Multiple sequence alignment - TraesCS4D01G071100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G071100 chr4D 100.000 3512 0 0 1 3512 46188469 46184958 0.000000e+00 6486.0
1 TraesCS4D01G071100 chr4D 89.416 1833 123 37 766 2569 46176682 46178472 0.000000e+00 2244.0
2 TraesCS4D01G071100 chr4D 88.205 195 14 5 211 396 46174810 46175004 1.270000e-54 224.0
3 TraesCS4D01G071100 chr4B 92.198 2025 104 24 664 2658 67544248 67542248 0.000000e+00 2815.0
4 TraesCS4D01G071100 chr4B 91.663 2039 122 20 760 2763 67354548 67352523 0.000000e+00 2780.0
5 TraesCS4D01G071100 chr4B 91.130 1646 111 18 1050 2666 67485158 67483519 0.000000e+00 2198.0
6 TraesCS4D01G071100 chr4B 90.567 1622 103 34 984 2570 67094932 67096538 0.000000e+00 2102.0
7 TraesCS4D01G071100 chr4B 90.217 368 16 8 2983 3333 67344725 67344361 2.470000e-126 462.0
8 TraesCS4D01G071100 chr4B 90.994 322 25 1 2 323 67492165 67491848 6.960000e-117 431.0
9 TraesCS4D01G071100 chr4B 89.297 327 24 2 2 328 67545138 67544823 1.960000e-107 399.0
10 TraesCS4D01G071100 chr4B 81.797 434 27 21 260 678 67355045 67354649 2.030000e-82 316.0
11 TraesCS4D01G071100 chr4B 86.099 223 15 7 464 671 67491687 67491466 3.530000e-55 226.0
12 TraesCS4D01G071100 chr4B 86.099 223 15 7 464 671 67544501 67544280 3.530000e-55 226.0
13 TraesCS4D01G071100 chr4B 93.578 109 6 1 1 108 67087905 67088013 1.010000e-35 161.0
14 TraesCS4D01G071100 chr4B 96.774 62 2 0 2706 2767 67483526 67483465 1.720000e-18 104.0
15 TraesCS4D01G071100 chr4B 94.737 38 2 0 360 397 67088027 67088064 3.790000e-05 60.2
16 TraesCS4D01G071100 chr4A 90.463 2181 118 49 595 2732 552816353 552818486 0.000000e+00 2793.0
17 TraesCS4D01G071100 chr4A 92.013 1565 89 24 998 2529 552833199 552831638 0.000000e+00 2165.0
18 TraesCS4D01G071100 chr4A 91.714 350 18 7 56 396 552844304 552843957 3.170000e-130 475.0
19 TraesCS4D01G071100 chr4A 91.453 351 14 6 3032 3367 552820229 552820578 5.310000e-128 468.0
20 TraesCS4D01G071100 chr4A 85.380 342 25 15 2 327 552815250 552815582 7.270000e-87 331.0
21 TraesCS4D01G071100 chr4A 88.764 89 7 3 3426 3512 552820987 552821074 4.790000e-19 106.0
22 TraesCS4D01G071100 chr4A 97.059 34 1 0 363 396 552815578 552815611 1.360000e-04 58.4
23 TraesCS4D01G071100 chr5B 78.559 1124 189 34 1282 2373 78221084 78219981 0.000000e+00 693.0
24 TraesCS4D01G071100 chr5A 78.540 1123 191 37 1282 2373 69140847 69141950 0.000000e+00 693.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G071100 chr4D 46184958 46188469 3511 True 6486.000000 6486 100.0000 1 3512 1 chr4D.!!$R1 3511
1 TraesCS4D01G071100 chr4D 46174810 46178472 3662 False 1234.000000 2244 88.8105 211 2569 2 chr4D.!!$F1 2358
2 TraesCS4D01G071100 chr4B 67094932 67096538 1606 False 2102.000000 2102 90.5670 984 2570 1 chr4B.!!$F1 1586
3 TraesCS4D01G071100 chr4B 67352523 67355045 2522 True 1548.000000 2780 86.7300 260 2763 2 chr4B.!!$R2 2503
4 TraesCS4D01G071100 chr4B 67483465 67485158 1693 True 1151.000000 2198 93.9520 1050 2767 2 chr4B.!!$R3 1717
5 TraesCS4D01G071100 chr4B 67542248 67545138 2890 True 1146.666667 2815 89.1980 2 2658 3 chr4B.!!$R5 2656
6 TraesCS4D01G071100 chr4B 67491466 67492165 699 True 328.500000 431 88.5465 2 671 2 chr4B.!!$R4 669
7 TraesCS4D01G071100 chr4A 552831638 552833199 1561 True 2165.000000 2165 92.0130 998 2529 1 chr4A.!!$R1 1531
8 TraesCS4D01G071100 chr4A 552815250 552821074 5824 False 751.280000 2793 90.6238 2 3512 5 chr4A.!!$F1 3510
9 TraesCS4D01G071100 chr5B 78219981 78221084 1103 True 693.000000 693 78.5590 1282 2373 1 chr5B.!!$R1 1091
10 TraesCS4D01G071100 chr5A 69140847 69141950 1103 False 693.000000 693 78.5400 1282 2373 1 chr5A.!!$F1 1091

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 199 0.463295 CCGAGAAGAGCATGCACCAT 60.463 55.0 21.98 5.53 0.00 3.55 F
