Multiple sequence alignment - TraesCS4D01G069000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G069000 chr4D 100.000 7713 0 0 1 7713 44446871 44439159 0.000000e+00 14244
1 TraesCS4D01G069000 chr4D 100.000 90 0 0 1529 1618 44445262 44445173 4.790000e-37 167
2 TraesCS4D01G069000 chr4D 100.000 90 0 0 1610 1699 44445343 44445254 4.790000e-37 167
3 TraesCS4D01G069000 chr4A 94.805 3176 84 38 3935 7050 555511627 555514781 0.000000e+00 4876
4 TraesCS4D01G069000 chr4A 92.590 1309 85 3 2638 3935 450862677 450861370 0.000000e+00 1869
5 TraesCS4D01G069000 chr4A 97.297 1036 19 6 1611 2641 555510597 555511628 0.000000e+00 1749
6 TraesCS4D01G069000 chr4A 91.023 1192 106 1 2741 3932 581120618 581121808 0.000000e+00 1607
7 TraesCS4D01G069000 chr4A 92.614 1056 54 12 1 1040 555509124 555510171 0.000000e+00 1496
8 TraesCS4D01G069000 chr4A 92.174 575 16 15 1045 1618 555510139 555510685 0.000000e+00 785
9 TraesCS4D01G069000 chr4A 91.250 80 7 0 6011 6090 34567761 34567682 8.180000e-20 110
10 TraesCS4D01G069000 chr4B 96.895 2834 67 9 3938 6759 64110240 64107416 0.000000e+00 4726
11 TraesCS4D01G069000 chr4B 91.081 1637 86 20 1 1618 64112784 64111189 0.000000e+00 2159
12 TraesCS4D01G069000 chr4B 97.589 1037 20 3 1610 2641 64111278 64110242 0.000000e+00 1772
13 TraesCS4D01G069000 chr4B 90.968 310 11 6 6613 6922 64107418 64107126 1.210000e-107 401
14 TraesCS4D01G069000 chr5D 98.002 1301 21 2 2638 3934 169509855 169511154 0.000000e+00 2254
15 TraesCS4D01G069000 chr5D 93.407 91 5 1 7602 7692 446918166 446918255 4.860000e-27 134
16 TraesCS4D01G069000 chr1D 97.703 1306 18 4 2638 3939 95796475 95795178 0.000000e+00 2235
17 TraesCS4D01G069000 chr1D 85.236 508 58 16 7056 7548 89561794 89562299 2.480000e-139 507
18 TraesCS4D01G069000 chr1D 95.349 86 4 0 7608 7693 483383018 483382933 3.750000e-28 137
19 TraesCS4D01G069000 chr1D 92.473 93 5 2 7601 7692 4916487 4916396 1.750000e-26 132
20 TraesCS4D01G069000 chr2A 95.881 1311 41 4 2638 3936 88733636 88732327 0.000000e+00 2109
21 TraesCS4D01G069000 chr2A 75.910 1291 261 39 2664 3937 241969412 241970669 3.960000e-172 616
22 TraesCS4D01G069000 chr2A 90.642 374 31 3 3564 3936 271907607 271907237 1.930000e-135 494
23 TraesCS4D01G069000 chr7B 97.565 1191 28 1 2746 3936 109184440 109185629 0.000000e+00 2037
24 TraesCS4D01G069000 chr7B 90.722 97 7 2 7597 7692 230347628 230347533 2.260000e-25 128
25 TraesCS4D01G069000 chr7B 91.250 80 7 0 6011 6090 263740065 263740144 8.180000e-20 110
26 TraesCS4D01G069000 chr7B 90.000 80 8 0 6011 6090 168311561 168311640 3.810000e-18 104
27 TraesCS4D01G069000 chr2D 97.454 1139 28 1 2797 3935 324922979 324921842 0.000000e+00 1941
28 TraesCS4D01G069000 chr2D 90.000 80 8 0 6011 6090 582551819 582551740 3.810000e-18 104
29 TraesCS4D01G069000 chr2B 95.489 1175 50 3 2764 3937 397229145 397230317 0.000000e+00 1873
30 TraesCS4D01G069000 chr2B 96.075 637 25 0 3298 3934 543540093 543539457 0.000000e+00 1038
31 TraesCS4D01G069000 chr7D 94.915 944 48 0 2992 3935 430120713 430121656 0.000000e+00 1478
32 TraesCS4D01G069000 chr1A 85.466 461 58 7 7056 7508 85842092 85842551 9.060000e-129 472
33 TraesCS4D01G069000 chr1A 78.261 207 28 10 1892 2096 548416878 548417069 4.890000e-22 117
34 TraesCS4D01G069000 chr1A 91.250 80 7 0 6011 6090 209404494 209404415 8.180000e-20 110
35 TraesCS4D01G069000 chr6A 89.744 117 12 0 846 962 212311132 212311016 4.820000e-32 150
36 TraesCS4D01G069000 chr6A 95.402 87 4 0 7606 7692 190660348 190660434 1.040000e-28 139
37 TraesCS4D01G069000 chr6A 95.402 87 4 0 7606 7692 190687614 190687700 1.040000e-28 139
38 TraesCS4D01G069000 chr6A 95.402 87 4 0 7606 7692 190738271 190738357 1.040000e-28 139
39 TraesCS4D01G069000 chr7A 88.430 121 13 1 837 957 148015984 148015865 2.240000e-30 145
40 TraesCS4D01G069000 chr7A 73.460 422 68 25 6202 6606 55205357 55204963 1.360000e-22 119
41 TraesCS4D01G069000 chr3A 88.889 117 13 0 846 962 654324566 654324682 2.240000e-30 145
42 TraesCS4D01G069000 chr3A 73.397 421 72 22 6202 6606 488059243 488059639 3.780000e-23 121
43 TraesCS4D01G069000 chr3A 91.250 80 7 0 6011 6090 20222436 20222515 8.180000e-20 110
44 TraesCS4D01G069000 chr3A 90.000 80 8 0 6011 6090 492688181 492688102 3.810000e-18 104
45 TraesCS4D01G069000 chr3D 94.318 88 5 0 7608 7695 25970311 25970398 1.350000e-27 135
46 TraesCS4D01G069000 chr1B 90.722 97 9 0 7597 7693 180297062 180297158 6.280000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G069000 chr4D 44439159 44446871 7712 True 4859.333333 14244 100.00000 1 7713 3 chr4D.!!$R1 7712
1 TraesCS4D01G069000 chr4A 555509124 555514781 5657 False 2226.500000 4876 94.22250 1 7050 4 chr4A.!!$F2 7049
2 TraesCS4D01G069000 chr4A 450861370 450862677 1307 True 1869.000000 1869 92.59000 2638 3935 1 chr4A.!!$R2 1297
3 TraesCS4D01G069000 chr4A 581120618 581121808 1190 False 1607.000000 1607 91.02300 2741 3932 1 chr4A.!!$F1 1191
4 TraesCS4D01G069000 chr4B 64107126 64112784 5658 True 2264.500000 4726 94.13325 1 6922 4 chr4B.!!$R1 6921
5 TraesCS4D01G069000 chr5D 169509855 169511154 1299 False 2254.000000 2254 98.00200 2638 3934 1 chr5D.!!$F1 1296
6 TraesCS4D01G069000 chr1D 95795178 95796475 1297 True 2235.000000 2235 97.70300 2638 3939 1 chr1D.!!$R2 1301
7 TraesCS4D01G069000 chr1D 89561794 89562299 505 False 507.000000 507 85.23600 7056 7548 1 chr1D.!!$F1 492
8 TraesCS4D01G069000 chr2A 88732327 88733636 1309 True 2109.000000 2109 95.88100 2638 3936 1 chr2A.!!$R1 1298
9 TraesCS4D01G069000 chr2A 241969412 241970669 1257 False 616.000000 616 75.91000 2664 3937 1 chr2A.!!$F1 1273
10 TraesCS4D01G069000 chr7B 109184440 109185629 1189 False 2037.000000 2037 97.56500 2746 3936 1 chr7B.!!$F1 1190
