Multiple sequence alignment - TraesCS4D01G071200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G071200 chr4D 100.000 3799 0 0 1 3799 46294023 46290225 0.000000e+00 7016.0
1 TraesCS4D01G071200 chr4D 96.259 294 11 0 1410 1703 306374476 306374183 2.050000e-132 483.0
2 TraesCS4D01G071200 chr4D 95.238 294 13 1 1410 1703 455276073 455275781 7.430000e-127 464.0
3 TraesCS4D01G071200 chr4A 93.030 1607 84 13 1711 3297 552699081 552700679 0.000000e+00 2322.0
4 TraesCS4D01G071200 chr4A 92.444 1244 51 14 1 1217 552697519 552698746 0.000000e+00 1736.0
5 TraesCS4D01G071200 chr4A 92.353 170 8 4 1241 1409 552698925 552699090 1.760000e-58 237.0
6 TraesCS4D01G071200 chr4B 95.389 1323 47 11 1711 3030 67771841 67773152 0.000000e+00 2093.0
7 TraesCS4D01G071200 chr4B 88.007 1184 51 41 118 1247 67770510 67771656 0.000000e+00 1315.0
8 TraesCS4D01G071200 chr4B 86.277 736 63 13 3086 3799 67773151 67773870 0.000000e+00 765.0
9 TraesCS4D01G071200 chr4B 90.698 172 8 5 1241 1409 67771684 67771850 4.940000e-54 222.0
10 TraesCS4D01G071200 chr7D 95.932 295 12 0 1410 1704 62130026 62130320 2.650000e-131 479.0
11 TraesCS4D01G071200 chr7D 78.155 206 43 2 1934 2138 296497294 296497498 3.080000e-26 130.0
12 TraesCS4D01G071200 chr7D 82.550 149 21 3 1003 1146 438368470 438368618 3.980000e-25 126.0
13 TraesCS4D01G071200 chr7D 76.506 166 32 7 997 1157 382255424 382255587 2.430000e-12 84.2
14 TraesCS4D01G071200 chr6D 95.918 294 12 0 1410 1703 156568658 156568365 9.550000e-131 477.0
15 TraesCS4D01G071200 chr3D 95.593 295 12 1 1410 1704 5561429 5561722 4.440000e-129 472.0
16 TraesCS4D01G071200 chr5D 95.578 294 12 1 1410 1703 118066699 118066407 1.600000e-128 470.0
17 TraesCS4D01G071200 chr1D 95.254 295 11 2 1410 1704 24588020 24588311 7.430000e-127 464.0
18 TraesCS4D01G071200 chr1D 95.238 294 12 2 1410 1703 208753567 208753858 7.430000e-127 464.0
19 TraesCS4D01G071200 chr7A 94.631 298 14 2 1410 1707 75038464 75038759 9.620000e-126 460.0
20 TraesCS4D01G071200 chr7A 83.942 137 19 1 1013 1146 489163067 489163203 1.110000e-25 128.0
21 TraesCS4D01G071200 chr7A 77.108 166 31 7 997 1157 430240153 430240316 5.230000e-14 89.8
22 TraesCS4D01G071200 chrUn 77.670 206 44 2 1934 2138 116282999 116283203 1.430000e-24 124.0
23 TraesCS4D01G071200 chr7B 77.670 206 44 2 1934 2138 339606246 339606450 1.430000e-24 124.0
24 TraesCS4D01G071200 chr7B 83.582 134 19 1 1022 1152 455272180 455272047 5.150000e-24 122.0
25 TraesCS4D01G071200 chr7B 77.108 166 31 7 997 1157 376430996 376431159 5.230000e-14 89.8
26 TraesCS4D01G071200 chr2D 78.472 144 27 4 1019 1160 54487972 54487831 1.450000e-14 91.6
27 TraesCS4D01G071200 chr2B 78.676 136 25 4 1019 1152 85177903 85177770 1.880000e-13 87.9
28 TraesCS4D01G071200 chr2A 76.667 150 31 4 1013 1160 54882383 54882530 3.150000e-11 80.5
29 TraesCS4D01G071200 chr2A 94.118 51 1 2 1019 1068 54955471 54955422 4.070000e-10 76.8
30 TraesCS4D01G071200 chr2A 95.349 43 2 0 1115 1157 708058513 708058555 6.810000e-08 69.4
31 TraesCS4D01G071200 chr6B 82.500 80 14 0 1973 2052 710105908 710105829 1.890000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G071200 chr4D 46290225 46294023 3798 True 7016.000000 7016 100.00000 1 3799 1 chr4D.!!$R1 3798
1 TraesCS4D01G071200 chr4A 552697519 552700679 3160 False 1431.666667 2322 92.60900 1 3297 3 chr4A.!!$F1 3296
2 TraesCS4D01G071200 chr4B 67770510 67773870 3360 False 1098.750000 2093 90.09275 118 3799 4 chr4B.!!$F1 3681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 501 0.179111 TGCCAATCGTCTCATCGACC 60.179 55.0 0.0 0.0 42.56 4.79 F
1541 1760 0.036022 GGCCCAGACTATCAGCATCC 59.964 60.0 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1897 2120 0.036010 AGCTTTGCCTGCAGACGTAT 60.036 50.0 17.39 0.00 0.0 3.06 R
3088 3313 0.031178 GCAAAATATCAGCCGGCCAG 59.969 55.0 26.15 17.31 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 5.762279 TCAAAATGGAGGATAAACCCCTAC 58.238 41.667 0.00 0.00 40.05 3.18
95 106 3.116862 TGGAGGATAAACCCCTACTCGAT 60.117 47.826 0.00 0.00 40.05 3.59
97 108 4.150359 GAGGATAAACCCCTACTCGATGA 58.850 47.826 0.00 0.00 40.05 2.92
101 112 3.611766 AAACCCCTACTCGATGACAAG 57.388 47.619 0.00 0.00 0.00 3.16
114 125 5.003160 TCGATGACAAGATGACAATTGGTT 58.997 37.500 10.83 0.00 0.00 3.67
167 178 4.574674 TTAGCATGTCACATTTCCTCCT 57.425 40.909 0.00 0.00 0.00 3.69
181 192 5.906772 TTTCCTCCTTTCTCTTACCTTGT 57.093 39.130 0.00 0.00 0.00 3.16
191 202 6.937436 TTCTCTTACCTTGTTTCCACTTTC 57.063 37.500 0.00 0.00 0.00 2.62
209 220 6.145048 CCACTTTCTTGCATCTTTTGACATTC 59.855 38.462 0.00 0.00 0.00 2.67
406 440 2.030412 TGCAAGCCGATCACACGT 59.970 55.556 0.00 0.00 0.00 4.49
407 441 1.011968 GTGCAAGCCGATCACACGTA 61.012 55.000 0.00 0.00 0.00 3.57
408 442 1.011968 TGCAAGCCGATCACACGTAC 61.012 55.000 0.00 0.00 0.00 3.67
409 443 1.988409 CAAGCCGATCACACGTACG 59.012 57.895 15.01 15.01 0.00 3.67
464 498 1.920051 CGTGCCAATCGTCTCATCG 59.080 57.895 0.00 0.00 0.00 3.84
467 501 0.179111 TGCCAATCGTCTCATCGACC 60.179 55.000 0.00 0.00 42.56 4.79
515 556 7.903145 TGCCACTAAGAAACTCTAGTTATTCA 58.097 34.615 0.00 0.00 37.25 2.57
644 699 0.679002 GAGACACCCATGCATGCAGT 60.679 55.000 26.69 17.58 0.00 4.40
675 730 2.012051 GCAATCGACGGGTGGATCTTT 61.012 52.381 0.00 0.00 0.00 2.52
693 748 0.981943 TTCCTCCTCCGACCTTTTCC 59.018 55.000 0.00 0.00 0.00 3.13
743 798 3.408853 CCTCCCCGTCCCTTTCCC 61.409 72.222 0.00 0.00 0.00 3.97
744 799 3.782443 CTCCCCGTCCCTTTCCCG 61.782 72.222 0.00 0.00 0.00 5.14
787 842 3.406512 ACAGGGGCTCTAGAAGTATGT 57.593 47.619 0.00 0.00 0.00 2.29
898 953 0.379669 CTTCTGCCATGGATCGTTGC 59.620 55.000 18.40 0.00 0.00 4.17
943 998 1.892819 GCTCCTGCTGCTGGACTGTA 61.893 60.000 22.44 4.16 36.03 2.74
1161 1223 2.414612 TGGGACCTTCCAAGTAAGTGT 58.585 47.619 0.00 0.00 38.64 3.55
1165 1227 3.568430 GGACCTTCCAAGTAAGTGTTTGG 59.432 47.826 0.00 0.00 44.15 3.28
1167 1229 5.370679 GACCTTCCAAGTAAGTGTTTGGTA 58.629 41.667 3.46 0.00 43.43 3.25
1169 1231 5.104235 ACCTTCCAAGTAAGTGTTTGGTACT 60.104 40.000 3.46 0.00 43.43 2.73
1170 1232 5.826208 CCTTCCAAGTAAGTGTTTGGTACTT 59.174 40.000 3.46 0.00 43.43 2.24
1171 1233 6.017357 CCTTCCAAGTAAGTGTTTGGTACTTC 60.017 42.308 3.46 0.00 43.43 3.01
1172 1234 5.051816 TCCAAGTAAGTGTTTGGTACTTCG 58.948 41.667 3.46 0.00 43.43 3.79
1173 1235 5.051816 CCAAGTAAGTGTTTGGTACTTCGA 58.948 41.667 0.00 0.00 39.18 3.71
1174 1236 5.176958 CCAAGTAAGTGTTTGGTACTTCGAG 59.823 44.000 0.00 0.00 39.18 4.04
1175 1237 4.879598 AGTAAGTGTTTGGTACTTCGAGG 58.120 43.478 0.00 0.00 39.06 4.63
