Multiple sequence alignment - TraesCS4D01G069700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G069700 chr4D 100.000 2276 0 0 1 2276 44876933 44874658 0.000000e+00 4204
1 TraesCS4D01G069700 chr4D 97.047 779 22 1 1 778 354739773 354740551 0.000000e+00 1310
2 TraesCS4D01G069700 chr4D 97.044 778 22 1 1 777 378602873 378602096 0.000000e+00 1308
3 TraesCS4D01G069700 chr1D 97.179 780 21 1 1 779 161272860 161272081 0.000000e+00 1317
4 TraesCS4D01G069700 chr1D 96.803 782 24 1 1 781 195525991 195525210 0.000000e+00 1304
5 TraesCS4D01G069700 chr1D 96.442 787 27 1 1 786 104070806 104071592 0.000000e+00 1297
6 TraesCS4D01G069700 chr7D 97.047 779 22 1 1 778 387877110 387876332 0.000000e+00 1310
7 TraesCS4D01G069700 chr7D 97.044 778 22 1 1 777 526464970 526465747 0.000000e+00 1308
8 TraesCS4D01G069700 chr2D 97.044 778 22 1 1 777 575618923 575618146 0.000000e+00 1308
9 TraesCS4D01G069700 chr2D 96.923 780 23 1 1 779 461874199 461874978 0.000000e+00 1306
10 TraesCS4D01G069700 chr5D 96.768 526 15 2 778 1301 565330131 565329606 0.000000e+00 876
11 TraesCS4D01G069700 chr4B 95.817 526 20 2 780 1303 665225340 665224815 0.000000e+00 848
12 TraesCS4D01G069700 chr1B 95.619 525 22 1 778 1301 282310333 282310857 0.000000e+00 841
13 TraesCS4D01G069700 chr1B 95.048 525 25 1 780 1303 613238946 613238422 0.000000e+00 824
14 TraesCS4D01G069700 chr3B 95.048 525 25 1 780 1303 675149379 675148855 0.000000e+00 824
15 TraesCS4D01G069700 chr2B 94.487 526 27 2 780 1303 698956714 698956189 0.000000e+00 809
16 TraesCS4D01G069700 chr4A 93.738 527 32 1 778 1303 562294735 562295261 0.000000e+00 789
17 TraesCS4D01G069700 chr4A 95.013 381 15 4 1898 2275 554815024 554815403 1.510000e-166 595
18 TraesCS4D01G069700 chr4A 96.057 279 10 1 1532 1809 554641812 554642090 9.590000e-124 453
19 TraesCS4D01G069700 chr4A 91.758 182 7 5 1338 1511 554640908 554641089 1.750000e-61 246
20 TraesCS4D01G069700 chr4A 96.939 98 3 0 1805 1902 554643830 554643927 5.030000e-37 165
21 TraesCS4D01G069700 chr6D 90.926 529 42 5 780 1303 48449652 48450179 0.000000e+00 706
22 TraesCS4D01G069700 chr7A 87.856 527 58 6 780 1303 43469668 43469145 4.160000e-172 614


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G069700 chr4D 44874658 44876933 2275 True 4204 4204 100.000 1 2276 1 chr4D.!!$R1 2275
1 TraesCS4D01G069700 chr4D 354739773 354740551 778 False 1310 1310 97.047 1 778 1 chr4D.!!$F1 777
2 TraesCS4D01G069700 chr4D 378602096 378602873 777 True 1308 1308 97.044 1 777 1 chr4D.!!$R2 776
3 TraesCS4D01G069700 chr1D 161272081 161272860 779 True 1317 1317 97.179 1 779 1 chr1D.!!$R1 778
4 TraesCS4D01G069700 chr1D 195525210 195525991 781 True 1304 1304 96.803 1 781 1 chr1D.!!$R2 780
5 TraesCS4D01G069700 chr1D 104070806 104071592 786 False 1297 1297 96.442 1 786 1 chr1D.!!$F1 785
6 TraesCS4D01G069700 chr7D 387876332 387877110 778 True 1310 1310 97.047 1 778 1 chr7D.!!$R1 777
7 TraesCS4D01G069700 chr7D 526464970 526465747 777 False 1308 1308 97.044 1 777 1 chr7D.!!$F1 776
8 TraesCS4D01G069700 chr2D 575618146 575618923 777 True 1308 1308 97.044 1 777 1 chr2D.!!$R1 776
9 TraesCS4D01G069700 chr2D 461874199 461874978 779 False 1306 1306 96.923 1 779 1 chr2D.!!$F1 778
10 TraesCS4D01G069700 chr5D 565329606 565330131 525 True 876 876 96.768 778 1301 1 chr5D.!!$R1 523
11 TraesCS4D01G069700 chr4B 665224815 665225340 525 True 848 848 95.817 780 1303 1 chr4B.!!$R1 523
12 TraesCS4D01G069700 chr1B 282310333 282310857 524 False 841 841 95.619 778 1301 1 chr1B.!!$F1 523
13 TraesCS4D01G069700 chr1B 613238422 613238946 524 True 824 824 95.048 780 1303 1 chr1B.!!$R1 523
14 TraesCS4D01G069700 chr3B 675148855 675149379 524 True 824 824 95.048 780 1303 1 chr3B.!!$R1 523
15 TraesCS4D01G069700 chr2B 698956189 698956714 525 True 809 809 94.487 780 1303 1 chr2B.!!$R1 523
16 TraesCS4D01G069700 chr4A 562294735 562295261 526 False 789 789 93.738 778 1303 1 chr4A.!!$F2 525
17 TraesCS4D01G069700 chr4A 554640908 554643927 3019 False 288 453 94.918 1338 1902 3 chr4A.!!$F3 564
18 TraesCS4D01G069700 chr6D 48449652 48450179 527 False 706 706 90.926 780 1303 1 chr6D.!!$F1 523
19 TraesCS4D01G069700 chr7A 43469145 43469668 523 True 614 614 87.856 780 1303 1 chr7A.!!$R1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 889 1.00563 CGCTCCTCATCGGGATTCC 60.006 63.158 0.0 0.0 34.56 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1956 4419 0.109365 CAATGGACCGCATCGCAAAA 60.109 50.0 0.0 0.0 0.0 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 102 9.665719 TTGCTATTAGTAGTCATGTGAATTTGA 57.334 29.630 0.00 0.00 0.00 2.69
617 619 8.707938 ACTTTTGTTACTTGTTACTCGTTACT 57.292 30.769 0.00 0.00 0.00 2.24
706 708 4.487714 ACCGCTTATCATTTCCTTCTGA 57.512 40.909 0.00 0.00 0.00 3.27
721 723 1.639722 TCTGATCCTCGTTGGGTTCA 58.360 50.000 0.00 0.00 34.89 3.18
745 747 5.638783 ACACTCTTACTTATCGAAAGGACG 58.361 41.667 10.65 0.00 0.00 4.79
886 889 1.005630 CGCTCCTCATCGGGATTCC 60.006 63.158 0.00 0.00 34.56 3.01
955 958 1.219393 GAGGCTCTGGCGCTTAAGT 59.781 57.895 7.64 0.00 39.81 2.24
969 972 4.870991 GCGCTTAAGTAAGGAGTGAGATTT 59.129 41.667 0.00 0.00 33.95 2.17
1224 1228 6.535161 TGGTTAGATACTACCCCTAGCTTA 57.465 41.667 0.00 0.00 33.34 3.09
1482 1498 4.603989 TCATGAGCATTTTTCAAAGCCA 57.396 36.364 0.00 0.00 0.00 4.75
1517 1533 6.443934 TTCAAATTTGTGAACTTTCGGAGA 57.556 33.333 17.47 0.00 32.56 3.71
1518 1534 6.633500 TCAAATTTGTGAACTTTCGGAGAT 57.367 33.333 17.47 0.00 35.04 2.75
1519 1535 6.437928 TCAAATTTGTGAACTTTCGGAGATG 58.562 36.000 17.47 0.00 35.04 2.90
1520 1536 6.262049 TCAAATTTGTGAACTTTCGGAGATGA 59.738 34.615 17.47 0.00 35.04 2.92
1522 1538 6.824305 ATTTGTGAACTTTCGGAGATGATT 57.176 33.333 0.00 0.00 35.04 2.57
1523 1539 5.862924 TTGTGAACTTTCGGAGATGATTC 57.137 39.130 0.00 0.00 35.04 2.52
1526 1542 4.695455 GTGAACTTTCGGAGATGATTCCAA 59.305 41.667 0.00 0.00 37.05 3.53
1527 1543 4.937620 TGAACTTTCGGAGATGATTCCAAG 59.062 41.667 0.00 0.00 37.05 3.61
1528 1544 3.878778 ACTTTCGGAGATGATTCCAAGG 58.121 45.455 0.00 0.00 37.05 3.61
1529 1545 3.264450 ACTTTCGGAGATGATTCCAAGGT 59.736 43.478 0.00 0.00 37.05 3.50
1530 1546 4.263506 ACTTTCGGAGATGATTCCAAGGTT 60.264 41.667 0.00 0.00 37.05 3.50
1537 2255 6.203723 CGGAGATGATTCCAAGGTTAGATTTC 59.796 42.308 0.00 0.00 37.05 2.17
1586 2304 5.456042 CCCACATATGGTGCAATAACTAGGA 60.456 44.000 7.80 0.00 45.66 2.94
1646 2364 4.758674 CACATGTCCTGAGTCAAGTTGATT 59.241 41.667 9.18 4.43 0.00 2.57
1678 2396 0.251165 TCTGTAGGGCTTTGTTGGGC 60.251 55.000 0.00 0.00 0.00 5.36