538 1041 0.716108 CGCAAGAGAATGGTCGACAC 59.284 55.0 18.91 7.49 43.02 3.67 F
694 1530 0.978146 AGTCCGAGACCCATTCCCAG 60.978 60.0 1.06 0.00 32.18 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1065 3079 0.324614 TGGATCGATGCCACAACAGT 59.675 50.000 14.82 0.0 0.0 3.55 R
2302 4346 2.126071 CACGAACCGCCGATCACT 60.126 61.111 0.00 0.0 0.0 3.41 R
2686 4815 1.557832 CCCATTTCTCCCCGTCAACTA 59.442 52.381 0.00 0.0 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 41 3.423154 CCGGAAGCAACTCGCACC 61.423 66.667 0.00 0.00 46.13 5.01
111 118 3.209097 ACCACACCACACGCTTGC 61.209 61.111 0.00 0.00 0.00 4.01
188 199 0.463295 CCGAGAAGAGCATGCACCAT 60.463 55.000 21.98 5.53 0.00 3.55
218 229 3.070015 CCCCAATTGCCTAATAAAGCCTG 59.930 47.826 0.00 0.00 0.00 4.85
243 254 1.888512 TGCATGTGCTCTTTTTCCTCC 59.111 47.619 6.55 0.00 42.66 4.30
341 358 1.117150 GGTCAAGGGCAGGTACGATA 58.883 55.000 0.00 0.00 0.00 2.92
349 366 3.884091 AGGGCAGGTACGATATCGATATC 59.116 47.826 30.75 28.27 43.02 1.63
461 706 5.811399 TTTCAGTGGAGTGTTAACAACTG 57.189 39.130 23.38 23.38 36.55 3.16
489 866 5.753438 GGAACGAATGCAATACTAGTGATCA 59.247 40.000 5.39 0.00 0.00 2.92
490 867 6.292381 GGAACGAATGCAATACTAGTGATCAC 60.292 42.308 18.47 18.47 0.00 3.06
492 869 4.740205 CGAATGCAATACTAGTGATCACGT 59.260 41.667 19.85 14.80 36.20 4.49
536 1039 3.418675 TCGCAAGAGAATGGTCGAC 57.581 52.632 7.13 7.13 45.01 4.20
538 1041 0.716108 CGCAAGAGAATGGTCGACAC 59.284 55.000 18.91 7.49 43.02 3.67
560 1063 8.986477 ACACATAGTTTTCTTTATCCAATTGC 57.014 30.769 0.00 0.00 0.00 3.56
694 1530 0.978146 AGTCCGAGACCCATTCCCAG 60.978 60.000 1.06 0.00 32.18 4.45
751 1588 3.268013 ACCGACAAAATCAAGAAAGCG 57.732 42.857 0.00 0.00 0.00 4.68
758 1595 4.234574 CAAAATCAAGAAAGCGTAACCCC 58.765 43.478 0.00 0.00 0.00 4.95
777 2754 1.544246 CCCCTTTAAACGGCAGGAAAG 59.456 52.381 0.00 0.00 0.00 2.62
804 2789 1.202371 TCAAATCGGAACCCTCGATCG 60.202 52.381 9.36 9.36 45.20 3.69
813 2798 3.856309 CCTCGATCGGGATCCACA 58.144 61.111 18.72 0.00 34.40 4.17
918 2903 2.894126 GACTCAGTCTTCTCCAACCTCA 59.106 50.000 0.00 0.00 0.00 3.86
931 2937 3.117888 TCCAACCTCACAAGCTTCTTCTT 60.118 43.478 0.00 0.00 0.00 2.52
1065 3079 3.120820 CGATCCATCGTTTTTCGTGTGAA 60.121 43.478 0.55 0.00 44.74 3.18
1066 3080 3.595709 TCCATCGTTTTTCGTGTGAAC 57.404 42.857 0.00 0.00 40.80 3.18
1942 3965 3.849951 GGGAGATGGCCGCGAAGA 61.850 66.667 8.23 0.00 0.00 2.87
2660 4789 2.094545 GTGGGAAATCAGATTGTGTGGC 60.095 50.000 0.00 0.00 0.00 5.01
2682 4811 0.397675 TGGCCGAGATCATCTGGTCT 60.398 55.000 0.00 0.00 30.53 3.85
2686 4815 1.753649 CCGAGATCATCTGGTCTGTGT 59.246 52.381 0.00 0.00 0.00 3.72
2774 5534 4.584325 TGACAGAAGAGGGAAAATGGTTTG 59.416 41.667 0.00 0.00 0.00 2.93
2789 5549 2.169352 TGGTTTGTGTGGGTGATTTTGG 59.831 45.455 0.00 0.00 0.00 3.28
2790 5550 2.209273 GTTTGTGTGGGTGATTTTGGC 58.791 47.619 0.00 0.00 0.00 4.52
2795 5555 2.825532 GTGTGGGTGATTTTGGCTGTAT 59.174 45.455 0.00 0.00 0.00 2.29
2796 5556 4.013728 GTGTGGGTGATTTTGGCTGTATA 58.986 43.478 0.00 0.00 0.00 1.47
2814 5574 8.940952 GGCTGTATAACCATTGAGATAGATTTC 58.059 37.037 0.00 0.00 0.00 2.17
2832 5592 1.586042 CGTGCAACAAGGTGTGCAC 60.586 57.895 16.70 16.70 44.29 4.57
2841 5601 2.949644 ACAAGGTGTGCACTAAAGGTTC 59.050 45.455 19.41 0.00 0.00 3.62
2843 5603 1.202891 AGGTGTGCACTAAAGGTTCCC 60.203 52.381 19.41 4.04 0.00 3.97
2844 5604 1.202891 GGTGTGCACTAAAGGTTCCCT 60.203 52.381 19.41 0.00 33.87 4.20
2845 5605 1.880027 GTGTGCACTAAAGGTTCCCTG 59.120 52.381 19.41 0.00 32.13 4.45
2851 5613 4.098807 TGCACTAAAGGTTCCCTGAAAAAC 59.901 41.667 0.00 0.00 32.13 2.43
2853 5615 5.394773 GCACTAAAGGTTCCCTGAAAAACAA 60.395 40.000 0.00 0.00 32.13 2.83
2854 5616 6.273071 CACTAAAGGTTCCCTGAAAAACAAG 58.727 40.000 0.00 0.00 32.13 3.16