1176 1238 3.832615 AAGTGTTTGGTACTTCGAGGT 57.167 42.857 5.23 5.23 33.28 3.85
1178 1240 3.725490 AGTGTTTGGTACTTCGAGGTTC 58.275 45.455 5.17 0.00 0.00 3.62
1179 1241 2.473984 GTGTTTGGTACTTCGAGGTTCG 59.526 50.000 5.17 0.00 42.10 3.95
1217 1279 2.616960 TGCACATTCACTCGTACCATC 58.383 47.619 0.00 0.00 0.00 3.51
1218 1280 2.233676 TGCACATTCACTCGTACCATCT 59.766 45.455 0.00 0.00 0.00 2.90
1227 1410 2.496470 ACTCGTACCATCTGGGAAAGAC 59.504 50.000 0.54 0.00 37.88 3.01
1247 1430 4.586001 AGACACCTGATTTGAATTTGTGCT 59.414 37.500 0.00 0.00 0.00 4.40
1248 1431 5.069516 AGACACCTGATTTGAATTTGTGCTT 59.930 36.000 0.00 0.00 0.00 3.91
1262 1479 4.751767 TTGTGCTTGTTCCTGGATTTTT 57.248 36.364 0.00 0.00 0.00 1.94
1263 1480 4.057406 TGTGCTTGTTCCTGGATTTTTG 57.943 40.909 0.00 0.00 0.00 2.44
1264 1481 3.450457 TGTGCTTGTTCCTGGATTTTTGT 59.550 39.130 0.00 0.00 0.00 2.83
1265 1482 4.081198 TGTGCTTGTTCCTGGATTTTTGTT 60.081 37.500 0.00 0.00 0.00 2.83
1300 1517 7.224362 CCATTCACTCTTGTGTGCAAATTAAAA 59.776 33.333 0.00 0.00 44.14 1.52
1325 1542 3.559238 ACTAGTGCCAATTGCTTTTCG 57.441 42.857 0.00 0.00 42.00 3.46
1336 1553 3.896648 TTGCTTTTCGACCATCTTGTC 57.103 42.857 0.00 0.00 0.00 3.18
1396 1615 6.668283 AGACTTCTAATGCCTTGACCTAGTTA 59.332 38.462 0.00 0.00 0.00 2.24
1397 1616 7.345914 AGACTTCTAATGCCTTGACCTAGTTAT 59.654 37.037 0.00 0.00 0.00 1.89
1398 1617 7.862675 ACTTCTAATGCCTTGACCTAGTTATT 58.137 34.615 0.00 0.00 0.00 1.40
1399 1618 8.329502 ACTTCTAATGCCTTGACCTAGTTATTT 58.670 33.333 0.00 0.00 0.00 1.40
1400 1619 9.832445 CTTCTAATGCCTTGACCTAGTTATTTA 57.168 33.333 0.00 0.00 0.00 1.40
1402 1621 9.832445 TCTAATGCCTTGACCTAGTTATTTAAG 57.168 33.333 0.00 0.00 0.00 1.85
1403 1622 9.832445 CTAATGCCTTGACCTAGTTATTTAAGA 57.168 33.333 0.00 0.00 0.00 2.10
1405 1624 8.682936 ATGCCTTGACCTAGTTATTTAAGATG 57.317 34.615 0.00 0.00 0.00 2.90
1406 1625 6.542370 TGCCTTGACCTAGTTATTTAAGATGC 59.458 38.462 0.00 0.00 0.00 3.91
1407 1626 6.542370 GCCTTGACCTAGTTATTTAAGATGCA 59.458 38.462 0.00 0.00 0.00 3.96
1408 1627 7.467403 GCCTTGACCTAGTTATTTAAGATGCAC 60.467 40.741 0.00 0.00 0.00 4.57
1409 1628 7.012421 CCTTGACCTAGTTATTTAAGATGCACC 59.988 40.741 0.00 0.00 0.00 5.01
1410 1629 6.046593 TGACCTAGTTATTTAAGATGCACCG 58.953 40.000 0.00 0.00 0.00 4.94
1411 1630 5.985911 ACCTAGTTATTTAAGATGCACCGT 58.014 37.500 0.00 0.00 0.00 4.83
1412 1631 6.047231 ACCTAGTTATTTAAGATGCACCGTC 58.953 40.000 0.00 0.00 0.00 4.79
1413 1632 5.465724 CCTAGTTATTTAAGATGCACCGTCC 59.534 44.000 0.00 0.00 0.00 4.79
1414 1633 5.099042 AGTTATTTAAGATGCACCGTCCT 57.901 39.130 0.00 0.00 0.00 3.85
1415 1634 4.876107 AGTTATTTAAGATGCACCGTCCTG 59.124 41.667 0.00 0.00 0.00 3.86
1416 1635 2.107950 TTTAAGATGCACCGTCCTGG 57.892 50.000 0.00 0.00 46.41 4.45
1417 1636 0.392461 TTAAGATGCACCGTCCTGGC 60.392 55.000 0.00 0.00 43.94 4.85
1418 1637 1.264749 TAAGATGCACCGTCCTGGCT 61.265 55.000 0.00 0.00 43.94 4.75
1419 1638 2.045926 GATGCACCGTCCTGGCTT 60.046 61.111 0.00 0.00 43.94 4.35
1420 1639 1.220749 GATGCACCGTCCTGGCTTA 59.779 57.895 0.00 0.00 43.94 3.09
1421 1640 0.811616 GATGCACCGTCCTGGCTTAG 60.812 60.000 0.00 0.00 43.94 2.18
1430 1649 2.512515 CTGGCTTAGGAGTGCGCC 60.513 66.667 4.18 0.00 42.78 6.53
1431 1650 4.451150 TGGCTTAGGAGTGCGCCG 62.451 66.667 4.18 0.00 45.36 6.46
1433 1652 4.143333 GCTTAGGAGTGCGCCGGA 62.143 66.667 5.05 0.00 0.00 5.14
1434 1653 2.202756 CTTAGGAGTGCGCCGGAC 60.203 66.667 5.05 0.00 0.00 4.79
1435 1654 2.678934 TTAGGAGTGCGCCGGACT 60.679 61.111 12.17 12.17 0.00 3.85
1436 1655 2.890847 CTTAGGAGTGCGCCGGACTG 62.891 65.000 18.13 0.00 0.00 3.51
1463 1682 4.910585 CCATACCCGGCAGGCGTC 62.911 72.222 16.17 0.00 40.58 5.19
1464 1683 4.910585 CATACCCGGCAGGCGTCC 62.911 72.222 16.17 0.00 40.58 4.79
1479 1698 4.232905 TCCTGGTTGGGACCTCAG 57.767 61.111 0.00 0.00 46.66 3.35
1480 1699 1.538876 TCCTGGTTGGGACCTCAGG 60.539 63.158 15.03 15.03 46.66 3.86
1481 1700 1.847968 CCTGGTTGGGACCTCAGGT 60.848 63.158 0.00 0.00 46.66 4.00
1495 1714 4.949121 ACCTCAGGTCTTAGATGTTAGGT 58.051 43.478 0.00 4.26 0.00 3.08
1496 1715 5.342866 ACCTCAGGTCTTAGATGTTAGGTT 58.657 41.667 0.00 0.00 30.79 3.50
1497 1716 5.785940 ACCTCAGGTCTTAGATGTTAGGTTT 59.214 40.000 0.00 0.00 30.79 3.27
1498 1717 6.109359 CCTCAGGTCTTAGATGTTAGGTTTG 58.891 44.000 0.00 0.00 0.00 2.93
1499 1718 6.049955 TCAGGTCTTAGATGTTAGGTTTGG 57.950 41.667 0.00 0.00 0.00 3.28
1500 1719 4.636206 CAGGTCTTAGATGTTAGGTTTGGC 59.364 45.833 0.00 0.00 0.00 4.52
1501 1720 4.536489 AGGTCTTAGATGTTAGGTTTGGCT 59.464 41.667 0.00 0.00 0.00 4.75
1502 1721 4.636206 GGTCTTAGATGTTAGGTTTGGCTG 59.364 45.833 0.00 0.00 0.00 4.85
1503 1722 4.095036 GTCTTAGATGTTAGGTTTGGCTGC 59.905 45.833 0.00 0.00 0.00 5.25
1504 1723 1.453155 AGATGTTAGGTTTGGCTGCG 58.547 50.000 0.00 0.00 0.00 5.18
1505 1724 1.003118 AGATGTTAGGTTTGGCTGCGA 59.997 47.619 0.00 0.00 0.00 5.10
1506 1725 1.398390 GATGTTAGGTTTGGCTGCGAG 59.602 52.381 0.00 0.00 0.00 5.03
1507 1726 0.605319 TGTTAGGTTTGGCTGCGAGG 60.605 55.000 0.00 0.00 0.00 4.63
1508 1727 0.605589 GTTAGGTTTGGCTGCGAGGT 60.606 55.000 0.00 0.00 0.00 3.85
1509 1728 0.321298 TTAGGTTTGGCTGCGAGGTC 60.321 55.000 0.00 0.00 0.00 3.85
1510 1729 1.192146 TAGGTTTGGCTGCGAGGTCT 61.192 55.000 0.00 0.00 0.00 3.85
1511 1730 2.328099 GGTTTGGCTGCGAGGTCTG 61.328 63.158 0.00 0.00 0.00 3.51
1512 1731 1.598130 GTTTGGCTGCGAGGTCTGT 60.598 57.895 0.00 0.00 0.00 3.41
1513 1732 1.148273 TTTGGCTGCGAGGTCTGTT 59.852 52.632 0.00 0.00 0.00 3.16
1514 1733 0.465460 TTTGGCTGCGAGGTCTGTTT 60.465 50.000 0.00 0.00 0.00 2.83
1515 1734 1.165907 TTGGCTGCGAGGTCTGTTTG 61.166 55.000 0.00 0.00 0.00 2.93
1516 1735 2.328099 GGCTGCGAGGTCTGTTTGG 61.328 63.158 0.00 0.00 0.00 3.28
1517 1736 1.598130 GCTGCGAGGTCTGTTTGGT 60.598 57.895 0.00 0.00 0.00 3.67
1518 1737 0.320421 GCTGCGAGGTCTGTTTGGTA 60.320 55.000 0.00 0.00 0.00 3.25
1519 1738 1.676014 GCTGCGAGGTCTGTTTGGTAT 60.676 52.381 0.00 0.00 0.00 2.73
1520 1739 2.699954 CTGCGAGGTCTGTTTGGTATT 58.300 47.619 0.00 0.00 0.00 1.89
1521 1740 3.857052 CTGCGAGGTCTGTTTGGTATTA 58.143 45.455 0.00 0.00 0.00 0.98
1522 1741 3.857052 TGCGAGGTCTGTTTGGTATTAG 58.143 45.455 0.00 0.00 0.00 1.73
1523 1742 3.195661 GCGAGGTCTGTTTGGTATTAGG 58.804 50.000 0.00 0.00 0.00 2.69
1524 1743 3.195661 CGAGGTCTGTTTGGTATTAGGC 58.804 50.000 0.00 0.00 0.00 3.93
1525 1744 3.542648 GAGGTCTGTTTGGTATTAGGCC 58.457 50.000 0.00 0.00 35.18 5.19
1526 1745 2.241430 AGGTCTGTTTGGTATTAGGCCC 59.759 50.000 0.00 0.00 35.54 5.80
1527 1746 2.025699 GGTCTGTTTGGTATTAGGCCCA 60.026 50.000 0.00 0.00 0.00 5.36
