAACTCCTTC 59.644 44.000 0.38 0.00 0.00 3.46
1710 1826 5.223449 TCCAAAACTCCTTCGTGTATCTT 57.777 39.130 0.00 0.00 0.00 2.40
1711 1827 5.617252 TCCAAAACTCCTTCGTGTATCTTT 58.383 37.500 0.00 0.00 0.00 2.52
1712 1828 5.699458 TCCAAAACTCCTTCGTGTATCTTTC 59.301 40.000 0.00 0.00 0.00 2.62
1713 1829 5.701290 CCAAAACTCCTTCGTGTATCTTTCT 59.299 40.000 0.00 0.00 0.00 2.52
1714 1830 6.872020 CCAAAACTCCTTCGTGTATCTTTCTA 59.128 38.462 0.00 0.00 0.00 2.10
1715 1831 7.549488 CCAAAACTCCTTCGTGTATCTTTCTAT 59.451 37.037 0.00 0.00 0.00 1.98
1716 1832 8.936864 CAAAACTCCTTCGTGTATCTTTCTATT 58.063 33.333 0.00 0.00 0.00 1.73
1717 1833 9.503399 AAAACTCCTTCGTGTATCTTTCTATTT 57.497 29.630 0.00 0.00 0.00 1.40
1718 1834 8.705048 AACTCCTTCGTGTATCTTTCTATTTC 57.295 34.615 0.00 0.00 0.00 2.17
1719 1835 6.973474 ACTCCTTCGTGTATCTTTCTATTTCG 59.027 38.462 0.00 0.00 0.00 3.46
1720 1836 7.092137 TCCTTCGTGTATCTTTCTATTTCGA 57.908 36.000 0.00 0.00 0.00 3.71
1721 1837 7.713750 TCCTTCGTGTATCTTTCTATTTCGAT 58.286 34.615 0.00 0.00 0.00 3.59
1722 1838 8.195436 TCCTTCGTGTATCTTTCTATTTCGATT 58.805 33.333 0.00 0.00 0.00 3.34
1723 1839 8.480853 CCTTCGTGTATCTTTCTATTTCGATTC 58.519 37.037 0.00 0.00 0.00 2.52
1724 1840 7.925703 TCGTGTATCTTTCTATTTCGATTCC 57.074 36.000 0.00 0.00 0.00 3.01
1725 1841 7.485810 TCGTGTATCTTTCTATTTCGATTCCA 58.514 34.615 0.00 0.00 0.00 3.53
1726 1842 7.977293 TCGTGTATCTTTCTATTTCGATTCCAA 59.023 33.333 0.00 0.00 0.00 3.53
1727 1843 8.600625 CGTGTATCTTTCTATTTCGATTCCAAA 58.399 33.333 0.00 0.00 0.00 3.28
1732 1848 7.590279 TCTTTCTATTTCGATTCCAAAACACC 58.410 34.615 0.00 0.00 0.00 4.16
1733 1849 7.447238 TCTTTCTATTTCGATTCCAAAACACCT 59.553 33.333 0.00 0.00 0.00 4.00
1734 1850 7.519032 TTCTATTTCGATTCCAAAACACCTT 57.481 32.000 0.00 0.00 0.00 3.50
1735 1851 8.624367 TTCTATTTCGATTCCAAAACACCTTA 57.376 30.769 0.00 0.00 0.00 2.69
1736 1852 8.263940 TCTATTTCGATTCCAAAACACCTTAG 57.736 34.615 0.00 0.00 0.00 2.18
1737 1853 6.894339 ATTTCGATTCCAAAACACCTTAGT 57.106 33.333 0.00 0.00 0.00 2.24
1755 1871 5.927115 CCTTAGTGTATTTCTCTATTCCGGC 59.073 44.000 0.00 0.00 0.00 6.13
1774 1890 0.459585 CATCCCCGTGACTAACACCG 60.460 60.000 0.00 0.00 45.73 4.94
1775 1891 2.234913 ATCCCCGTGACTAACACCGC 62.235 60.000 0.00 0.00 45.73 5.68
1795 1947 1.051812 AATATCGAGTGGGCCAGAGG 58.948 55.000 6.40 0.00 0.00 3.69
1848 2000 7.795047 TCTCATTGTTGACATATCATGTACCT 58.205 34.615 0.00 0.00 45.03 3.08
1895 2047 5.238006 GCGAGGTAGCTATCTAATTCGAT 57.762 43.478 15.32 0.00 36.13 3.59
1897 2049 5.731126 GCGAGGTAGCTATCTAATTCGATCC 60.731 48.000 15.32 0.00 36.13 3.36
1927 2079 0.107654 CTAAAAGGCCCTCCACTCGG 60.108 60.000 0.00 0.00 33.74 4.63
1928 2080 0.545787 TAAAAGGCCCTCCACTCGGA 60.546 55.000 0.00 0.00 39.79 4.55
1946 2098 5.357314 ACTCGGATCGATCAAGTTTCTTCTA 59.643 40.000 25.93 1.65 34.61 2.10
1949 2101 5.107683 CGGATCGATCAAGTTTCTTCTATGC 60.108 44.000 25.93 2.78 0.00 3.14
1955 2107 6.980978 CGATCAAGTTTCTTCTATGCCTCTAA 59.019 38.462 0.00 0.00 0.00 2.10
2009 2161 4.085721 CGTTTCGGACATAATCTTAGCGAC 60.086 45.833 0.00 0.00 0.00 5.19
2060 2212 4.791334 TCCAATTTACACCTAATCCCTCCA 59.209 41.667 0.00 0.00 0.00 3.86
2072 2224 9.759473 CACCTAATCCCTCCAATTCATATTATT 57.241 33.333 0.00 0.00 0.00 1.40
2085 2237 8.463709 CAATTCATATTATTTGTCGCTCAAACG 58.536 33.333 7.52 0.00 46.77 3.60