2866 5628 5.516339 CCTGAAAAACAAGTGTGCACTAAAG 59.484 40.000 19.41 8.30 41.58 1.85
2871 5633 6.952773 AAACAAGTGTGCACTAAAGGATTA 57.047 33.333 19.41 0.00 41.58 1.75
2873 5635 7.524717 AACAAGTGTGCACTAAAGGATTATT 57.475 32.000 19.41 0.00 41.58 1.40
2875 5637 8.630054 ACAAGTGTGCACTAAAGGATTATTAA 57.370 30.769 19.41 0.00 41.58 1.40
2881 5643 8.511321 TGTGCACTAAAGGATTATTAACTTGTG 58.489 33.333 19.41 0.00 0.00 3.33
2882 5644 8.512138 GTGCACTAAAGGATTATTAACTTGTGT 58.488 33.333 10.32 0.00 0.00 3.72
2889 6410 8.630054 AAGGATTATTAACTTGTGTAGCAACA 57.370 30.769 0.00 0.00 32.90 3.33
2914 6435 2.229675 ATCTTGAATCGCAGCGATGA 57.770 45.000 30.41 22.21 46.30 2.92
2915 6436 2.229675 TCTTGAATCGCAGCGATGAT 57.770 45.000 30.41 16.44 46.30 2.45
2920 6441 2.796593 TGAATCGCAGCGATGATACTTG 59.203 45.455 30.41 0.00 46.30 3.16
2926 6447 2.474359 GCAGCGATGATACTTGTAGCAG 59.526 50.000 4.02 0.00 0.00 4.24
2928 6449 4.793028 GCAGCGATGATACTTGTAGCAGTA 60.793 45.833 4.02 0.00 33.70 2.74
2929 6450 4.677378 CAGCGATGATACTTGTAGCAGTAC 59.323 45.833 0.00 0.00 31.92 2.73
2930 6451 4.338400 AGCGATGATACTTGTAGCAGTACA 59.662 41.667 5.04 0.00 37.38 2.90
2931 6452 4.441415 GCGATGATACTTGTAGCAGTACAC 59.559 45.833 5.04 0.00 38.95 2.90
2932 6453 5.733655 GCGATGATACTTGTAGCAGTACACT 60.734 44.000 5.04 0.00 38.95 3.55
2933 6454 5.683302 CGATGATACTTGTAGCAGTACACTG 59.317 44.000 4.96 4.96 46.40 3.66
2934 6455 5.324784 TGATACTTGTAGCAGTACACTGG 57.675 43.478 11.18 0.00 43.94 4.00
2935 6456 2.457366 ACTTGTAGCAGTACACTGGC 57.543 50.000 11.18 4.02 43.94 4.85
2936 6457 1.971357 ACTTGTAGCAGTACACTGGCT 59.029 47.619 11.18 10.48 43.94 4.75
2937 6458 2.368875 ACTTGTAGCAGTACACTGGCTT 59.631 45.455 11.18 0.00 43.94 4.35
2938 6459 2.743636 TGTAGCAGTACACTGGCTTC 57.256 50.000 11.18 7.28 43.94 3.86
2939 6460 1.067846 TGTAGCAGTACACTGGCTTCG 60.068 52.381 11.18 0.00 43.94 3.79
2940 6461 1.067776 GTAGCAGTACACTGGCTTCGT 60.068 52.381 11.18 0.00 43.94 3.85
2941 6462 0.319900 AGCAGTACACTGGCTTCGTG 60.320 55.000 11.18 0.00 43.94 4.35
2942 6463 1.901650 GCAGTACACTGGCTTCGTGC 61.902 60.000 11.18 0.00 43.94 5.34
2943 6464 0.599991 CAGTACACTGGCTTCGTGCA 60.600 55.000 1.21 0.00 45.15 4.57
2944 6465 0.319900 AGTACACTGGCTTCGTGCAG 60.320 55.000 0.00 0.00 45.15 4.41
2945 6466 0.319555 GTACACTGGCTTCGTGCAGA 60.320 55.000 0.00 0.00 45.15 4.26
2946 6467 0.391228 TACACTGGCTTCGTGCAGAA 59.609 50.000 0.00 0.00 45.15 3.02
2947 6468 1.160329 ACACTGGCTTCGTGCAGAAC 61.160 55.000 0.00 0.00 45.15 3.01
2959 6480 3.334272 GTGCAGAACGTTTAGCAGTTT 57.666 42.857 23.30 0.00 37.72 2.66
2960 6481 3.691498 GTGCAGAACGTTTAGCAGTTTT 58.309 40.909 23.30 0.00 37.72 2.43
2961 6482 3.482110 GTGCAGAACGTTTAGCAGTTTTG 59.518 43.478 23.30 0.00 37.72 2.44
2962 6483 3.127895 TGCAGAACGTTTAGCAGTTTTGT 59.872 39.130 20.22 0.00 35.64 2.83
2963 6484 3.482110 GCAGAACGTTTAGCAGTTTTGTG 59.518 43.478 17.58 0.00 35.64 3.33
2964 6485 3.482110 CAGAACGTTTAGCAGTTTTGTGC 59.518 43.478 0.46 0.00 44.35 4.57
2965 6486 3.127895 AGAACGTTTAGCAGTTTTGTGCA 59.872 39.130 0.46 0.00 46.60 4.57
2966 6487 3.065019 ACGTTTAGCAGTTTTGTGCAG 57.935 42.857 0.00 0.00 46.60 4.41
2967 6488 2.223479 ACGTTTAGCAGTTTTGTGCAGG 60.223 45.455 0.00 0.00 46.60 4.85
2968 6489 2.032799 CGTTTAGCAGTTTTGTGCAGGA 59.967 45.455 0.00 0.00 46.60 3.86
2969 6490 3.372060 GTTTAGCAGTTTTGTGCAGGAC 58.628 45.455 0.00 0.00 46.60 3.85
2970 6491 1.225855 TAGCAGTTTTGTGCAGGACG 58.774 50.000 0.00 0.00 46.60 4.79
2971 6492 0.748005 AGCAGTTTTGTGCAGGACGT 60.748 50.000 0.00 0.00 46.60 4.34
2972 6493 0.941542 GCAGTTTTGTGCAGGACGTA 59.058 50.000 0.00 0.00 43.41 3.57
2973 6494 1.069906 GCAGTTTTGTGCAGGACGTAG 60.070 52.381 0.00 0.00 43.41 3.51
2974 6495 3.631993 GCAGTTTTGTGCAGGACGTAGT 61.632 50.000 0.00 0.00 44.38 2.73