1528 1747 3.279434 GTCTGTTTGGTATTAGGCCCAG 58.721 50.000 0.00 0.00 31.04 4.45
1529 1748 3.054655 GTCTGTTTGGTATTAGGCCCAGA 60.055 47.826 0.00 0.00 31.04 3.86
1530 1749 3.054655 TCTGTTTGGTATTAGGCCCAGAC 60.055 47.826 0.00 0.00 36.61 3.51
1531 1750 2.916934 TGTTTGGTATTAGGCCCAGACT 59.083 45.455 0.00 0.00 36.91 3.24
1532 1751 4.105577 TGTTTGGTATTAGGCCCAGACTA 58.894 43.478 0.00 0.00 36.91 2.59
1533 1752 4.724798 TGTTTGGTATTAGGCCCAGACTAT 59.275 41.667 0.00 0.00 36.91 2.12
1534 1753 5.163237 TGTTTGGTATTAGGCCCAGACTATC 60.163 44.000 0.00 0.00 36.91 2.08
1535 1754 4.207698 TGGTATTAGGCCCAGACTATCA 57.792 45.455 0.00 0.00 0.00 2.15
1536 1755 4.160329 TGGTATTAGGCCCAGACTATCAG 58.840 47.826 0.00 0.00 0.00 2.90
1537 1756 3.055747 GGTATTAGGCCCAGACTATCAGC 60.056 52.174 0.00 0.00 0.00 4.26
1538 1757 2.174685 TTAGGCCCAGACTATCAGCA 57.825 50.000 0.00 0.00 0.00 4.41
1539 1758 2.405618 TAGGCCCAGACTATCAGCAT 57.594 50.000 0.00 0.00 0.00 3.79
1540 1759 1.055040 AGGCCCAGACTATCAGCATC 58.945 55.000 0.00 0.00 0.00 3.91
1541 1760 0.036022 GGCCCAGACTATCAGCATCC 59.964 60.000 0.00 0.00 0.00 3.51
1542 1761 0.036022 GCCCAGACTATCAGCATCCC 59.964 60.000 0.00 0.00 0.00 3.85
1543 1762 1.727062 CCCAGACTATCAGCATCCCT 58.273 55.000 0.00 0.00 0.00 4.20
1544 1763 2.894731 CCCAGACTATCAGCATCCCTA 58.105 52.381 0.00 0.00 0.00 3.53
1545 1764 2.564947 CCCAGACTATCAGCATCCCTAC 59.435 54.545 0.00 0.00 0.00 3.18
1546 1765 3.234353 CCAGACTATCAGCATCCCTACA 58.766 50.000 0.00 0.00 0.00 2.74
1547 1766 3.837146 CCAGACTATCAGCATCCCTACAT 59.163 47.826 0.00 0.00 0.00 2.29
1548 1767 4.081752 CCAGACTATCAGCATCCCTACATC 60.082 50.000 0.00 0.00 0.00 3.06
1549 1768 4.525874 CAGACTATCAGCATCCCTACATCA 59.474 45.833 0.00 0.00 0.00 3.07
1550 1769 5.011431 CAGACTATCAGCATCCCTACATCAA 59.989 44.000 0.00 0.00 0.00 2.57
1551 1770 5.011533 AGACTATCAGCATCCCTACATCAAC 59.988 44.000 0.00 0.00 0.00 3.18
1552 1771 4.904251 ACTATCAGCATCCCTACATCAACT 59.096 41.667 0.00 0.00 0.00 3.16
1553 1772 3.548745 TCAGCATCCCTACATCAACTG 57.451 47.619 0.00 0.00 0.00 3.16
1554 1773 2.171237 TCAGCATCCCTACATCAACTGG 59.829 50.000 0.00 0.00 0.00 4.00
1555 1774 2.171237 CAGCATCCCTACATCAACTGGA 59.829 50.000 0.00 0.00 0.00 3.86
1556 1775 3.051581 AGCATCCCTACATCAACTGGAT 58.948 45.455 0.00 0.00 36.26 3.41
1557 1776 4.040829 CAGCATCCCTACATCAACTGGATA 59.959 45.833 0.00 0.00 34.12 2.59
1558 1777 4.285517 AGCATCCCTACATCAACTGGATAG 59.714 45.833 0.00 0.00 34.12 2.08
1559 1778 4.564406 GCATCCCTACATCAACTGGATAGG 60.564 50.000 0.00 0.00 34.12 2.57
1560 1779 4.552883 TCCCTACATCAACTGGATAGGA 57.447 45.455 0.00 0.00 34.78 2.94
1561 1780 4.483950 TCCCTACATCAACTGGATAGGAG 58.516 47.826 0.00 0.00 34.78 3.69
1562 1781 4.078571 TCCCTACATCAACTGGATAGGAGT 60.079 45.833 0.00 0.00 34.78 3.85
1563 1782 5.135533 TCCCTACATCAACTGGATAGGAGTA 59.864 44.000 0.00 0.00 34.78 2.59
1564 1783 5.478679 CCCTACATCAACTGGATAGGAGTAG 59.521 48.000 0.00 0.00 34.78 2.57
1565 1784 4.946478 ACATCAACTGGATAGGAGTAGC 57.054 45.455 0.00 0.00 33.95 3.58
1566 1785 3.319405 ACATCAACTGGATAGGAGTAGCG 59.681 47.826 0.00 0.00 33.95 4.26
1567 1786 3.292492 TCAACTGGATAGGAGTAGCGA 57.708 47.619 0.00 0.00 0.00 4.93
1568 1787 2.950309 TCAACTGGATAGGAGTAGCGAC 59.050 50.000 0.00 0.00 0.00 5.19
1569 1788 2.688446 CAACTGGATAGGAGTAGCGACA 59.312 50.000 0.00 0.00 0.00 4.35
1570 1789 2.577700 ACTGGATAGGAGTAGCGACAG 58.422 52.381 0.00 0.00 0.00 3.51
1571 1790 2.172930 ACTGGATAGGAGTAGCGACAGA 59.827 50.000 0.00 0.00 0.00 3.41
1572 1791 3.181438 ACTGGATAGGAGTAGCGACAGAT 60.181 47.826 0.00 0.00 0.00 2.90
1573 1792 3.149981 TGGATAGGAGTAGCGACAGATG 58.850 50.000 0.00 0.00 0.00 2.90
1574 1793 3.150767 GGATAGGAGTAGCGACAGATGT 58.849 50.000 0.00 0.00 0.00 3.06
1575 1794 3.570550 GGATAGGAGTAGCGACAGATGTT 59.429 47.826 0.00 0.00 0.00 2.71
1576 1795 2.949451 AGGAGTAGCGACAGATGTTG 57.051 50.000 0.00 0.00 0.00 3.33
1584 1803 1.550065 CGACAGATGTTGCCTAGACG 58.450 55.000 0.00 0.00 0.00 4.18
1585 1804 1.799181 CGACAGATGTTGCCTAGACGG 60.799 57.143 0.00 0.00 0.00 4.79
1586 1805 1.204941 GACAGATGTTGCCTAGACGGT 59.795 52.381 0.00 0.00 34.25 4.83
1587 1806 1.066858 ACAGATGTTGCCTAGACGGTG 60.067 52.381 0.00 0.00 34.25 4.94
1588 1807 0.537188 AGATGTTGCCTAGACGGTGG 59.463 55.000 0.00 0.00 34.25 4.61
1594 1813 3.364277 GCCTAGACGGTGGCTTTAG 57.636 57.895 1.01 0.00 45.26 1.85
1595 1814 0.535797 GCCTAGACGGTGGCTTTAGT 59.464 55.000 1.01 0.00 45.26 2.24
1596 1815 1.471153 GCCTAGACGGTGGCTTTAGTC 60.471 57.143 1.01 0.00 45.26 2.59
1597 1816 2.100989 CCTAGACGGTGGCTTTAGTCT 58.899 52.381 9.53 9.53 44.90 3.24
1598 1817 2.496470 CCTAGACGGTGGCTTTAGTCTT 59.504 50.000 9.79 0.00 42.99 3.01
1599 1818 3.698040 CCTAGACGGTGGCTTTAGTCTTA 59.302 47.826 9.79 0.00 42.99 2.10
1600 1819 3.589495 AGACGGTGGCTTTAGTCTTAC 57.411 47.619 0.00 0.00 40.64 2.34
1601 1820 3.163467 AGACGGTGGCTTTAGTCTTACT 58.837 45.455 0.00 0.00 40.64 2.24
1602 1821 4.338879 AGACGGTGGCTTTAGTCTTACTA 58.661 43.478 0.00 0.00 40.64 1.82
1603 1822 4.954826 AGACGGTGGCTTTAGTCTTACTAT 59.045 41.667 0.00 0.00 40.64 2.12
1604 1823 5.421374 AGACGGTGGCTTTAGTCTTACTATT 59.579 40.000 0.00 0.00 40.64 1.73
1605 1824 5.416947 ACGGTGGCTTTAGTCTTACTATTG 58.583 41.667 0.00 0.00 29.64 1.90
1606 1825 5.046807 ACGGTGGCTTTAGTCTTACTATTGT 60.047 40.000 0.00 0.00 29.64 2.71
1607 1826 6.153340 ACGGTGGCTTTAGTCTTACTATTGTA 59.847 38.462 0.00 0.00 29.64 2.41
1608 1827 7.147776 ACGGTGGCTTTAGTCTTACTATTGTAT 60.148 37.037 0.00 0.00 29.64 2.29
1609 1828 7.169308 CGGTGGCTTTAGTCTTACTATTGTATG 59.831 40.741 0.00 0.00 29.64 2.39
1610 1829 8.202137 GGTGGCTTTAGTCTTACTATTGTATGA 58.798 37.037 0.00 0.00 29.64 2.15
1611 1830 9.765795 GTGGCTTTAGTCTTACTATTGTATGAT 57.234 33.333 6.27 0.81 35.97 2.45
1628 1847 8.458573 TTGTATGATTTTGTAAGGTCTTGTGT 57.541 30.769 0.00 0.00 0.00 3.72
1629 1848 7.870826 TGTATGATTTTGTAAGGTCTTGTGTG 58.129 34.615 0.00 0.00 0.00 3.82
1630 1849 7.717436 TGTATGATTTTGTAAGGTCTTGTGTGA 59.283 33.333 0.00 0.00 0.00 3.58
1631 1850 7.581213 ATGATTTTGTAAGGTCTTGTGTGAA 57.419 32.000 0.00 0.00 0.00 3.18
1632 1851 7.581213 TGATTTTGTAAGGTCTTGTGTGAAT 57.419 32.000 0.00 0.00 0.00 2.57
1633 1852 8.684386 TGATTTTGTAAGGTCTTGTGTGAATA 57.316 30.769 0.00 0.00 0.00 1.75
1634 1853 9.295825 TGATTTTGTAAGGTCTTGTGTGAATAT 57.704 29.630 0.00 0.00 0.00 1.28
1649 1868 9.853555 TTGTGTGAATATTTAATAAAGTGGCTG 57.146 29.630 0.00 0.00 0.00 4.85
1650 1869 7.973388 TGTGTGAATATTTAATAAAGTGGCTGC 59.027 33.333 0.00 0.00 0.00 5.25
1651 1870 7.973388 GTGTGAATATTTAATAAAGTGGCTGCA 59.027 33.333 0.50 0.00 0.00 4.41