1682 2400 4.531351 GGGCTTTGTTGGGCCTAA 57.469 55.556 4.53 0.00 46.80 2.69
1688 2407 2.554564 GCTTTGTTGGGCCTAACCTAGT 60.555 50.000 27.17 0.00 39.10 2.57
1743 2462 3.842126 CACGTGTCGCATGAGCCG 61.842 66.667 7.58 0.00 37.52 5.52
1745 2464 4.794439 CGTGTCGCATGAGCCGGA 62.794 66.667 5.05 0.00 37.52 5.14
1762 2481 4.466015 AGCCGGACAAATTTATGTGGAATT 59.534 37.500 5.05 0.00 32.57 2.17
1776 2495 3.686726 TGTGGAATTTGCACCAAAACAAC 59.313 39.130 17.04 0.00 37.97 3.32
1811 4274 6.370166 GTCAAGTATTTATATGAGCCCAGAGC 59.630 42.308 0.00 0.00 44.25 4.09
1873 4336 8.967664 ACAACAAGGTGTAGTTTTGAGTAATA 57.032 30.769 0.00 0.00 0.00 0.98
1878 4341 7.184067 AGGTGTAGTTTTGAGTAATAGGGAG 57.816 40.000 0.00 0.00 0.00 4.30
1902 4365 5.637387 GGGTAGCAATTGGTTGTGTATTTTG 59.363 40.000 16.43 0.00 37.65 2.44
1903 4366 5.120053 GGTAGCAATTGGTTGTGTATTTTGC 59.880 40.000 16.43 0.00 37.65 3.68
1904 4367 4.064388 AGCAATTGGTTGTGTATTTTGCC 58.936 39.130 3.82 0.00 38.92 4.52
1905 4368 3.812053 GCAATTGGTTGTGTATTTTGCCA 59.188 39.130 7.72 0.00 37.65 4.92
1906 4369 4.319405 GCAATTGGTTGTGTATTTTGCCAC 60.319 41.667 7.72 0.00 37.65 5.01
1907 4370 3.460857 TTGGTTGTGTATTTTGCCACC 57.539 42.857 0.00 0.00 0.00 4.61
1908 4371 2.388735 TGGTTGTGTATTTTGCCACCA 58.611 42.857 0.00 0.00 0.00 4.17
1909 4372 2.968574 TGGTTGTGTATTTTGCCACCAT 59.031 40.909 0.00 0.00 0.00 3.55
1910 4373 3.244009 TGGTTGTGTATTTTGCCACCATG 60.244 43.478 0.00 0.00 0.00 3.66
1911 4374 3.006323 GGTTGTGTATTTTGCCACCATGA 59.994 43.478 0.00 0.00 0.00 3.07
1912 4375 4.322650 GGTTGTGTATTTTGCCACCATGAT 60.323 41.667 0.00 0.00 0.00 2.45
1913 4376 4.453177 TGTGTATTTTGCCACCATGATG 57.547 40.909 0.00 0.00 0.00 3.07
1914 4377 4.085009 TGTGTATTTTGCCACCATGATGA 58.915 39.130 0.00 0.00 0.00 2.92
1915 4378 4.158209 TGTGTATTTTGCCACCATGATGAG 59.842 41.667 0.00 0.00 0.00 2.90
1916 4379 4.158394 GTGTATTTTGCCACCATGATGAGT 59.842 41.667 0.00 0.00 0.00 3.41
1917 4380 4.771577 TGTATTTTGCCACCATGATGAGTT 59.228 37.500 0.00 0.00 0.00 3.01
1918 4381 4.895668 ATTTTGCCACCATGATGAGTTT 57.104 36.364 0.00 0.00 0.00 2.66
1919 4382 5.999205 ATTTTGCCACCATGATGAGTTTA 57.001 34.783 0.00 0.00 0.00 2.01
1920 4383 5.999205 TTTTGCCACCATGATGAGTTTAT 57.001 34.783 0.00 0.00 0.00 1.40
1921 4384 5.999205 TTTGCCACCATGATGAGTTTATT 57.001 34.783 0.00 0.00 0.00 1.40
1922 4385 7.473735 TTTTGCCACCATGATGAGTTTATTA 57.526 32.000 0.00 0.00 0.00 0.98
1923 4386 6.698008 TTGCCACCATGATGAGTTTATTAG 57.302 37.500 0.00 0.00 0.00 1.73
1924 4387 4.580167 TGCCACCATGATGAGTTTATTAGC 59.420 41.667 0.00 0.00 0.00 3.09
1925 4388 4.022849 GCCACCATGATGAGTTTATTAGCC 60.023 45.833 0.00 0.00 0.00 3.93
1926 4389 5.132502 CCACCATGATGAGTTTATTAGCCA 58.867 41.667 0.00 0.00 0.00 4.75
1927 4390 5.009010 CCACCATGATGAGTTTATTAGCCAC 59.991 44.000 0.00 0.00 0.00 5.01
1928 4391 5.824624 CACCATGATGAGTTTATTAGCCACT 59.175 40.000 0.00 0.00 0.00 4.00
1929 4392 6.319658 CACCATGATGAGTTTATTAGCCACTT 59.680 38.462 0.00 0.00 0.00 3.16
1930 4393 7.498900 CACCATGATGAGTTTATTAGCCACTTA 59.501 37.037 0.00 0.00 0.00 2.24
1931 4394 8.220559 ACCATGATGAGTTTATTAGCCACTTAT 58.779 33.333 0.00 0.00 0.00 1.73
1932 4395 9.071276 CCATGATGAGTTTATTAGCCACTTATT 57.929 33.333 0.00 0.00 0.00 1.40
1960 4423 8.682128 TTTTGTTAGTGTAGAGTTTGCTTTTG 57.318 30.769 0.00 0.00 0.00 2.44
1971 4434 2.202479 GCTTTTGCGATGCGGTCC 60.202 61.111 0.00 0.00 34.86 4.46
1972 4435 2.976840 GCTTTTGCGATGCGGTCCA 61.977 57.895 0.00 0.00 34.86 4.02
1973 4436 1.802636 CTTTTGCGATGCGGTCCAT 59.197 52.632 0.00 0.00 36.70 3.41
1974 4437 0.171007 CTTTTGCGATGCGGTCCATT 59.829 50.000 0.00 0.00 33.29 3.16
1975 4438 0.109365 TTTTGCGATGCGGTCCATTG 60.109 50.000 0.00 0.00 38.21 2.82
1976 4439 1.240641 TTTGCGATGCGGTCCATTGT 61.241 50.000 0.00 0.00 37.60 2.71
1977 4440 1.240641 TTGCGATGCGGTCCATTGTT 61.241 50.000 0.00 0.00 37.60 2.83
1978 4441 1.062525 GCGATGCGGTCCATTGTTC 59.937 57.895 0.00 0.00 37.60 3.18
1979 4442 1.643868 GCGATGCGGTCCATTGTTCA 61.644 55.000 0.00 0.00 37.60 3.18
1980 4443 0.374758 CGATGCGGTCCATTGTTCAG 59.625 55.000 0.00 0.00 33.29 3.02
1981 4444 1.453155 GATGCGGTCCATTGTTCAGT 58.547 50.000 0.00 0.00 33.29 3.41
1982 4445 1.812571 GATGCGGTCCATTGTTCAGTT 59.187 47.619 0.00 0.00 33.29 3.16
1983 4446 2.552599 TGCGGTCCATTGTTCAGTTA 57.447 45.000 0.00 0.00 0.00 2.24
1984 4447 2.422597 TGCGGTCCATTGTTCAGTTAG 58.577 47.619 0.00 0.00 0.00 2.34
1985 4448 1.130561 GCGGTCCATTGTTCAGTTAGC 59.869 52.381 0.00 0.00 0.00 3.09
1986 4449 2.699954 CGGTCCATTGTTCAGTTAGCT 58.300 47.619 0.00 0.00 0.00 3.32
1987 4450 3.074412 CGGTCCATTGTTCAGTTAGCTT 58.926 45.455 0.00 0.00 0.00 3.74
1988 4451 3.125316 CGGTCCATTGTTCAGTTAGCTTC 59.875 47.826 0.00 0.00 0.00 3.86
1989 4452 4.072131 GGTCCATTGTTCAGTTAGCTTCA 58.928 43.478 0.00 0.00 0.00 3.02
1990 4453 4.518970 GGTCCATTGTTCAGTTAGCTTCAA 59.481 41.667 0.00 0.00 0.00 2.69
1991 4454 5.009610 GGTCCATTGTTCAGTTAGCTTCAAA 59.990 40.000 0.00 0.00 0.00 2.69
1992 4455 6.460953 GGTCCATTGTTCAGTTAGCTTCAAAA 60.461 38.462 0.00 0.00 0.00 2.44
1993 4456 6.417930 GTCCATTGTTCAGTTAGCTTCAAAAC 59.582 38.462 0.00 0.00 0.00 2.43
1994 4457 5.691754 CCATTGTTCAGTTAGCTTCAAAACC 59.308 40.000 0.00 0.00 0.00 3.27
1995 4458 6.461509 CCATTGTTCAGTTAGCTTCAAAACCT 60.462 38.462 0.00 0.00 0.00 3.50
1996 4459 6.524101 TTGTTCAGTTAGCTTCAAAACCTT 57.476 33.333 0.00 0.00 0.00 3.50
1997 4460 6.524101 TGTTCAGTTAGCTTCAAAACCTTT 57.476 33.333 0.00 0.00 0.00 3.11
1998 4461 7.633193 TGTTCAGTTAGCTTCAAAACCTTTA 57.367 32.000 0.00 0.00 0.00 1.85
1999 4462 7.477494 TGTTCAGTTAGCTTCAAAACCTTTAC 58.523 34.615 0.00 0.00 0.00 2.01
2000 4463 7.338449 TGTTCAGTTAGCTTCAAAACCTTTACT 59.662 33.333 0.00 0.00 0.00 2.24
2001 4464 7.492352 TCAGTTAGCTTCAAAACCTTTACTC 57.508 36.000 0.00 0.00 0.00 2.59
2002 4465 7.280356 TCAGTTAGCTTCAAAACCTTTACTCT 58.720 34.615 0.00 0.00 0.00 3.24
2003 4466 8.426489 TCAGTTAGCTTCAAAACCTTTACTCTA 58.574 33.333 0.00 0.00 0.00 2.43
2004 4467 8.713271 CAGTTAGCTTCAAAACCTTTACTCTAG 58.287 37.037 0.00 0.00 0.00 2.43
2005 4468 7.878644 AGTTAGCTTCAAAACCTTTACTCTAGG 59.121 37.037 0.00 0.00 38.79 3.02
2007 4470 7.312415 AGCTTCAAAACCTTTACTCTAGGTA 57.688 36.000 0.00 0.00 45.17 3.08
2008 4471 7.387643 AGCTTCAAAACCTTTACTCTAGGTAG 58.612 38.462 0.00 0.00 45.17 3.18
2009 4472 7.016366 AGCTTCAAAACCTTTACTCTAGGTAGT 59.984 37.037 0.00 0.00 45.17 2.73
2010 4473 7.117956 GCTTCAAAACCTTTACTCTAGGTAGTG 59.882 40.741 0.00 0.00 45.17 2.74
2011 4474 7.607615 TCAAAACCTTTACTCTAGGTAGTGT 57.392 36.000 0.00 0.00 45.17 3.55