2985 6506 2.654877 ACGTAGTCGGGCTTGGTG 59.345 61.111 0.00 0.00 29.74 4.17
2990 6511 0.323629 TAGTCGGGCTTGGTGGAAAG 59.676 55.000 0.00 0.00 0.00 2.62
2993 6514 0.404040 TCGGGCTTGGTGGAAAGAAT 59.596 50.000 0.00 0.00 0.00 2.40
2995 6516 1.886222 CGGGCTTGGTGGAAAGAATCA 60.886 52.381 0.00 0.00 0.00 2.57
2997 6518 2.167075 GGGCTTGGTGGAAAGAATCATG 59.833 50.000 0.00 0.00 0.00 3.07
3005 6526 5.662208 TGGTGGAAAGAATCATGGCATAAAT 59.338 36.000 0.00 0.00 0.00 1.40
3011 6532 7.230108 GGAAAGAATCATGGCATAAATGAGAGA 59.770 37.037 0.00 0.00 37.46 3.10
3017 6538 4.046938 TGGCATAAATGAGAGAGTCGTC 57.953 45.455 0.00 0.00 0.00 4.20
3018 6539 3.046390 GGCATAAATGAGAGAGTCGTCG 58.954 50.000 0.00 0.00 0.00 5.12
3019 6540 3.489398 GGCATAAATGAGAGAGTCGTCGT 60.489 47.826 0.00 0.00 0.00 4.34
3020 6541 3.726730 GCATAAATGAGAGAGTCGTCGTC 59.273 47.826 0.00 0.00 0.00 4.20
3033 6554 1.862201 TCGTCGTCGCTTTCATTTGTT 59.138 42.857 0.00 0.00 36.96 2.83
3043 6670 4.085619 CGCTTTCATTTGTTTCACTTTCGG 60.086 41.667 0.00 0.00 0.00 4.30
3166 6793 4.152625 GCATCGTGCGAGCCACAC 62.153 66.667 0.00 0.00 44.91 3.82
3185 6815 2.996621 CACCCGTCATTTTCAGAGACTC 59.003 50.000 0.00 0.00 0.00 3.36
3223 6853 1.064906 ACATGGATGTGAGCTTCAGGG 60.065 52.381 0.00 0.00 40.03 4.45
3225 6855 1.452833 GGATGTGAGCTTCAGGGCC 60.453 63.158 0.00 0.00 0.00 5.80
3228 6858 4.785453 GTGAGCTTCAGGGCCGGG 62.785 72.222 2.18 0.00 0.00 5.73
3234 6864 4.660611 TTCAGGGCCGGGGGTGTA 62.661 66.667 2.18 0.00 0.00 2.90
3235 6865 3.954740 TTCAGGGCCGGGGGTGTAT 62.955 63.158 2.18 0.00 0.00 2.29
3303 6944 2.094659 CACCACGTCGAGGATGTGC 61.095 63.158 16.05 0.00 45.15 4.57
3306 6947 2.680352 ACGTCGAGGATGTGCCCT 60.680 61.111 12.85 0.00 39.77 5.19
3342 6983 4.022762 AGCAAATAACAACCGTGCATGTAA 60.023 37.500 4.96 0.00 37.68 2.41
3343 6984 4.681942 GCAAATAACAACCGTGCATGTAAA 59.318 37.500 4.96 0.00 35.28 2.01
3347 6988 4.576216 AACAACCGTGCATGTAAATTCA 57.424 36.364 4.96 0.00 0.00 2.57
3392 7033 2.795231 TTTTGCTCATCTGGGAGAGG 57.205 50.000 0.00 0.00 37.05 3.69
3393 7034 0.254178 TTTGCTCATCTGGGAGAGGC 59.746 55.000 0.00 0.00 37.05 4.70
3394 7035 0.619832 TTGCTCATCTGGGAGAGGCT 60.620 55.000 0.00 0.00 37.05 4.58
3405 7046 2.907703 GAGAGGCTCCACATCCTGA 58.092 57.895 11.71 0.00 31.71 3.86
3407 7048 1.138661 GAGAGGCTCCACATCCTGAAG 59.861 57.143 11.71 0.00 31.71 3.02
3408 7049 0.908198 GAGGCTCCACATCCTGAAGT 59.092 55.000 2.15 0.00 31.71 3.01
3409 7050 1.280421 GAGGCTCCACATCCTGAAGTT 59.720 52.381 2.15 0.00 31.71 2.66
3410 7051 1.707427 AGGCTCCACATCCTGAAGTTT 59.293 47.619 0.00 0.00 0.00 2.66
3413 7054 3.149196 GCTCCACATCCTGAAGTTTGAA 58.851 45.455 0.00 0.00 0.00 2.69
3414 7055 3.057946 GCTCCACATCCTGAAGTTTGAAC 60.058 47.826 0.00 0.00 0.00 3.18
3415 7056 3.486383 TCCACATCCTGAAGTTTGAACC 58.514 45.455 0.00 0.00 0.00 3.62
3416 7057 3.117701 TCCACATCCTGAAGTTTGAACCA 60.118 43.478 0.00 0.00 0.00 3.67
3417 7058 3.636300 CCACATCCTGAAGTTTGAACCAA 59.364 43.478 0.00 0.00 0.00 3.67
3418 7059 4.261741 CCACATCCTGAAGTTTGAACCAAG 60.262 45.833 0.00 0.00 0.00 3.61
3420 7061 5.242393 CACATCCTGAAGTTTGAACCAAGAT 59.758 40.000 0.00 0.00 0.00 2.40
3421 7062 5.242393 ACATCCTGAAGTTTGAACCAAGATG 59.758 40.000 0.00 0.00 0.00 2.90
3423 7064 3.318839 CCTGAAGTTTGAACCAAGATGCA 59.681 43.478 0.00 0.00 0.00 3.96
3426 7067 2.297701 AGTTTGAACCAAGATGCACGT 58.702 42.857 0.00 0.00 0.00 4.49
3427 7068 3.472652 AGTTTGAACCAAGATGCACGTA 58.527 40.909 0.00 0.00 0.00 3.57
3428 7069 3.498397 AGTTTGAACCAAGATGCACGTAG 59.502 43.478 0.00 0.00 0.00 3.51
3429 7070 3.394674 TTGAACCAAGATGCACGTAGA 57.605 42.857 0.00 0.00 0.00 2.59
3430 7071 2.959516 TGAACCAAGATGCACGTAGAG 58.040 47.619 0.00 0.00 0.00 2.43
3431 7072 2.299013 TGAACCAAGATGCACGTAGAGT 59.701 45.455 0.00 0.00 0.00 3.24