1652 1871 8.694540 TGTGAATATTTAATAAAGTGGCTGCAT 58.305 29.630 0.50 0.00 0.00 3.96
1653 1872 8.971321 GTGAATATTTAATAAAGTGGCTGCATG 58.029 33.333 0.50 0.00 0.00 4.06
1654 1873 7.652909 TGAATATTTAATAAAGTGGCTGCATGC 59.347 33.333 11.82 11.82 41.94 4.06
1655 1874 4.797800 TTTAATAAAGTGGCTGCATGCA 57.202 36.364 21.29 21.29 45.15 3.96
1656 1875 5.341872 TTTAATAAAGTGGCTGCATGCAT 57.658 34.783 22.97 6.91 45.15 3.96
1657 1876 3.447918 AATAAAGTGGCTGCATGCATC 57.552 42.857 22.97 17.75 45.15 3.91
1658 1877 0.734309 TAAAGTGGCTGCATGCATCG 59.266 50.000 22.97 12.00 45.15 3.84
1659 1878 1.246056 AAAGTGGCTGCATGCATCGT 61.246 50.000 22.97 7.77 45.15 3.73
1660 1879 1.651240 AAGTGGCTGCATGCATCGTC 61.651 55.000 22.97 13.00 45.15 4.20
1661 1880 2.825387 TGGCTGCATGCATCGTCC 60.825 61.111 22.97 19.03 45.15 4.79
1662 1881 3.945434 GGCTGCATGCATCGTCCG 61.945 66.667 22.97 9.56 45.15 4.79
1663 1882 3.945434 GCTGCATGCATCGTCCGG 61.945 66.667 22.97 8.76 42.31 5.14
1664 1883 2.202919 CTGCATGCATCGTCCGGA 60.203 61.111 22.97 0.00 0.00 5.14
1665 1884 1.596203 CTGCATGCATCGTCCGGAT 60.596 57.895 22.97 0.00 35.09 4.18
1671 1890 4.333095 CATCGTCCGGATGCAGAG 57.667 61.111 19.40 4.58 45.57 3.35
1672 1891 1.300465 CATCGTCCGGATGCAGAGG 60.300 63.158 19.40 8.89 45.57 3.69
1673 1892 3.157217 ATCGTCCGGATGCAGAGGC 62.157 63.158 19.40 0.00 41.68 4.70
1674 1893 4.899239 CGTCCGGATGCAGAGGCC 62.899 72.222 11.52 0.00 40.13 5.19
1675 1894 4.899239 GTCCGGATGCAGAGGCCG 62.899 72.222 7.81 11.68 44.42 6.13
1684 1903 3.330720 CAGAGGCCGGGGGTCTTT 61.331 66.667 2.18 0.00 38.01 2.52
1685 1904 3.009714 AGAGGCCGGGGGTCTTTC 61.010 66.667 2.18 0.00 38.01 2.62
1686 1905 3.009714 GAGGCCGGGGGTCTTTCT 61.010 66.667 2.18 0.00 38.01 2.52
1687 1906 3.009714 AGGCCGGGGGTCTTTCTC 61.010 66.667 2.18 0.00 31.15 2.87
1688 1907 4.111053 GGCCGGGGGTCTTTCTCC 62.111 72.222 2.18 0.00 35.52 3.71
1689 1908 3.009714 GCCGGGGGTCTTTCTCCT 61.010 66.667 2.18 0.00 36.78 3.69
1690 1909 2.603652 GCCGGGGGTCTTTCTCCTT 61.604 63.158 2.18 0.00 36.78 3.36
1691 1910 2.075837 CCGGGGGTCTTTCTCCTTT 58.924 57.895 0.00 0.00 36.78 3.11
1692 1911 0.404426 CCGGGGGTCTTTCTCCTTTT 59.596 55.000 0.00 0.00 36.78 2.27
1693 1912 1.613520 CCGGGGGTCTTTCTCCTTTTC 60.614 57.143 0.00 0.00 36.78 2.29
1694 1913 1.351350 CGGGGGTCTTTCTCCTTTTCT 59.649 52.381 0.00 0.00 36.78 2.52
1695 1914 2.570302 CGGGGGTCTTTCTCCTTTTCTA 59.430 50.000 0.00 0.00 36.78 2.10
1696 1915 3.008704 CGGGGGTCTTTCTCCTTTTCTAA 59.991 47.826 0.00 0.00 36.78 2.10
1697 1916 4.506095 CGGGGGTCTTTCTCCTTTTCTAAA 60.506 45.833 0.00 0.00 36.78 1.85
1698 1917 5.010933 GGGGGTCTTTCTCCTTTTCTAAAG 58.989 45.833 0.00 0.00 36.78 1.85
1699 1918 5.222068 GGGGGTCTTTCTCCTTTTCTAAAGA 60.222 44.000 0.89 0.00 36.78 2.52
1700 1919 6.304624 GGGGTCTTTCTCCTTTTCTAAAGAA 58.695 40.000 0.00 0.00 39.08 2.52
1701 1920 6.776116 GGGGTCTTTCTCCTTTTCTAAAGAAA 59.224 38.462 1.00 1.00 39.08 2.52
1746 1965 3.955551 TCAGGCCGTCACTATTATGTACA 59.044 43.478 0.00 0.00 0.00 2.90
1788 2007 8.689972 ACATGGTAGTTACTTAAGCGTACTAAT 58.310 33.333 1.29 0.00 0.00 1.73
1799 2022 5.557891 AAGCGTACTAATACTTGTCGTCT 57.442 39.130 0.00 0.00 0.00 4.18
1806 2029 7.007188 CGTACTAATACTTGTCGTCTTTGTCAG 59.993 40.741 0.00 0.00 0.00 3.51
1878 2101 6.274001 CAATTGATGGATGTACGTGTACTC 57.726 41.667 11.14 6.44 37.00 2.59
1883 2106 6.224584 TGATGGATGTACGTGTACTCAAAAA 58.775 36.000 11.14 0.00 37.00 1.94
1884 2107 6.876789 TGATGGATGTACGTGTACTCAAAAAT 59.123 34.615 11.14 0.00 37.00 1.82
2093 2316 1.320507 CCCTAGTCTTCTACGGAGGC 58.679 60.000 0.00 0.00 35.70 4.70
2206 2429 6.506538 AGACACATCTCTTAATTAGGCCAT 57.493 37.500 5.01 0.00 0.00 4.40
2208 2431 4.823989 ACACATCTCTTAATTAGGCCATGC 59.176 41.667 5.01 0.00 0.00 4.06
2209 2432 5.068636 CACATCTCTTAATTAGGCCATGCT 58.931 41.667 5.01 0.00 0.00 3.79
2211 2434 6.712095 CACATCTCTTAATTAGGCCATGCTAA 59.288 38.462 5.01 0.00 0.00 3.09
2212 2435 7.392673 CACATCTCTTAATTAGGCCATGCTAAT 59.607 37.037 5.01 0.00 0.00 1.73
2213 2436 7.946776 ACATCTCTTAATTAGGCCATGCTAATT 59.053 33.333 17.23 17.23 38.69 1.40
2214 2437 8.800332 CATCTCTTAATTAGGCCATGCTAATTT 58.200 33.333 17.90 7.68 37.12 1.82
2297 2520 7.826690 ACTAATATGGTTGTGTGAAATGTTCC 58.173 34.615 0.00 0.00 0.00 3.62
2405 2628 3.849951 CCCGACATGGACTCCCCG 61.850 72.222 0.00 0.00 42.00 5.73
2462 2685 1.950909 GAGATCGACGTCTCCTCCATT 59.049 52.381 14.70 0.00 38.94 3.16
2475 2698 0.107993 CTCCATTCTCGGCAGCTTCA 60.108 55.000 0.00 0.00 0.00 3.02
2480 2703 4.020617 CTCGGCAGCTTCACCCCA 62.021 66.667 0.00 0.00 0.00 4.96
2484 2707 4.666253 GCAGCTTCACCCCAGCCA 62.666 66.667 0.00 0.00 38.09 4.75
2555 2778 4.349503 ATGAACTGGCTGGCGGCA 62.350 61.111 21.68 12.58 44.01 5.69
2633 2856 2.954611 GGCACCGTTTTCTCTGCC 59.045 61.111 0.00 0.00 42.41 4.85
2809 3032 5.236047 GGAGAACCTTCTGATCAATTCATCG 59.764 44.000 0.00 0.00 37.73 3.84
2819 3042 1.592543 TCAATTCATCGGTTCATCGCG 59.407 47.619 0.00 0.00 0.00 5.87
2825 3050 4.168922 TCATCGGTTCATCGCGTATAAT 57.831 40.909 5.77 0.00 0.00 1.28
3024 3249 7.757941 TGTTTGTCCATCTGTTATGAAATGA 57.242 32.000 0.00 0.00 0.00 2.57
3060 3285 5.007234 TGTCTTTTTCACCGACAGTAACATG 59.993 40.000 0.00 0.00 33.15 3.21
3075 3300 6.149474 ACAGTAACATGACTTTAACATGAGGC 59.851 38.462 13.54 0.00 45.22 4.70
3078 3303 2.507407 TGACTTTAACATGAGGCCCC 57.493 50.000 0.00 0.00 0.00 5.80
3084 3309 1.692173 TAACATGAGGCCCCCGCTAC 61.692 60.000 0.00 0.00 34.44 3.58
3086 3311 2.690881 ATGAGGCCCCCGCTACAA 60.691 61.111 0.00 0.00 34.44 2.41
3088 3313 4.858680 GAGGCCCCCGCTACAAGC 62.859 72.222 0.00 0.00 38.02 4.01
3144 3381 2.869801 CGACAACTGTTTGGAGCAACTA 59.130 45.455 0.00 0.00 37.00 2.24
3160 3397 8.473219 TGGAGCAACTAGATCATATCATATCAC 58.527 37.037 0.00 0.00 33.23 3.06
3183 3420 3.743911 TGTCATTGTAACATGGACGACAC 59.256 43.478 0.00 0.00 0.00 3.67
3184 3421 3.124636 GTCATTGTAACATGGACGACACC 59.875 47.826 0.00 0.00 0.00 4.16
3187 3424 0.668096 GTAACATGGACGACACCGCA 60.668 55.000 0.00 0.00 39.95 5.69
3215 3452 1.471964 TTGCAACGCAAACGATGTTC 58.528 45.000 0.00 0.00 45.96 3.18
3216 3453 0.660488 TGCAACGCAAACGATGTTCT 59.340 45.000 0.00 0.00 43.33 3.01
3236 3474 0.390340 GGCTCTCATCGCAACACAGA 60.390 55.000 0.00 0.00 0.00 3.41
3239 3477 2.614779 CTCTCATCGCAACACAGACAT 58.385 47.619 0.00 0.00 0.00 3.06
3305 3543 4.593864 GCCCTCGGCCGATGTCTC 62.594 72.222 31.19 13.02 44.06 3.36
3306 3544 4.271816 CCCTCGGCCGATGTCTCG 62.272 72.222 31.19 15.95 44.62 4.04
3341 3579 1.814394 GACTTCATCACAGCATTGCCA 59.186 47.619 4.70 0.00 0.00 4.92
3354 3592 0.388907 ATTGCCAACATTGCAGACGC 60.389 50.000 0.00 0.00 40.35 5.19