2012 4475 7.439381 TCAAAACCTTTACTCTAGGTAGTGTG 58.561 38.462 0.00 0.00 45.17 3.82
2013 4476 6.990908 AAACCTTTACTCTAGGTAGTGTGT 57.009 37.500 0.00 0.00 45.17 3.72
2014 4477 5.979288 ACCTTTACTCTAGGTAGTGTGTG 57.021 43.478 0.00 0.00 44.11 3.82
2015 4478 5.392125 ACCTTTACTCTAGGTAGTGTGTGT 58.608 41.667 0.00 0.00 44.11 3.72
2016 4479 6.546484 ACCTTTACTCTAGGTAGTGTGTGTA 58.454 40.000 0.00 0.00 44.11 2.90
2017 4480 6.432472 ACCTTTACTCTAGGTAGTGTGTGTAC 59.568 42.308 0.00 0.00 44.11 2.90
2018 4481 6.432162 CCTTTACTCTAGGTAGTGTGTGTACA 59.568 42.308 0.00 0.00 32.83 2.90
2019 4482 7.122353 CCTTTACTCTAGGTAGTGTGTGTACAT 59.878 40.741 0.00 0.00 39.39 2.29
2020 4483 9.170734 CTTTACTCTAGGTAGTGTGTGTACATA 57.829 37.037 0.00 0.00 39.39 2.29
2021 4484 8.728337 TTACTCTAGGTAGTGTGTGTACATAG 57.272 38.462 0.00 0.00 39.39 2.23
2022 4485 5.589452 ACTCTAGGTAGTGTGTGTACATAGC 59.411 44.000 0.00 0.00 39.39 2.97
2023 4486 5.503002 TCTAGGTAGTGTGTGTACATAGCA 58.497 41.667 0.00 0.00 39.39 3.49
2024 4487 6.127101 TCTAGGTAGTGTGTGTACATAGCAT 58.873 40.000 0.00 0.00 39.39 3.79
2025 4488 5.011090 AGGTAGTGTGTGTACATAGCATG 57.989 43.478 0.00 0.00 39.39 4.06
2026 4489 4.119862 GGTAGTGTGTGTACATAGCATGG 58.880 47.826 0.00 0.00 39.39 3.66
2027 4490 3.981071 AGTGTGTGTACATAGCATGGT 57.019 42.857 1.62 1.62 39.39 3.55
2028 4491 4.286297 AGTGTGTGTACATAGCATGGTT 57.714 40.909 1.12 0.00 39.39 3.67
2029 4492 4.002982 AGTGTGTGTACATAGCATGGTTG 58.997 43.478 1.12 4.18 39.39 3.77
2030 4493 4.000325 GTGTGTGTACATAGCATGGTTGA 59.000 43.478 1.12 0.00 39.39 3.18
2031 4494 4.000325 TGTGTGTACATAGCATGGTTGAC 59.000 43.478 1.12 0.00 33.60 3.18
2032 4495 4.000325 GTGTGTACATAGCATGGTTGACA 59.000 43.478 1.12 0.00 33.60 3.58
2033 4496 4.454161 GTGTGTACATAGCATGGTTGACAA 59.546 41.667 1.12 0.00 33.60 3.18
2034 4497 5.123820 GTGTGTACATAGCATGGTTGACAAT 59.876 40.000 1.12 0.00 33.60 2.71
2035 4498 5.709631 TGTGTACATAGCATGGTTGACAATT 59.290 36.000 1.12 0.00 33.60 2.32
2036 4499 6.029607 GTGTACATAGCATGGTTGACAATTG 58.970 40.000 1.12 3.24 33.60 2.32
2037 4500 4.724074 ACATAGCATGGTTGACAATTGG 57.276 40.909 10.83 0.00 33.60 3.16
2038 4501 4.088634 ACATAGCATGGTTGACAATTGGT 58.911 39.130 10.83 0.00 33.60 3.67
2039 4502 4.527816 ACATAGCATGGTTGACAATTGGTT 59.472 37.500 10.83 0.00 33.60 3.67
2040 4503 3.389925 AGCATGGTTGACAATTGGTTG 57.610 42.857 10.83 0.00 41.20 3.77
2041 4504 2.037511 AGCATGGTTGACAATTGGTTGG 59.962 45.455 10.83 0.00 39.70 3.77
2042 4505 2.871236 GCATGGTTGACAATTGGTTGGG 60.871 50.000 10.83 0.00 39.70 4.12
2043 4506 1.418334 TGGTTGACAATTGGTTGGGG 58.582 50.000 10.83 0.00 39.70 4.96
2044 4507 0.684535 GGTTGACAATTGGTTGGGGG 59.315 55.000 10.83 0.00 39.70 5.40
2045 4508 1.710816 GTTGACAATTGGTTGGGGGA 58.289 50.000 10.83 0.00 39.70 4.81
2046 4509 2.256306 GTTGACAATTGGTTGGGGGAT 58.744 47.619 10.83 0.00 39.70 3.85
2047 4510 1.935799 TGACAATTGGTTGGGGGATG 58.064 50.000 10.83 0.00 39.70 3.51
2048 4511 1.148867 TGACAATTGGTTGGGGGATGT 59.851 47.619 10.83 0.00 39.70 3.06
2049 4512 2.256306 GACAATTGGTTGGGGGATGTT 58.744 47.619 10.83 0.00 39.70 2.71
2050 4513 1.977129 ACAATTGGTTGGGGGATGTTG 59.023 47.619 10.83 0.00 39.70 3.33
2051 4514 2.255406 CAATTGGTTGGGGGATGTTGA 58.745 47.619 0.00 0.00 0.00 3.18
2052 4515 2.839425 CAATTGGTTGGGGGATGTTGAT 59.161 45.455 0.00 0.00 0.00 2.57
2053 4516 4.029520 CAATTGGTTGGGGGATGTTGATA 58.970 43.478 0.00 0.00 0.00 2.15
2054 4517 3.380471 TTGGTTGGGGGATGTTGATAG 57.620 47.619 0.00 0.00 0.00 2.08
2055 4518 1.064017 TGGTTGGGGGATGTTGATAGC 60.064 52.381 0.00 0.00 0.00 2.97
2056 4519 1.308998 GTTGGGGGATGTTGATAGCG 58.691 55.000 0.00 0.00 0.00 4.26
2057 4520 1.134220 GTTGGGGGATGTTGATAGCGA 60.134 52.381 0.00 0.00 0.00 4.93
2058 4521 0.758734 TGGGGGATGTTGATAGCGAG 59.241 55.000 0.00 0.00 0.00 5.03
2059 4522 0.759346 GGGGGATGTTGATAGCGAGT 59.241 55.000 0.00 0.00 0.00 4.18
2060 4523 1.141053 GGGGGATGTTGATAGCGAGTT 59.859 52.381 0.00 0.00 0.00 3.01
2061 4524 2.421529 GGGGGATGTTGATAGCGAGTTT 60.422 50.000 0.00 0.00 0.00 2.66
2062 4525 2.614057 GGGGATGTTGATAGCGAGTTTG 59.386 50.000 0.00 0.00 0.00 2.93
2063 4526 2.032178 GGGATGTTGATAGCGAGTTTGC 59.968 50.000 0.00 0.00 0.00 3.68
2065 4528 3.375299 GGATGTTGATAGCGAGTTTGCTT 59.625 43.478 0.00 0.00 44.46 3.91
2066 4529 4.494855 GGATGTTGATAGCGAGTTTGCTTC 60.495 45.833 0.00 0.00 44.46 3.86
2067 4530 3.398406 TGTTGATAGCGAGTTTGCTTCA 58.602 40.909 0.00 1.56 44.46 3.02
2068 4531 3.186409 TGTTGATAGCGAGTTTGCTTCAC 59.814 43.478 0.00 1.37 44.46 3.18
2069 4532 3.038788 TGATAGCGAGTTTGCTTCACA 57.961 42.857 0.00 0.00 44.46 3.58
2070 4533 3.599343 TGATAGCGAGTTTGCTTCACAT 58.401 40.909 0.00 0.00 44.46 3.21
2071 4534 4.754322 TGATAGCGAGTTTGCTTCACATA 58.246 39.130 0.00 0.00 44.46 2.29
2072 4535 5.359756 TGATAGCGAGTTTGCTTCACATAT 58.640 37.500 0.00 0.00 44.46 1.78
2073 4536 5.463392 TGATAGCGAGTTTGCTTCACATATC 59.537 40.000 0.00 0.00 44.46 1.63
2074 4537 2.939103 AGCGAGTTTGCTTCACATATCC 59.061 45.455 0.00 0.00 44.46 2.59
2075 4538 2.939103 GCGAGTTTGCTTCACATATCCT 59.061 45.455 0.00 0.00 0.00 3.24
2076 4539 3.375299 GCGAGTTTGCTTCACATATCCTT 59.625 43.478 0.00 0.00 0.00 3.36
2077 4540 4.728882 GCGAGTTTGCTTCACATATCCTTG 60.729 45.833 0.00 0.00 0.00 3.61
2078 4541 4.666237 GAGTTTGCTTCACATATCCTTGC 58.334 43.478 0.00 0.00 0.00 4.01
2079 4542 4.081406 AGTTTGCTTCACATATCCTTGCA 58.919 39.130 0.00 0.00 0.00 4.08
2080 4543 4.157289 AGTTTGCTTCACATATCCTTGCAG 59.843 41.667 0.00 0.00 0.00 4.41
2081 4544 2.646930 TGCTTCACATATCCTTGCAGG 58.353 47.619 0.00 0.00 36.46 4.85
2082 4545 1.952296 GCTTCACATATCCTTGCAGGG 59.048 52.381 8.96 8.96 35.59 4.45
2083 4546 2.421952 GCTTCACATATCCTTGCAGGGA 60.422 50.000 21.17 21.17 39.95 4.20
2084 4547 3.209410 CTTCACATATCCTTGCAGGGAC 58.791 50.000 21.34 0.00 38.30 4.46
2085 4548 2.195727 TCACATATCCTTGCAGGGACA 58.804 47.619 21.34 9.56 38.30 4.02
2086 4549 2.575735 TCACATATCCTTGCAGGGACAA 59.424 45.455 21.34 11.96 38.30 3.18
2087 4550 2.684881 CACATATCCTTGCAGGGACAAC 59.315 50.000 21.34 0.00 38.30 3.32
2088 4551 2.308570 ACATATCCTTGCAGGGACAACA 59.691 45.455 21.34 6.24 38.30 3.33
2089 4552 3.245229 ACATATCCTTGCAGGGACAACAA 60.245 43.478 21.34 4.00 38.30 2.83
2090 4553 1.620822 ATCCTTGCAGGGACAACAAC 58.379 50.000 21.34 0.00 38.30 3.32
2091 4554 0.467290 TCCTTGCAGGGACAACAACC 60.467 55.000 14.61 0.00 35.59 3.77
2092 4555 0.468029 CCTTGCAGGGACAACAACCT 60.468 55.000 9.80 0.00 37.66 3.50
2093 4556 1.402787 CTTGCAGGGACAACAACCTT 58.597 50.000 0.00 0.00 34.05 3.50
2094 4557 2.582052 CTTGCAGGGACAACAACCTTA 58.418 47.619 0.00 0.00 34.05 2.69