11 TraesCS4D01G069000 chr2D 324921842 324922979 1137 True 1941.000000 1941 97.45400 2797 3935 1 chr2D.!!$R1 1138
12 TraesCS4D01G069000 chr2B 397229145 397230317 1172 False 1873.000000 1873 95.48900 2764 3937 1 chr2B.!!$F1 1173
13 TraesCS4D01G069000 chr2B 543539457 543540093 636 True 1038.000000 1038 96.07500 3298 3934 1 chr2B.!!$R1 636
14 TraesCS4D01G069000 chr7D 430120713 430121656 943 False 1478.000000 1478 94.91500 2992 3935 1 chr7D.!!$F1 943

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 74 1.070289 GGCGGATGGGAGTTAGTTAGG 59.930 57.143 0.00 0.0 0.00 2.69 F
1058 1095 0.107654 CCTCCAAAGGATCGTCACCC 60.108 60.000 0.00 0.0 46.67 4.61 F
1061 1098 0.107654 CCAAAGGATCGTCACCCTCC 60.108 60.000 0.00 0.0 31.17 4.30 F
1661 1698 0.604243 TAAATCAGGGCGCACAACGT 60.604 50.000 14.57 0.0 46.11 3.99 F
3194 3243 0.250038 ATCCACGAGATCGGGCAATG 60.250 55.000 7.22 0.0 42.34 2.82 F
3785 3839 2.282039 CCCTTTGGGCAAATGCGGA 61.282 57.895 0.00 0.0 43.26 5.54 F
4730 4803 0.979665 CCTTGGGCTCTCAGAACTCA 59.020 55.000 0.00 0.0 0.00 3.41 F
5335 5408 1.160137 CTCCTAGGTGTTGCAGTTGC 58.840 55.000 9.08 0.0 42.50 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1062 1099 0.034059 GCCGATGATGACGATCCCTT 59.966 55.000 0.00 0.00 0.00 3.95 R
2494 2537 0.975887 TTTTGCTTCATCCCCCAAGC 59.024 50.000 0.00 0.00 44.55 4.01 R
3194 3243 2.598394 TGTGCCAAAGCTGGAGGC 60.598 61.111 15.34 15.34 46.92 4.70 R
3373 3422 1.078143 GCCAGTGGAAGAAGCGGAT 60.078 57.895 15.20 0.00 0.00 4.18 R
4185 4257 1.740296 CCACCGGTAAGCCTCAACG 60.740 63.158 6.87 0.00 0.00 4.10 R
5335 5408 1.206371 ACCCTAACCTCCATTCGTTCG 59.794 52.381 0.00 0.00 0.00 3.95 R
6480 6569 0.897621 TGCTTCTGCTGCTACTGCTA 59.102 50.000 0.00 0.00 40.48 3.49 R
7445 7717 0.038159 CCTGTCTCCGACTGGTTCAC 60.038 60.000 10.64 0.00 43.56 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 1.070289 GGCGGATGGGAGTTAGTTAGG 59.930 57.143 0.00 0.00 0.00 2.69
74 75 1.070289 GCGGATGGGAGTTAGTTAGGG 59.930 57.143 0.00 0.00 0.00 3.53
75 76 1.070289 CGGATGGGAGTTAGTTAGGGC 59.930 57.143 0.00 0.00 0.00 5.19
76 77 2.409570 GGATGGGAGTTAGTTAGGGCT 58.590 52.381 0.00 0.00 0.00 5.19
77 78 2.778270 GGATGGGAGTTAGTTAGGGCTT 59.222 50.000 0.00 0.00 0.00 4.35
78 79 3.971971 GGATGGGAGTTAGTTAGGGCTTA 59.028 47.826 0.00 0.00 0.00 3.09
79 80 4.040584 GGATGGGAGTTAGTTAGGGCTTAG 59.959 50.000 0.00 0.00 0.00 2.18
80 81 3.381335 TGGGAGTTAGTTAGGGCTTAGG 58.619 50.000 0.00 0.00 0.00 2.69
166 186 2.411290 CGCTCTCCTCGCCTCTTC 59.589 66.667 0.00 0.00 0.00 2.87
263 283 1.357690 CAGTACGAATAGCCGCGGA 59.642 57.895 33.48 9.86 0.00 5.54
293 313 1.302192 GCGGTGTGGCTGGAAGTTA 60.302 57.895 0.00 0.00 35.30 2.24
396 416 3.566775 CCTCTCCTTCCCTGAGGTAAGAA 60.567 52.174 5.27 0.00 41.64 2.52
434 454 4.090761 TCTCAAGTTCCAATGCTGTTCT 57.909 40.909 0.00 0.00 0.00 3.01
607 628 4.943705 CCTAATTGCTTGCTCCAAGTTCTA 59.056 41.667 6.80 0.00 42.77 2.10
614 635 6.237901 TGCTTGCTCCAAGTTCTAGATAAAA 58.762 36.000 6.80 0.00 42.77 1.52
616 637 7.394359 TGCTTGCTCCAAGTTCTAGATAAAATT 59.606 33.333 6.80 0.00 42.77 1.82
682 711 8.181573 GCTTATGTGTTCTCCGAATTTGATAAA 58.818 33.333 0.00 0.00 0.00 1.40
826 862 7.514784 TCAGTGCCCATTATTGAAATCTATG 57.485 36.000 0.00 0.00 0.00 2.23
839 875 6.757897 TGAAATCTATGCGGAAAATGAACT 57.242 33.333 0.00 0.00 0.00 3.01
870 906 3.048600 ACTAATGGAGATGCAGGCCTAA 58.951 45.455 3.98 0.00 0.00 2.69
1057 1094 3.460648 CCTCCAAAGGATCGTCACC 57.539 57.895 0.00 0.00 46.67 4.02
1058 1095 0.107654 CCTCCAAAGGATCGTCACCC 60.108 60.000 0.00 0.00 46.67 4.61
1059 1096 0.905357 CTCCAAAGGATCGTCACCCT 59.095 55.000 0.00 0.00 0.00 4.34
1060 1097 0.902531 TCCAAAGGATCGTCACCCTC 59.097 55.000 0.00 0.00 31.17 4.30
1061 1098 0.107654 CCAAAGGATCGTCACCCTCC 60.108 60.000 0.00 0.00 31.17 4.30
1062 1099 0.613260 CAAAGGATCGTCACCCTCCA 59.387 55.000 0.00 0.00 31.17 3.86
1063 1100 1.003118 CAAAGGATCGTCACCCTCCAA 59.997 52.381 0.00 0.00 31.17 3.53
1064 1101 0.905357 AAGGATCGTCACCCTCCAAG 59.095 55.000 0.00 0.00 31.17 3.61
1065 1102 0.978146 AGGATCGTCACCCTCCAAGG 60.978 60.000 0.00 0.00 34.30 3.61
1079 1116 1.341209 TCCAAGGGATCGTCATCATCG 59.659 52.381 0.00 0.00 0.00 3.84
1348 1385 5.407691 TGCATAGAAGCGAATCATGATTCTC 59.592 40.000 34.33 29.68 40.88 2.87
1613 1650 8.587608 TGATTCCAAGATAAAATGAACAGCTTT 58.412 29.630 0.00 0.00 0.00 3.51
1625 1662 8.822652 AAATGAACAGCTTTATTTTTCAGGAG 57.177 30.769 0.00 0.00 30.07 3.69
1626 1663 5.772521 TGAACAGCTTTATTTTTCAGGAGC 58.227 37.500 0.00 0.00 0.00 4.70
1627 1664 4.790765 ACAGCTTTATTTTTCAGGAGCC 57.209 40.909 0.00 0.00 0.00 4.70
1628 1665 4.151883 ACAGCTTTATTTTTCAGGAGCCA 58.848 39.130 0.00 0.00 0.00 4.75
1629 1666 4.021981 ACAGCTTTATTTTTCAGGAGCCAC 60.022 41.667 0.00 0.00 0.00 5.01
1630 1667 4.219288 CAGCTTTATTTTTCAGGAGCCACT 59.781 41.667 0.00 0.00 0.00 4.00
1631 1668 4.219288 AGCTTTATTTTTCAGGAGCCACTG 59.781 41.667 0.00 0.00 39.84 3.66
1632 1669 4.488879 CTTTATTTTTCAGGAGCCACTGC 58.511 43.478 0.56 0.00 38.36 4.40
1633 1670 1.999648 ATTTTTCAGGAGCCACTGCA 58.000 45.000 0.56 0.00 41.13 4.41
1634 1671 1.999648 TTTTTCAGGAGCCACTGCAT 58.000 45.000 0.56 0.00 41.13 3.96
1635 1672 1.999648 TTTTCAGGAGCCACTGCATT 58.000 45.000 0.56 0.00 41.13 3.56
1636 1673 1.999648 TTTCAGGAGCCACTGCATTT 58.000 45.000 0.56 0.00 41.13 2.32
1637 1674 1.999648 TTCAGGAGCCACTGCATTTT 58.000 45.000 0.56 0.00 41.13 1.82
1638 1675 1.999648 TCAGGAGCCACTGCATTTTT 58.000 45.000 0.56 0.00 41.13 1.94
1639 1676 3.153369 TCAGGAGCCACTGCATTTTTA 57.847 42.857 0.56 0.00 41.13 1.52
1640 1677 3.700538 TCAGGAGCCACTGCATTTTTAT 58.299 40.909 0.56 0.00 41.13 1.40
1641 1678 4.854173 TCAGGAGCCACTGCATTTTTATA 58.146 39.130 0.56 0.00 41.13 0.98
1642 1679 5.448654 TCAGGAGCCACTGCATTTTTATAT 58.551 37.500 0.56 0.00 41.13 0.86