3432 7073 3.508402 TGAACCAAGATGCACGTAGAGTA 59.492 43.478 0.00 0.00 0.00 2.59
3433 7074 3.784701 ACCAAGATGCACGTAGAGTAG 57.215 47.619 0.00 0.00 0.00 2.57
3434 7075 2.159226 ACCAAGATGCACGTAGAGTAGC 60.159 50.000 0.00 0.00 0.00 3.58
3442 7435 4.928601 TGCACGTAGAGTAGCGAATAATT 58.071 39.130 0.00 0.00 32.22 1.40
3474 7467 2.275380 GGCACATTGAGCCGGGTTT 61.275 57.895 8.00 0.00 43.15 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.890683 ACCGAGGTTTCCGTAACGAT 59.109 50.000 0.00 0.00 37.64 3.73
38 41 4.680237 TGTCAGCAAGGACGGCGG 62.680 66.667 13.24 0.00 40.72 6.13
111 118 2.237751 CGGCTCGCCTCCGTTAATG 61.238 63.158 6.35 0.00 41.85 1.90
145 156 1.379642 GGCAAAATCGGCTGAGAGGG 61.380 60.000 0.00 0.00 0.00 4.30
188 199 2.390225 AGGCAATTGGGGTGTACAAA 57.610 45.000 7.72 0.00 0.00 2.83
218 229 4.082354 AGGAAAAAGAGCACATGCATCTTC 60.082 41.667 6.64 1.90 45.16 2.87
243 254 2.083774 TGCAGTTCAGGGCGATAAAAG 58.916 47.619 0.00 0.00 0.00 2.27
349 366 0.537188 AGTCACCCAAGCCTACATCG 59.463 55.000 0.00 0.00 0.00 3.84
441 686 3.202906 GCAGTTGTTAACACTCCACTGA 58.797 45.455 29.48 5.50 0.00 3.41
453 698 3.365868 GCATTCGTTCCATGCAGTTGTTA 60.366 43.478 0.00 0.00 45.50 2.41
461 706 3.698029 AGTATTGCATTCGTTCCATGC 57.302 42.857 0.00 0.00 46.25 4.06
490 867 2.872925 CGGGCTCGTACGTGAACG 60.873 66.667 20.61 17.77 44.19 3.95
492 869 2.562912 GTCGGGCTCGTACGTGAA 59.437 61.111 20.61 0.00 37.69 3.18
506 1003 1.524355 CTCTTGCGATGCTAATGGTCG 59.476 52.381 0.00 0.00 38.34 4.79
536 1039 7.492344 GGGCAATTGGATAAAGAAAACTATGTG 59.508 37.037 7.72 0.00 0.00 3.21
538 1041 6.986231 GGGGCAATTGGATAAAGAAAACTATG 59.014 38.462 7.72 0.00 0.00 2.23
579 1085 8.204160 TTCTTAGAGAAAATCTCACTGTTGTGA 58.796 33.333 9.82 0.00 45.73 3.58
580 1086 7.953158 TCTTAGAGAAAATCTCACTGTTGTG 57.047 36.000 9.82 0.00 45.73 3.33
610 1373 1.271163 GGATGGTTTCGTCACTTGGGA 60.271 52.381 0.00 0.00 0.00 4.37
611 1374 1.165270 GGATGGTTTCGTCACTTGGG 58.835 55.000 0.00 0.00 0.00 4.12
713 1550 5.814705 TGTCGGTTTTGCTTGAATCATTTTT 59.185 32.000 0.00 0.00 0.00 1.94
714 1551 5.355596 TGTCGGTTTTGCTTGAATCATTTT 58.644 33.333 0.00 0.00 0.00 1.82
716 1553 4.582701 TGTCGGTTTTGCTTGAATCATT 57.417 36.364 0.00 0.00 0.00 2.57
718 1555 4.377839 TTTGTCGGTTTTGCTTGAATCA 57.622 36.364 0.00 0.00 0.00 2.57
719 1556 5.461737 TGATTTTGTCGGTTTTGCTTGAATC 59.538 36.000 0.00 0.00 0.00 2.52
720 1557 5.355596 TGATTTTGTCGGTTTTGCTTGAAT 58.644 33.333 0.00 0.00 0.00 2.57
721 1558 4.748892 TGATTTTGTCGGTTTTGCTTGAA 58.251 34.783 0.00 0.00 0.00 2.69
722 1559 4.377839 TGATTTTGTCGGTTTTGCTTGA 57.622 36.364 0.00 0.00 0.00 3.02
723 1560 4.803088 TCTTGATTTTGTCGGTTTTGCTTG 59.197 37.500 0.00 0.00 0.00 4.01
724 1561 5.004922 TCTTGATTTTGTCGGTTTTGCTT 57.995 34.783 0.00 0.00 0.00 3.91
725 1562 4.647424 TCTTGATTTTGTCGGTTTTGCT 57.353 36.364 0.00 0.00 0.00 3.91
726 1563 5.710613 TTTCTTGATTTTGTCGGTTTTGC 57.289 34.783 0.00 0.00 0.00 3.68
727 1564 5.554324 CGCTTTCTTGATTTTGTCGGTTTTG 60.554 40.000 0.00 0.00 0.00 2.44
758 1595 2.510613 TCTTTCCTGCCGTTTAAAGGG 58.489 47.619 20.29 20.29 37.03 3.95
770 2747 6.441093 TCCGATTTGATTGATTCTTTCCTG 57.559 37.500 0.00 0.00 0.00 3.86
777 2754 4.260784 CGAGGGTTCCGATTTGATTGATTC 60.261 45.833 0.00 0.00 0.00 2.52
804 2789 0.810031 CGTTCCGACATGTGGATCCC 60.810 60.000 9.90 0.85 34.91 3.85
813 2798 2.431942 GCCACGACGTTCCGACAT 60.432 61.111 0.00 0.00 0.00 3.06
902 2887 2.224402 GCTTGTGAGGTTGGAGAAGACT 60.224 50.000 0.00 0.00 0.00 3.24
918 2903 2.304470 GGGAGGAGAAGAAGAAGCTTGT 59.696 50.000 2.10 0.00 0.00 3.16
966 2976 4.469945 GGGATCCGAATATGGAATGACCTA 59.530 45.833 5.45 0.00 42.46 3.08
1056 3070 0.730265 GCCACAACAGTTCACACGAA 59.270 50.000 0.00 0.00 0.00 3.85
1065 3079 0.324614 TGGATCGATGCCACAACAGT 59.675 50.000 14.82 0.00 0.00 3.55