2095 4558 2.969821 TGCAGGGACAACAACCTTAT 57.030 45.000 0.00 0.00 34.05 1.73
2096 4559 2.513753 TGCAGGGACAACAACCTTATG 58.486 47.619 0.00 0.00 34.05 1.90
2097 4560 2.158534 TGCAGGGACAACAACCTTATGT 60.159 45.455 0.00 0.00 34.05 2.29
2098 4561 2.890945 GCAGGGACAACAACCTTATGTT 59.109 45.455 0.00 0.00 44.08 2.71
2108 4571 1.967319 ACCTTATGTTGGCTATGCGG 58.033 50.000 0.00 0.00 0.00 5.69
2109 4572 0.593128 CCTTATGTTGGCTATGCGGC 59.407 55.000 0.00 0.00 38.97 6.53
2110 4573 1.597742 CTTATGTTGGCTATGCGGCT 58.402 50.000 0.00 0.00 39.32 5.52
2111 4574 1.949525 CTTATGTTGGCTATGCGGCTT 59.050 47.619 0.00 0.00 39.32 4.35
2112 4575 2.051334 TATGTTGGCTATGCGGCTTT 57.949 45.000 0.00 0.00 39.32 3.51
2113 4576 0.740737 ATGTTGGCTATGCGGCTTTC 59.259 50.000 0.00 0.00 39.32 2.62
2114 4577 0.607762 TGTTGGCTATGCGGCTTTCA 60.608 50.000 0.00 0.00 39.32 2.69
2115 4578 0.179163 GTTGGCTATGCGGCTTTCAC 60.179 55.000 0.00 0.00 39.32 3.18
2116 4579 1.643868 TTGGCTATGCGGCTTTCACG 61.644 55.000 0.00 0.00 39.32 4.35
2117 4580 2.709475 GCTATGCGGCTTTCACGG 59.291 61.111 0.00 0.00 0.00 4.94
2118 4581 1.813753 GCTATGCGGCTTTCACGGA 60.814 57.895 0.00 0.00 35.80 4.69
2119 4582 1.366111 GCTATGCGGCTTTCACGGAA 61.366 55.000 0.00 0.00 34.79 4.30
2120 4583 1.299541 CTATGCGGCTTTCACGGAAT 58.700 50.000 0.00 0.00 34.79 3.01
2121 4584 1.670811 CTATGCGGCTTTCACGGAATT 59.329 47.619 0.00 0.00 34.79 2.17
2122 4585 1.745232 ATGCGGCTTTCACGGAATTA 58.255 45.000 0.00 0.00 34.79 1.40
2123 4586 0.800012 TGCGGCTTTCACGGAATTAC 59.200 50.000 0.00 0.00 0.00 1.89
2124 4587 0.800012 GCGGCTTTCACGGAATTACA 59.200 50.000 0.00 0.00 0.00 2.41
2125 4588 1.400494 GCGGCTTTCACGGAATTACAT 59.600 47.619 0.00 0.00 0.00 2.29
2126 4589 2.791158 GCGGCTTTCACGGAATTACATG 60.791 50.000 0.00 0.00 0.00 3.21
2127 4590 2.675844 CGGCTTTCACGGAATTACATGA 59.324 45.455 0.00 0.00 0.00 3.07
2128 4591 3.312421 CGGCTTTCACGGAATTACATGAT 59.688 43.478 0.00 0.00 0.00 2.45
2129 4592 4.201910 CGGCTTTCACGGAATTACATGATT 60.202 41.667 0.00 0.00 0.00 2.57
2130 4593 5.273944 GGCTTTCACGGAATTACATGATTC 58.726 41.667 0.00 0.00 35.71 2.52
2131 4594 5.066505 GGCTTTCACGGAATTACATGATTCT 59.933 40.000 0.00 0.00 36.50 2.40
2132 4595 6.404734 GGCTTTCACGGAATTACATGATTCTT 60.405 38.462 0.00 0.00 36.50 2.52
2133 4596 7.029563 GCTTTCACGGAATTACATGATTCTTT 58.970 34.615 0.00 0.00 36.50 2.52
2134 4597 8.181573 GCTTTCACGGAATTACATGATTCTTTA 58.818 33.333 0.00 0.00 36.50 1.85
2135 4598 9.490663 CTTTCACGGAATTACATGATTCTTTAC 57.509 33.333 0.00 0.00 36.50 2.01
2136 4599 7.548196 TCACGGAATTACATGATTCTTTACC 57.452 36.000 0.00 0.00 36.50 2.85
2137 4600 7.106890 TCACGGAATTACATGATTCTTTACCA 58.893 34.615 0.00 0.00 36.50 3.25
2138 4601 7.608376 TCACGGAATTACATGATTCTTTACCAA 59.392 33.333 0.00 0.00 36.50 3.67
2139 4602 8.240682 CACGGAATTACATGATTCTTTACCAAA 58.759 33.333 0.00 0.00 36.50 3.28
2140 4603 8.798402 ACGGAATTACATGATTCTTTACCAAAA 58.202 29.630 0.00 0.00 36.50 2.44
2141 4604 9.072294 CGGAATTACATGATTCTTTACCAAAAC 57.928 33.333 0.00 0.00 36.50 2.43
2142 4605 9.921637 GGAATTACATGATTCTTTACCAAAACA 57.078 29.630 0.00 0.00 36.50 2.83
2148 4611 8.558700 ACATGATTCTTTACCAAAACAAAATGC 58.441 29.630 0.00 0.00 0.00 3.56
2149 4612 8.557864 CATGATTCTTTACCAAAACAAAATGCA 58.442 29.630 0.00 0.00 0.00 3.96
2150 4613 8.674263 TGATTCTTTACCAAAACAAAATGCAT 57.326 26.923 0.00 0.00 0.00 3.96
2151 4614 9.118300 TGATTCTTTACCAAAACAAAATGCATT 57.882 25.926 5.99 5.99 0.00 3.56
2152 4615 9.949174 GATTCTTTACCAAAACAAAATGCATTT 57.051 25.926 18.99 18.99 0.00 2.32
2153 4616 9.949174 ATTCTTTACCAAAACAAAATGCATTTC 57.051 25.926 24.28 0.00 0.00 2.17
2154 4617 8.498054 TCTTTACCAAAACAAAATGCATTTCA 57.502 26.923 24.28 0.32 0.00 2.69
2155 4618 9.118300 TCTTTACCAAAACAAAATGCATTTCAT 57.882 25.926 24.28 12.98 36.87 2.57
2156 4619 9.384682 CTTTACCAAAACAAAATGCATTTCATC 57.615 29.630 24.28 0.00 33.40 2.92
2157 4620 8.674263 TTACCAAAACAAAATGCATTTCATCT 57.326 26.923 24.28 6.70 33.40 2.90
2158 4621 7.193377 ACCAAAACAAAATGCATTTCATCTC 57.807 32.000 24.28 0.00 33.40 2.75
2159 4622 6.205270 ACCAAAACAAAATGCATTTCATCTCC 59.795 34.615 24.28 0.00 33.40 3.71
2160 4623 6.428771 CCAAAACAAAATGCATTTCATCTCCT 59.571 34.615 24.28 4.82 33.40 3.69
2161 4624 7.295201 CAAAACAAAATGCATTTCATCTCCTG 58.705 34.615 24.28 18.19 33.40 3.86
2162 4625 4.501071 ACAAAATGCATTTCATCTCCTGC 58.499 39.130 24.28 0.00 33.40 4.85
2163 4626 3.431922 AAATGCATTTCATCTCCTGCG 57.568 42.857 18.99 0.00 37.44 5.18
2164 4627 0.666913 ATGCATTTCATCTCCTGCGC 59.333 50.000 0.00 0.00 37.44 6.09
2165 4628 0.677414 TGCATTTCATCTCCTGCGCA 60.677 50.000 10.98 10.98 37.44 6.09
2166 4629 0.029035 GCATTTCATCTCCTGCGCAG 59.971 55.000 30.52 30.52 0.00 5.18
2199 4662 4.966249 CATGTATGCACTCACTCTGTTTG 58.034 43.478 0.00 0.00 0.00 2.93
2200 4663 3.402110 TGTATGCACTCACTCTGTTTGG 58.598 45.455 0.00 0.00 0.00 3.28
2201 4664 2.645838 ATGCACTCACTCTGTTTGGT 57.354 45.000 0.00 0.00 0.00 3.67
2202 4665 1.953559 TGCACTCACTCTGTTTGGTC 58.046 50.000 0.00 0.00 0.00 4.02
2203 4666 1.486310 TGCACTCACTCTGTTTGGTCT 59.514 47.619 0.00 0.00 0.00 3.85
2204 4667 2.698274 TGCACTCACTCTGTTTGGTCTA 59.302 45.455 0.00 0.00 0.00 2.59
2205 4668 3.060602 GCACTCACTCTGTTTGGTCTAC 58.939 50.000 0.00 0.00 0.00 2.59
2206 4669 3.243907 GCACTCACTCTGTTTGGTCTACT 60.244 47.826 0.00 0.00 0.00 2.57
2207 4670 4.551388 CACTCACTCTGTTTGGTCTACTC 58.449 47.826 0.00 0.00 0.00 2.59
2208 4671 4.279671 CACTCACTCTGTTTGGTCTACTCT 59.720 45.833 0.00 0.00 0.00 3.24
2209 4672 5.473846 CACTCACTCTGTTTGGTCTACTCTA 59.526 44.000 0.00 0.00 0.00 2.43
2210 4673 5.474189 ACTCACTCTGTTTGGTCTACTCTAC 59.526 44.000 0.00 0.00 0.00 2.59
2211 4674 5.382616 TCACTCTGTTTGGTCTACTCTACA 58.617 41.667 0.00 0.00 0.00 2.74
2212 4675 5.831525 TCACTCTGTTTGGTCTACTCTACAA 59.168 40.000 0.00 0.00 0.00 2.41
2213 4676 6.322969 TCACTCTGTTTGGTCTACTCTACAAA 59.677 38.462 0.00 0.00 0.00 2.83
2214 4677 6.642950 CACTCTGTTTGGTCTACTCTACAAAG 59.357 42.308 0.00 0.00 33.94 2.77
2215 4678 6.097915 TCTGTTTGGTCTACTCTACAAAGG 57.902 41.667 0.00 0.00 33.94 3.11
2216 4679 4.638304 TGTTTGGTCTACTCTACAAAGGC 58.362 43.478 0.00 0.00 33.94 4.35
2217 4680 3.975168 TTGGTCTACTCTACAAAGGCC 57.025 47.619 0.00 0.00 35.49 5.19
2218 4681 1.822990 TGGTCTACTCTACAAAGGCCG 59.177 52.381 0.00 0.00 37.85 6.13
2219 4682 1.136500 GGTCTACTCTACAAAGGCCGG 59.864 57.143 0.00 0.00 0.00 6.13
2220 4683 2.097825 GTCTACTCTACAAAGGCCGGA 58.902 52.381 5.05 0.00 0.00 5.14
2221 4684 2.099427 GTCTACTCTACAAAGGCCGGAG 59.901 54.545 5.05 2.38 0.00 4.63