2089 2241 2.900122 ATTTGTCGCTCAAACGGATG 57.100 45.000 7.52 0.00 46.77 3.51
2097 2249 4.206609 GTCGCTCAAACGGATGTATTAGAC 59.793 45.833 0.00 0.00 0.00 2.59
2113 2265 9.909644 ATGTATTAGACGTATTTTAGTGCTAGG 57.090 33.333 0.00 0.00 0.00 3.02
2129 2281 1.600957 CTAGGCACATCCATTTGAGCG 59.399 52.381 0.00 0.00 34.50 5.03
2130 2282 1.033746 AGGCACATCCATTTGAGCGG 61.034 55.000 0.00 0.00 34.50 5.52
2140 2292 6.886459 ACATCCATTTGAGCGGCTAATAATAT 59.114 34.615 0.60 0.00 0.00 1.28
2141 2293 6.741992 TCCATTTGAGCGGCTAATAATATG 57.258 37.500 0.60 1.64 0.00 1.78
2142 2294 6.237901 TCCATTTGAGCGGCTAATAATATGT 58.762 36.000 0.60 0.00 0.00 2.29
2143 2295 6.149308 TCCATTTGAGCGGCTAATAATATGTG 59.851 38.462 0.60 0.00 0.00 3.21
2144 2296 5.940192 TTTGAGCGGCTAATAATATGTGG 57.060 39.130 0.60 0.00 0.00 4.17
2145 2297 4.882842 TGAGCGGCTAATAATATGTGGA 57.117 40.909 0.60 0.00 0.00 4.02
2146 2298 5.420725 TGAGCGGCTAATAATATGTGGAT 57.579 39.130 0.60 0.00 0.00 3.41
2147 2299 5.419542 TGAGCGGCTAATAATATGTGGATC 58.580 41.667 0.60 0.00 0.00 3.36
2148 2300 4.433615 AGCGGCTAATAATATGTGGATCG 58.566 43.478 0.00 0.00 0.00 3.69
2149 2301 3.555956 GCGGCTAATAATATGTGGATCGG 59.444 47.826 0.00 0.00 0.00 4.18
2150 2302 4.679639 GCGGCTAATAATATGTGGATCGGA 60.680 45.833 0.00 0.00 0.00 4.55
2151 2303 5.043903 CGGCTAATAATATGTGGATCGGAG 58.956 45.833 0.00 0.00 0.00 4.63
2152 2304 5.360591 GGCTAATAATATGTGGATCGGAGG 58.639 45.833 0.00 0.00 0.00 4.30
2153 2305 5.360591 GCTAATAATATGTGGATCGGAGGG 58.639 45.833 0.00 0.00 0.00 4.30
2154 2306 5.128827 GCTAATAATATGTGGATCGGAGGGA 59.871 44.000 0.00 0.00 0.00 4.20
2155 2307 5.683876 AATAATATGTGGATCGGAGGGAG 57.316 43.478 0.00 0.00 0.00 4.30
2156 2308 2.704190 ATATGTGGATCGGAGGGAGT 57.296 50.000 0.00 0.00 0.00 3.85
2157 2309 3.827817 ATATGTGGATCGGAGGGAGTA 57.172 47.619 0.00 0.00 0.00 2.59
2158 2310 1.705873 ATGTGGATCGGAGGGAGTAC 58.294 55.000 0.00 0.00 0.00 2.73
2159 2311 0.333652 TGTGGATCGGAGGGAGTACA 59.666 55.000 0.00 0.00 0.00 2.90
2160 2312 1.063190 TGTGGATCGGAGGGAGTACAT 60.063 52.381 0.00 0.00 0.00 2.29
2161 2313 2.040178 GTGGATCGGAGGGAGTACATT 58.960 52.381 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 8.826710 CCAAAGCTATGTATAGACGATGAAAAA 58.173 33.333 3.15 0.00 32.05 1.94
10 11 7.985184 ACCAAAGCTATGTATAGACGATGAAAA 59.015 33.333 3.15 0.00 32.05 2.29
11 12 7.497595 ACCAAAGCTATGTATAGACGATGAAA 58.502 34.615 3.15 0.00 32.05 2.69
12 13 7.014326 AGACCAAAGCTATGTATAGACGATGAA 59.986 37.037 3.15 0.00 32.05 2.57
13 14 6.490381 AGACCAAAGCTATGTATAGACGATGA 59.510 38.462 3.15 0.00 32.05 2.92
14 15 6.682746 AGACCAAAGCTATGTATAGACGATG 58.317 40.000 3.15 0.00 32.05 3.84
15 16 6.902771 AGACCAAAGCTATGTATAGACGAT 57.097 37.500 3.15 0.00 32.05 3.73
16 17 6.710597 AAGACCAAAGCTATGTATAGACGA 57.289 37.500 3.15 0.00 32.05 4.20
17 18 9.477484 AAATAAGACCAAAGCTATGTATAGACG 57.523 33.333 3.15 0.00 32.05 4.18
22 23 9.686683 AAGTCAAATAAGACCAAAGCTATGTAT 57.313 29.630 0.00 0.00 39.34 2.29
23 24 9.515226 AAAGTCAAATAAGACCAAAGCTATGTA 57.485 29.630 0.00 0.00 39.34 2.29
24 25 8.299570 CAAAGTCAAATAAGACCAAAGCTATGT 58.700 33.333 0.00 0.00 39.34 2.29
25 26 7.274250 GCAAAGTCAAATAAGACCAAAGCTATG 59.726 37.037 0.00 0.00 39.34 2.23
26 27 7.177392 AGCAAAGTCAAATAAGACCAAAGCTAT 59.823 33.333 0.00 0.00 39.34 2.97
27 28 6.490040 AGCAAAGTCAAATAAGACCAAAGCTA 59.510 34.615 0.00 0.00 39.34 3.32