1066 3080 1.332686 CATGGATCGATGCCACAACAG 59.667 52.381 14.82 2.33 38.44 3.16
1942 3965 4.742201 ATGCTTCGTGGCGTCGCT 62.742 61.111 18.11 0.00 34.52 4.93
2302 4346 2.126071 CACGAACCGCCGATCACT 60.126 61.111 0.00 0.00 0.00 3.41
2531 4648 3.142867 CTTCCATGCGCGCACGTAG 62.143 63.158 39.05 26.30 42.83 3.51
2670 4799 5.105752 GTCAACTACACAGACCAGATGATC 58.894 45.833 0.00 0.00 0.00 2.92
2671 4800 4.380973 CGTCAACTACACAGACCAGATGAT 60.381 45.833 0.00 0.00 0.00 2.45
2672 4801 3.057526 CGTCAACTACACAGACCAGATGA 60.058 47.826 0.00 0.00 0.00 2.92
2673 4802 3.245797 CGTCAACTACACAGACCAGATG 58.754 50.000 0.00 0.00 0.00 2.90
2682 4811 1.707106 TTCTCCCCGTCAACTACACA 58.293 50.000 0.00 0.00 0.00 3.72
2686 4815 1.557832 CCCATTTCTCCCCGTCAACTA 59.442 52.381 0.00 0.00 0.00 2.24
2745 5505 1.938585 TCCCTCTTCTGTCAACCGAT 58.061 50.000 0.00 0.00 0.00 4.18
2774 5534 1.039856 ACAGCCAAAATCACCCACAC 58.960 50.000 0.00 0.00 0.00 3.82
2789 5549 8.651588 CGAAATCTATCTCAATGGTTATACAGC 58.348 37.037 0.00 0.00 0.00 4.40
2790 5550 9.698309 ACGAAATCTATCTCAATGGTTATACAG 57.302 33.333 0.00 0.00 0.00 2.74
2795 5555 6.345298 TGCACGAAATCTATCTCAATGGTTA 58.655 36.000 0.00 0.00 0.00 2.85
2796 5556 5.185454 TGCACGAAATCTATCTCAATGGTT 58.815 37.500 0.00 0.00 0.00 3.67
2814 5574 1.586042 GTGCACACCTTGTTGCACG 60.586 57.895 13.17 0.00 41.55 5.34
2841 5601 2.166254 AGTGCACACTTGTTTTTCAGGG 59.834 45.455 21.04 0.00 38.83 4.45
2843 5603 5.516339 CCTTTAGTGCACACTTGTTTTTCAG 59.484 40.000 21.04 0.00 42.54 3.02
2844 5604 5.184096 TCCTTTAGTGCACACTTGTTTTTCA 59.816 36.000 21.04 0.00 42.54 2.69
2845 5605 5.646606 TCCTTTAGTGCACACTTGTTTTTC 58.353 37.500 21.04 0.00 42.54 2.29
2851 5613 8.730680 AGTTAATAATCCTTTAGTGCACACTTG 58.269 33.333 21.04 6.29 42.54 3.16
2853 5615 8.730680 CAAGTTAATAATCCTTTAGTGCACACT 58.269 33.333 21.04 8.57 45.02 3.55
2854 5616 8.512138 ACAAGTTAATAATCCTTTAGTGCACAC 58.488 33.333 21.04 2.71 0.00 3.82
2875 5637 8.629158 TCAAGATTTTTATGTTGCTACACAAGT 58.371 29.630 2.28 0.00 39.50 3.16
2881 5643 7.484641 TGCGATTCAAGATTTTTATGTTGCTAC 59.515 33.333 0.00 0.00 0.00 3.58
2882 5644 7.534282 TGCGATTCAAGATTTTTATGTTGCTA 58.466 30.769 0.00 0.00 0.00 3.49
2889 6410 5.484173 TCGCTGCGATTCAAGATTTTTAT 57.516 34.783 22.24 0.00 0.00 1.40
2914 6435 3.769844 AGCCAGTGTACTGCTACAAGTAT 59.230 43.478 6.50 0.00 42.47 2.12
2915 6436 3.162666 AGCCAGTGTACTGCTACAAGTA 58.837 45.455 6.50 0.00 42.47 2.24
2920 6441 1.067776 ACGAAGCCAGTGTACTGCTAC 60.068 52.381 6.50 0.00 42.47 3.58
2926 6447 0.319555 TCTGCACGAAGCCAGTGTAC 60.320 55.000 0.00 0.00 44.83 2.90
2928 6449 1.146041 TTCTGCACGAAGCCAGTGT 59.854 52.632 0.00 0.00 44.83 3.55
2929 6450 1.571460 GTTCTGCACGAAGCCAGTG 59.429 57.895 0.00 0.10 44.83 3.66
2930 6451 4.049393 GTTCTGCACGAAGCCAGT 57.951 55.556 0.00 0.00 44.83 4.00
2939 6460 3.334272 AAACTGCTAAACGTTCTGCAC 57.666 42.857 19.61 2.74 0.00 4.57
2940 6461 3.127895 ACAAAACTGCTAAACGTTCTGCA 59.872 39.130 21.32 21.32 0.00 4.41
2941 6462 3.482110 CACAAAACTGCTAAACGTTCTGC 59.518 43.478 15.63 15.63 0.00 4.26
2942 6463 3.482110 GCACAAAACTGCTAAACGTTCTG 59.518 43.478 0.00 0.00 34.06 3.02
2943 6464 3.127895 TGCACAAAACTGCTAAACGTTCT 59.872 39.130 0.00 0.00 38.07 3.01
2944 6465 3.430931 TGCACAAAACTGCTAAACGTTC 58.569 40.909 0.00 0.00 38.07 3.95
2945 6466 3.434637 CTGCACAAAACTGCTAAACGTT 58.565 40.909 0.00 0.00 38.07 3.99
2946 6467 2.223479 CCTGCACAAAACTGCTAAACGT 60.223 45.455 0.00 0.00 38.07 3.99
2947 6468 2.032799 TCCTGCACAAAACTGCTAAACG 59.967 45.455 0.00 0.00 38.07 3.60
2948 6469 3.372060 GTCCTGCACAAAACTGCTAAAC 58.628 45.455 0.00 0.00 38.07 2.01
2949 6470 2.032799 CGTCCTGCACAAAACTGCTAAA 59.967 45.455 0.00 0.00 38.07 1.85
2950 6471 1.601903 CGTCCTGCACAAAACTGCTAA 59.398 47.619 0.00 0.00 38.07 3.09
2951 6472 1.225855 CGTCCTGCACAAAACTGCTA 58.774 50.000 0.00 0.00 38.07 3.49