2244 4707 4.929781 GTCGATAAGACGGATAAGTTGGT 58.070 43.478 0.00 0.00 40.43 3.67
2245 4708 5.346522 GTCGATAAGACGGATAAGTTGGTT 58.653 41.667 0.00 0.00 40.43 3.67
2246 4709 5.231568 GTCGATAAGACGGATAAGTTGGTTG 59.768 44.000 0.00 0.00 40.43 3.77
2247 4710 4.025979 CGATAAGACGGATAAGTTGGTTGC 60.026 45.833 0.00 0.00 0.00 4.17
2248 4711 2.851263 AGACGGATAAGTTGGTTGCA 57.149 45.000 0.00 0.00 0.00 4.08
2249 4712 2.423577 AGACGGATAAGTTGGTTGCAC 58.576 47.619 0.00 0.00 0.00 4.57
2250 4713 2.038557 AGACGGATAAGTTGGTTGCACT 59.961 45.455 0.00 0.00 0.00 4.40
2251 4714 2.812011 GACGGATAAGTTGGTTGCACTT 59.188 45.455 0.00 0.00 38.13 3.16
2252 4715 2.552315 ACGGATAAGTTGGTTGCACTTG 59.448 45.455 0.00 0.00 35.95 3.16
2253 4716 2.095263 CGGATAAGTTGGTTGCACTTGG 60.095 50.000 0.00 0.00 35.95 3.61
2254 4717 2.890945 GGATAAGTTGGTTGCACTTGGT 59.109 45.455 0.00 0.00 35.95 3.67
2255 4718 3.305335 GGATAAGTTGGTTGCACTTGGTG 60.305 47.826 0.00 0.00 35.95 4.17
2256 4719 0.823460 AAGTTGGTTGCACTTGGTGG 59.177 50.000 0.00 0.00 33.04 4.61
2257 4720 1.042559 AGTTGGTTGCACTTGGTGGG 61.043 55.000 0.00 0.00 33.64 4.61
2259 4722 3.615709 GGTTGCACTTGGTGGGCC 61.616 66.667 0.00 0.00 46.54 5.80
2260 4723 3.615709 GTTGCACTTGGTGGGCCC 61.616 66.667 17.59 17.59 46.54 5.80
2261 4724 3.831637 TTGCACTTGGTGGGCCCT 61.832 61.111 25.70 0.00 46.54 5.19
2262 4725 3.387609 TTGCACTTGGTGGGCCCTT 62.388 57.895 25.70 0.00 46.54 3.95
2263 4726 2.524148 GCACTTGGTGGGCCCTTT 60.524 61.111 25.70 0.00 39.71 3.11
2264 4727 2.871253 GCACTTGGTGGGCCCTTTG 61.871 63.158 25.70 11.54 39.71 2.77
2265 4728 2.201210 ACTTGGTGGGCCCTTTGG 59.799 61.111 25.70 11.80 0.00 3.28
2266 4729 2.201210 CTTGGTGGGCCCTTTGGT 59.799 61.111 25.70 0.00 0.00 3.67
2267 4730 2.123077 TTGGTGGGCCCTTTGGTG 60.123 61.111 25.70 0.00 0.00 4.17
2268 4731 3.765257 TTGGTGGGCCCTTTGGTGG 62.765 63.158 25.70 0.00 0.00 4.61
2275 4738 3.451894 CCCTTTGGTGGGCGATGC 61.452 66.667 0.00 0.00 40.84 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 121 5.359576 AGAGGAGAGACAACATACATCTCAC 59.640 44.000 3.52 0.00 41.18 3.51
546 548 5.928264 CCCAATCCTTTTTGTAGCAAAGAAG 59.072 40.000 0.00 0.00 33.69 2.85
548 550 4.262420 GCCCAATCCTTTTTGTAGCAAAGA 60.262 41.667 0.00 0.00 33.69 2.52
721 723 6.072286 TCGTCCTTTCGATAAGTAAGAGTGTT 60.072 38.462 0.00 0.00 34.85 3.32
745 747 5.125739 CCACAAGTATAGGGGATCTATCGTC 59.874 48.000 0.00 0.00 39.30 4.20
886 889 1.315257 GGCTTACACCATGCACCCTG 61.315 60.000 0.00 0.00 0.00 4.45
955 958 6.092122 CGTAATGTTGCAAATCTCACTCCTTA 59.908 38.462 0.00 0.00 0.00 2.69
969 972 2.343101 GTGTAGCCTCGTAATGTTGCA 58.657 47.619 0.00 0.00 0.00 4.08
1120 1124 9.793252 ATTTGCTGATCTTATTACATGTTGAAC 57.207 29.630 2.30 0.00 0.00 3.18
1224 1228 1.612726 GCCAGAAGGTTGCTGATCAGT 60.613 52.381 23.38 2.60 35.39 3.41
1499 1515 6.127897 GGAATCATCTCCGAAAGTTCACAAAT 60.128 38.462 0.00 0.00 0.00 2.32
1511 1527 4.286707 TCTAACCTTGGAATCATCTCCGA 58.713 43.478 0.00 0.00 38.44 4.55
1512 1528 4.672587 TCTAACCTTGGAATCATCTCCG 57.327 45.455 0.00 0.00 38.44 4.63
1517 1533 6.973642 TCCTGAAATCTAACCTTGGAATCAT 58.026 36.000 0.00 0.00 0.00 2.45
1518 1534 6.387192 TCCTGAAATCTAACCTTGGAATCA 57.613 37.500 0.00 0.00 0.00 2.57
1519 1535 7.112779 TCTTCCTGAAATCTAACCTTGGAATC 58.887 38.462 0.00 0.00 32.80 2.52
1520 1536 7.032598 TCTTCCTGAAATCTAACCTTGGAAT 57.967 36.000 0.00 0.00 32.80 3.01
1522 1538 6.418101 CATCTTCCTGAAATCTAACCTTGGA 58.582 40.000 0.00 0.00 0.00 3.53
1523 1539 5.067023 GCATCTTCCTGAAATCTAACCTTGG 59.933 44.000 0.00 0.00 0.00 3.61
1526 1542 5.441718 TGCATCTTCCTGAAATCTAACCT 57.558 39.130 0.00 0.00 0.00 3.50
1527 1543 5.009410 CCATGCATCTTCCTGAAATCTAACC 59.991 44.000 0.00 0.00 0.00 2.85
1528 1544 5.591877 ACCATGCATCTTCCTGAAATCTAAC 59.408 40.000 0.00 0.00 0.00 2.34
1529 1545 5.759059 ACCATGCATCTTCCTGAAATCTAA 58.241 37.500 0.00 0.00 0.00 2.10
1530 1546 5.378230 ACCATGCATCTTCCTGAAATCTA 57.622 39.130 0.00 0.00 0.00 1.98
1537 2255 1.108776 CCCAACCATGCATCTTCCTG 58.891 55.000 0.00 0.00 0.00 3.86
1646 2364 6.313519 AGCCCTACAGAAAGAAATATCACA 57.686 37.500 0.00 0.00 0.00 3.58
1678 2396 8.883731 CAATTCATTTCACACTACTAGGTTAGG 58.116 37.037 0.00 0.00 0.00 2.69
1680 2398 8.100791 AGCAATTCATTTCACACTACTAGGTTA 58.899 33.333 0.00 0.00 0.00 2.85
1681 2399 6.942576 AGCAATTCATTTCACACTACTAGGTT 59.057 34.615 0.00 0.00 0.00 3.50
1682 2400 6.476378 AGCAATTCATTTCACACTACTAGGT 58.524 36.000 0.00 0.00 0.00 3.08
1762 2481 2.233431 AGAGCTTGTTGTTTTGGTGCAA 59.767 40.909 0.00 0.00 0.00 4.08
1811 4274 0.600255 GGTTATCGACAGGGGCATCG 60.600 60.000 0.00 0.00 39.72 3.84
1873 4336 1.005924 CAACCAATTGCTACCCTCCCT 59.994 52.381 0.00 0.00 0.00 4.20
1878 4341 5.400066 AAATACACAACCAATTGCTACCC 57.600 39.130 0.00 0.00 39.66 3.69
1902 4365 4.022849 GGCTAATAAACTCATCATGGTGGC 60.023 45.833 6.03 0.00 0.00 5.01
1903 4366 5.009010 GTGGCTAATAAACTCATCATGGTGG 59.991 44.000 6.03 0.00 0.00 4.61
1904 4367 5.824624 AGTGGCTAATAAACTCATCATGGTG 59.175 40.000 0.00 0.00 0.00 4.17
1905 4368 6.006275 AGTGGCTAATAAACTCATCATGGT 57.994 37.500 0.00 0.00 0.00 3.55
1906 4369 6.949352 AAGTGGCTAATAAACTCATCATGG 57.051 37.500 0.00 0.00 0.00 3.66
1934 4397 9.134734 CAAAAGCAAACTCTACACTAACAAAAA 57.865 29.630 0.00 0.00 0.00 1.94
1935 4398 7.274686 GCAAAAGCAAACTCTACACTAACAAAA 59.725 33.333 0.00 0.00 0.00 2.44
1936 4399 6.750039 GCAAAAGCAAACTCTACACTAACAAA 59.250 34.615 0.00 0.00 0.00 2.83
1937 4400 6.262601 GCAAAAGCAAACTCTACACTAACAA 58.737 36.000 0.00 0.00 0.00 2.83
1938 4401 5.503357 CGCAAAAGCAAACTCTACACTAACA 60.503 40.000 0.00 0.00 0.00 2.41
1939 4402 4.904154 CGCAAAAGCAAACTCTACACTAAC 59.096 41.667 0.00 0.00 0.00 2.34
1940 4403 4.812091 TCGCAAAAGCAAACTCTACACTAA 59.188 37.500 0.00 0.00 0.00 2.24
1941 4404 4.373527 TCGCAAAAGCAAACTCTACACTA 58.626 39.130 0.00 0.00 0.00 2.74
1942 4405 3.202906 TCGCAAAAGCAAACTCTACACT 58.797 40.909 0.00 0.00 0.00 3.55
1943 4406 3.602390 TCGCAAAAGCAAACTCTACAC 57.398 42.857 0.00 0.00 0.00 2.90
1944 4407 3.609175 GCATCGCAAAAGCAAACTCTACA 60.609 43.478 0.00 0.00 0.00 2.74
1945 4408 2.911102 GCATCGCAAAAGCAAACTCTAC 59.089 45.455 0.00 0.00 0.00 2.59
1946 4409 2.412716 CGCATCGCAAAAGCAAACTCTA 60.413 45.455 0.00 0.00 0.00 2.43
1947 4410 1.664016 CGCATCGCAAAAGCAAACTCT 60.664 47.619 0.00 0.00 0.00 3.24
1948 4411 0.704551 CGCATCGCAAAAGCAAACTC 59.295 50.000 0.00 0.00 0.00 3.01
1949 4412 0.664166 CCGCATCGCAAAAGCAAACT 60.664 50.000 0.00 0.00 0.00 2.66
1950 4413 0.939106 ACCGCATCGCAAAAGCAAAC 60.939 50.000 0.00 0.00 0.00 2.93
1951 4414 0.662970 GACCGCATCGCAAAAGCAAA 60.663 50.000 0.00 0.00 0.00 3.68