28 29 5.302823 AGCAAAGTCAAATAAGACCAAAGCT 59.697 36.000 0.00 0.00 39.34 3.74
29 30 5.532557 AGCAAAGTCAAATAAGACCAAAGC 58.467 37.500 0.00 0.00 39.34 3.51
30 31 9.346725 GAATAGCAAAGTCAAATAAGACCAAAG 57.653 33.333 0.00 0.00 39.34 2.77
31 32 8.020819 CGAATAGCAAAGTCAAATAAGACCAAA 58.979 33.333 0.00 0.00 39.34 3.28
32 33 7.526608 CGAATAGCAAAGTCAAATAAGACCAA 58.473 34.615 0.00 0.00 39.34 3.67
33 34 7.072177 CGAATAGCAAAGTCAAATAAGACCA 57.928 36.000 0.00 0.00 39.34 4.02
55 56 2.353269 ACACACAAAAATTCGTCAGCGA 59.647 40.909 0.00 0.00 46.36 4.93
56 57 2.463653 CACACACAAAAATTCGTCAGCG 59.536 45.455 0.00 0.00 39.92 5.18
57 58 3.240401 CACACACACAAAAATTCGTCAGC 59.760 43.478 0.00 0.00 0.00 4.26
58 59 4.262743 CACACACACACAAAAATTCGTCAG 59.737 41.667 0.00 0.00 0.00 3.51
59 60 4.162072 CACACACACACAAAAATTCGTCA 58.838 39.130 0.00 0.00 0.00 4.35
60 61 4.030083 CACACACACACACAAAAATTCGTC 59.970 41.667 0.00 0.00 0.00 4.20
61 62 3.917380 CACACACACACACAAAAATTCGT 59.083 39.130 0.00 0.00 0.00 3.85
62 63 3.917380 ACACACACACACACAAAAATTCG 59.083 39.130 0.00 0.00 0.00 3.34
63 64 5.389307 CCAACACACACACACACAAAAATTC 60.389 40.000 0.00 0.00 0.00 2.17
64 65 4.450419 CCAACACACACACACACAAAAATT 59.550 37.500 0.00 0.00 0.00 1.82
65 66 3.993081 CCAACACACACACACACAAAAAT 59.007 39.130 0.00 0.00 0.00 1.82
66 67 3.181475 ACCAACACACACACACACAAAAA 60.181 39.130 0.00 0.00 0.00 1.94
67 68 2.362397 ACCAACACACACACACACAAAA 59.638 40.909 0.00 0.00 0.00 2.44
68 69 1.957177 ACCAACACACACACACACAAA 59.043 42.857 0.00 0.00 0.00 2.83
69 70 1.268079 CACCAACACACACACACACAA 59.732 47.619 0.00 0.00 0.00 3.33
70 71 0.877743 CACCAACACACACACACACA 59.122 50.000 0.00 0.00 0.00 3.72
71 72 0.878416 ACACCAACACACACACACAC 59.122 50.000 0.00 0.00 0.00 3.82
72 73 1.268079 CAACACCAACACACACACACA 59.732 47.619 0.00 0.00 0.00 3.72
73 74 1.402194 CCAACACCAACACACACACAC 60.402 52.381 0.00 0.00 0.00 3.82
74 75 0.884514 CCAACACCAACACACACACA 59.115 50.000 0.00 0.00 0.00 3.72
75 76 0.457681 GCCAACACCAACACACACAC 60.458 55.000 0.00 0.00 0.00 3.82
76 77 0.610509 AGCCAACACCAACACACACA 60.611 50.000 0.00 0.00 0.00 3.72
77 78 0.179140 CAGCCAACACCAACACACAC 60.179 55.000 0.00 0.00 0.00 3.82
78 79 0.610509 ACAGCCAACACCAACACACA 60.611 50.000 0.00 0.00 0.00 3.72
79 80 0.179140 CACAGCCAACACCAACACAC 60.179 55.000 0.00 0.00 0.00 3.82
80 81 0.610509 ACACAGCCAACACCAACACA 60.611 50.000 0.00 0.00 0.00 3.72
81 82 0.179140 CACACAGCCAACACCAACAC 60.179 55.000 0.00 0.00 0.00 3.32
82 83 1.943116 GCACACAGCCAACACCAACA 61.943 55.000 0.00 0.00 37.23 3.33
83 84 1.226945 GCACACAGCCAACACCAAC 60.227 57.895 0.00 0.00 37.23 3.77
84 85 1.042003 ATGCACACAGCCAACACCAA 61.042 50.000 0.00 0.00 44.83 3.67
85 86 1.042003 AATGCACACAGCCAACACCA 61.042 50.000 0.00 0.00 44.83 4.17
86 87 0.318955 GAATGCACACAGCCAACACC 60.319 55.000 0.00 0.00 44.83 4.16
87 88 0.670162 AGAATGCACACAGCCAACAC 59.330 50.000 0.00 0.00 44.83 3.32
88 89 2.153645 CTAGAATGCACACAGCCAACA 58.846 47.619 0.00 0.00 44.83 3.33
89 90 1.135575 GCTAGAATGCACACAGCCAAC 60.136 52.381 0.00 0.00 44.83 3.77
90 91 1.167851 GCTAGAATGCACACAGCCAA 58.832 50.000 0.00 0.00 44.83 4.52
91 92 0.325933 AGCTAGAATGCACACAGCCA 59.674 50.000 0.00 0.00 44.83 4.75
92 93 2.315925 TAGCTAGAATGCACACAGCC 57.684 50.000 0.00 0.00 44.83 4.85
93 94 3.874400 CATAGCTAGAATGCACACAGC 57.126 47.619 0.00 0.00 45.96 4.40