1643 1680 6.600388 TCAGGAGCCACTGCATTTTTATATA 58.400 36.000 0.56 0.00 41.13 0.86
1644 1681 7.059788 TCAGGAGCCACTGCATTTTTATATAA 58.940 34.615 0.56 0.00 41.13 0.98
1645 1682 7.559533 TCAGGAGCCACTGCATTTTTATATAAA 59.440 33.333 3.71 3.71 41.13 1.40
1646 1683 8.362639 CAGGAGCCACTGCATTTTTATATAAAT 58.637 33.333 8.70 0.00 41.13 1.40
1647 1684 8.579863 AGGAGCCACTGCATTTTTATATAAATC 58.420 33.333 8.70 0.00 41.13 2.17
1648 1685 8.359642 GGAGCCACTGCATTTTTATATAAATCA 58.640 33.333 8.70 0.10 41.13 2.57
1649 1686 9.403110 GAGCCACTGCATTTTTATATAAATCAG 57.597 33.333 8.70 14.00 41.13 2.90
1650 1687 8.362639 AGCCACTGCATTTTTATATAAATCAGG 58.637 33.333 19.74 10.92 41.13 3.86
1651 1688 7.599998 GCCACTGCATTTTTATATAAATCAGGG 59.400 37.037 19.74 17.64 37.47 4.45
1652 1689 7.599998 CCACTGCATTTTTATATAAATCAGGGC 59.400 37.037 19.74 14.94 31.74 5.19
1653 1690 7.326789 CACTGCATTTTTATATAAATCAGGGCG 59.673 37.037 19.74 13.46 32.76 6.13
1654 1691 6.155827 TGCATTTTTATATAAATCAGGGCGC 58.844 36.000 8.70 0.00 0.00 6.53
1655 1692 6.155827 GCATTTTTATATAAATCAGGGCGCA 58.844 36.000 10.83 0.00 0.00 6.09
1656 1693 6.089417 GCATTTTTATATAAATCAGGGCGCAC 59.911 38.462 10.83 5.15 0.00 5.34
1657 1694 6.701145 TTTTTATATAAATCAGGGCGCACA 57.299 33.333 14.57 0.00 0.00 4.57
1658 1695 6.701145 TTTTATATAAATCAGGGCGCACAA 57.299 33.333 14.57 0.00 0.00 3.33
1659 1696 5.682943 TTATATAAATCAGGGCGCACAAC 57.317 39.130 14.57 0.00 0.00 3.32
1661 1698 0.604243 TAAATCAGGGCGCACAACGT 60.604 50.000 14.57 0.00 46.11 3.99
1662 1699 2.128853 AAATCAGGGCGCACAACGTG 62.129 55.000 14.57 0.00 46.11 4.49
1665 1702 3.931247 AGGGCGCACAACGTGGTA 61.931 61.111 14.57 0.00 46.11 3.25
1666 1703 3.719144 GGGCGCACAACGTGGTAC 61.719 66.667 10.83 0.00 46.11 3.34
1667 1704 2.968156 GGCGCACAACGTGGTACA 60.968 61.111 10.83 0.00 46.11 2.90
1668 1705 2.322081 GGCGCACAACGTGGTACAT 61.322 57.895 10.83 0.00 44.52 2.29
1686 1723 8.902806 GTGGTACATGATTCCAAGATAAAATGA 58.097 33.333 0.00 0.00 44.52 2.57
1687 1724 9.473007 TGGTACATGATTCCAAGATAAAATGAA 57.527 29.630 0.00 0.00 0.00 2.57
1688 1725 9.736023 GGTACATGATTCCAAGATAAAATGAAC 57.264 33.333 0.00 0.00 0.00 3.18
1691 1728 7.977853 ACATGATTCCAAGATAAAATGAACAGC 59.022 33.333 0.00 0.00 0.00 4.40
1692 1729 7.707624 TGATTCCAAGATAAAATGAACAGCT 57.292 32.000 0.00 0.00 0.00 4.24
1693 1730 8.125978 TGATTCCAAGATAAAATGAACAGCTT 57.874 30.769 0.00 0.00 0.00 3.74
1746 1784 9.436866 TTCCAATTATACTGTAGGGTACACATA 57.563 33.333 0.00 0.00 34.46 2.29
1766 1804 6.149973 CACATACCAGTGACAATGAAGACATT 59.850 38.462 4.07 0.00 42.99 2.71
2467 2510 6.309737 ACAAAAGGTGAGAACGTATACGATTC 59.690 38.462 30.77 25.54 43.02 2.52
2480 2523 7.486647 ACGTATACGATTCTGGATGTTTAACT 58.513 34.615 30.77 0.00 43.02 2.24
2494 2537 9.112725 TGGATGTTTAACTTCATGTATCATCAG 57.887 33.333 12.02 0.00 33.29 2.90
2949 2998 3.068881 CAGGCCTCGACCTCCAAA 58.931 61.111 0.00 0.00 38.26 3.28
3194 3243 0.250038 ATCCACGAGATCGGGCAATG 60.250 55.000 7.22 0.00 42.34 2.82
3247 3296 2.759973 TCTCTGCCGAGCCCGATT 60.760 61.111 0.00 0.00 37.19 3.34
3656 3710 2.513897 GCGCAAAGGCCTCGGTAT 60.514 61.111 5.23 0.00 36.38 2.73
3785 3839 2.282039 CCCTTTGGGCAAATGCGGA 61.282 57.895 0.00 0.00 43.26 5.54
3960 4026 3.580895 TGTGGTTCATACTCTGCAACCTA 59.419 43.478 1.92 0.00 36.65 3.08
3990 4056 6.422776 ACAATATAGAAACAGCAGAAACCG 57.577 37.500 0.00 0.00 0.00 4.44
4185 4257 2.007547 GCTCGGAAAGACTTGGGTAGC 61.008 57.143 0.00 0.00 0.00 3.58
4342 4414 1.373590 AACATATGCGTTGTCCCGGC 61.374 55.000 1.58 0.00 0.00 6.13
4344 4416 1.078072 ATATGCGTTGTCCCGGCAA 60.078 52.632 0.00 0.00 40.49 4.52
4407 4479 4.245660 CGGCATAAATGTGGTCTCGATAT 58.754 43.478 0.00 0.00 0.00 1.63
4439 4511 6.533730 TGACCATCCATATCCAAGTATGTTC 58.466 40.000 0.00 0.00 31.55 3.18
4516 4589 8.434661 GCAATATTGTTACAGGTGACAAATTTG 58.565 33.333 16.67 16.67 41.36 2.32
4661 4734 8.439971 ACTCTTATACCTGCCATATGAAATCAA 58.560 33.333 3.65 0.00 0.00 2.57
4718 4791 4.770531 AGTAAAATAGTGGAAACCTTGGGC 59.229 41.667 0.00 0.00 0.00 5.36
4730 4803 0.979665 CCTTGGGCTCTCAGAACTCA 59.020 55.000 0.00 0.00 0.00 3.41
5335 5408 1.160137 CTCCTAGGTGTTGCAGTTGC 58.840 55.000 9.08 0.00 42.50 4.17
5359 5432 4.684484 ACGAATGGAGGTTAGGGTTATC 57.316 45.455 0.00 0.00 0.00 1.75
5360 5433 4.035112 ACGAATGGAGGTTAGGGTTATCA 58.965 43.478 0.00 0.00 0.00 2.15
5783 5869 1.272147 GGGCATCACCTTCCTGAAACT 60.272 52.381 0.00 0.00 39.10 2.66
5826 5912 6.404074 GGAAGAGCAAATTGTCAGAATGGTAG 60.404 42.308 0.00 0.00 36.16 3.18
5863 5949 6.961359 TTTCTTGTATGTCACCTTCATACG 57.039 37.500 10.17 0.00 45.91 3.06
5919 6007 5.147865 CACAGATATCGAGACGACCAATAC 58.852 45.833 0.00 0.00 39.18 1.89
6126 6215 5.055144 ACGAACCTGTTAAGAAGTCCTTTC 58.945 41.667 0.00 0.00 36.34 2.62
6504 6593 1.071385 AGTAGCAGCAGAAGCAACAGT 59.929 47.619 0.00 0.00 45.49 3.55
6529 6618 4.349342 ACACCTTCTTCAACATCTTCCTCT 59.651 41.667 0.00 0.00 0.00 3.69
6655 6744 0.790866 GCATTCGAGCAGTTGAACGC 60.791 55.000 4.44 4.44 28.49 4.84
6673 6762 1.683917 CGCTATGGCTTGAGAGGTACT 59.316 52.381 0.00 0.00 37.70 2.73
6733 6962 4.263905 TGAGGTAGGGTTTTGCATCTTCAT 60.264 41.667 0.00 0.00 0.00 2.57
6791 7025 4.730966 TGGTTCAAAGTTAGGCATACCAA 58.269 39.130 0.00 0.00 39.06 3.67
6792 7026 5.141182 TGGTTCAAAGTTAGGCATACCAAA 58.859 37.500 0.00 0.00 39.06 3.28
6793 7027 5.777732 TGGTTCAAAGTTAGGCATACCAAAT 59.222 36.000 0.00 0.00 39.06 2.32
6794 7028 6.099341 GGTTCAAAGTTAGGCATACCAAATG 58.901 40.000 0.00 0.00 39.06 2.32
6795 7029 5.323371 TCAAAGTTAGGCATACCAAATGC 57.677 39.130 1.33 1.33 43.85 3.56
6796 7030 5.016173 TCAAAGTTAGGCATACCAAATGCT 58.984 37.500 9.60 0.00 44.02 3.79
6797 7031 6.184068 TCAAAGTTAGGCATACCAAATGCTA 58.816 36.000 9.60 0.00 44.02 3.49
6798 7032 6.833416 TCAAAGTTAGGCATACCAAATGCTAT 59.167 34.615 9.60 2.55 44.02 2.97