1952 4415 1.081509 GACCGCATCGCAAAAGCAA 60.082 52.632 0.00 0.00 0.00 3.91
1953 4416 2.560861 GACCGCATCGCAAAAGCA 59.439 55.556 0.00 0.00 0.00 3.91
1954 4417 2.202479 GGACCGCATCGCAAAAGC 60.202 61.111 0.00 0.00 0.00 3.51
1955 4418 0.171007 AATGGACCGCATCGCAAAAG 59.829 50.000 0.00 0.00 0.00 2.27
1956 4419 0.109365 CAATGGACCGCATCGCAAAA 60.109 50.000 0.00 0.00 0.00 2.44
1957 4420 1.240641 ACAATGGACCGCATCGCAAA 61.241 50.000 0.00 0.00 0.00 3.68
1958 4421 1.240641 AACAATGGACCGCATCGCAA 61.241 50.000 0.00 0.00 0.00 4.85
1959 4422 1.643868 GAACAATGGACCGCATCGCA 61.644 55.000 0.00 0.00 0.00 5.10
1960 4423 1.062525 GAACAATGGACCGCATCGC 59.937 57.895 0.00 0.00 0.00 4.58
1961 4424 0.374758 CTGAACAATGGACCGCATCG 59.625 55.000 0.00 0.00 0.00 3.84
1962 4425 1.453155 ACTGAACAATGGACCGCATC 58.547 50.000 0.00 0.00 0.00 3.91
1963 4426 1.909700 AACTGAACAATGGACCGCAT 58.090 45.000 0.00 0.00 0.00 4.73
1964 4427 2.422597 CTAACTGAACAATGGACCGCA 58.577 47.619 0.00 0.00 0.00 5.69
1965 4428 1.130561 GCTAACTGAACAATGGACCGC 59.869 52.381 0.00 0.00 0.00 5.68
1966 4429 2.699954 AGCTAACTGAACAATGGACCG 58.300 47.619 0.00 0.00 0.00 4.79
1967 4430 4.072131 TGAAGCTAACTGAACAATGGACC 58.928 43.478 0.00 0.00 0.00 4.46
1968 4431 5.689383 TTGAAGCTAACTGAACAATGGAC 57.311 39.130 0.00 0.00 0.00 4.02
1969 4432 6.460953 GGTTTTGAAGCTAACTGAACAATGGA 60.461 38.462 0.00 0.00 0.00 3.41
1970 4433 5.691754 GGTTTTGAAGCTAACTGAACAATGG 59.308 40.000 0.00 0.00 0.00 3.16
1971 4434 6.507023 AGGTTTTGAAGCTAACTGAACAATG 58.493 36.000 0.00 0.00 37.49 2.82
1972 4435 6.715347 AGGTTTTGAAGCTAACTGAACAAT 57.285 33.333 0.00 0.00 37.49 2.71
1973 4436 6.524101 AAGGTTTTGAAGCTAACTGAACAA 57.476 33.333 0.00 0.00 38.49 2.83
1974 4437 6.524101 AAAGGTTTTGAAGCTAACTGAACA 57.476 33.333 0.00 0.00 38.49 3.18
1975 4438 7.704271 AGTAAAGGTTTTGAAGCTAACTGAAC 58.296 34.615 0.00 0.00 38.49 3.18
1976 4439 7.773690 AGAGTAAAGGTTTTGAAGCTAACTGAA 59.226 33.333 10.58 0.00 38.49 3.02
1977 4440 7.280356 AGAGTAAAGGTTTTGAAGCTAACTGA 58.720 34.615 10.58 0.00 38.49 3.41
1978 4441 7.497925 AGAGTAAAGGTTTTGAAGCTAACTG 57.502 36.000 10.58 0.00 38.49 3.16
1979 4442 7.878644 CCTAGAGTAAAGGTTTTGAAGCTAACT 59.121 37.037 0.00 7.23 38.49 2.24
1980 4443 7.660617 ACCTAGAGTAAAGGTTTTGAAGCTAAC 59.339 37.037 0.00 0.00 45.26 2.34
1981 4444 7.742767 ACCTAGAGTAAAGGTTTTGAAGCTAA 58.257 34.615 0.00 0.00 45.26 3.09
1982 4445 7.312415 ACCTAGAGTAAAGGTTTTGAAGCTA 57.688 36.000 0.00 0.00 45.26 3.32
1983 4446 6.189036 ACCTAGAGTAAAGGTTTTGAAGCT 57.811 37.500 0.00 0.00 45.26 3.74
1984 4447 7.117956 CACTACCTAGAGTAAAGGTTTTGAAGC 59.882 40.741 0.00 0.00 45.26 3.86
1985 4448 8.148999 ACACTACCTAGAGTAAAGGTTTTGAAG 58.851 37.037 0.00 0.00 45.26 3.02
1986 4449 7.929785 CACACTACCTAGAGTAAAGGTTTTGAA 59.070 37.037 0.00 0.00 45.26 2.69
1987 4450 7.070322 ACACACTACCTAGAGTAAAGGTTTTGA 59.930 37.037 0.00 0.00 45.26 2.69
1988 4451 7.170998 CACACACTACCTAGAGTAAAGGTTTTG 59.829 40.741 0.00 1.40 45.26 2.44
1989 4452 7.147602 ACACACACTACCTAGAGTAAAGGTTTT 60.148 37.037 0.00 0.00 45.26 2.43
1990 4453 6.325804 ACACACACTACCTAGAGTAAAGGTTT 59.674 38.462 0.00 0.00 45.26 3.27
1991 4454 5.837438 ACACACACTACCTAGAGTAAAGGTT 59.163 40.000 0.00 0.00 45.26 3.50
1993 4456 5.979288 ACACACACTACCTAGAGTAAAGG 57.021 43.478 0.00 0.00 40.20 3.11
1994 4457 7.444629 TGTACACACACTACCTAGAGTAAAG 57.555 40.000 0.00 0.00 0.00 1.85
1995 4458 9.170734 CTATGTACACACACTACCTAGAGTAAA 57.829 37.037 0.00 0.00 37.54 2.01
1996 4459 7.281774 GCTATGTACACACACTACCTAGAGTAA 59.718 40.741 0.00 0.00 37.54 2.24
1997 4460 6.765036 GCTATGTACACACACTACCTAGAGTA 59.235 42.308 0.00 0.00 37.54 2.59
1998 4461 5.589452 GCTATGTACACACACTACCTAGAGT 59.411 44.000 0.00 0.00 37.54 3.24
1999 4462 5.589050 TGCTATGTACACACACTACCTAGAG 59.411 44.000 0.00 0.00 37.54 2.43
2000 4463 5.503002 TGCTATGTACACACACTACCTAGA 58.497 41.667 0.00 0.00 37.54 2.43
2001 4464 5.830000 TGCTATGTACACACACTACCTAG 57.170 43.478 0.00 0.00 37.54 3.02
2002 4465 5.068591 CCATGCTATGTACACACACTACCTA 59.931 44.000 0.00 0.00 37.54 3.08
2003 4466 4.141937 CCATGCTATGTACACACACTACCT 60.142 45.833 0.00 0.00 37.54 3.08
2004 4467 4.119862 CCATGCTATGTACACACACTACC 58.880 47.826 0.00 0.00 37.54 3.18
2005 4468 4.755411 ACCATGCTATGTACACACACTAC 58.245 43.478 0.00 0.00 37.54 2.73
2006 4469 5.046950 TCAACCATGCTATGTACACACACTA 60.047 40.000 0.00 0.00 37.54 2.74
2007 4470 3.981071 ACCATGCTATGTACACACACT 57.019 42.857 0.00 0.00 37.54 3.55
2008 4471 4.000325 TCAACCATGCTATGTACACACAC 59.000 43.478 0.00 0.00 37.54 3.82
2009 4472 4.000325 GTCAACCATGCTATGTACACACA 59.000 43.478 0.00 0.00 39.52 3.72
2010 4473 4.000325 TGTCAACCATGCTATGTACACAC 59.000 43.478 0.00 0.00 0.00 3.82
2011 4474 4.278975 TGTCAACCATGCTATGTACACA 57.721 40.909 0.00 0.00 0.00 3.72
2012 4475 5.818136 ATTGTCAACCATGCTATGTACAC 57.182 39.130 0.00 0.00 0.00 2.90
2013 4476 5.125257 CCAATTGTCAACCATGCTATGTACA 59.875 40.000 4.43 0.00 0.00 2.90
2014 4477 5.125417 ACCAATTGTCAACCATGCTATGTAC 59.875 40.000 4.43 0.00 0.00 2.90
2015 4478 5.260424 ACCAATTGTCAACCATGCTATGTA 58.740 37.500 4.43 0.00 0.00 2.29
2016 4479 4.088634 ACCAATTGTCAACCATGCTATGT 58.911 39.130 4.43 0.00 0.00 2.29
2017 4480 4.724074 ACCAATTGTCAACCATGCTATG 57.276 40.909 4.43 0.00 0.00 2.23
2018 4481 4.081531 CCAACCAATTGTCAACCATGCTAT 60.082 41.667 4.43 0.00 33.60 2.97
2019 4482 3.257873 CCAACCAATTGTCAACCATGCTA 59.742 43.478 4.43 0.00 33.60 3.49
2020 4483 2.037511 CCAACCAATTGTCAACCATGCT 59.962 45.455 4.43 0.00 33.60 3.79
2021 4484 2.415776 CCAACCAATTGTCAACCATGC 58.584 47.619 4.43 0.00 33.60 4.06
2022 4485 2.289569 CCCCAACCAATTGTCAACCATG 60.290 50.000 4.43 0.00 33.60 3.66
2023 4486 1.977129 CCCCAACCAATTGTCAACCAT 59.023 47.619 4.43 0.00 33.60 3.55
2024 4487 1.418334 CCCCAACCAATTGTCAACCA 58.582 50.000 4.43 0.00 33.60 3.67
2025 4488 0.684535 CCCCCAACCAATTGTCAACC 59.315 55.000 4.43 0.00 33.60 3.77
2026 4489 1.710816 TCCCCCAACCAATTGTCAAC 58.289 50.000 4.43 0.00 33.60 3.18
2027 4490 2.255406 CATCCCCCAACCAATTGTCAA 58.745 47.619 4.43 0.00 33.60 3.18
2028 4491 1.148867 ACATCCCCCAACCAATTGTCA 59.851 47.619 4.43 0.00 33.60 3.58
2029 4492 1.937191 ACATCCCCCAACCAATTGTC 58.063 50.000 4.43 0.00 33.60 3.18
2030 4493 1.977129 CAACATCCCCCAACCAATTGT 59.023 47.619 4.43 0.00 33.60 2.71
2031 4494 2.255406 TCAACATCCCCCAACCAATTG 58.745 47.619 0.00 0.00 35.40 2.32
2032 4495 2.711895 TCAACATCCCCCAACCAATT 57.288 45.000 0.00 0.00 0.00 2.32
2033 4496 2.946791 ATCAACATCCCCCAACCAAT 57.053 45.000 0.00 0.00 0.00 3.16