3361 3599 3.511595 ATTGCAGACGCCGCCATG 61.512 61.111 0.00 0.00 37.32 3.66
3371 3609 3.041701 CCGCCATGCAACAACACT 58.958 55.556 0.00 0.00 0.00 3.55
3391 3629 1.079405 ACATTGTAGTCGCCCCGTG 60.079 57.895 0.00 0.00 0.00 4.94
3409 3647 1.333619 GTGCAACAACACCGAGATTGT 59.666 47.619 0.00 0.00 40.76 2.71
3412 3650 2.412847 GCAACAACACCGAGATTGTAGC 60.413 50.000 0.00 0.00 38.08 3.58
3430 3668 0.663153 GCCATCGCCACCTTAACATC 59.337 55.000 0.00 0.00 0.00 3.06
3440 3678 4.627741 GCCACCTTAACATCACCCTCATTA 60.628 45.833 0.00 0.00 0.00 1.90
3441 3679 5.694995 CCACCTTAACATCACCCTCATTAT 58.305 41.667 0.00 0.00 0.00 1.28
3463 3701 3.874873 GGCATTGCCCTTTTTCGC 58.125 55.556 17.28 0.00 44.06 4.70
3474 3712 1.664151 CCTTTTTCGCCGATGACTACC 59.336 52.381 0.00 0.00 0.00 3.18
3475 3713 2.618053 CTTTTTCGCCGATGACTACCT 58.382 47.619 0.00 0.00 0.00 3.08
3476 3714 2.754946 TTTTCGCCGATGACTACCTT 57.245 45.000 0.00 0.00 0.00 3.50
3477 3715 2.754946 TTTCGCCGATGACTACCTTT 57.245 45.000 0.00 0.00 0.00 3.11
3478 3716 2.004583 TTCGCCGATGACTACCTTTG 57.995 50.000 0.00 0.00 0.00 2.77
3479 3717 0.459585 TCGCCGATGACTACCTTTGC 60.460 55.000 0.00 0.00 0.00 3.68
3480 3718 1.752501 CGCCGATGACTACCTTTGCG 61.753 60.000 0.00 0.00 34.52 4.85
3526 3765 1.875813 CTCGCATCACTGGAGTCGC 60.876 63.158 0.00 0.00 0.00 5.19
3556 3803 1.025647 AGCACCGACGACCTCTCTAC 61.026 60.000 0.00 0.00 0.00 2.59
3558 3805 1.162698 CACCGACGACCTCTCTACAA 58.837 55.000 0.00 0.00 0.00 2.41
3561 3808 1.130749 CCGACGACCTCTCTACAACAG 59.869 57.143 0.00 0.00 0.00 3.16
3563 3810 0.522180 ACGACCTCTCTACAACAGCG 59.478 55.000 0.00 0.00 0.00 5.18
3583 3830 3.792736 TATGGTGCGACCCCAGCC 61.793 66.667 3.33 0.00 37.50 4.85
3596 3843 2.050714 CAGCCAGCTTGCAACACG 60.051 61.111 12.92 0.00 0.00 4.49
3597 3844 2.516930 AGCCAGCTTGCAACACGT 60.517 55.556 12.92 0.00 0.00 4.49
3613 3860 2.557805 GTGTGCGCCACATCACAG 59.442 61.111 19.85 0.00 46.32 3.66
3632 3879 0.808125 GCAGTGGTGTTGTTGTGACA 59.192 50.000 0.00 0.00 0.00 3.58
3651 3898 3.741476 GCAAGCTTGGAGCACCGG 61.741 66.667 27.10 0.00 45.56 5.28
3672 3919 1.676678 GACCTCCTATGCACCAGCGA 61.677 60.000 0.00 0.00 46.23 4.93
3681 3928 4.937620 CCTATGCACCAGCGATTATGTTAT 59.062 41.667 0.00 0.00 46.23 1.89
3688 3935 2.736721 CAGCGATTATGTTATGACCCCG 59.263 50.000 0.00 0.00 0.00 5.73
3706 3953 1.587054 GGTGAGCTCGTAGCACAGT 59.413 57.895 9.64 0.00 45.56 3.55
3760 4007 2.202623 GCAGTCACCGACCTAGCG 60.203 66.667 0.00 0.00 32.18 4.26
3782 4029 1.595311 ATGGTCATCCCCTTGTAGCA 58.405 50.000 0.00 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 5.719563 GGGGTTTATCCTCCATTTTGAAGAA 59.280 40.000 0.00 0.00 36.25 2.52
64 65 5.016245 AGGGGTTTATCCTCCATTTTGAAGA 59.984 40.000 0.00 0.00 37.41 2.87
75 76 4.022155 GTCATCGAGTAGGGGTTTATCCTC 60.022 50.000 0.00 0.00 35.92 3.71
77 78 3.640029 TGTCATCGAGTAGGGGTTTATCC 59.360 47.826 0.00 0.00 0.00 2.59
83 84 2.526888 TCTTGTCATCGAGTAGGGGT 57.473 50.000 0.00 0.00 0.00 4.95
84 85 2.959030 TCATCTTGTCATCGAGTAGGGG 59.041 50.000 0.00 0.00 0.00 4.79
90 91 4.633126 ACCAATTGTCATCTTGTCATCGAG 59.367 41.667 4.43 0.00 0.00 4.04
95 106 4.468713 TGGAACCAATTGTCATCTTGTCA 58.531 39.130 4.43 0.00 0.00 3.58
97 108 5.867903 TTTGGAACCAATTGTCATCTTGT 57.132 34.783 7.12 0.00 35.70 3.16
101 112 8.739972 AGTATACTTTTGGAACCAATTGTCATC 58.260 33.333 7.12 0.00 35.70 2.92
114 125 6.264744 CCATCGAGTAGGAGTATACTTTTGGA 59.735 42.308 6.88 0.00 36.13 3.53
167 178 7.116736 AGAAAGTGGAAACAAGGTAAGAGAAA 58.883 34.615 0.00 0.00 46.06 2.52
181 192 6.042143 GTCAAAAGATGCAAGAAAGTGGAAA 58.958 36.000 0.00 0.00 0.00 3.13
191 202 8.653338 CCAATTAAGAATGTCAAAAGATGCAAG 58.347 33.333 0.00 0.00 0.00 4.01
243 254 0.677842 ATTATGCCCTCCCGACGTAC 59.322 55.000 0.00 0.00 0.00 3.67
244 255 0.963962 GATTATGCCCTCCCGACGTA 59.036 55.000 0.00 0.00 0.00 3.57
245 256 1.046472 TGATTATGCCCTCCCGACGT 61.046 55.000 0.00 0.00 0.00 4.34
246 257 0.105964 TTGATTATGCCCTCCCGACG 59.894 55.000 0.00 0.00 0.00 5.12
406 440 2.097635 TCGGCGCTACACGTACGTA 61.098 57.895 22.34 5.54 46.11 3.57
407 441 3.422303 TCGGCGCTACACGTACGT 61.422 61.111 16.72 16.72 46.11 3.57
408 442 2.941013 GTCGGCGCTACACGTACG 60.941 66.667 15.01 15.01 46.11 3.67
409 443 2.941013 CGTCGGCGCTACACGTAC 60.941 66.667 7.64 2.19 46.11 3.67
438 472 1.063006 CGATTGGCACGCAATCAGG 59.937 57.895 12.68 0.00 38.57 3.86
464 498 3.648339 TTACGACACTGTACTTGGGTC 57.352 47.619 10.45 10.45 0.00 4.46
467 501 4.232221 ACGAATTACGACACTGTACTTGG 58.768 43.478 0.00 0.00 45.77 3.61
675 730 0.908180 GGGAAAAGGTCGGAGGAGGA 60.908 60.000 0.00 0.00 0.00 3.71
743 798 2.280524 TCTCAACAACCACGGCCG 60.281 61.111 26.86 26.86 0.00 6.13
744 799 2.258726 GGTCTCAACAACCACGGCC 61.259 63.158 0.00 0.00 36.75 6.13
773 828 5.171476 TCTTGTTGCACATACTTCTAGAGC 58.829 41.667 0.00 0.00 0.00 4.09
787 842 7.041372 GGAGTAATTAAAGTCACTCTTGTTGCA 60.041 37.037 4.30 0.00 37.99 4.08
898 953 1.742140 CTCAGCTCAGCAGGCAGTG 60.742 63.158 0.00 0.00 0.00 3.66
943 998 2.184322 CGGCCGACTGCACAGTAT 59.816 61.111 24.07 0.00 42.66 2.12
986 1041 1.342819 CCTCCATCCTGACCTTCGATC 59.657 57.143 0.00 0.00 0.00 3.69
1169 1231 2.878935 AGGAACTAGCTCGAACCTCGAA 60.879 50.000 0.00 0.00 43.65 3.71
1170 1232 1.339824 AGGAACTAGCTCGAACCTCGA 60.340 52.381 0.00 0.00 42.41 4.04
1171 1233 1.096416 AGGAACTAGCTCGAACCTCG 58.904 55.000 0.00 0.00 38.08 4.63
1172 1234 2.159212 GGAAGGAACTAGCTCGAACCTC 60.159 54.545 0.00 0.00 38.49 3.85
1173 1235 1.826096 GGAAGGAACTAGCTCGAACCT 59.174 52.381 0.00 0.00 38.49 3.50
1174 1236 1.134759 GGGAAGGAACTAGCTCGAACC 60.135 57.143 0.00 0.00 38.49 3.62
1175 1237 1.469423 CGGGAAGGAACTAGCTCGAAC 60.469 57.143 0.00 0.00 38.81 3.95
1176 1238 0.815734 CGGGAAGGAACTAGCTCGAA 59.184 55.000 0.00 0.00 38.81 3.71
1178 1240 0.531200 AACGGGAAGGAACTAGCTCG 59.469 55.000 0.00 0.00 41.57 5.03
1179 1241 2.007547 GCAACGGGAAGGAACTAGCTC 61.008 57.143 0.00 0.00 38.49 4.09
1180 1242 0.036294 GCAACGGGAAGGAACTAGCT 60.036 55.000 0.00 0.00 38.49 3.32
1181 1243 0.321298 TGCAACGGGAAGGAACTAGC 60.321 55.000 0.00 0.00 38.49 3.42
1182 1244 1.270625 TGTGCAACGGGAAGGAACTAG 60.271 52.381 0.00 0.00 42.39 2.57
1183 1245 0.759959 TGTGCAACGGGAAGGAACTA 59.240 50.000 0.00 0.00 42.39 2.24
1184 1246 0.110486 ATGTGCAACGGGAAGGAACT 59.890 50.000 0.00 0.00 42.39 3.01
1185 1247 0.958822 AATGTGCAACGGGAAGGAAC 59.041 50.000 0.00 0.00 42.39 3.62
1186 1248 1.243902 GAATGTGCAACGGGAAGGAA 58.756 50.000 0.00 0.00 42.39 3.36
1217 1279 3.754965 TCAAATCAGGTGTCTTTCCCAG 58.245 45.455 0.00 0.00 0.00 4.45
1218 1280 3.874383 TCAAATCAGGTGTCTTTCCCA 57.126 42.857 0.00 0.00 0.00 4.37