6799 7033 7.996066 TCAAAGTTAGGCATACCAAATGCTATA 59.004 33.333 9.60 1.71 44.02 1.31
6800 7034 7.745620 AAGTTAGGCATACCAAATGCTATAC 57.254 36.000 9.60 5.66 44.02 1.47
6826 7060 7.201556 CGCATAAGATGACAAATAGAACACAGT 60.202 37.037 0.00 0.00 0.00 3.55
6869 7103 8.571461 AGTCATCATATACCATAAATTGCAGG 57.429 34.615 0.00 0.00 0.00 4.85
6903 7137 9.013229 TCTGTTGTGCTTTAGATATGAATTTGT 57.987 29.630 0.00 0.00 0.00 2.83
6915 7149 8.388484 AGATATGAATTTGTCAAGGTGATAGC 57.612 34.615 0.00 0.00 40.50 2.97
6916 7150 7.994911 AGATATGAATTTGTCAAGGTGATAGCA 59.005 33.333 0.00 0.00 40.50 3.49
6918 7152 6.647334 TGAATTTGTCAAGGTGATAGCAAA 57.353 33.333 0.00 0.00 31.51 3.68
6919 7153 6.446318 TGAATTTGTCAAGGTGATAGCAAAC 58.554 36.000 0.00 0.00 31.51 2.93
6921 7155 6.594788 ATTTGTCAAGGTGATAGCAAACAT 57.405 33.333 0.00 0.00 27.60 2.71
6922 7156 6.403866 TTTGTCAAGGTGATAGCAAACATT 57.596 33.333 0.00 0.00 0.00 2.71
6923 7157 5.375417 TGTCAAGGTGATAGCAAACATTG 57.625 39.130 0.00 0.00 38.94 2.82
6924 7158 4.826733 TGTCAAGGTGATAGCAAACATTGT 59.173 37.500 0.00 0.00 38.75 2.71
6925 7159 6.000840 TGTCAAGGTGATAGCAAACATTGTA 58.999 36.000 0.00 0.00 38.75 2.41
6926 7160 6.149308 TGTCAAGGTGATAGCAAACATTGTAG 59.851 38.462 0.00 0.00 38.75 2.74
6927 7161 6.371548 GTCAAGGTGATAGCAAACATTGTAGA 59.628 38.462 0.00 0.00 38.75 2.59
6928 7162 6.595326 TCAAGGTGATAGCAAACATTGTAGAG 59.405 38.462 0.00 0.00 38.75 2.43
6930 7164 7.182817 AGGTGATAGCAAACATTGTAGAGTA 57.817 36.000 0.00 0.00 0.00 2.59
6931 7165 7.796054 AGGTGATAGCAAACATTGTAGAGTAT 58.204 34.615 0.00 0.00 0.00 2.12
6932 7166 8.267894 AGGTGATAGCAAACATTGTAGAGTATT 58.732 33.333 0.00 0.00 0.00 1.89
6933 7167 8.338259 GGTGATAGCAAACATTGTAGAGTATTG 58.662 37.037 0.00 0.00 0.00 1.90
7007 7272 2.287915 GCCTTTCTGTATGTGCGTATGG 59.712 50.000 0.00 0.00 0.00 2.74
7008 7273 2.872245 CCTTTCTGTATGTGCGTATGGG 59.128 50.000 0.00 0.00 0.00 4.00
7010 7275 0.105964 TCTGTATGTGCGTATGGGGC 59.894 55.000 0.00 0.00 0.00 5.80
7031 7296 3.687698 GCTCCATTTTTACGTCTTGCCTA 59.312 43.478 0.00 0.00 0.00 3.93
7045 7310 6.129393 CGTCTTGCCTATATTTTCGACATTG 58.871 40.000 0.00 0.00 0.00 2.82
7050 7315 5.883115 TGCCTATATTTTCGACATTGGTGAA 59.117 36.000 0.00 0.00 0.00 3.18
7051 7316 6.375736 TGCCTATATTTTCGACATTGGTGAAA 59.624 34.615 0.00 2.57 0.00 2.69
7052 7317 7.094162 TGCCTATATTTTCGACATTGGTGAAAA 60.094 33.333 15.88 15.88 43.38 2.29
7061 7326 5.703130 TCGACATTGGTGAAAATACATGTCA 59.297 36.000 0.00 0.00 37.58 3.58
7064 7329 6.632909 ACATTGGTGAAAATACATGTCATGG 58.367 36.000 17.08 0.00 33.60 3.66
7067 7332 4.949238 TGGTGAAAATACATGTCATGGAGG 59.051 41.667 17.08 0.00 33.60 4.30
7102 7368 4.656041 GCTTTTGCTACTCTTGTGCATAG 58.344 43.478 0.00 0.00 43.35 2.23
7103 7369 4.656041 CTTTTGCTACTCTTGTGCATAGC 58.344 43.478 7.63 7.63 40.40 2.97
7114 7380 3.117491 TGTGCATAGCAATCTAGAGCC 57.883 47.619 0.00 0.00 41.47 4.70
7119 7385 1.722034 TAGCAATCTAGAGCCTGGGG 58.278 55.000 0.00 0.00 0.00 4.96
7163 7429 4.422073 TGGCACAGTTCTGGATTATAGG 57.578 45.455 4.82 0.00 0.00 2.57
7167 7433 4.816925 GCACAGTTCTGGATTATAGGGTTC 59.183 45.833 4.82 0.00 0.00 3.62
7168 7434 5.629133 GCACAGTTCTGGATTATAGGGTTCA 60.629 44.000 4.82 0.00 0.00 3.18
7178 7444 9.490379 CTGGATTATAGGGTTCACATAGTTAAC 57.510 37.037 0.00 0.00 0.00 2.01
7180 7446 9.708092 GGATTATAGGGTTCACATAGTTAACTC 57.292 37.037 12.39 0.00 0.00 3.01
7220 7487 8.944029 CCATGTCCATCTGATATAACTGAAATC 58.056 37.037 0.00 0.00 0.00 2.17
7246 7513 4.283722 ACAAGTAAGAGGATGTTCGGAACT 59.716 41.667 20.53 7.38 0.00 3.01
7260 7528 3.999046 TCGGAACTAAGAACCTGGAAAC 58.001 45.455 0.00 0.00 0.00 2.78
7309 7577 4.035675 GTCTGGGTCTGAACAAACTTTCTG 59.964 45.833 0.00 0.00 0.00 3.02
7310 7578 3.947834 CTGGGTCTGAACAAACTTTCTGT 59.052 43.478 0.00 0.00 0.00 3.41
7319 7587 5.580297 TGAACAAACTTTCTGTTGAATTGGC 59.420 36.000 0.00 0.00 39.13 4.52
7322 7590 5.118286 CAAACTTTCTGTTGAATTGGCCTT 58.882 37.500 3.32 0.00 39.13 4.35
7334 7602 2.099141 TTGGCCTTCATGTTCGAGAG 57.901 50.000 3.32 0.00 0.00 3.20
7335 7603 1.266178 TGGCCTTCATGTTCGAGAGA 58.734 50.000 3.32 0.00 39.20 3.10
7336 7604 8.918346 TGAATTGGCCTTCATGTTCGAGAGAA 62.918 42.308 3.32 0.00 37.74 2.87
7384 7653 4.939509 GTATGTTTGCATACGACAGGTT 57.060 40.909 2.77 0.00 45.23 3.50
7388 7660 4.382291 TGTTTGCATACGACAGGTTAGTT 58.618 39.130 2.77 0.00 0.00 2.24
7389 7661 5.539979 TGTTTGCATACGACAGGTTAGTTA 58.460 37.500 2.77 0.00 0.00 2.24
7393 7665 8.485591 GTTTGCATACGACAGGTTAGTTATATC 58.514 37.037 0.00 0.00 0.00 1.63
7397 7669 7.537991 GCATACGACAGGTTAGTTATATCAGAC 59.462 40.741 0.00 0.00 0.00 3.51
7398 7670 8.565416 CATACGACAGGTTAGTTATATCAGACA 58.435 37.037 0.00 0.00 0.00 3.41
7401 7673 7.974501 ACGACAGGTTAGTTATATCAGACAAAG 59.025 37.037 0.00 0.00 0.00 2.77
7414 7686 4.633980 CAAAGGCCTTTGCGTGTC 57.366 55.556 38.12 0.00 42.66 3.67
7415 7687 1.732917 CAAAGGCCTTTGCGTGTCA 59.267 52.632 38.12 0.00 42.66 3.58
7424 7696 2.345641 CCTTTGCGTGTCACGAGATAAG 59.654 50.000 28.83 20.85 46.05 1.73
7425 7697 2.717580 TTGCGTGTCACGAGATAAGT 57.282 45.000 28.83 0.00 46.05 2.24
7441 7713 7.704472 ACGAGATAAGTGATTTTGCTCTTCTAG 59.296 37.037 0.00 0.00 0.00 2.43
7450 7722 7.748241 GTGATTTTGCTCTTCTAGAATGTGAAC 59.252 37.037 5.44 0.00 0.00 3.18
7455 7727 4.867608 GCTCTTCTAGAATGTGAACCAGTC 59.132 45.833 5.44 0.00 38.44 3.51
7476 7748 4.651778 TCGGAGACAGGATTCAAATTTGT 58.348 39.130 17.47 0.00 0.00 2.83
7508 7781 1.401931 GCAGGTGCATGCTTTGTACTG 60.402 52.381 20.33 16.79 43.07 2.74
7509 7782 1.881973 CAGGTGCATGCTTTGTACTGT 59.118 47.619 20.33 0.00 40.46 3.55
7510 7783 1.881973 AGGTGCATGCTTTGTACTGTG 59.118 47.619 20.33 0.00 40.46 3.66
7513 7786 3.490761 GGTGCATGCTTTGTACTGTGTTT 60.491 43.478 20.33 0.00 40.46 2.83
7514 7787 3.486841 GTGCATGCTTTGTACTGTGTTTG 59.513 43.478 20.33 0.00 37.89 2.93