101 102 2.697654 GGCCTCTGCATAGCTAGAATG 58.302 52.381 0.00 0.00 40.13 2.67
102 103 1.274728 CGGCCTCTGCATAGCTAGAAT 59.725 52.381 0.00 0.00 40.13 2.40
103 104 0.676184 CGGCCTCTGCATAGCTAGAA 59.324 55.000 0.00 0.00 40.13 2.10
104 105 1.181741 CCGGCCTCTGCATAGCTAGA 61.182 60.000 0.00 0.00 40.13 2.43
105 106 1.291588 CCGGCCTCTGCATAGCTAG 59.708 63.158 0.00 0.00 40.13 3.42
106 107 2.210013 CCCGGCCTCTGCATAGCTA 61.210 63.158 0.00 0.00 40.13 3.32
107 108 3.554342 CCCGGCCTCTGCATAGCT 61.554 66.667 0.00 0.00 40.13 3.32
108 109 3.866582 ACCCGGCCTCTGCATAGC 61.867 66.667 0.00 0.00 40.13 2.97
109 110 2.109799 CACCCGGCCTCTGCATAG 59.890 66.667 0.00 0.00 40.13 2.23
110 111 2.687200 ACACCCGGCCTCTGCATA 60.687 61.111 0.00 0.00 40.13 3.14
111 112 4.415150 CACACCCGGCCTCTGCAT 62.415 66.667 0.00 0.00 40.13 3.96
118 119 4.643387 AAGAGCACACACCCGGCC 62.643 66.667 0.00 0.00 0.00 6.13
119 120 2.594592 AAAGAGCACACACCCGGC 60.595 61.111 0.00 0.00 0.00 6.13
120 121 1.525995 ACAAAGAGCACACACCCGG 60.526 57.895 0.00 0.00 0.00 5.73
121 122 1.095228 ACACAAAGAGCACACACCCG 61.095 55.000 0.00 0.00 0.00 5.28
122 123 1.102978 AACACAAAGAGCACACACCC 58.897 50.000 0.00 0.00 0.00 4.61
123 124 2.094752 ACAAACACAAAGAGCACACACC 60.095 45.455 0.00 0.00 0.00 4.16
124 125 3.216147 ACAAACACAAAGAGCACACAC 57.784 42.857 0.00 0.00 0.00 3.82
125 126 4.036262 GGATACAAACACAAAGAGCACACA 59.964 41.667 0.00 0.00 0.00 3.72
126 127 4.275936 AGGATACAAACACAAAGAGCACAC 59.724 41.667 0.00 0.00 41.41 3.82
127 128 4.460263 AGGATACAAACACAAAGAGCACA 58.540 39.130 0.00 0.00 41.41 4.57
128 129 4.757149 AGAGGATACAAACACAAAGAGCAC 59.243 41.667 0.00 0.00 41.41 4.40
129 130 4.973168 AGAGGATACAAACACAAAGAGCA 58.027 39.130 0.00 0.00 41.41 4.26
130 131 5.470098 TCAAGAGGATACAAACACAAAGAGC 59.530 40.000 0.00 0.00 41.41 4.09
131 132 7.678947 ATCAAGAGGATACAAACACAAAGAG 57.321 36.000 0.00 0.00 41.41 2.85
144 145 6.239714 GCTTGGAATGGAGTATCAAGAGGATA 60.240 42.308 0.00 0.00 37.57 2.59
145 146 5.455899 GCTTGGAATGGAGTATCAAGAGGAT 60.456 44.000 0.00 0.00 37.57 3.24
146 147 4.141620 GCTTGGAATGGAGTATCAAGAGGA 60.142 45.833 0.00 0.00 37.57 3.71
147 148 4.133078 GCTTGGAATGGAGTATCAAGAGG 58.867 47.826 0.00 0.00 37.57 3.69
148 149 4.133078 GGCTTGGAATGGAGTATCAAGAG 58.867 47.826 0.00 0.00 37.57 2.85
149 150 3.523157 TGGCTTGGAATGGAGTATCAAGA 59.477 43.478 0.00 0.00 37.57 3.02
150 151 3.889815 TGGCTTGGAATGGAGTATCAAG 58.110 45.455 0.00 0.00 36.25 3.02
151 152 4.314522 TTGGCTTGGAATGGAGTATCAA 57.685 40.909 0.00 0.00 36.25 2.57
152 153 4.524802 ATTGGCTTGGAATGGAGTATCA 57.475 40.909 0.00 0.00 36.25 2.15
153 154 6.959639 TTTATTGGCTTGGAATGGAGTATC 57.040 37.500 0.00 0.00 0.00 2.24
154 155 7.015584 GGATTTTATTGGCTTGGAATGGAGTAT 59.984 37.037 0.00 0.00 0.00 2.12
155 156 6.323739 GGATTTTATTGGCTTGGAATGGAGTA 59.676 38.462 0.00 0.00 0.00 2.59
156 157 5.129320 GGATTTTATTGGCTTGGAATGGAGT 59.871 40.000 0.00 0.00 0.00 3.85
157 158 5.129155 TGGATTTTATTGGCTTGGAATGGAG 59.871 40.000 0.00 0.00 0.00 3.86
158 159 5.028802 TGGATTTTATTGGCTTGGAATGGA 58.971 37.500 0.00 0.00 0.00 3.41
159 160 5.118286 GTGGATTTTATTGGCTTGGAATGG 58.882 41.667 0.00 0.00 0.00 3.16
160 161 5.118286 GGTGGATTTTATTGGCTTGGAATG 58.882 41.667 0.00 0.00 0.00 2.67
161 162 4.164030 GGGTGGATTTTATTGGCTTGGAAT 59.836 41.667 0.00 0.00 0.00 3.01
162 163 3.517500 GGGTGGATTTTATTGGCTTGGAA 59.482 43.478 0.00 0.00 0.00 3.53