2952 6473 0.748005 ACGTCCTGCACAAAACTGCT 60.748 50.000 0.00 0.00 38.07 4.24
2953 6474 0.941542 TACGTCCTGCACAAAACTGC 59.058 50.000 0.00 0.00 37.70 4.40
2954 6475 2.210116 ACTACGTCCTGCACAAAACTG 58.790 47.619 0.00 0.00 0.00 3.16
2955 6476 2.480845 GACTACGTCCTGCACAAAACT 58.519 47.619 0.00 0.00 0.00 2.66
2956 6477 1.191647 CGACTACGTCCTGCACAAAAC 59.808 52.381 0.00 0.00 34.56 2.43
2957 6478 1.493772 CGACTACGTCCTGCACAAAA 58.506 50.000 0.00 0.00 34.56 2.44
2958 6479 0.319211 CCGACTACGTCCTGCACAAA 60.319 55.000 0.00 0.00 37.88 2.83
2959 6480 1.287815 CCGACTACGTCCTGCACAA 59.712 57.895 0.00 0.00 37.88 3.33
2960 6481 2.632544 CCCGACTACGTCCTGCACA 61.633 63.158 0.00 0.00 37.88 4.57
2961 6482 2.181021 CCCGACTACGTCCTGCAC 59.819 66.667 0.00 0.00 37.88 4.57
2962 6483 3.755628 GCCCGACTACGTCCTGCA 61.756 66.667 0.00 0.00 37.88 4.41
2963 6484 3.003113 AAGCCCGACTACGTCCTGC 62.003 63.158 0.00 0.00 37.88 4.85
2964 6485 1.153823 CAAGCCCGACTACGTCCTG 60.154 63.158 0.00 0.00 37.88 3.86
2965 6486 2.348888 CCAAGCCCGACTACGTCCT 61.349 63.158 0.00 0.00 37.88 3.85
2966 6487 2.183555 CCAAGCCCGACTACGTCC 59.816 66.667 0.00 0.00 37.88 4.79
2967 6488 1.445582 CACCAAGCCCGACTACGTC 60.446 63.158 0.00 0.00 37.88 4.34
2968 6489 2.654877 CACCAAGCCCGACTACGT 59.345 61.111 0.00 0.00 37.88 3.57
2969 6490 2.125673 CCACCAAGCCCGACTACG 60.126 66.667 0.00 0.00 39.43 3.51
2970 6491 0.035739 TTTCCACCAAGCCCGACTAC 59.964 55.000 0.00 0.00 0.00 2.73
2971 6492 0.323629 CTTTCCACCAAGCCCGACTA 59.676 55.000 0.00 0.00 0.00 2.59
2972 6493 1.073199 CTTTCCACCAAGCCCGACT 59.927 57.895 0.00 0.00 0.00 4.18
2973 6494 0.536460 TTCTTTCCACCAAGCCCGAC 60.536 55.000 0.00 0.00 0.00 4.79
2974 6495 0.404040 ATTCTTTCCACCAAGCCCGA 59.596 50.000 0.00 0.00 0.00 5.14
2975 6496 0.811281 GATTCTTTCCACCAAGCCCG 59.189 55.000 0.00 0.00 0.00 6.13
2976 6497 1.923356 TGATTCTTTCCACCAAGCCC 58.077 50.000 0.00 0.00 0.00 5.19
2977 6498 2.167075 CCATGATTCTTTCCACCAAGCC 59.833 50.000 0.00 0.00 0.00 4.35
2978 6499 2.417787 GCCATGATTCTTTCCACCAAGC 60.418 50.000 0.00 0.00 0.00 4.01
2979 6500 2.827322 TGCCATGATTCTTTCCACCAAG 59.173 45.455 0.00 0.00 0.00 3.61
2980 6501 2.886913 TGCCATGATTCTTTCCACCAA 58.113 42.857 0.00 0.00 0.00 3.67
2985 6506 7.230108 TCTCTCATTTATGCCATGATTCTTTCC 59.770 37.037 0.00 0.00 30.15 3.13
2990 6511 6.128607 CGACTCTCTCATTTATGCCATGATTC 60.129 42.308 0.00 0.00 30.15 2.52
2993 6514 4.100035 ACGACTCTCTCATTTATGCCATGA 59.900 41.667 0.00 0.00 0.00 3.07
2995 6516 4.626042 GACGACTCTCTCATTTATGCCAT 58.374 43.478 0.00 0.00 0.00 4.40
2997 6518 3.046390 CGACGACTCTCTCATTTATGCC 58.954 50.000 0.00 0.00 0.00 4.40
3005 6526 0.949588 AAGCGACGACGACTCTCTCA 60.950 55.000 12.29 0.00 42.66 3.27
3011 6532 1.455786 CAAATGAAAGCGACGACGACT 59.544 47.619 12.29 4.94 42.66 4.18
3017 6538 3.617669 AGTGAAACAAATGAAAGCGACG 58.382 40.909 0.00 0.00 41.43 5.12
3018 6539 5.330792 CGAAAGTGAAACAAATGAAAGCGAC 60.331 40.000 0.00 0.00 41.43 5.19
3019 6540 4.732923 CGAAAGTGAAACAAATGAAAGCGA 59.267 37.500 0.00 0.00 41.43 4.93
3020 6541 4.085619 CCGAAAGTGAAACAAATGAAAGCG 60.086 41.667 0.00 0.00 41.43 4.68
3033 6554 1.072505 GAGCACCCCCGAAAGTGAA 59.927 57.895 3.30 0.00 36.01 3.18
3166 6793 2.622436 GGAGTCTCTGAAAATGACGGG 58.378 52.381 0.00 0.00 36.01 5.28
3219 6849 3.873812 GATACACCCCCGGCCCTG 61.874 72.222 0.00 0.00 0.00 4.45
3223 6853 4.540735 CCGTGATACACCCCCGGC 62.541 72.222 0.00 0.00 0.00 6.13
3225 6855 2.806503 TTTGCCGTGATACACCCCCG 62.807 60.000 0.00 0.00 0.00 5.73
3228 6858 2.812011 GGATATTTGCCGTGATACACCC 59.188 50.000 0.00 0.00 0.00 4.61
3230 6860 3.058914 GCAGGATATTTGCCGTGATACAC 60.059 47.826 2.61 0.00 35.54 2.90
3231 6861 3.138304 GCAGGATATTTGCCGTGATACA 58.862 45.455 2.61 0.00 35.54 2.29