2034 4497 2.622977 GCTATCAACATCCCCCAACCAA 60.623 50.000 0.00 0.00 0.00 3.67
2035 4498 1.064017 GCTATCAACATCCCCCAACCA 60.064 52.381 0.00 0.00 0.00 3.67
2036 4499 1.692411 GCTATCAACATCCCCCAACC 58.308 55.000 0.00 0.00 0.00 3.77
2037 4500 1.134220 TCGCTATCAACATCCCCCAAC 60.134 52.381 0.00 0.00 0.00 3.77
2038 4501 1.140852 CTCGCTATCAACATCCCCCAA 59.859 52.381 0.00 0.00 0.00 4.12
2039 4502 0.758734 CTCGCTATCAACATCCCCCA 59.241 55.000 0.00 0.00 0.00 4.96
2040 4503 0.759346 ACTCGCTATCAACATCCCCC 59.241 55.000 0.00 0.00 0.00 5.40
2041 4504 2.614057 CAAACTCGCTATCAACATCCCC 59.386 50.000 0.00 0.00 0.00 4.81
2042 4505 2.032178 GCAAACTCGCTATCAACATCCC 59.968 50.000 0.00 0.00 0.00 3.85
2043 4506 2.939103 AGCAAACTCGCTATCAACATCC 59.061 45.455 0.00 0.00 41.55 3.51
2044 4507 4.093408 TGAAGCAAACTCGCTATCAACATC 59.907 41.667 0.00 0.00 42.89 3.06
2045 4508 4.002982 TGAAGCAAACTCGCTATCAACAT 58.997 39.130 0.00 0.00 42.89 2.71
2046 4509 3.186409 GTGAAGCAAACTCGCTATCAACA 59.814 43.478 0.00 0.00 42.89 3.33
2047 4510 3.186409 TGTGAAGCAAACTCGCTATCAAC 59.814 43.478 0.00 0.00 42.89 3.18
2048 4511 3.398406 TGTGAAGCAAACTCGCTATCAA 58.602 40.909 0.00 0.00 42.89 2.57
2049 4512 3.038788 TGTGAAGCAAACTCGCTATCA 57.961 42.857 0.00 0.00 42.89 2.15
2050 4513 5.107298 GGATATGTGAAGCAAACTCGCTATC 60.107 44.000 0.00 0.00 42.89 2.08
2051 4514 4.752101 GGATATGTGAAGCAAACTCGCTAT 59.248 41.667 0.00 0.00 42.89 2.97
2052 4515 4.119862 GGATATGTGAAGCAAACTCGCTA 58.880 43.478 0.00 0.00 42.89 4.26
2053 4516 2.939103 GGATATGTGAAGCAAACTCGCT 59.061 45.455 0.00 0.00 46.67 4.93
2054 4517 2.939103 AGGATATGTGAAGCAAACTCGC 59.061 45.455 0.00 0.00 0.00 5.03
2055 4518 4.728882 GCAAGGATATGTGAAGCAAACTCG 60.729 45.833 0.00 0.00 0.00 4.18
2056 4519 4.156556 TGCAAGGATATGTGAAGCAAACTC 59.843 41.667 0.00 0.00 0.00 3.01
2057 4520 4.081406 TGCAAGGATATGTGAAGCAAACT 58.919 39.130 0.00 0.00 0.00 2.66
2058 4521 4.418392 CTGCAAGGATATGTGAAGCAAAC 58.582 43.478 0.00 0.00 0.00 2.93
2059 4522 4.707030 CTGCAAGGATATGTGAAGCAAA 57.293 40.909 0.00 0.00 0.00 3.68
2074 4537 1.402787 AAGGTTGTTGTCCCTGCAAG 58.597 50.000 0.00 0.00 0.00 4.01
2075 4538 2.738587 TAAGGTTGTTGTCCCTGCAA 57.261 45.000 0.00 0.00 0.00 4.08
2076 4539 2.158534 ACATAAGGTTGTTGTCCCTGCA 60.159 45.455 0.00 0.00 0.00 4.41
2077 4540 2.514803 ACATAAGGTTGTTGTCCCTGC 58.485 47.619 0.00 0.00 0.00 4.85
2088 4551 2.297701 CCGCATAGCCAACATAAGGTT 58.702 47.619 0.00 0.00 41.47 3.50
2089 4552 1.967319 CCGCATAGCCAACATAAGGT 58.033 50.000 0.00 0.00 0.00 3.50
2090 4553 0.593128 GCCGCATAGCCAACATAAGG 59.407 55.000 0.00 0.00 0.00 2.69
2091 4554 1.597742 AGCCGCATAGCCAACATAAG 58.402 50.000 0.00 0.00 0.00 1.73
2092 4555 2.051334 AAGCCGCATAGCCAACATAA 57.949 45.000 0.00 0.00 0.00 1.90
2093 4556 1.946768 GAAAGCCGCATAGCCAACATA 59.053 47.619 0.00 0.00 0.00 2.29
2094 4557 0.740737 GAAAGCCGCATAGCCAACAT 59.259 50.000 0.00 0.00 0.00 2.71
2095 4558 0.607762 TGAAAGCCGCATAGCCAACA 60.608 50.000 0.00 0.00 0.00 3.33
2096 4559 0.179163 GTGAAAGCCGCATAGCCAAC 60.179 55.000 0.00 0.00 0.00 3.77
2097 4560 1.643868 CGTGAAAGCCGCATAGCCAA 61.644 55.000 0.00 0.00 0.00 4.52
2098 4561 2.106074 CGTGAAAGCCGCATAGCCA 61.106 57.895 0.00 0.00 0.00 4.75
2099 4562 2.709475 CGTGAAAGCCGCATAGCC 59.291 61.111 0.00 0.00 0.00 3.93
2100 4563 1.366111 TTCCGTGAAAGCCGCATAGC 61.366 55.000 0.00 0.00 0.00 2.97
2101 4564 1.299541 ATTCCGTGAAAGCCGCATAG 58.700 50.000 0.00 0.00 0.00 2.23
2102 4565 1.745232 AATTCCGTGAAAGCCGCATA 58.255 45.000 0.00 0.00 0.00 3.14
2103 4566 1.400494 GTAATTCCGTGAAAGCCGCAT 59.600 47.619 0.00 0.00 0.00 4.73
2104 4567 0.800012 GTAATTCCGTGAAAGCCGCA 59.200 50.000 0.00 0.00 0.00 5.69
2105 4568 0.800012 TGTAATTCCGTGAAAGCCGC 59.200 50.000 0.00 0.00 0.00 6.53
2106 4569 2.675844 TCATGTAATTCCGTGAAAGCCG 59.324 45.455 0.00 0.00 0.00 5.52
2107 4570 4.900635 ATCATGTAATTCCGTGAAAGCC 57.099 40.909 0.00 0.00 34.24 4.35
2108 4571 6.124088 AGAATCATGTAATTCCGTGAAAGC 57.876 37.500 0.00 0.00 36.49 3.51
2109 4572 9.490663 GTAAAGAATCATGTAATTCCGTGAAAG 57.509 33.333 0.00 0.00 36.49 2.62
2110 4573 8.455682 GGTAAAGAATCATGTAATTCCGTGAAA 58.544 33.333 0.00 0.00 36.49 2.69
2111 4574 7.608376 TGGTAAAGAATCATGTAATTCCGTGAA 59.392 33.333 0.00 0.00 36.49 3.18
2112 4575 7.106890 TGGTAAAGAATCATGTAATTCCGTGA 58.893 34.615 0.00 0.00 36.49 4.35
2113 4576 7.315247 TGGTAAAGAATCATGTAATTCCGTG 57.685 36.000 4.04 0.00 36.49 4.94
2114 4577 7.931578 TTGGTAAAGAATCATGTAATTCCGT 57.068 32.000 4.04 0.00 36.49 4.69
2115 4578 9.072294 GTTTTGGTAAAGAATCATGTAATTCCG 57.928 33.333 4.04 0.00 36.49 4.30
2116 4579 9.921637 TGTTTTGGTAAAGAATCATGTAATTCC 57.078 29.630 4.04 0.00 36.49 3.01
2122 4585 8.558700 GCATTTTGTTTTGGTAAAGAATCATGT 58.441 29.630 0.00 0.00 29.39 3.21
2123 4586 8.557864 TGCATTTTGTTTTGGTAAAGAATCATG 58.442 29.630 0.00 0.00 0.00 3.07
2124 4587 8.674263 TGCATTTTGTTTTGGTAAAGAATCAT 57.326 26.923 0.00 0.00 0.00 2.45
2125 4588 8.674263 ATGCATTTTGTTTTGGTAAAGAATCA 57.326 26.923 0.00 0.00 0.00 2.57
2126 4589 9.949174 AAATGCATTTTGTTTTGGTAAAGAATC 57.051 25.926 18.99 0.00 0.00 2.52
2127 4590 9.949174 GAAATGCATTTTGTTTTGGTAAAGAAT 57.051 25.926 24.81 0.00 0.00 2.40
2128 4591 8.950210 TGAAATGCATTTTGTTTTGGTAAAGAA 58.050 25.926 24.81 0.00 0.00 2.52
2129 4592 8.498054 TGAAATGCATTTTGTTTTGGTAAAGA 57.502 26.923 24.81 0.00 0.00 2.52
2130 4593 9.384682 GATGAAATGCATTTTGTTTTGGTAAAG 57.615 29.630 24.81 0.00 37.34 1.85
2131 4594 9.118300 AGATGAAATGCATTTTGTTTTGGTAAA 57.882 25.926 24.81 1.76 37.34 2.01
2132 4595 8.674263 AGATGAAATGCATTTTGTTTTGGTAA 57.326 26.923 24.81 0.00 37.34 2.85
2133 4596 7.387397 GGAGATGAAATGCATTTTGTTTTGGTA 59.613 33.333 24.81 5.17 37.34 3.25
2134 4597 6.205270 GGAGATGAAATGCATTTTGTTTTGGT 59.795 34.615 24.81 0.00 37.34 3.67
2135 4598 6.428771 AGGAGATGAAATGCATTTTGTTTTGG 59.571 34.615 24.81 0.00 37.34 3.28
2136 4599 7.295201 CAGGAGATGAAATGCATTTTGTTTTG 58.705 34.615 24.81 13.64 37.34 2.44
2137 4600 6.072893 GCAGGAGATGAAATGCATTTTGTTTT 60.073 34.615 24.81 10.71 37.34 2.43
2138 4601 5.410439 GCAGGAGATGAAATGCATTTTGTTT 59.590 36.000 24.81 12.22 37.34 2.83
2139 4602 4.933400 GCAGGAGATGAAATGCATTTTGTT 59.067 37.500 24.81 13.06 37.34 2.83
2140 4603 4.501071 GCAGGAGATGAAATGCATTTTGT 58.499 39.130 24.81 16.37 37.34 2.83
2141 4604 3.550275 CGCAGGAGATGAAATGCATTTTG 59.450 43.478 24.81 17.45 37.34 2.44
2142 4605 3.777478 CGCAGGAGATGAAATGCATTTT 58.223 40.909 24.81 11.00 37.34 1.82
2143 4606 2.480759 GCGCAGGAGATGAAATGCATTT 60.481 45.455 24.33 24.33 37.34 2.32