1227 1410 5.051816 ACAAGCACAAATTCAAATCAGGTG 58.948 37.500 0.00 0.00 0.00 4.00
1300 1517 1.165270 GCAATTGGCACTAGTTCCGT 58.835 50.000 7.72 0.00 43.97 4.69
1325 1542 3.003480 GCCACAAGTAGACAAGATGGTC 58.997 50.000 0.00 0.00 38.08 4.02
1336 1553 3.425162 AAAGAGGGAAGCCACAAGTAG 57.575 47.619 0.00 0.00 0.00 2.57
1396 1615 2.643551 CCAGGACGGTGCATCTTAAAT 58.356 47.619 1.61 0.00 0.00 1.40
1397 1616 1.948611 GCCAGGACGGTGCATCTTAAA 60.949 52.381 1.61 0.00 36.97 1.52
1398 1617 0.392461 GCCAGGACGGTGCATCTTAA 60.392 55.000 1.61 0.00 36.97 1.85
1399 1618 1.220749 GCCAGGACGGTGCATCTTA 59.779 57.895 1.61 0.00 36.97 2.10
1400 1619 2.045926 GCCAGGACGGTGCATCTT 60.046 61.111 1.61 0.00 36.97 2.40
1401 1620 1.264749 TAAGCCAGGACGGTGCATCT 61.265 55.000 1.61 0.00 36.97 2.90
1402 1621 0.811616 CTAAGCCAGGACGGTGCATC 60.812 60.000 1.61 0.00 36.97 3.91
1403 1622 1.221840 CTAAGCCAGGACGGTGCAT 59.778 57.895 1.61 0.00 36.97 3.96
1404 1623 2.662596 CTAAGCCAGGACGGTGCA 59.337 61.111 1.61 0.00 36.97 4.57
1416 1635 4.143333 TCCGGCGCACTCCTAAGC 62.143 66.667 10.83 0.00 0.00 3.09
1417 1636 2.202756 GTCCGGCGCACTCCTAAG 60.203 66.667 10.83 0.00 0.00 2.18
1418 1637 2.678934 AGTCCGGCGCACTCCTAA 60.679 61.111 10.83 0.00 0.00 2.69
1419 1638 3.449227 CAGTCCGGCGCACTCCTA 61.449 66.667 10.83 0.00 0.00 2.94
1446 1665 4.910585 GACGCCTGCCGGGTATGG 62.911 72.222 2.18 0.00 42.52 2.74
1447 1666 4.910585 GGACGCCTGCCGGGTATG 62.911 72.222 2.18 0.00 42.52 2.39
1457 1676 3.637273 GTCCCAACCAGGACGCCT 61.637 66.667 0.00 0.00 46.57 5.52
1473 1692 4.949121 ACCTAACATCTAAGACCTGAGGT 58.051 43.478 2.41 2.41 39.44 3.85
1474 1693 5.941555 AACCTAACATCTAAGACCTGAGG 57.058 43.478 0.00 0.00 0.00 3.86
1475 1694 6.109359 CCAAACCTAACATCTAAGACCTGAG 58.891 44.000 0.00 0.00 0.00 3.35
1476 1695 5.570844 GCCAAACCTAACATCTAAGACCTGA 60.571 44.000 0.00 0.00 0.00 3.86
1477 1696 4.636206 GCCAAACCTAACATCTAAGACCTG 59.364 45.833 0.00 0.00 0.00 4.00
1478 1697 4.536489 AGCCAAACCTAACATCTAAGACCT 59.464 41.667 0.00 0.00 0.00 3.85
1479 1698 4.636206 CAGCCAAACCTAACATCTAAGACC 59.364 45.833 0.00 0.00 0.00 3.85
1480 1699 4.095036 GCAGCCAAACCTAACATCTAAGAC 59.905 45.833 0.00 0.00 0.00 3.01
1481 1700 4.261801 GCAGCCAAACCTAACATCTAAGA 58.738 43.478 0.00 0.00 0.00 2.10
1482 1701 3.063997 CGCAGCCAAACCTAACATCTAAG 59.936 47.826 0.00 0.00 0.00 2.18
1483 1702 3.006940 CGCAGCCAAACCTAACATCTAA 58.993 45.455 0.00 0.00 0.00 2.10
1484 1703 2.235155 TCGCAGCCAAACCTAACATCTA 59.765 45.455 0.00 0.00 0.00 1.98
1485 1704 1.003118 TCGCAGCCAAACCTAACATCT 59.997 47.619 0.00 0.00 0.00 2.90
1486 1705 1.398390 CTCGCAGCCAAACCTAACATC 59.602 52.381 0.00 0.00 0.00 3.06
1487 1706 1.453155 CTCGCAGCCAAACCTAACAT 58.547 50.000 0.00 0.00 0.00 2.71
1488 1707 0.605319 CCTCGCAGCCAAACCTAACA 60.605 55.000 0.00 0.00 0.00 2.41
1489 1708 0.605589 ACCTCGCAGCCAAACCTAAC 60.606 55.000 0.00 0.00 0.00 2.34
1490 1709 0.321298 GACCTCGCAGCCAAACCTAA 60.321 55.000 0.00 0.00 0.00 2.69
1491 1710 1.192146 AGACCTCGCAGCCAAACCTA 61.192 55.000 0.00 0.00 0.00 3.08
1492 1711 2.032681 GACCTCGCAGCCAAACCT 59.967 61.111 0.00 0.00 0.00 3.50
1493 1712 2.032681 AGACCTCGCAGCCAAACC 59.967 61.111 0.00 0.00 0.00 3.27
1494 1713 1.166531 AACAGACCTCGCAGCCAAAC 61.167 55.000 0.00 0.00 0.00 2.93
1495 1714 0.465460 AAACAGACCTCGCAGCCAAA 60.465 50.000 0.00 0.00 0.00 3.28
1496 1715 1.148273 AAACAGACCTCGCAGCCAA 59.852 52.632 0.00 0.00 0.00 4.52
1497 1716 1.597854 CAAACAGACCTCGCAGCCA 60.598 57.895 0.00 0.00 0.00 4.75
1498 1717 2.328099 CCAAACAGACCTCGCAGCC 61.328 63.158 0.00 0.00 0.00 4.85
1499 1718 0.320421 TACCAAACAGACCTCGCAGC 60.320 55.000 0.00 0.00 0.00 5.25
1500 1719 2.386661 ATACCAAACAGACCTCGCAG 57.613 50.000 0.00 0.00 0.00 5.18
1501 1720 2.851263 AATACCAAACAGACCTCGCA 57.149 45.000 0.00 0.00 0.00 5.10
1502 1721 3.195661 CCTAATACCAAACAGACCTCGC 58.804 50.000 0.00 0.00 0.00 5.03
1503 1722 3.195661 GCCTAATACCAAACAGACCTCG 58.804 50.000 0.00 0.00 0.00 4.63
1504 1723 3.542648 GGCCTAATACCAAACAGACCTC 58.457 50.000 0.00 0.00 0.00 3.85
1505 1724 2.241430 GGGCCTAATACCAAACAGACCT 59.759 50.000 0.84 0.00 0.00 3.85
1506 1725 2.025699 TGGGCCTAATACCAAACAGACC 60.026 50.000 4.53 0.00 32.89 3.85
1507 1726 3.054655 TCTGGGCCTAATACCAAACAGAC 60.055 47.826 4.53 0.00 36.09 3.51
1508 1727 3.054655 GTCTGGGCCTAATACCAAACAGA 60.055 47.826 4.53 0.00 36.09 3.41
1509 1728 3.054361 AGTCTGGGCCTAATACCAAACAG 60.054 47.826 4.53 0.00 36.09 3.16
1510 1729 2.916934 AGTCTGGGCCTAATACCAAACA 59.083 45.455 4.53 0.00 36.09 2.83
1511 1730 3.646736 AGTCTGGGCCTAATACCAAAC 57.353 47.619 4.53 0.00 36.09 2.93
1512 1731 4.972568 TGATAGTCTGGGCCTAATACCAAA 59.027 41.667 4.53 0.00 36.09 3.28
1513 1732 4.562767 TGATAGTCTGGGCCTAATACCAA 58.437 43.478 4.53 0.00 36.09 3.67
1514 1733 4.160329 CTGATAGTCTGGGCCTAATACCA 58.840 47.826 4.53 0.00 35.05 3.25
1515 1734 3.055747 GCTGATAGTCTGGGCCTAATACC 60.056 52.174 4.53 0.00 0.00 2.73
1516 1735 3.578716 TGCTGATAGTCTGGGCCTAATAC 59.421 47.826 4.53 0.00 0.00 1.89
1517 1736 3.856900 TGCTGATAGTCTGGGCCTAATA 58.143 45.455 4.53 0.00 0.00 0.98
1518 1737 2.694397 TGCTGATAGTCTGGGCCTAAT 58.306 47.619 4.53 0.00 0.00 1.73
1519 1738 2.174685 TGCTGATAGTCTGGGCCTAA 57.825 50.000 4.53 0.00 0.00 2.69
1520 1739 2.251818 GATGCTGATAGTCTGGGCCTA 58.748 52.381 4.53 0.00 0.00 3.93
1521 1740 1.055040 GATGCTGATAGTCTGGGCCT 58.945 55.000 4.53 0.00 0.00 5.19
1522 1741 0.036022 GGATGCTGATAGTCTGGGCC 59.964 60.000 0.00 0.00 0.00 5.80
1523 1742 0.036022 GGGATGCTGATAGTCTGGGC 59.964 60.000 0.00 0.00 0.00 5.36
1524 1743 1.727062 AGGGATGCTGATAGTCTGGG 58.273 55.000 0.00 0.00 0.00 4.45
1525 1744 3.234353 TGTAGGGATGCTGATAGTCTGG 58.766 50.000 0.00 0.00 0.00 3.86
1526 1745 4.525874 TGATGTAGGGATGCTGATAGTCTG 59.474 45.833 0.00 0.00 0.00 3.51
1527 1746 4.745351 TGATGTAGGGATGCTGATAGTCT 58.255 43.478 0.00 0.00 0.00 3.24
1528 1747 5.011533 AGTTGATGTAGGGATGCTGATAGTC 59.988 44.000 0.00 0.00 0.00 2.59
1529 1748 4.904251 AGTTGATGTAGGGATGCTGATAGT 59.096 41.667 0.00 0.00 0.00 2.12
1530 1749 5.236282 CAGTTGATGTAGGGATGCTGATAG 58.764 45.833 0.00 0.00 0.00 2.08
1531 1750 4.040829 CCAGTTGATGTAGGGATGCTGATA 59.959 45.833 0.00 0.00 0.00 2.15
1532 1751 3.181447 CCAGTTGATGTAGGGATGCTGAT 60.181 47.826 0.00 0.00 0.00 2.90
1533 1752 2.171237 CCAGTTGATGTAGGGATGCTGA 59.829 50.000 0.00 0.00 0.00 4.26
1534 1753 2.171237 TCCAGTTGATGTAGGGATGCTG 59.829 50.000 0.00 0.00 0.00 4.41
1535 1754 2.481441 TCCAGTTGATGTAGGGATGCT 58.519 47.619 0.00 0.00 0.00 3.79
1536 1755 3.498774 ATCCAGTTGATGTAGGGATGC 57.501 47.619 0.00 0.00 37.00 3.91