163 164 3.103742 GGGTGGATTTTATTGGCTTGGA 58.896 45.455 0.00 0.00 0.00 3.53
164 165 3.106827 AGGGTGGATTTTATTGGCTTGG 58.893 45.455 0.00 0.00 0.00 3.61
165 166 4.824479 AAGGGTGGATTTTATTGGCTTG 57.176 40.909 0.00 0.00 0.00 4.01
166 167 6.671779 TGATAAAGGGTGGATTTTATTGGCTT 59.328 34.615 0.00 0.00 31.50 4.35
167 168 6.201591 TGATAAAGGGTGGATTTTATTGGCT 58.798 36.000 0.00 0.00 31.50 4.75
168 169 6.478512 TGATAAAGGGTGGATTTTATTGGC 57.521 37.500 0.00 0.00 31.50 4.52
169 170 9.732130 TTTTTGATAAAGGGTGGATTTTATTGG 57.268 29.630 0.00 0.00 31.50 3.16
209 210 9.456147 AAGACACGAGCAATAGATATATAGAGT 57.544 33.333 0.00 0.00 0.00 3.24
214 215 9.416794 CTTCAAAGACACGAGCAATAGATATAT 57.583 33.333 0.00 0.00 0.00 0.86
215 216 7.867909 CCTTCAAAGACACGAGCAATAGATATA 59.132 37.037 0.00 0.00 0.00 0.86
216 217 6.703607 CCTTCAAAGACACGAGCAATAGATAT 59.296 38.462 0.00 0.00 0.00 1.63
217 218 6.042777 CCTTCAAAGACACGAGCAATAGATA 58.957 40.000 0.00 0.00 0.00 1.98
218 219 4.872691 CCTTCAAAGACACGAGCAATAGAT 59.127 41.667 0.00 0.00 0.00 1.98
219 220 4.245660 CCTTCAAAGACACGAGCAATAGA 58.754 43.478 0.00 0.00 0.00 1.98
220 221 3.181516 GCCTTCAAAGACACGAGCAATAG 60.182 47.826 0.00 0.00 0.00 1.73
221 222 2.742053 GCCTTCAAAGACACGAGCAATA 59.258 45.455 0.00 0.00 0.00 1.90
222 223 1.537202 GCCTTCAAAGACACGAGCAAT 59.463 47.619 0.00 0.00 0.00 3.56
223 224 0.944386 GCCTTCAAAGACACGAGCAA 59.056 50.000 0.00 0.00 0.00 3.91
228 229 0.041312 CGGTTGCCTTCAAAGACACG 60.041 55.000 0.00 0.00 33.37 4.49
242 243 3.574284 TCAATTTGAAGATGGCGGTTG 57.426 42.857 0.00 0.00 0.00 3.77
260 261 4.341235 ACGATTTCATAAGTCCGAGGATCA 59.659 41.667 0.00 0.00 33.17 2.92
266 267 7.837202 AAATACAACGATTTCATAAGTCCGA 57.163 32.000 0.00 0.00 0.00 4.55
318 321 8.868522 AGAATCAACCATGTTCTCTAAAATCA 57.131 30.769 0.00 0.00 0.00 2.57
331 334 2.093500 TCCCACGAGAGAATCAACCATG 60.093 50.000 0.00 0.00 37.82 3.66
335 338 2.996621 CAGTTCCCACGAGAGAATCAAC 59.003 50.000 0.00 0.00 37.82 3.18
343 346 1.003118 CATTTCCCAGTTCCCACGAGA 59.997 52.381 0.00 0.00 0.00 4.04
346 349 0.965363 CCCATTTCCCAGTTCCCACG 60.965 60.000 0.00 0.00 0.00 4.94
372 375 3.457234 GGCGATACTGATCACATGACAA 58.543 45.455 0.00 0.00 31.78 3.18
373 376 2.224042 GGGCGATACTGATCACATGACA 60.224 50.000 0.00 0.00 31.78 3.58
385 389 1.520666 CGGTTCCTTGGGCGATACT 59.479 57.895 0.00 0.00 0.00 2.12
389 393 4.388499 GAGCGGTTCCTTGGGCGA 62.388 66.667 0.00 0.00 0.00 5.54
416 420 3.685139 ATATGGCCAGAAGATGTACCG 57.315 47.619 13.05 0.00 0.00 4.02
441 445 6.003326 TCATGTATGTTCGGCATAATTCCAT 58.997 36.000 0.00 1.19 41.29 3.41
454 458 5.046014 AGAGGGCCATCTATCATGTATGTTC 60.046 44.000 20.53 0.00 0.00 3.18
460 464 6.460103 AATTTAGAGGGCCATCTATCATGT 57.540 37.500 26.71 9.00 31.96 3.21
468 472 6.833933 TCTTCCTTTAAATTTAGAGGGCCATC 59.166 38.462 26.45 10.05 36.10 3.51
478 482 7.891183 TGCAGGTACCATCTTCCTTTAAATTTA 59.109 33.333 15.94 0.00 0.00 1.40
479 483 6.723977 TGCAGGTACCATCTTCCTTTAAATTT 59.276 34.615 15.94 0.00 0.00 1.82
480 484 6.252995 TGCAGGTACCATCTTCCTTTAAATT 58.747 36.000 15.94 0.00 0.00 1.82
481 485 5.826643 TGCAGGTACCATCTTCCTTTAAAT 58.173 37.500 15.94 0.00 0.00 1.40
485 489 3.806949 TTGCAGGTACCATCTTCCTTT 57.193 42.857 15.94 0.00 0.00 3.11
488 492 5.437060 TCTTAATTGCAGGTACCATCTTCC 58.563 41.667 15.94 0.00 0.00 3.46