7515 7788 2.472488 GCATGCTTTGTACTGTGTTTGC 59.528 45.455 11.37 0.00 0.00 3.68
7516 7789 2.466870 TGCTTTGTACTGTGTTTGCG 57.533 45.000 0.00 0.00 0.00 4.85
7519 7796 2.478879 GCTTTGTACTGTGTTTGCGGTT 60.479 45.455 0.00 0.00 0.00 4.44
7540 7817 6.513066 CGGTTTGTCATTCCAATTTTGCATTT 60.513 34.615 0.00 0.00 0.00 2.32
7583 7860 9.734620 TCAAAATGAAGAACACTCTTTACATTG 57.265 29.630 0.00 3.07 42.19 2.82
7584 7861 8.971321 CAAAATGAAGAACACTCTTTACATTGG 58.029 33.333 0.00 0.00 42.19 3.16
7585 7862 5.689383 TGAAGAACACTCTTTACATTGGC 57.311 39.130 0.00 0.00 42.19 4.52
7586 7863 5.376625 TGAAGAACACTCTTTACATTGGCT 58.623 37.500 0.00 0.00 42.19 4.75
7587 7864 5.827797 TGAAGAACACTCTTTACATTGGCTT 59.172 36.000 0.00 0.00 42.19 4.35
7588 7865 6.321181 TGAAGAACACTCTTTACATTGGCTTT 59.679 34.615 0.00 0.00 42.19 3.51
7589 7866 6.715347 AGAACACTCTTTACATTGGCTTTT 57.285 33.333 0.00 0.00 0.00 2.27
7590 7867 7.112452 AGAACACTCTTTACATTGGCTTTTT 57.888 32.000 0.00 0.00 0.00 1.94
7591 7868 7.203218 AGAACACTCTTTACATTGGCTTTTTC 58.797 34.615 0.00 0.00 0.00 2.29
7592 7869 6.463995 ACACTCTTTACATTGGCTTTTTCA 57.536 33.333 0.00 0.00 0.00 2.69
7593 7870 7.054491 ACACTCTTTACATTGGCTTTTTCAT 57.946 32.000 0.00 0.00 0.00 2.57
7594 7871 7.500141 ACACTCTTTACATTGGCTTTTTCATT 58.500 30.769 0.00 0.00 0.00 2.57
7595 7872 8.637986 ACACTCTTTACATTGGCTTTTTCATTA 58.362 29.630 0.00 0.00 0.00 1.90
7596 7873 9.132521 CACTCTTTACATTGGCTTTTTCATTAG 57.867 33.333 0.00 0.00 0.00 1.73
7597 7874 8.860088 ACTCTTTACATTGGCTTTTTCATTAGT 58.140 29.630 0.00 0.00 0.00 2.24
7598 7875 9.696917 CTCTTTACATTGGCTTTTTCATTAGTT 57.303 29.630 0.00 0.00 0.00 2.24
7604 7881 9.830975 ACATTGGCTTTTTCATTAGTTTTAGTT 57.169 25.926 0.00 0.00 0.00 2.24
7606 7883 9.830975 ATTGGCTTTTTCATTAGTTTTAGTTGT 57.169 25.926 0.00 0.00 0.00 3.32
7607 7884 9.660180 TTGGCTTTTTCATTAGTTTTAGTTGTT 57.340 25.926 0.00 0.00 0.00 2.83
7616 7893 9.498176 TCATTAGTTTTAGTTGTTACTTCCTCC 57.502 33.333 0.00 0.00 35.78 4.30
7617 7894 9.280174 CATTAGTTTTAGTTGTTACTTCCTCCA 57.720 33.333 0.00 0.00 35.78 3.86
7621 7898 9.856162 AGTTTTAGTTGTTACTTCCTCCATAAA 57.144 29.630 0.00 0.00 35.78 1.40
7653 7930 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
7654 7931 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
7655 7932 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
7656 7933 8.954350 AGAGCGTTTAGATCACTACTTTAGTAA 58.046 33.333 0.00 0.00 37.82 2.24
7657 7934 9.733219 GAGCGTTTAGATCACTACTTTAGTAAT 57.267 33.333 0.00 0.00 37.23 1.89
7658 7935 9.733219 AGCGTTTAGATCACTACTTTAGTAATC 57.267 33.333 0.00 0.00 37.23 1.75
7659 7936 9.733219 GCGTTTAGATCACTACTTTAGTAATCT 57.267 33.333 4.72 4.72 37.23 2.40
7665 7942 9.733219 AGATCACTACTTTAGTAATCTAAACGC 57.267 33.333 0.00 0.00 40.05 4.84
7666 7943 9.733219 GATCACTACTTTAGTAATCTAAACGCT 57.267 33.333 0.00 0.00 40.05 5.07
7667 7944 9.733219 ATCACTACTTTAGTAATCTAAACGCTC 57.267 33.333 0.00 0.00 40.05 5.03
7668 7945 8.954350 TCACTACTTTAGTAATCTAAACGCTCT 58.046 33.333 0.00 0.00 40.05 4.09
7669 7946 9.570488 CACTACTTTAGTAATCTAAACGCTCTT 57.430 33.333 0.00 0.00 40.05 2.85
7687 7964 8.209917 ACGCTCTTATATTTCTTTACAAAGGG 57.790 34.615 2.04 0.00 36.67 3.95
7688 7965 8.044908 ACGCTCTTATATTTCTTTACAAAGGGA 58.955 33.333 2.04 0.00 36.67 4.20
7689 7966 8.552034 CGCTCTTATATTTCTTTACAAAGGGAG 58.448 37.037 2.04 0.00 36.67 4.30
7690 7967 9.397280 GCTCTTATATTTCTTTACAAAGGGAGT 57.603 33.333 2.04 0.00 36.67 3.85
7695 7972 6.819397 ATTTCTTTACAAAGGGAGTAGCAC 57.181 37.500 2.04 0.00 36.67 4.40
7696 7973 4.281898 TCTTTACAAAGGGAGTAGCACC 57.718 45.455 2.04 0.00 36.67 5.01
7697 7974 3.908103 TCTTTACAAAGGGAGTAGCACCT 59.092 43.478 2.04 0.00 39.21 4.00
7698 7975 5.088730 TCTTTACAAAGGGAGTAGCACCTA 58.911 41.667 2.04 0.00 35.64 3.08
7699 7976 5.724854 TCTTTACAAAGGGAGTAGCACCTAT 59.275 40.000 2.04 0.00 35.64 2.57
7700 7977 6.214819 TCTTTACAAAGGGAGTAGCACCTATT 59.785 38.462 2.04 0.00 35.64 1.73
7701 7978 4.929146 ACAAAGGGAGTAGCACCTATTT 57.071 40.909 0.00 0.00 35.64 1.40
7702 7979 4.844884 ACAAAGGGAGTAGCACCTATTTC 58.155 43.478 0.00 0.00 35.64 2.17
7703 7980 4.288626 ACAAAGGGAGTAGCACCTATTTCA 59.711 41.667 0.00 0.00 35.64 2.69
7704 7981 4.762289 AAGGGAGTAGCACCTATTTCAG 57.238 45.455 0.00 0.00 35.64 3.02
7705 7982 3.995636 AGGGAGTAGCACCTATTTCAGA 58.004 45.455 0.00 0.00 34.71 3.27
7706 7983 3.707102 AGGGAGTAGCACCTATTTCAGAC 59.293 47.826 0.00 0.00 34.71 3.51
7707 7984 3.451178 GGGAGTAGCACCTATTTCAGACA 59.549 47.826 0.00 0.00 0.00 3.41
7708 7985 4.081087 GGGAGTAGCACCTATTTCAGACAA 60.081 45.833 0.00 0.00 0.00 3.18
7709 7986 4.870991 GGAGTAGCACCTATTTCAGACAAC 59.129 45.833 0.00 0.00 0.00 3.32
7710 7987 5.337652 GGAGTAGCACCTATTTCAGACAACT 60.338 44.000 0.00 0.00 0.00 3.16
7711 7988 6.115448 AGTAGCACCTATTTCAGACAACTT 57.885 37.500 0.00 0.00 0.00 2.66
7712 7989 6.534634 AGTAGCACCTATTTCAGACAACTTT 58.465 36.000 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 6.808212 AGAAAATAAAATGCGAATCTGGTGTG 59.192 34.615 0.00 0.00 0.00 3.82
106 107 7.542130 GTCAAGAAAATAAAATGCGAATCTGGT 59.458 33.333 0.00 0.00 0.00 4.00
184 204 3.798511 GGCGGGGAAGAGAAGGGG 61.799 72.222 0.00 0.00 0.00 4.79
243 263 2.300787 CGCGGCTATTCGTACTGCC 61.301 63.158 0.00 0.00 41.76 4.85
293 313 3.244875 TGGGATGCTATATGAACCGCAAT 60.245 43.478 0.00 0.00 35.83 3.56
434 454 3.765511 CAGATCATGAAAAAGAAGCCCCA 59.234 43.478 0.00 0.00 0.00 4.96
607 628 6.071952 ACAATCGCCACTCACAAATTTTATCT 60.072 34.615 0.00 0.00 0.00 1.98
614 635 2.783135 AGACAATCGCCACTCACAAAT 58.217 42.857 0.00 0.00 0.00 2.32
616 637 2.353704 CCTAGACAATCGCCACTCACAA 60.354 50.000 0.00 0.00 0.00 3.33
727 756 5.800296 TCGGAATCTTGTTTCATACTTCCA 58.200 37.500 0.00 0.00 32.12 3.53
812 848 9.515020 GTTCATTTTCCGCATAGATTTCAATAA 57.485 29.630 0.00 0.00 0.00 1.40