3232 6862 2.157668 CGCAGGATATTTGCCGTGATAC 59.842 50.000 7.36 0.00 38.31 2.24
3233 6863 2.412870 CGCAGGATATTTGCCGTGATA 58.587 47.619 7.36 0.00 38.31 2.15
3234 6864 1.229428 CGCAGGATATTTGCCGTGAT 58.771 50.000 7.36 0.00 38.31 3.06
3235 6865 2.689083 CGCAGGATATTTGCCGTGA 58.311 52.632 7.36 0.00 38.31 4.35
3303 6944 3.465403 CTGGGCTCGGACAGAGGG 61.465 72.222 4.72 0.00 46.91 4.30
3306 6947 1.841302 ATTTGCTGGGCTCGGACAGA 61.841 55.000 0.00 0.00 36.86 3.41
3318 6959 2.414058 TGCACGGTTGTTATTTGCTG 57.586 45.000 0.00 0.00 34.18 4.41
3373 7014 1.340405 GCCTCTCCCAGATGAGCAAAA 60.340 52.381 0.00 0.00 32.22 2.44
3375 7016 0.619832 AGCCTCTCCCAGATGAGCAA 60.620 55.000 0.00 0.00 32.22 3.91
3376 7017 1.002662 AGCCTCTCCCAGATGAGCA 59.997 57.895 0.00 0.00 32.22 4.26
3377 7018 1.747774 GAGCCTCTCCCAGATGAGC 59.252 63.158 0.00 0.00 32.22 4.26
3378 7019 2.439837 GGAGCCTCTCCCAGATGAG 58.560 63.158 1.44 0.00 44.36 2.90
3379 7020 4.716025 GGAGCCTCTCCCAGATGA 57.284 61.111 1.44 0.00 44.36 2.92
3387 7028 1.138661 CTTCAGGATGTGGAGCCTCTC 59.861 57.143 0.00 0.00 34.99 3.20
3388 7029 1.202330 CTTCAGGATGTGGAGCCTCT 58.798 55.000 0.00 0.00 34.99 3.69
3389 7030 0.908198 ACTTCAGGATGTGGAGCCTC 59.092 55.000 0.00 0.00 34.99 4.70
3392 7033 2.783135 TCAAACTTCAGGATGTGGAGC 58.217 47.619 0.00 0.00 37.40 4.70
3393 7034 3.503748 GGTTCAAACTTCAGGATGTGGAG 59.496 47.826 0.00 0.00 37.40 3.86
3394 7035 3.117701 TGGTTCAAACTTCAGGATGTGGA 60.118 43.478 0.00 0.00 37.40 4.02
3396 7037 4.580167 TCTTGGTTCAAACTTCAGGATGTG 59.420 41.667 0.00 0.00 37.40 3.21
3397 7038 4.792068 TCTTGGTTCAAACTTCAGGATGT 58.208 39.130 0.00 0.00 37.40 3.06
3398 7039 5.706916 CATCTTGGTTCAAACTTCAGGATG 58.293 41.667 8.64 8.64 37.37 3.51
3400 7041 3.569701 GCATCTTGGTTCAAACTTCAGGA 59.430 43.478 0.00 0.00 0.00 3.86
3402 7043 4.293415 GTGCATCTTGGTTCAAACTTCAG 58.707 43.478 0.00 0.00 0.00 3.02
3405 7046 2.687935 ACGTGCATCTTGGTTCAAACTT 59.312 40.909 0.00 0.00 0.00 2.66
3407 7048 2.774439 ACGTGCATCTTGGTTCAAAC 57.226 45.000 0.00 0.00 0.00 2.93
3408 7049 3.734463 TCTACGTGCATCTTGGTTCAAA 58.266 40.909 0.00 0.00 0.00 2.69
3409 7050 3.244078 ACTCTACGTGCATCTTGGTTCAA 60.244 43.478 0.00 0.00 0.00 2.69
3410 7051 2.299013 ACTCTACGTGCATCTTGGTTCA 59.701 45.455 0.00 0.00 0.00 3.18
3413 7054 2.159226 GCTACTCTACGTGCATCTTGGT 60.159 50.000 0.00 0.00 0.00 3.67
3414 7055 2.464865 GCTACTCTACGTGCATCTTGG 58.535 52.381 0.00 0.00 0.00 3.61
3415 7056 2.112522 CGCTACTCTACGTGCATCTTG 58.887 52.381 0.00 0.00 0.00 3.02
3416 7057 2.014857 TCGCTACTCTACGTGCATCTT 58.985 47.619 0.00 0.00 0.00 2.40
3417 7058 1.664873 TCGCTACTCTACGTGCATCT 58.335 50.000 0.00 0.00 0.00 2.90
3418 7059 2.470196 TTCGCTACTCTACGTGCATC 57.530 50.000 0.00 0.00 0.00 3.91
3420 7061 4.563337 ATTATTCGCTACTCTACGTGCA 57.437 40.909 0.00 0.00 0.00 4.57
3421 7062 4.382160 GGAATTATTCGCTACTCTACGTGC 59.618 45.833 0.00 0.00 0.00 5.34
3423 7064 6.388435 AAGGAATTATTCGCTACTCTACGT 57.612 37.500 0.00 0.00 0.00 3.57
3426 7067 7.356089 TCCAAAGGAATTATTCGCTACTCTA 57.644 36.000 0.00 0.00 0.00 2.43
3427 7068 6.235231 TCCAAAGGAATTATTCGCTACTCT 57.765 37.500 0.00 0.00 0.00 3.24
3428 7069 5.050023 GCTCCAAAGGAATTATTCGCTACTC 60.050 44.000 0.00 0.00 0.00 2.59
3429 7070 4.816925 GCTCCAAAGGAATTATTCGCTACT 59.183 41.667 0.00 0.00 0.00 2.57
3430 7071 4.574828 TGCTCCAAAGGAATTATTCGCTAC 59.425 41.667 0.00 0.00 0.00 3.58
3431 7072 4.574828 GTGCTCCAAAGGAATTATTCGCTA 59.425 41.667 0.00 0.00 0.00 4.26
3432 7073 3.378427 GTGCTCCAAAGGAATTATTCGCT 59.622 43.478 0.00 0.00 0.00 4.93
3433 7074 3.695816 GTGCTCCAAAGGAATTATTCGC 58.304 45.455 0.00 0.00 0.00 4.70
3434 7075 3.242739 CCGTGCTCCAAAGGAATTATTCG 60.243 47.826 0.00 0.00 0.00 3.34
3442 7435 3.565214 TGCCCGTGCTCCAAAGGA 61.565 61.111 0.00 0.00 38.71 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.