492 496 7.035612 CCTTTTTCTTAATTGCAGGTACCATC 58.964 38.462 15.94 5.53 0.00 3.51
493 497 6.723977 TCCTTTTTCTTAATTGCAGGTACCAT 59.276 34.615 15.94 0.00 0.00 3.55
494 498 6.071984 TCCTTTTTCTTAATTGCAGGTACCA 58.928 36.000 15.94 0.00 0.00 3.25
495 499 6.584185 TCCTTTTTCTTAATTGCAGGTACC 57.416 37.500 2.73 2.73 0.00 3.34
570 574 8.923270 TCTCTTTTTAGTGTTGGATTTTTGGAT 58.077 29.630 0.00 0.00 0.00 3.41
571 575 8.299990 TCTCTTTTTAGTGTTGGATTTTTGGA 57.700 30.769 0.00 0.00 0.00 3.53
572 576 8.197439 ACTCTCTTTTTAGTGTTGGATTTTTGG 58.803 33.333 0.00 0.00 0.00 3.28
605 609 6.891908 CCCCTTTCTTCTCTTATTGGATTGAA 59.108 38.462 0.00 0.00 0.00 2.69
607 611 5.595952 CCCCCTTTCTTCTCTTATTGGATTG 59.404 44.000 0.00 0.00 0.00 2.67
611 615 4.018415 TGACCCCCTTTCTTCTCTTATTGG 60.018 45.833 0.00 0.00 0.00 3.16
632 636 6.716934 TTGGGCACAAAAACTAAGTATTGA 57.283 33.333 0.00 0.00 32.66 2.57
634 638 5.538118 GCTTGGGCACAAAAACTAAGTATT 58.462 37.500 1.48 0.00 35.89 1.89
647 651 0.035152 ATGAGATTCGCTTGGGCACA 60.035 50.000 0.00 0.00 38.60 4.57
648 652 0.659957 GATGAGATTCGCTTGGGCAC 59.340 55.000 0.00 0.00 38.60 5.01
663 667 6.980416 TTCCATGCATAAATGATTGGATGA 57.020 33.333 0.00 0.00 42.32 2.92
667 671 7.062956 CGATTCATTCCATGCATAAATGATTGG 59.937 37.037 25.55 20.87 38.72 3.16
678 682 5.850557 ATTAAACCGATTCATTCCATGCA 57.149 34.783 0.00 0.00 0.00 3.96
679 683 7.592938 TGATATTAAACCGATTCATTCCATGC 58.407 34.615 0.00 0.00 0.00 4.06
717 729 3.222603 GTGAAAGTTGGTCCATGGTTCT 58.777 45.455 12.58 1.66 0.00 3.01
720 732 2.693074 GTTGTGAAAGTTGGTCCATGGT 59.307 45.455 12.58 0.00 0.00 3.55
749 761 0.457166 TCGCAGGACAACGATAACCG 60.457 55.000 0.00 0.00 45.44 4.44
751 763 1.992170 ACTCGCAGGACAACGATAAC 58.008 50.000 0.00 0.00 37.72 1.89
757 769 2.943843 GTTGTAACTCGCAGGACAAC 57.056 50.000 14.40 14.40 43.32 3.32
763 775 9.051027 CAAAAACATAATAGTTGTAACTCGCAG 57.949 33.333 0.00 0.00 40.37 5.18
778 790 8.956533 AGTAGCAAAAACACCAAAAACATAAT 57.043 26.923 0.00 0.00 0.00 1.28
835 847 1.182667 TCCGATCTACACCTGGTGTG 58.817 55.000 36.25 26.12 46.84 3.82
839 851 5.243060 TGTGTTATATCCGATCTACACCTGG 59.757 44.000 13.65 0.00 36.07 4.45
842 863 6.590292 CCATTGTGTTATATCCGATCTACACC 59.410 42.308 13.65 2.98 36.07 4.16
851 872 1.870402 TGCGCCATTGTGTTATATCCG 59.130 47.619 4.18 0.00 0.00 4.18
874 895 2.789491 TCAAAATGTGTGCGCATGAA 57.211 40.000 15.91 1.58 0.00 2.57
880 901 4.201812 ACGATCCTAATCAAAATGTGTGCG 60.202 41.667 0.00 0.00 31.76 5.34
885 906 9.698309 CATAGAGTACGATCCTAATCAAAATGT 57.302 33.333 0.00 0.00 31.76 2.71
886 907 9.144747 CCATAGAGTACGATCCTAATCAAAATG 57.855 37.037 0.00 3.54 31.76 2.32
887 908 8.871125 ACCATAGAGTACGATCCTAATCAAAAT 58.129 33.333 0.00 0.00 31.76 1.82
888 909 8.246430 ACCATAGAGTACGATCCTAATCAAAA 57.754 34.615 0.00 0.00 31.76 2.44
889 910 7.834881 ACCATAGAGTACGATCCTAATCAAA 57.165 36.000 0.00 0.00 31.76 2.69
890 911 7.834881 AACCATAGAGTACGATCCTAATCAA 57.165 36.000 0.00 0.00 31.76 2.57
891 912 7.118825 CGTAACCATAGAGTACGATCCTAATCA 59.881 40.741 0.00 0.00 36.38 2.57
923 944 5.773239 TTCGACGGATTCAAAAGACATAC 57.227 39.130 0.00 0.00 0.00 2.39
958 984 5.026790 AGGGAGGTCATAAGCATCTATACC 58.973 45.833 0.00 0.00 0.00 2.73
965 991 3.342926 AGAGAGGGAGGTCATAAGCAT 57.657 47.619 0.00 0.00 0.00 3.79
966 992 2.856760 AGAGAGGGAGGTCATAAGCA 57.143 50.000 0.00 0.00 0.00 3.91
982 1008 3.248602 GTCATTACCGCAAAGGCATAGAG 59.751 47.826 0.00 0.00 46.52 2.43