826 862 7.920738 AGTATCTCATTTAGTTCATTTTCCGC 58.079 34.615 0.00 0.00 0.00 5.54
839 875 8.316946 CCTGCATCTCCATTAGTATCTCATTTA 58.683 37.037 0.00 0.00 0.00 1.40
870 906 4.772624 GGGAGGAAGTTGAATTTAAGGCTT 59.227 41.667 4.58 4.58 0.00 4.35
1057 1094 1.123077 TGATGACGATCCCTTGGAGG 58.877 55.000 0.00 0.00 34.05 4.30
1058 1095 2.608998 CGATGATGACGATCCCTTGGAG 60.609 54.545 0.00 0.00 34.05 3.86
1059 1096 1.341209 CGATGATGACGATCCCTTGGA 59.659 52.381 0.00 0.00 35.55 3.53
1060 1097 1.606480 CCGATGATGACGATCCCTTGG 60.606 57.143 0.00 0.00 0.00 3.61
1061 1098 1.788258 CCGATGATGACGATCCCTTG 58.212 55.000 0.00 0.00 0.00 3.61
1062 1099 0.034059 GCCGATGATGACGATCCCTT 59.966 55.000 0.00 0.00 0.00 3.95
1063 1100 0.829602 AGCCGATGATGACGATCCCT 60.830 55.000 0.00 0.00 0.00 4.20
1064 1101 0.668706 CAGCCGATGATGACGATCCC 60.669 60.000 0.00 0.00 0.00 3.85
1065 1102 0.315251 TCAGCCGATGATGACGATCC 59.685 55.000 0.00 0.00 30.48 3.36
1066 1103 1.789464 GTTCAGCCGATGATGACGATC 59.211 52.381 0.00 0.00 36.45 3.69
1067 1104 1.136891 TGTTCAGCCGATGATGACGAT 59.863 47.619 0.00 0.00 36.45 3.73
1068 1105 0.530288 TGTTCAGCCGATGATGACGA 59.470 50.000 0.00 0.00 36.45 4.20
1069 1106 1.358877 TTGTTCAGCCGATGATGACG 58.641 50.000 0.00 0.00 36.45 4.35
1070 1107 3.829886 TTTTGTTCAGCCGATGATGAC 57.170 42.857 0.00 0.00 36.45 3.06
1071 1108 5.427378 TCTATTTTGTTCAGCCGATGATGA 58.573 37.500 0.00 0.00 37.89 2.92
1072 1109 5.739752 TCTATTTTGTTCAGCCGATGATG 57.260 39.130 0.00 0.00 37.89 3.07
1073 1110 6.949352 AATCTATTTTGTTCAGCCGATGAT 57.051 33.333 0.00 0.00 37.89 2.45
1079 1116 8.937634 ATGATGAAAATCTATTTTGTTCAGCC 57.062 30.769 5.44 0.00 39.86 4.85
1380 1417 4.096732 ACAAGGAAGCGCATGATAAAAC 57.903 40.909 11.47 0.00 0.00 2.43
1508 1545 3.057315 AGCACAAATTGTTCGATCCCTTG 60.057 43.478 0.00 0.00 0.00 3.61
1509 1546 3.157087 AGCACAAATTGTTCGATCCCTT 58.843 40.909 0.00 0.00 0.00 3.95
1613 1650 3.153369 TGCAGTGGCTCCTGAAAAATA 57.847 42.857 8.62 0.00 41.91 1.40
1614 1651 1.999648 TGCAGTGGCTCCTGAAAAAT 58.000 45.000 8.62 0.00 41.91 1.82
1615 1652 1.999648 ATGCAGTGGCTCCTGAAAAA 58.000 45.000 8.62 0.00 41.91 1.94
1616 1653 1.999648 AATGCAGTGGCTCCTGAAAA 58.000 45.000 8.62 0.00 41.91 2.29
1617 1654 1.999648 AAATGCAGTGGCTCCTGAAA 58.000 45.000 8.62 0.00 41.91 2.69
1618 1655 1.999648 AAAATGCAGTGGCTCCTGAA 58.000 45.000 8.62 0.00 41.91 3.02
1619 1656 1.999648 AAAAATGCAGTGGCTCCTGA 58.000 45.000 8.62 0.00 41.91 3.86
1620 1657 5.779529 ATATAAAAATGCAGTGGCTCCTG 57.220 39.130 0.00 1.07 41.91 3.86
1621 1658 7.896383 TTTATATAAAAATGCAGTGGCTCCT 57.104 32.000 5.41 0.00 41.91 3.69
1622 1659 8.359642 TGATTTATATAAAAATGCAGTGGCTCC 58.640 33.333 11.80 0.00 41.91 4.70
1623 1660 9.403110 CTGATTTATATAAAAATGCAGTGGCTC 57.597 33.333 11.80 1.93 41.91 4.70
1624 1661 8.362639 CCTGATTTATATAAAAATGCAGTGGCT 58.637 33.333 11.80 0.00 41.91 4.75
1625 1662 7.599998 CCCTGATTTATATAAAAATGCAGTGGC 59.400 37.037 11.80 0.00 41.68 5.01
1626 1663 7.599998 GCCCTGATTTATATAAAAATGCAGTGG 59.400 37.037 11.80 16.46 30.45 4.00
1627 1664 7.326789 CGCCCTGATTTATATAAAAATGCAGTG 59.673 37.037 11.80 9.35 30.45 3.66
1628 1665 7.370383 CGCCCTGATTTATATAAAAATGCAGT 58.630 34.615 11.80 0.00 30.45 4.40
1629 1666 6.308766 GCGCCCTGATTTATATAAAAATGCAG 59.691 38.462 11.80 14.53 31.26 4.41
1630 1667 6.155827 GCGCCCTGATTTATATAAAAATGCA 58.844 36.000 11.80 7.39 0.00 3.96
1631 1668 6.089417 GTGCGCCCTGATTTATATAAAAATGC 59.911 38.462 11.80 9.34 0.00 3.56
1632 1669 7.144661 TGTGCGCCCTGATTTATATAAAAATG 58.855 34.615 11.80 5.21 0.00 2.32
1633 1670 7.283625 TGTGCGCCCTGATTTATATAAAAAT 57.716 32.000 11.80 0.00 0.00 1.82
1634 1671 6.701145 TGTGCGCCCTGATTTATATAAAAA 57.299 33.333 11.80 3.42 0.00 1.94
1635 1672 6.500041 GTTGTGCGCCCTGATTTATATAAAA 58.500 36.000 11.80 0.00 0.00 1.52
1636 1673 5.277586 CGTTGTGCGCCCTGATTTATATAAA 60.278 40.000 10.27 10.27 0.00 1.40
1637 1674 4.212425 CGTTGTGCGCCCTGATTTATATAA 59.788 41.667 4.18 0.00 0.00 0.98
1638 1675 3.743911 CGTTGTGCGCCCTGATTTATATA 59.256 43.478 4.18 0.00 0.00 0.86
1639 1676 2.548057 CGTTGTGCGCCCTGATTTATAT 59.452 45.455 4.18 0.00 0.00 0.86
1640 1677 1.937223 CGTTGTGCGCCCTGATTTATA 59.063 47.619 4.18 0.00 0.00 0.98
1641 1678 0.732571 CGTTGTGCGCCCTGATTTAT 59.267 50.000 4.18 0.00 0.00 1.40
1642 1679 0.604243 ACGTTGTGCGCCCTGATTTA 60.604 50.000 4.18 0.00 46.11 1.40
1643 1680 1.896660 ACGTTGTGCGCCCTGATTT 60.897 52.632 4.18 0.00 46.11 2.17
1644 1681 2.281484 ACGTTGTGCGCCCTGATT 60.281 55.556 4.18 0.00 46.11 2.57
1645 1682 3.049674 CACGTTGTGCGCCCTGAT 61.050 61.111 4.18 0.00 46.11 2.90
1648 1685 3.931247 TACCACGTTGTGCGCCCT 61.931 61.111 4.18 0.00 46.11 5.19
1649 1686 3.719144 GTACCACGTTGTGCGCCC 61.719 66.667 4.18 0.00 46.11 6.13
1650 1687 2.322081 ATGTACCACGTTGTGCGCC 61.322 57.895 4.18 0.00 46.11 6.53
1651 1688 1.154488 CATGTACCACGTTGTGCGC 60.154 57.895 0.00 0.00 46.11 6.09
1653 1690 2.159572 GGAATCATGTACCACGTTGTGC 60.160 50.000 1.91 1.28 31.34 4.57
1654 1691 3.070748 TGGAATCATGTACCACGTTGTG 58.929 45.455 1.91 0.00 0.00 3.33
1655 1692 3.410631 TGGAATCATGTACCACGTTGT 57.589 42.857 0.00 0.00 0.00 3.32
1656 1693 4.000325 TCTTGGAATCATGTACCACGTTG 59.000 43.478 7.51 0.00 33.20 4.10
1657 1694 4.280436 TCTTGGAATCATGTACCACGTT 57.720 40.909 7.51 0.00 33.20 3.99
1658 1695 3.973206 TCTTGGAATCATGTACCACGT 57.027 42.857 7.51 0.00 33.20 4.49
1659 1696 6.918892 TTTATCTTGGAATCATGTACCACG 57.081 37.500 7.51 6.71 33.20 4.94
1660 1697 8.902806 TCATTTTATCTTGGAATCATGTACCAC 58.097 33.333 7.51 0.00 33.20 4.16
1661 1698 9.473007 TTCATTTTATCTTGGAATCATGTACCA 57.527 29.630 0.00 0.00 0.00 3.25
1662 1699 9.736023 GTTCATTTTATCTTGGAATCATGTACC 57.264 33.333 0.00 0.00 0.00 3.34
1665 1702 7.977853 GCTGTTCATTTTATCTTGGAATCATGT 59.022 33.333 0.00 0.00 0.00 3.21