1537 1756 4.840680 TCCTATCCAGTTGATGTAGGGATG 59.159 45.833 0.00 0.00 38.72 3.51
1538 1757 5.090139 CTCCTATCCAGTTGATGTAGGGAT 58.910 45.833 0.00 0.00 41.13 3.85
1539 1758 4.078571 ACTCCTATCCAGTTGATGTAGGGA 60.079 45.833 0.00 0.00 32.19 4.20
1540 1759 4.227197 ACTCCTATCCAGTTGATGTAGGG 58.773 47.826 0.00 0.00 32.19 3.53
1541 1760 5.047660 GCTACTCCTATCCAGTTGATGTAGG 60.048 48.000 0.00 0.00 34.76 3.18
1542 1761 5.335269 CGCTACTCCTATCCAGTTGATGTAG 60.335 48.000 0.00 0.00 34.76 2.74
1543 1762 4.519350 CGCTACTCCTATCCAGTTGATGTA 59.481 45.833 0.00 0.00 34.76 2.29
1544 1763 3.319405 CGCTACTCCTATCCAGTTGATGT 59.681 47.826 0.00 0.00 34.76 3.06
1545 1764 3.570125 TCGCTACTCCTATCCAGTTGATG 59.430 47.826 0.00 0.00 34.76 3.07
1546 1765 3.570550 GTCGCTACTCCTATCCAGTTGAT 59.429 47.826 0.00 0.00 37.49 2.57
1547 1766 2.950309 GTCGCTACTCCTATCCAGTTGA 59.050 50.000 0.00 0.00 0.00 3.18
1548 1767 2.688446 TGTCGCTACTCCTATCCAGTTG 59.312 50.000 0.00 0.00 0.00 3.16
1549 1768 2.952978 CTGTCGCTACTCCTATCCAGTT 59.047 50.000 0.00 0.00 0.00 3.16
1550 1769 2.172930 TCTGTCGCTACTCCTATCCAGT 59.827 50.000 0.00 0.00 0.00 4.00
1551 1770 2.852449 TCTGTCGCTACTCCTATCCAG 58.148 52.381 0.00 0.00 0.00 3.86
1552 1771 3.149981 CATCTGTCGCTACTCCTATCCA 58.850 50.000 0.00 0.00 0.00 3.41
1553 1772 3.150767 ACATCTGTCGCTACTCCTATCC 58.849 50.000 0.00 0.00 0.00 2.59
1554 1773 4.541779 CAACATCTGTCGCTACTCCTATC 58.458 47.826 0.00 0.00 0.00 2.08
1555 1774 3.243569 GCAACATCTGTCGCTACTCCTAT 60.244 47.826 0.00 0.00 0.00 2.57
1556 1775 2.099263 GCAACATCTGTCGCTACTCCTA 59.901 50.000 0.00 0.00 0.00 2.94
1557 1776 1.134965 GCAACATCTGTCGCTACTCCT 60.135 52.381 0.00 0.00 0.00 3.69
1558 1777 1.281899 GCAACATCTGTCGCTACTCC 58.718 55.000 0.00 0.00 0.00 3.85
1559 1778 1.134965 AGGCAACATCTGTCGCTACTC 60.135 52.381 0.00 0.00 41.41 2.59
1560 1779 0.898320 AGGCAACATCTGTCGCTACT 59.102 50.000 0.00 0.00 41.41 2.57
1561 1780 2.099263 TCTAGGCAACATCTGTCGCTAC 59.901 50.000 0.00 0.00 41.41 3.58
1562 1781 2.099263 GTCTAGGCAACATCTGTCGCTA 59.901 50.000 0.00 0.00 41.41 4.26
1563 1782 1.134965 GTCTAGGCAACATCTGTCGCT 60.135 52.381 0.00 0.00 41.41 4.93
1564 1783 1.281899 GTCTAGGCAACATCTGTCGC 58.718 55.000 0.00 0.00 41.41 5.19
1565 1784 1.550065 CGTCTAGGCAACATCTGTCG 58.450 55.000 0.00 0.00 41.41 4.35
1566 1785 1.204941 ACCGTCTAGGCAACATCTGTC 59.795 52.381 0.00 0.00 46.52 3.51
1567 1786 1.066858 CACCGTCTAGGCAACATCTGT 60.067 52.381 0.00 0.00 46.52 3.41
1568 1787 1.645034 CACCGTCTAGGCAACATCTG 58.355 55.000 0.00 0.00 46.52 2.90
1569 1788 0.537188 CCACCGTCTAGGCAACATCT 59.463 55.000 0.00 0.00 46.52 2.90
1570 1789 3.065575 CCACCGTCTAGGCAACATC 57.934 57.895 0.00 0.00 46.52 3.06
1577 1796 8.603416 ATAGTAAGACTAAAGCCACCGTCTAGG 61.603 44.444 0.00 0.00 39.11 3.02
1578 1797 3.870633 AAGACTAAAGCCACCGTCTAG 57.129 47.619 0.00 0.00 35.82 2.43
1579 1798 4.338879 AGTAAGACTAAAGCCACCGTCTA 58.661 43.478 0.00 0.00 35.82 2.59
1580 1799 3.163467 AGTAAGACTAAAGCCACCGTCT 58.837 45.455 0.00 0.00 38.29 4.18
1581 1800 3.589495 AGTAAGACTAAAGCCACCGTC 57.411 47.619 0.00 0.00 0.00 4.79
1582 1801 5.046807 ACAATAGTAAGACTAAAGCCACCGT 60.047 40.000 0.00 0.00 33.89 4.83
1583 1802 5.416947 ACAATAGTAAGACTAAAGCCACCG 58.583 41.667 0.00 0.00 33.89 4.94
1584 1803 8.202137 TCATACAATAGTAAGACTAAAGCCACC 58.798 37.037 0.00 0.00 33.89 4.61
1585 1804 9.765795 ATCATACAATAGTAAGACTAAAGCCAC 57.234 33.333 0.00 0.00 33.89 5.01
1602 1821 9.077885 ACACAAGACCTTACAAAATCATACAAT 57.922 29.630 0.00 0.00 0.00 2.71
1603 1822 8.349245 CACACAAGACCTTACAAAATCATACAA 58.651 33.333 0.00 0.00 0.00 2.41
1604 1823 7.717436 TCACACAAGACCTTACAAAATCATACA 59.283 33.333 0.00 0.00 0.00 2.29
1605 1824 8.094798 TCACACAAGACCTTACAAAATCATAC 57.905 34.615 0.00 0.00 0.00 2.39
1606 1825 8.684386 TTCACACAAGACCTTACAAAATCATA 57.316 30.769 0.00 0.00 0.00 2.15
1607 1826 7.581213 TTCACACAAGACCTTACAAAATCAT 57.419 32.000 0.00 0.00 0.00 2.45
1608 1827 7.581213 ATTCACACAAGACCTTACAAAATCA 57.419 32.000 0.00 0.00 0.00 2.57
1623 1842 9.853555 CAGCCACTTTATTAAATATTCACACAA 57.146 29.630 0.00 0.00 0.00 3.33
1624 1843 7.973388 GCAGCCACTTTATTAAATATTCACACA 59.027 33.333 0.00 0.00 0.00 3.72
1625 1844 7.973388 TGCAGCCACTTTATTAAATATTCACAC 59.027 33.333 0.00 0.00 0.00 3.82
1626 1845 8.060931 TGCAGCCACTTTATTAAATATTCACA 57.939 30.769 0.00 0.00 0.00 3.58
1627 1846 8.971321 CATGCAGCCACTTTATTAAATATTCAC 58.029 33.333 0.00 0.00 0.00 3.18
1628 1847 7.652909 GCATGCAGCCACTTTATTAAATATTCA 59.347 33.333 14.21 0.00 37.23 2.57
1629 1848 7.652909 TGCATGCAGCCACTTTATTAAATATTC 59.347 33.333 18.46 0.00 44.83 1.75
1630 1849 7.499292 TGCATGCAGCCACTTTATTAAATATT 58.501 30.769 18.46 0.00 44.83 1.28
1631 1850 7.053316 TGCATGCAGCCACTTTATTAAATAT 57.947 32.000 18.46 0.00 44.83 1.28
1632 1851 6.462552 TGCATGCAGCCACTTTATTAAATA 57.537 33.333 18.46 0.00 44.83 1.40
1633 1852 5.341872 TGCATGCAGCCACTTTATTAAAT 57.658 34.783 18.46 0.00 44.83 1.40
1634 1853 4.797800 TGCATGCAGCCACTTTATTAAA 57.202 36.364 18.46 0.00 44.83 1.52
1635 1854 4.497842 CGATGCATGCAGCCACTTTATTAA 60.498 41.667 28.76 0.00 44.83 1.40
1636 1855 3.003585 CGATGCATGCAGCCACTTTATTA 59.996 43.478 28.76 0.00 44.83 0.98
1637 1856 2.223641 CGATGCATGCAGCCACTTTATT 60.224 45.455 28.76 6.59 44.83 1.40
1638 1857 1.335810 CGATGCATGCAGCCACTTTAT 59.664 47.619 28.76 7.39 44.83 1.40
1639 1858 0.734309 CGATGCATGCAGCCACTTTA 59.266 50.000 28.76 0.09 44.83 1.85
1640 1859 1.246056 ACGATGCATGCAGCCACTTT 61.246 50.000 28.76 9.02 44.83 2.66
1641 1860 1.651240 GACGATGCATGCAGCCACTT 61.651 55.000 28.76 9.83 44.83 3.16
1642 1861 2.045634 ACGATGCATGCAGCCACT 60.046 55.556 28.76 10.64 44.83 4.00
1643 1862 2.406401 GACGATGCATGCAGCCAC 59.594 61.111 28.76 18.86 44.83 5.01
1644 1863 2.825387 GGACGATGCATGCAGCCA 60.825 61.111 28.76 3.84 44.83 4.75
1645 1864 3.945434 CGGACGATGCATGCAGCC 61.945 66.667 28.76 22.07 44.83 4.85
1646 1865 3.945434 CCGGACGATGCATGCAGC 61.945 66.667 25.69 25.69 45.96 5.25
1647 1866 1.596203 ATCCGGACGATGCATGCAG 60.596 57.895 26.69 15.79 0.00 4.41
1648 1867 1.888638 CATCCGGACGATGCATGCA 60.889 57.895 25.04 25.04 41.99 3.96
1649 1868 2.941333 CATCCGGACGATGCATGC 59.059 61.111 6.12 11.82 41.99 4.06
1655 1874 3.133014 CCTCTGCATCCGGACGAT 58.867 61.111 6.12 0.00 0.00 3.73
1656 1875 3.838271 GCCTCTGCATCCGGACGA 61.838 66.667 6.12 0.00 37.47 4.20
1657 1876 4.899239 GGCCTCTGCATCCGGACG 62.899 72.222 6.12 0.00 40.13 4.79
1658 1877 4.899239 CGGCCTCTGCATCCGGAC 62.899 72.222 6.12 0.00 39.52 4.79
1667 1886 3.330720 AAAGACCCCCGGCCTCTG 61.331 66.667 0.00 0.00 0.00 3.35