993 1019 0.824109 CCAGAGGAGTCATTACCGCA 59.176 55.000 0.00 0.00 0.00 5.69
1021 1047 1.946768 ACGACAACATTGTGGTGAAGG 59.053 47.619 11.07 0.00 46.18 3.46
1028 1054 2.150390 TCCATGGACGACAACATTGTG 58.850 47.619 11.44 0.00 42.43 3.33
1033 1059 2.849294 TTGATCCATGGACGACAACA 57.151 45.000 18.99 7.92 0.00 3.33
1035 1061 3.949132 TGATTTGATCCATGGACGACAA 58.051 40.909 18.99 19.62 0.00 3.18
1055 1081 6.367421 CAAGTGAAATCCAATGCACAAAATG 58.633 36.000 0.00 0.00 33.85 2.32
1060 1086 2.629137 AGCAAGTGAAATCCAATGCACA 59.371 40.909 0.00 0.00 40.40 4.57
1064 1090 5.640189 AGAGAAGCAAGTGAAATCCAATG 57.360 39.130 0.00 0.00 0.00 2.82
1081 1107 1.274167 ACGCAATGGAACCGTAGAGAA 59.726 47.619 0.00 0.00 32.86 2.87
1083 1109 0.999406 CACGCAATGGAACCGTAGAG 59.001 55.000 0.00 0.00 33.39 2.43
1095 1121 1.382522 CTATCCCAAGCACACGCAAT 58.617 50.000 0.00 0.00 42.27 3.56
1198 1226 5.638133 AGCATATGAGCATTACCCTTCAAT 58.362 37.500 6.97 0.00 36.85 2.57
1212 1240 5.746307 ACAGTGCATTACAAGCATATGAG 57.254 39.130 6.97 0.00 44.79 2.90
1218 1246 6.280643 CCTACTATACAGTGCATTACAAGCA 58.719 40.000 0.00 0.00 40.19 3.91
1221 1249 6.479972 AGCCTACTATACAGTGCATTACAA 57.520 37.500 0.00 0.00 36.14 2.41
1357 1385 5.885912 TCAAGAGGCTTGAACTTTGTACTTT 59.114 36.000 7.36 0.00 0.00 2.66
1362 1415 3.879892 GAGTCAAGAGGCTTGAACTTTGT 59.120 43.478 11.07 0.00 0.00 2.83
1381 1434 2.159099 TGCGAGAAAGTGTGTGAAGAGT 60.159 45.455 0.00 0.00 0.00 3.24
1388 1441 3.740115 ACCTATTTGCGAGAAAGTGTGT 58.260 40.909 0.00 0.00 0.00 3.72
1483 1537 9.919416 TCTTTCCATACTATGAAATTCCATTCA 57.081 29.630 0.00 0.00 43.03 2.57
1503 1596 5.909610 CCGAATTGCGAATTATTCTCTTTCC 59.090 40.000 3.34 0.00 44.57 3.13
1515 1608 1.996786 CTGCAGCCCGAATTGCGAAT 61.997 55.000 0.00 0.00 44.57 3.34
1516 1609 2.671276 TGCAGCCCGAATTGCGAA 60.671 55.556 0.00 0.00 44.57 4.70
1534 1627 3.490419 GCCTTGATGGACTTCATGCAATC 60.490 47.826 0.00 0.00 38.35 2.67
1538 1631 0.379669 CGCCTTGATGGACTTCATGC 59.620 55.000 0.00 0.00 38.35 4.06
1557 1650 1.616159 TGGCACTTTAAAGGCTCCAC 58.384 50.000 19.14 7.62 0.00 4.02
1558 1651 2.373335 TTGGCACTTTAAAGGCTCCA 57.627 45.000 19.14 17.58 0.00 3.86
1572 1665 7.328404 TGTAGGGATCTATTTGATATTGGCA 57.672 36.000 0.00 0.00 35.14 4.92
1573 1666 8.515414 GTTTGTAGGGATCTATTTGATATTGGC 58.485 37.037 0.00 0.00 35.14 4.52
1589 1682 4.733077 TTTCCAAGGATGTTTGTAGGGA 57.267 40.909 0.00 0.00 0.00 4.20
1596 1689 6.498303 AGCTCCTTATTTTTCCAAGGATGTTT 59.502 34.615 3.66 0.00 40.34 2.83
1659 1774 5.102953 TCAGGATGTCTTATCCCTTGTTG 57.897 43.478 2.44 0.00 38.98 3.33
1683 1799 3.815401 ACACGAAGGAGTTTTGGAATCAG 59.185 43.478 0.00 0.00 0.00 2.90
1701 1817 7.694388 TGGAATCGAAATAGAAAGATACACG 57.306 36.000 0.00 0.00 0.00 4.49
1710 1826 7.519032 AAGGTGTTTTGGAATCGAAATAGAA 57.481 32.000 0.00 0.00 0.00 2.10
1711 1827 7.881232 ACTAAGGTGTTTTGGAATCGAAATAGA 59.119 33.333 0.00 0.00 0.00 1.98
1712 1828 7.962918 CACTAAGGTGTTTTGGAATCGAAATAG 59.037 37.037 0.00 0.00 38.54 1.73
1713 1829 7.812648 CACTAAGGTGTTTTGGAATCGAAATA 58.187 34.615 0.00 0.00 38.54 1.40
1714 1830 6.677913 CACTAAGGTGTTTTGGAATCGAAAT 58.322 36.000 0.00 0.00 38.54 2.17
1715 1831 6.067263 CACTAAGGTGTTTTGGAATCGAAA 57.933 37.500 0.00 0.00 38.54 3.46
1716 1832 5.682943 CACTAAGGTGTTTTGGAATCGAA 57.317 39.130 0.00 0.00 38.54 3.71