1666 1703 8.195436 AGCTGTTCATTTTATCTTGGAATCATG 58.805 33.333 0.00 0.00 0.00 3.07
1667 1704 8.302515 AGCTGTTCATTTTATCTTGGAATCAT 57.697 30.769 0.00 0.00 0.00 2.45
1668 1705 7.707624 AGCTGTTCATTTTATCTTGGAATCA 57.292 32.000 0.00 0.00 0.00 2.57
1669 1706 8.992835 AAAGCTGTTCATTTTATCTTGGAATC 57.007 30.769 0.00 0.00 0.00 2.52
1681 1718 9.683069 CAGTGAAGTAAATAAAGCTGTTCATTT 57.317 29.630 0.00 0.00 0.00 2.32
1682 1719 8.850156 ACAGTGAAGTAAATAAAGCTGTTCATT 58.150 29.630 0.00 0.00 32.84 2.57
1683 1720 8.396272 ACAGTGAAGTAAATAAAGCTGTTCAT 57.604 30.769 0.00 0.00 32.84 2.57
1684 1721 7.801716 ACAGTGAAGTAAATAAAGCTGTTCA 57.198 32.000 0.00 0.00 32.84 3.18
1685 1722 7.113544 GCAACAGTGAAGTAAATAAAGCTGTTC 59.886 37.037 0.00 0.00 41.94 3.18
1686 1723 6.918022 GCAACAGTGAAGTAAATAAAGCTGTT 59.082 34.615 0.00 0.00 43.80 3.16
1687 1724 6.263168 AGCAACAGTGAAGTAAATAAAGCTGT 59.737 34.615 0.00 0.00 37.52 4.40
1688 1725 6.672147 AGCAACAGTGAAGTAAATAAAGCTG 58.328 36.000 0.00 0.00 0.00 4.24
1689 1726 6.884280 AGCAACAGTGAAGTAAATAAAGCT 57.116 33.333 0.00 0.00 0.00 3.74
1690 1727 9.626045 AATTAGCAACAGTGAAGTAAATAAAGC 57.374 29.630 0.00 0.00 0.00 3.51
1693 1730 9.906660 CCAAATTAGCAACAGTGAAGTAAATAA 57.093 29.630 0.00 0.00 0.00 1.40
1885 1923 7.042797 AGAAACTTTAATGACACATGCAACT 57.957 32.000 0.00 0.00 0.00 3.16
2385 2428 8.072567 GTGAAGCACATCTCAACCAAATATATC 58.927 37.037 0.00 0.00 34.08 1.63
2467 2510 9.112725 TGATGATACATGAAGTTAAACATCCAG 57.887 33.333 0.00 0.00 33.22 3.86
2480 2523 3.435457 CCCCCAAGCTGATGATACATGAA 60.435 47.826 0.00 0.00 0.00 2.57
2494 2537 0.975887 TTTTGCTTCATCCCCCAAGC 59.024 50.000 0.00 0.00 44.55 4.01
3194 3243 2.598394 TGTGCCAAAGCTGGAGGC 60.598 61.111 15.34 15.34 46.92 4.70
3373 3422 1.078143 GCCAGTGGAAGAAGCGGAT 60.078 57.895 15.20 0.00 0.00 4.18
3523 3577 2.594303 CTCGTGCCAGGTTTGCCA 60.594 61.111 0.00 0.00 37.19 4.92
3656 3710 2.360852 GGACGAGGAGGGTCACGA 60.361 66.667 0.00 0.00 36.12 4.35
3785 3839 2.125512 CTTTGAGCCCTAGCGCGT 60.126 61.111 8.43 0.00 46.67 6.01
4127 4198 6.123651 ACCCATACGCTTGGAATAAAATGTA 58.876 36.000 5.82 0.00 39.25 2.29
4185 4257 1.740296 CCACCGGTAAGCCTCAACG 60.740 63.158 6.87 0.00 0.00 4.10
4407 4479 5.223655 TGGATATGGATGGTCAAAGGTCTA 58.776 41.667 0.00 0.00 0.00 2.59
4516 4589 7.379750 AGACTGTCTGACTACCAAAAGTATTC 58.620 38.462 10.00 0.00 32.59 1.75
4661 4734 5.302313 GGGTATTAGAACTCGAGGAGACAAT 59.698 44.000 18.41 11.24 33.32 2.71
4830 4903 2.371841 AGCACAAACCCTACATGAGTCA 59.628 45.455 0.00 0.00 0.00 3.41
5024 5097 3.509575 TGCAAACTTGTCAACAGAAAGGT 59.490 39.130 0.00 0.00 0.00 3.50
5036 5109 5.764686 TGATCTTCATGTACTGCAAACTTGT 59.235 36.000 11.97 0.00 0.00 3.16
5335 5408 1.206371 ACCCTAACCTCCATTCGTTCG 59.794 52.381 0.00 0.00 0.00 3.95
5359 5432 8.345565 GCCAGTTAATTTCTGATTGGTATAGTG 58.654 37.037 10.57 0.00 35.20 2.74
5360 5433 8.052748 TGCCAGTTAATTTCTGATTGGTATAGT 58.947 33.333 10.57 0.00 35.20 2.12
5783 5869 3.747735 CGATAGGCAGAGACCCCTA 57.252 57.895 0.00 0.00 38.04 3.53
5826 5912 9.394477 GACATACAAGAAAATGTTGTAAGAACC 57.606 33.333 8.86 0.00 42.24 3.62
5919 6007 4.935352 TCATTTTGTTTCCTGGTCCAAG 57.065 40.909 0.00 0.00 0.00 3.61
6101 6190 5.796424 AGGACTTCTTAACAGGTTCGTAA 57.204 39.130 0.00 0.00 0.00 3.18
6126 6215 2.525750 AACATACGCACATTCGCAAG 57.474 45.000 0.00 0.00 0.00 4.01
6243 6332 5.743026 TCTGCAAAACGAAAATAGACACA 57.257 34.783 0.00 0.00 0.00 3.72
6349 6438 4.712337 TCTTCAACCTCTGGACTAAGGATC 59.288 45.833 0.00 0.00 36.46 3.36
6354 6443 3.008049 GCCTTCTTCAACCTCTGGACTAA 59.992 47.826 0.00 0.00 0.00 2.24
6480 6569 0.897621 TGCTTCTGCTGCTACTGCTA 59.102 50.000 0.00 0.00 40.48 3.49
6504 6593 4.103153 AGGAAGATGTTGAAGAAGGTGTCA 59.897 41.667 0.00 0.00 0.00 3.58
6529 6618 3.020984 AGTCTTTTCACCCTTTTTCGCA 58.979 40.909 0.00 0.00 0.00 5.10
6655 6744 4.646945 TCAAGAGTACCTCTCAAGCCATAG 59.353 45.833 0.00 0.00 44.98 2.23
6691 6920 4.644685 CCTCAACTTGGAAAAGAACCTGAA 59.355 41.667 0.00 0.00 0.00 3.02
6733 6962 2.228545 TATGCCCCATGCTCACAAAA 57.771 45.000 0.00 0.00 42.00 2.44
6796 7030 9.974980 TGTTCTATTTGTCATCTTATGCGTATA 57.025 29.630 0.00 0.00 0.00 1.47
6797 7031 8.765219 GTGTTCTATTTGTCATCTTATGCGTAT 58.235 33.333 0.00 0.00 0.00 3.06
6798 7032 7.762159 TGTGTTCTATTTGTCATCTTATGCGTA 59.238 33.333 0.00 0.00 0.00 4.42
6799 7033 6.593770 TGTGTTCTATTTGTCATCTTATGCGT 59.406 34.615 0.00 0.00 0.00 5.24
6800 7034 7.003939 TGTGTTCTATTTGTCATCTTATGCG 57.996 36.000 0.00 0.00 0.00 4.73
6832 7066 9.607333 TGGTATATGATGACTAAATCCTCTTCT 57.393 33.333 0.00 0.00 0.00 2.85
6865 7099 2.352127 GCACAACAGAAAAGATCCCTGC 60.352 50.000 0.00 0.00 0.00 4.85
6869 7103 6.560253 TCTAAAGCACAACAGAAAAGATCC 57.440 37.500 0.00 0.00 0.00 3.36
6903 7137 6.472016 TCTACAATGTTTGCTATCACCTTGA 58.528 36.000 0.00 0.00 0.00 3.02
6948 7213 8.237267 ACATCGAAATACATTCCACTTTCTTTC 58.763 33.333 0.00 0.00 34.34 2.62
6953 7218 6.878923 TCAGACATCGAAATACATTCCACTTT 59.121 34.615 0.00 0.00 34.34 2.66
6958 7223 6.183360 TGCTTTCAGACATCGAAATACATTCC 60.183 38.462 0.00 0.00 34.34 3.01
6969 7234 1.741706 AGGCATTGCTTTCAGACATCG 59.258 47.619 8.82 0.00 0.00 3.84
7007 7272 2.415491 GCAAGACGTAAAAATGGAGCCC 60.415 50.000 0.00 0.00 0.00 5.19
7008 7273 2.415491 GGCAAGACGTAAAAATGGAGCC 60.415 50.000 0.00 0.00 0.00 4.70
7010 7275 7.730364 ATATAGGCAAGACGTAAAAATGGAG 57.270 36.000 0.00 0.00 0.00 3.86
7021 7286 5.907197 ATGTCGAAAATATAGGCAAGACG 57.093 39.130 0.00 0.00 0.00 4.18
7045 7310 4.949856 ACCTCCATGACATGTATTTTCACC 59.050 41.667 14.26 0.00 0.00 4.02
7061 7326 9.546428 GCAAAAGCAAATATATAAAACCTCCAT 57.454 29.630 0.00 0.00 0.00 3.41
7080 7346 3.565905 ATGCACAAGAGTAGCAAAAGC 57.434 42.857 0.00 0.00 42.15 3.51
7094 7360 2.702478 AGGCTCTAGATTGCTATGCACA 59.298 45.455 4.19 0.00 38.71 4.57