2144 4607 1.066605 GCGCAGGAGATGAAATGCATT 59.933 47.619 5.99 5.99 37.34 3.56
2145 4608 0.666913 GCGCAGGAGATGAAATGCAT 59.333 50.000 0.30 0.00 40.77 3.96
2146 4609 0.677414 TGCGCAGGAGATGAAATGCA 60.677 50.000 5.66 0.00 38.60 3.96
2147 4610 2.100846 TGCGCAGGAGATGAAATGC 58.899 52.632 5.66 0.00 35.32 3.56
2159 4622 0.734309 TGCATGAATAACCTGCGCAG 59.266 50.000 30.52 30.52 41.75 5.18
2160 4623 1.065851 CATGCATGAATAACCTGCGCA 59.934 47.619 22.59 10.98 41.75 6.09
2161 4624 1.066002 ACATGCATGAATAACCTGCGC 59.934 47.619 32.75 0.00 41.75 6.09
2162 4625 4.469552 CATACATGCATGAATAACCTGCG 58.530 43.478 32.75 1.99 41.75 5.18
2177 4640 4.142752 CCAAACAGAGTGAGTGCATACATG 60.143 45.833 0.00 0.00 0.00 3.21
2178 4641 4.005650 CCAAACAGAGTGAGTGCATACAT 58.994 43.478 0.00 0.00 0.00 2.29
2179 4642 3.181455 ACCAAACAGAGTGAGTGCATACA 60.181 43.478 0.00 0.00 0.00 2.29
2180 4643 3.403038 ACCAAACAGAGTGAGTGCATAC 58.597 45.455 0.00 0.00 0.00 2.39
2181 4644 3.324846 AGACCAAACAGAGTGAGTGCATA 59.675 43.478 0.00 0.00 0.00 3.14
2182 4645 2.105477 AGACCAAACAGAGTGAGTGCAT 59.895 45.455 0.00 0.00 0.00 3.96
2183 4646 1.486310 AGACCAAACAGAGTGAGTGCA 59.514 47.619 0.00 0.00 0.00 4.57
2184 4647 2.246719 AGACCAAACAGAGTGAGTGC 57.753 50.000 0.00 0.00 0.00 4.40
2185 4648 4.279671 AGAGTAGACCAAACAGAGTGAGTG 59.720 45.833 0.00 0.00 0.00 3.51
2186 4649 4.475345 AGAGTAGACCAAACAGAGTGAGT 58.525 43.478 0.00 0.00 0.00 3.41
2187 4650 5.473846 TGTAGAGTAGACCAAACAGAGTGAG 59.526 44.000 0.00 0.00 0.00 3.51
2188 4651 5.382616 TGTAGAGTAGACCAAACAGAGTGA 58.617 41.667 0.00 0.00 0.00 3.41
2189 4652 5.707242 TGTAGAGTAGACCAAACAGAGTG 57.293 43.478 0.00 0.00 0.00 3.51
2190 4653 6.239345 CCTTTGTAGAGTAGACCAAACAGAGT 60.239 42.308 0.00 0.00 0.00 3.24
2191 4654 6.159988 CCTTTGTAGAGTAGACCAAACAGAG 58.840 44.000 0.00 0.00 0.00 3.35
2192 4655 5.510861 GCCTTTGTAGAGTAGACCAAACAGA 60.511 44.000 0.00 0.00 0.00 3.41
2193 4656 4.691216 GCCTTTGTAGAGTAGACCAAACAG 59.309 45.833 0.00 0.00 0.00 3.16
2194 4657 4.504340 GGCCTTTGTAGAGTAGACCAAACA 60.504 45.833 0.00 0.00 0.00 2.83
2195 4658 4.001652 GGCCTTTGTAGAGTAGACCAAAC 58.998 47.826 0.00 0.00 0.00 2.93
2196 4659 3.306502 CGGCCTTTGTAGAGTAGACCAAA 60.307 47.826 0.00 0.00 0.00 3.28
2197 4660 2.232941 CGGCCTTTGTAGAGTAGACCAA 59.767 50.000 0.00 0.00 0.00 3.67
2198 4661 1.822990 CGGCCTTTGTAGAGTAGACCA 59.177 52.381 0.00 0.00 0.00 4.02
2199 4662 1.136500 CCGGCCTTTGTAGAGTAGACC 59.864 57.143 0.00 0.00 0.00 3.85
2200 4663 2.097825 TCCGGCCTTTGTAGAGTAGAC 58.902 52.381 0.00 0.00 0.00 2.59
2201 4664 2.376109 CTCCGGCCTTTGTAGAGTAGA 58.624 52.381 0.00 0.00 0.00 2.59
2202 4665 1.409427 CCTCCGGCCTTTGTAGAGTAG 59.591 57.143 0.00 0.00 0.00 2.57
2203 4666 1.272872 ACCTCCGGCCTTTGTAGAGTA 60.273 52.381 0.00 0.00 0.00 2.59
2204 4667 0.544595 ACCTCCGGCCTTTGTAGAGT 60.545 55.000 0.00 0.00 0.00 3.24
2205 4668 0.175989 GACCTCCGGCCTTTGTAGAG 59.824 60.000 0.00 0.00 0.00 2.43
2206 4669 1.601419 CGACCTCCGGCCTTTGTAGA 61.601 60.000 0.00 0.00 33.91 2.59
2207 4670 1.153628 CGACCTCCGGCCTTTGTAG 60.154 63.158 0.00 0.00 33.91 2.74
2208 4671 0.974010 ATCGACCTCCGGCCTTTGTA 60.974 55.000 0.00 0.00 39.14 2.41
2209 4672 0.974010 TATCGACCTCCGGCCTTTGT 60.974 55.000 0.00 0.00 39.14 2.83
2210 4673 0.177141 TTATCGACCTCCGGCCTTTG 59.823 55.000 0.00 0.00 39.14 2.77
2211 4674 0.464452 CTTATCGACCTCCGGCCTTT 59.536 55.000 0.00 0.00 39.14 3.11
2212 4675 0.396695 TCTTATCGACCTCCGGCCTT 60.397 55.000 0.00 0.00 39.14 4.35
2213 4676 1.108132 GTCTTATCGACCTCCGGCCT 61.108 60.000 0.00 0.00 36.62 5.19
2214 4677 1.363080 GTCTTATCGACCTCCGGCC 59.637 63.158 0.00 0.00 36.62 6.13
2215 4678 1.008767 CGTCTTATCGACCTCCGGC 60.009 63.158 0.00 0.00 39.56 6.13
2216 4679 0.816825 TCCGTCTTATCGACCTCCGG 60.817 60.000 0.00 0.00 39.56 5.14
2217 4680 1.236628 ATCCGTCTTATCGACCTCCG 58.763 55.000 0.00 0.00 39.56 4.63
2218 4681 3.819902 ACTTATCCGTCTTATCGACCTCC 59.180 47.826 0.00 0.00 39.56 4.30
2219 4682 5.213675 CAACTTATCCGTCTTATCGACCTC 58.786 45.833 0.00 0.00 39.56 3.85
2220 4683 4.037684 CCAACTTATCCGTCTTATCGACCT 59.962 45.833 0.00 0.00 39.56 3.85
2221 4684 4.202090 ACCAACTTATCCGTCTTATCGACC 60.202 45.833 0.00 0.00 39.56 4.79
2222 4685 4.929781 ACCAACTTATCCGTCTTATCGAC 58.070 43.478 0.00 0.00 39.33 4.20
2223 4686 5.345702 CAACCAACTTATCCGTCTTATCGA 58.654 41.667 0.00 0.00 0.00 3.59
2224 4687 4.025979 GCAACCAACTTATCCGTCTTATCG 60.026 45.833 0.00 0.00 0.00 2.92
2225 4688 4.873827 TGCAACCAACTTATCCGTCTTATC 59.126 41.667 0.00 0.00 0.00 1.75
2226 4689 4.634443 GTGCAACCAACTTATCCGTCTTAT 59.366 41.667 0.00 0.00 0.00 1.73
2227 4690 3.998341 GTGCAACCAACTTATCCGTCTTA 59.002 43.478 0.00 0.00 0.00 2.10
2228 4691 2.812011 GTGCAACCAACTTATCCGTCTT 59.188 45.455 0.00 0.00 0.00 3.01
2229 4692 2.038557 AGTGCAACCAACTTATCCGTCT 59.961 45.455 0.00 0.00 37.80 4.18
2230 4693 2.423577 AGTGCAACCAACTTATCCGTC 58.576 47.619 0.00 0.00 37.80 4.79
2231 4694 2.552315 CAAGTGCAACCAACTTATCCGT 59.448 45.455 0.00 0.00 37.80 4.69
2232 4695 2.095263 CCAAGTGCAACCAACTTATCCG 60.095 50.000 0.00 0.00 37.80 4.18
2233 4696 2.890945 ACCAAGTGCAACCAACTTATCC 59.109 45.455 0.00 0.00 37.80 2.59
2234 4697 3.305335 CCACCAAGTGCAACCAACTTATC 60.305 47.826 0.00 0.00 37.80 1.75
2235 4698 2.627699 CCACCAAGTGCAACCAACTTAT 59.372 45.455 0.00 0.00 37.80 1.73
2236 4699 2.028130 CCACCAAGTGCAACCAACTTA 58.972 47.619 0.00 0.00 37.80 2.24
2237 4700 0.823460 CCACCAAGTGCAACCAACTT 59.177 50.000 0.00 0.00 37.80 2.66
2238 4701 1.042559 CCCACCAAGTGCAACCAACT 61.043 55.000 0.00 0.00 37.80 3.16
2239 4702 1.441311 CCCACCAAGTGCAACCAAC 59.559 57.895 0.00 0.00 37.80 3.77
2240 4703 2.430610 GCCCACCAAGTGCAACCAA 61.431 57.895 0.00 0.00 37.80 3.67
2241 4704 2.837291 GCCCACCAAGTGCAACCA 60.837 61.111 0.00 0.00 37.80 3.67
2242 4705 3.615709 GGCCCACCAAGTGCAACC 61.616 66.667 0.00 0.00 33.92 3.77
2243 4706 3.615709 GGGCCCACCAAGTGCAAC 61.616 66.667 19.95 0.00 39.85 4.17
2244 4707 2.887738 AAAGGGCCCACCAAGTGCAA 62.888 55.000 27.56 0.00 43.89 4.08
2245 4708 3.387609 AAAGGGCCCACCAAGTGCA 62.388 57.895 27.56 0.00 43.89 4.57
2246 4709 2.524148 AAAGGGCCCACCAAGTGC 60.524 61.111 27.56 0.00 43.89 4.40
2247 4710 2.209315 CCAAAGGGCCCACCAAGTG 61.209 63.158 27.56 11.74 43.89 3.16
2248 4711 2.201210 CCAAAGGGCCCACCAAGT 59.799 61.111 27.56 0.00 43.89 3.16
2249 4712 2.201210 ACCAAAGGGCCCACCAAG 59.799 61.111 27.56 11.10 43.89 3.61
2250 4713 2.123077 CACCAAAGGGCCCACCAA 60.123 61.111 27.56 0.00 43.89 3.67
2251 4714 4.232061 CCACCAAAGGGCCCACCA 62.232 66.667 27.56 0.00 43.89 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.