1730 1846 6.462628 GCCGGAATAGAGAAATACACTAAGGT 60.463 42.308 5.05 0.00 0.00 3.50
1731 1847 5.927115 GCCGGAATAGAGAAATACACTAAGG 59.073 44.000 5.05 0.00 0.00 2.69
1732 1848 6.513180 TGCCGGAATAGAGAAATACACTAAG 58.487 40.000 5.05 0.00 0.00 2.18
1733 1849 6.474140 TGCCGGAATAGAGAAATACACTAA 57.526 37.500 5.05 0.00 0.00 2.24
1734 1850 6.295123 GGATGCCGGAATAGAGAAATACACTA 60.295 42.308 5.05 0.00 0.00 2.74
1735 1851 5.511545 GGATGCCGGAATAGAGAAATACACT 60.512 44.000 5.05 0.00 0.00 3.55
1736 1852 4.691216 GGATGCCGGAATAGAGAAATACAC 59.309 45.833 5.05 0.00 0.00 2.90
1737 1853 4.262894 GGGATGCCGGAATAGAGAAATACA 60.263 45.833 5.05 0.00 0.00 2.29
1738 1854 4.254492 GGGATGCCGGAATAGAGAAATAC 58.746 47.826 5.05 0.00 0.00 1.89
1739 1855 3.263425 GGGGATGCCGGAATAGAGAAATA 59.737 47.826 5.05 0.00 0.00 1.40
1740 1856 2.040412 GGGGATGCCGGAATAGAGAAAT 59.960 50.000 5.05 0.00 0.00 2.17
1741 1857 1.420138 GGGGATGCCGGAATAGAGAAA 59.580 52.381 5.05 0.00 0.00 2.52
1742 1858 1.056660 GGGGATGCCGGAATAGAGAA 58.943 55.000 5.05 0.00 0.00 2.87
1763 1879 3.129813 ACTCGATATTGCGGTGTTAGTCA 59.870 43.478 0.00 0.00 0.00 3.41
1774 1890 0.106708 TCTGGCCCACTCGATATTGC 59.893 55.000 0.00 0.00 0.00 3.56
1775 1891 1.270518 CCTCTGGCCCACTCGATATTG 60.271 57.143 0.00 0.00 0.00 1.90
1795 1947 2.095161 CCTTCGGCGATGTAGAGATACC 60.095 54.545 11.76 0.00 0.00 2.73
1804 1956 0.035439 ATTTGACCCTTCGGCGATGT 60.035 50.000 11.76 8.82 0.00 3.06
1840 1992 9.559732 TGAAATGGAAGTATTATGAGGTACATG 57.440 33.333 0.00 0.00 39.77 3.21
1841 1993 9.561069 GTGAAATGGAAGTATTATGAGGTACAT 57.439 33.333 0.00 0.00 42.39 2.29
1848 2000 7.206789 TGGAGGTGAAATGGAAGTATTATGA 57.793 36.000 0.00 0.00 0.00 2.15
1856 2008 1.089920 CGCTGGAGGTGAAATGGAAG 58.910 55.000 0.00 0.00 0.00 3.46
1897 2049 0.806492 GCCTTTTAGCTCCGACTCCG 60.806 60.000 0.00 0.00 0.00 4.63
1927 2079 5.988561 AGGCATAGAAGAAACTTGATCGATC 59.011 40.000 18.72 18.72 0.00 3.69
1928 2080 5.923204 AGGCATAGAAGAAACTTGATCGAT 58.077 37.500 0.00 0.00 0.00 3.59
1964 2116 3.626996 ATGCCACGGCTTGCTGCTA 62.627 57.895 9.92 0.00 42.51 3.49
1976 2128 3.131478 CCGAAACGGGGATGCCAC 61.131 66.667 5.30 0.00 44.15 5.01
1996 2148 3.119779 GCCTCGCTAGTCGCTAAGATTAT 60.120 47.826 2.24 0.00 38.27 1.28
1999 2151 0.594110 GCCTCGCTAGTCGCTAAGAT 59.406 55.000 2.24 0.00 38.27 2.40
2026 2178 0.039035 TAAATTGGAAGTGGCGGCCT 59.961 50.000 21.46 0.00 0.00 5.19
2072 2224 2.442212 TACATCCGTTTGAGCGACAA 57.558 45.000 0.00 0.00 36.65 3.18
2076 2228 3.179795 CGTCTAATACATCCGTTTGAGCG 59.820 47.826 0.00 0.00 0.00 5.03
2085 2237 8.813643 AGCACTAAAATACGTCTAATACATCC 57.186 34.615 0.00 0.00 0.00 3.51
2089 2241 7.864379 TGCCTAGCACTAAAATACGTCTAATAC 59.136 37.037 0.00 0.00 31.71 1.89
2113 2265 1.226773 GCCGCTCAAATGGATGTGC 60.227 57.895 0.00 0.00 36.67 4.57
2116 2268 5.633830 ATTATTAGCCGCTCAAATGGATG 57.366 39.130 0.00 0.00 0.00 3.51
2119 2271 6.317088 CACATATTATTAGCCGCTCAAATGG 58.683 40.000 0.00 0.00 0.00 3.16
2129 2281 5.360591 CCTCCGATCCACATATTATTAGCC 58.639 45.833 0.00 0.00 0.00 3.93
2130 2282 5.128827 TCCCTCCGATCCACATATTATTAGC 59.871 44.000 0.00 0.00 0.00 3.09
2140 2292 0.333652 TGTACTCCCTCCGATCCACA 59.666 55.000 0.00 0.00 0.00 4.17
2141 2293 1.705873 ATGTACTCCCTCCGATCCAC 58.294 55.000 0.00 0.00 0.00 4.02
2142 2294 2.471815 AATGTACTCCCTCCGATCCA 57.528 50.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.