1668 1887 3.009714 GAAAGACCCCCGGCCTCT 61.010 66.667 0.00 0.00 0.00 3.69
1669 1888 3.009714 AGAAAGACCCCCGGCCTC 61.010 66.667 0.00 0.00 0.00 4.70
1670 1889 3.009714 GAGAAAGACCCCCGGCCT 61.010 66.667 0.00 0.00 0.00 5.19
1671 1890 4.111053 GGAGAAAGACCCCCGGCC 62.111 72.222 0.00 0.00 0.00 6.13
1672 1891 2.138453 AAAGGAGAAAGACCCCCGGC 62.138 60.000 0.00 0.00 0.00 6.13
1673 1892 0.404426 AAAAGGAGAAAGACCCCCGG 59.596 55.000 0.00 0.00 0.00 5.73
1674 1893 1.351350 AGAAAAGGAGAAAGACCCCCG 59.649 52.381 0.00 0.00 0.00 5.73
1675 1894 4.652679 TTAGAAAAGGAGAAAGACCCCC 57.347 45.455 0.00 0.00 0.00 5.40
1676 1895 5.877491 TCTTTAGAAAAGGAGAAAGACCCC 58.123 41.667 0.00 0.00 33.97 4.95
1677 1896 7.818997 TTTCTTTAGAAAAGGAGAAAGACCC 57.181 36.000 2.54 0.00 40.68 4.46
1702 1921 9.060347 CCTGAATATGTGCATCTTAAGTAACAT 57.940 33.333 1.63 10.32 33.18 2.71
1703 1922 7.012327 GCCTGAATATGTGCATCTTAAGTAACA 59.988 37.037 1.63 3.92 0.00 2.41
1704 1923 7.355778 GCCTGAATATGTGCATCTTAAGTAAC 58.644 38.462 1.63 0.00 0.00 2.50
1705 1924 6.486657 GGCCTGAATATGTGCATCTTAAGTAA 59.513 38.462 1.63 0.00 0.00 2.24
1706 1925 5.997746 GGCCTGAATATGTGCATCTTAAGTA 59.002 40.000 1.63 0.00 0.00 2.24
1707 1926 4.823989 GGCCTGAATATGTGCATCTTAAGT 59.176 41.667 1.63 0.00 0.00 2.24
1708 1927 4.083643 CGGCCTGAATATGTGCATCTTAAG 60.084 45.833 0.00 0.00 0.00 1.85
1709 1928 3.814842 CGGCCTGAATATGTGCATCTTAA 59.185 43.478 0.00 0.00 0.00 1.85
1713 1932 1.532868 GACGGCCTGAATATGTGCATC 59.467 52.381 0.00 0.00 0.00 3.91
1746 1965 9.476928 AACTACCATGTAAATCTAGAGTAGTGT 57.523 33.333 14.41 6.06 39.17 3.55
1788 2007 4.142337 TGACACTGACAAAGACGACAAGTA 60.142 41.667 0.00 0.00 0.00 2.24
1799 2022 2.441410 TGCCAACTTGACACTGACAAA 58.559 42.857 0.00 0.00 0.00 2.83
1806 2029 1.196808 CGGTGTATGCCAACTTGACAC 59.803 52.381 3.83 3.83 39.72 3.67
1852 2075 1.939934 ACGTACATCCATCAATTGGCG 59.060 47.619 5.42 0.00 46.01 5.69
1892 2115 0.313987 TGCCTGCAGACGTATATCCG 59.686 55.000 17.39 0.00 0.00 4.18
1897 2120 0.036010 AGCTTTGCCTGCAGACGTAT 60.036 50.000 17.39 0.00 0.00 3.06
2206 2429 9.973450 TTTTATAACAAGTTGCAGAAATTAGCA 57.027 25.926 1.81 0.00 39.32 3.49
2297 2520 4.097286 TCCTTCGAAAACCAAAGACAAAGG 59.903 41.667 0.00 0.00 33.61 3.11
2462 2685 3.706373 GGGGTGAAGCTGCCGAGA 61.706 66.667 0.00 0.00 0.00 4.04
2633 2856 2.676121 TTCTGCATGGCGGGGTTG 60.676 61.111 0.00 0.00 35.34 3.77
2809 3032 6.774354 TTTCCTTATTATACGCGATGAACC 57.226 37.500 15.93 0.00 0.00 3.62
3060 3285 1.763968 GGGGGCCTCATGTTAAAGTC 58.236 55.000 4.16 0.00 0.00 3.01
3084 3309 0.820891 AATATCAGCCGGCCAGCTTG 60.821 55.000 26.15 15.25 42.61 4.01
3086 3311 0.106519 AAAATATCAGCCGGCCAGCT 60.107 50.000 26.15 7.95 46.45 4.24
3088 3313 0.031178 GCAAAATATCAGCCGGCCAG 59.969 55.000 26.15 17.31 0.00 4.85
3160 3397 3.993736 TGTCGTCCATGTTACAATGACAG 59.006 43.478 14.74 9.30 31.99 3.51
3169 3406 0.389296 CTGCGGTGTCGTCCATGTTA 60.389 55.000 0.00 0.00 38.89 2.41
3183 3420 2.628696 TTGCAATGGCTGACTGCGG 61.629 57.895 0.00 0.00 44.05 5.69
3184 3421 1.443194 GTTGCAATGGCTGACTGCG 60.443 57.895 0.59 0.00 44.05 5.18
3187 3424 1.454572 TTGCGTTGCAATGGCTGACT 61.455 50.000 19.93 0.00 43.99 3.41
3206 3443 2.898705 GATGAGAGCCAGAACATCGTT 58.101 47.619 0.00 0.00 31.74 3.85
3215 3452 0.671472 TGTGTTGCGATGAGAGCCAG 60.671 55.000 0.00 0.00 0.00 4.85
3216 3453 0.671472 CTGTGTTGCGATGAGAGCCA 60.671 55.000 0.00 0.00 0.00 4.75
3298 3536 3.999051 GCGTAGTGCCGAGACATC 58.001 61.111 0.00 0.00 37.76 3.06
3307 3545 3.621892 AAGTCCGACGGCGTAGTGC 62.622 63.158 14.74 7.82 45.38 4.40
3308 3546 1.513586 GAAGTCCGACGGCGTAGTG 60.514 63.158 14.74 7.42 35.23 2.74
3309 3547 1.310933 ATGAAGTCCGACGGCGTAGT 61.311 55.000 14.74 0.00 35.23 2.73
3310 3548 0.591741 GATGAAGTCCGACGGCGTAG 60.592 60.000 14.74 13.99 35.23 3.51
3311 3549 1.307355 TGATGAAGTCCGACGGCGTA 61.307 55.000 14.74 0.00 35.23 4.42
3312 3550 2.181021 GATGAAGTCCGACGGCGT 59.819 61.111 14.65 14.65 35.23 5.68
3316 3554 0.388520 TGCTGTGATGAAGTCCGACG 60.389 55.000 0.00 0.00 0.00 5.12
3341 3579 3.737172 GGCGGCGTCTGCAATGTT 61.737 61.111 9.37 0.00 45.35 2.71
3352 3590 4.340019 TGTTGTTGCATGGCGGCG 62.340 61.111 0.51 0.51 36.28 6.46
3354 3592 1.372004 CAGTGTTGTTGCATGGCGG 60.372 57.895 0.00 0.00 0.00 6.13
3361 3599 4.527564 GACTACAATGTCAGTGTTGTTGC 58.472 43.478 18.80 6.48 39.18 4.17
3371 3609 1.216977 CGGGGCGACTACAATGTCA 59.783 57.895 0.00 0.00 36.82 3.58
3391 3629 2.412847 GCTACAATCTCGGTGTTGTTGC 60.413 50.000 14.03 14.03 44.81 4.17
3409 3647 0.906066 TGTTAAGGTGGCGATGGCTA 59.094 50.000 0.00 0.00 39.81 3.93
3412 3650 1.670811 GTGATGTTAAGGTGGCGATGG 59.329 52.381 0.00 0.00 0.00 3.51
3430 3668 4.261741 GCAATGCCAACTATAATGAGGGTG 60.262 45.833 0.00 0.00 0.00 4.61
3463 3701 1.429148 GCCGCAAAGGTAGTCATCGG 61.429 60.000 0.00 0.00 43.70 4.18
3474 3712 2.824041 ATACCCGCTGCCGCAAAG 60.824 61.111 0.00 0.00 35.30 2.77
3475 3713 3.130819 CATACCCGCTGCCGCAAA 61.131 61.111 0.00 0.00 35.30 3.68
3476 3714 3.910914 AACATACCCGCTGCCGCAA 62.911 57.895 0.00 0.00 35.30 4.85
3477 3715 4.402528 AACATACCCGCTGCCGCA 62.403 61.111 0.00 0.00 35.30 5.69
3478 3716 3.876198 CAACATACCCGCTGCCGC 61.876 66.667 0.00 0.00 0.00 6.53
3479 3717 2.435938 ACAACATACCCGCTGCCG 60.436 61.111 0.00 0.00 0.00 5.69
3480 3718 1.376683 TCACAACATACCCGCTGCC 60.377 57.895 0.00 0.00 0.00 4.85
3502 3740 2.398429 CAGTGATGCGAGCTTGCG 59.602 61.111 20.97 5.91 37.81 4.85
3514 3753 3.311110 GGTGGGCGACTCCAGTGA 61.311 66.667 0.00 0.00 37.50 3.41
3516 3755 2.607750 ATGGTGGGCGACTCCAGT 60.608 61.111 10.96 0.00 37.50 4.00
3539 3778 1.135746 GTTGTAGAGAGGTCGTCGGTG 60.136 57.143 0.00 0.00 0.00 4.94
3540 3779 1.163554 GTTGTAGAGAGGTCGTCGGT 58.836 55.000 0.00 0.00 0.00 4.69
3556 3803 2.749865 CGCACCATACCCGCTGTTG 61.750 63.158 0.00 0.00 0.00 3.33
3558 3805 3.387091 TCGCACCATACCCGCTGT 61.387 61.111 0.00 0.00 0.00 4.40
3583 3830 1.940758 GCACACGTGTTGCAAGCTG 60.941 57.895 27.10 13.98 0.00 4.24
3613 3860 0.808125 TGTCACAACAACACCACTGC 59.192 50.000 0.00 0.00 30.70 4.40
3632 3879 2.338015 CGGTGCTCCAAGCTTGCAT 61.338 57.895 21.43 0.00 42.97 3.96
3651 3898 0.462759 GCTGGTGCATAGGAGGTCAC 60.463 60.000 0.00 0.00 39.41 3.67
3672 3919 3.496160 GCTCACCGGGGTCATAACATAAT 60.496 47.826 2.12 0.00 0.00 1.28
3681 3928 3.572447 TACGAGCTCACCGGGGTCA 62.572 63.158 15.40 0.00 0.00 4.02
3688 3935 0.456995 GACTGTGCTACGAGCTCACC 60.457 60.000 15.40 0.00 42.97 4.02
3718 3965 2.797786 AGTAGAGGAGGTCACTGTGAC 58.202 52.381 28.29 28.29 46.23 3.67
3722 3969 2.948979 CTGCTAGTAGAGGAGGTCACTG 59.051 54.545 0.81 0.00 39.89 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.