7102 7368 0.839946 TTCCCCAGGCTCTAGATTGC 59.160 55.000 0.00 0.00 0.00 3.56
7103 7369 2.978278 AGATTCCCCAGGCTCTAGATTG 59.022 50.000 0.00 0.00 0.00 2.67
7149 7415 7.736893 ACTATGTGAACCCTATAATCCAGAAC 58.263 38.462 0.00 0.00 0.00 3.01
7163 7429 9.220767 AGAAATTCAGAGTTAACTATGTGAACC 57.779 33.333 25.22 16.69 36.62 3.62
7168 7434 9.220767 GGAACAGAAATTCAGAGTTAACTATGT 57.779 33.333 25.22 9.94 36.62 2.29
7220 7487 4.994852 TCCGAACATCCTCTTACTTGTTTG 59.005 41.667 0.00 0.00 32.73 2.93
7228 7495 6.350780 GGTTCTTAGTTCCGAACATCCTCTTA 60.351 42.308 13.69 0.00 40.88 2.10
7246 7513 3.072476 CCAGACCAGTTTCCAGGTTCTTA 59.928 47.826 0.00 0.00 38.50 2.10
7260 7528 0.397816 CCTAGTCCTCCCCAGACCAG 60.398 65.000 0.00 0.00 34.67 4.00
7263 7531 0.752376 CGTCCTAGTCCTCCCCAGAC 60.752 65.000 0.00 0.00 34.31 3.51
7267 7535 1.152715 CTCCGTCCTAGTCCTCCCC 60.153 68.421 0.00 0.00 0.00 4.81
7309 7577 3.057596 TCGAACATGAAGGCCAATTCAAC 60.058 43.478 11.13 3.90 42.21 3.18
7310 7578 3.153130 TCGAACATGAAGGCCAATTCAA 58.847 40.909 11.13 0.00 42.21 2.69
7319 7587 6.545504 TTTTTCTTCTCTCGAACATGAAGG 57.454 37.500 0.00 0.00 37.21 3.46
7352 7621 3.419943 TGCAAACATACTGAGCCATTCA 58.580 40.909 0.00 0.00 0.00 2.57
7377 7646 7.224949 GCCTTTGTCTGATATAACTAACCTGTC 59.775 40.741 0.00 0.00 0.00 3.51
7381 7650 6.592870 AGGCCTTTGTCTGATATAACTAACC 58.407 40.000 0.00 0.00 0.00 2.85
7382 7651 8.398665 CAAAGGCCTTTGTCTGATATAACTAAC 58.601 37.037 39.09 0.00 43.52 2.34
7398 7670 1.733526 GTGACACGCAAAGGCCTTT 59.266 52.632 25.47 25.47 36.38 3.11
7401 7673 2.954753 CTCGTGACACGCAAAGGCC 61.955 63.158 22.99 0.00 42.21 5.19
7413 7685 5.724328 AGAGCAAAATCACTTATCTCGTGA 58.276 37.500 0.00 0.00 44.59 4.35
7414 7686 6.312426 AGAAGAGCAAAATCACTTATCTCGTG 59.688 38.462 0.00 0.00 0.00 4.35
7415 7687 6.402222 AGAAGAGCAAAATCACTTATCTCGT 58.598 36.000 0.00 0.00 0.00 4.18
7424 7696 7.369803 TCACATTCTAGAAGAGCAAAATCAC 57.630 36.000 11.53 0.00 0.00 3.06
7425 7697 7.094634 GGTTCACATTCTAGAAGAGCAAAATCA 60.095 37.037 11.53 0.00 0.00 2.57
7441 7713 2.288825 TGTCTCCGACTGGTTCACATTC 60.289 50.000 0.00 0.00 36.30 2.67
7445 7717 0.038159 CCTGTCTCCGACTGGTTCAC 60.038 60.000 10.64 0.00 43.56 3.18
7455 7727 5.156355 CAACAAATTTGAATCCTGTCTCCG 58.844 41.667 24.64 0.00 0.00 4.63
7463 7735 7.083875 TCGATAGGACAACAAATTTGAATCC 57.916 36.000 24.64 23.02 0.00 3.01
7464 7736 6.688813 GCTCGATAGGACAACAAATTTGAATC 59.311 38.462 24.64 16.36 0.00 2.52
7474 7746 1.204704 CACCTGCTCGATAGGACAACA 59.795 52.381 19.43 0.00 38.71 3.33
7475 7747 1.927895 CACCTGCTCGATAGGACAAC 58.072 55.000 19.43 0.00 38.71 3.32
7476 7748 0.175760 GCACCTGCTCGATAGGACAA 59.824 55.000 19.43 0.00 38.71 3.18
7508 7781 2.124122 GGAATGACAAACCGCAAACAC 58.876 47.619 0.00 0.00 0.00 3.32
7509 7782 1.751351 TGGAATGACAAACCGCAAACA 59.249 42.857 0.00 0.00 0.00 2.83
7510 7783 2.500509 TGGAATGACAAACCGCAAAC 57.499 45.000 0.00 0.00 0.00 2.93
7513 7786 3.742433 AAATTGGAATGACAAACCGCA 57.258 38.095 0.00 0.00 33.48 5.69
7514 7787 3.363871 GCAAAATTGGAATGACAAACCGC 60.364 43.478 0.00 0.00 33.48 5.68
7515 7788 3.806521 TGCAAAATTGGAATGACAAACCG 59.193 39.130 0.00 0.00 33.48 4.44
7516 7789 5.945466 ATGCAAAATTGGAATGACAAACC 57.055 34.783 0.00 0.00 33.48 3.27
7557 7834 9.734620 CAATGTAAAGAGTGTTCTTCATTTTGA 57.265 29.630 3.04 0.00 42.80 2.69
7558 7835 8.971321 CCAATGTAAAGAGTGTTCTTCATTTTG 58.029 33.333 3.04 0.00 42.80 2.44
7559 7836 7.653311 GCCAATGTAAAGAGTGTTCTTCATTTT 59.347 33.333 3.04 0.00 42.80 1.82
7560 7837 7.014615 AGCCAATGTAAAGAGTGTTCTTCATTT 59.985 33.333 3.04 0.00 42.80 2.32
7561 7838 6.491403 AGCCAATGTAAAGAGTGTTCTTCATT 59.509 34.615 0.00 0.00 42.80 2.57
7562 7839 6.006449 AGCCAATGTAAAGAGTGTTCTTCAT 58.994 36.000 0.00 0.00 42.80 2.57
7563 7840 5.376625 AGCCAATGTAAAGAGTGTTCTTCA 58.623 37.500 0.00 0.00 42.80 3.02
7564 7841 5.948992 AGCCAATGTAAAGAGTGTTCTTC 57.051 39.130 0.00 0.00 42.80 2.87
7565 7842 6.715347 AAAGCCAATGTAAAGAGTGTTCTT 57.285 33.333 0.00 0.00 45.51 2.52
7566 7843 6.715347 AAAAGCCAATGTAAAGAGTGTTCT 57.285 33.333 0.00 0.00 34.29 3.01
7567 7844 6.978080 TGAAAAAGCCAATGTAAAGAGTGTTC 59.022 34.615 0.00 0.00 0.00 3.18
7568 7845 6.872920 TGAAAAAGCCAATGTAAAGAGTGTT 58.127 32.000 0.00 0.00 0.00 3.32
7569 7846 6.463995 TGAAAAAGCCAATGTAAAGAGTGT 57.536 33.333 0.00 0.00 0.00 3.55
7570 7847 7.951530 AATGAAAAAGCCAATGTAAAGAGTG 57.048 32.000 0.00 0.00 0.00 3.51
7571 7848 8.860088 ACTAATGAAAAAGCCAATGTAAAGAGT 58.140 29.630 0.00 0.00 0.00 3.24
7572 7849 9.696917 AACTAATGAAAAAGCCAATGTAAAGAG 57.303 29.630 0.00 0.00 0.00 2.85
7578 7855 9.830975 AACTAAAACTAATGAAAAAGCCAATGT 57.169 25.926 0.00 0.00 0.00 2.71
7580 7857 9.830975 ACAACTAAAACTAATGAAAAAGCCAAT 57.169 25.926 0.00 0.00 0.00 3.16
7581 7858 9.660180 AACAACTAAAACTAATGAAAAAGCCAA 57.340 25.926 0.00 0.00 0.00 4.52
7590 7867 9.498176 GGAGGAAGTAACAACTAAAACTAATGA 57.502 33.333 0.00 0.00 0.00 2.57
7591 7868 9.280174 TGGAGGAAGTAACAACTAAAACTAATG 57.720 33.333 0.00 0.00 0.00 1.90
7595 7872 9.856162 TTTATGGAGGAAGTAACAACTAAAACT 57.144 29.630 0.00 0.00 0.00 2.66
7627 7904 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
7628 7905 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
7629 7906 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
7630 7907 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
7631 7908 9.733219 ATTACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
7632 7909 9.733219 GATTACTAAAGTAGTGATCTAAACGCT 57.267 33.333 11.11 0.00 44.10 5.07
7640 7917 9.733219 AGCGTTTAGATTACTAAAGTAGTGATC 57.267 33.333 10.62 10.62 46.38 2.92
7641 7918 9.733219 GAGCGTTTAGATTACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
7642 7919 8.954350 AGAGCGTTTAGATTACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
7643 7920 9.570488 AAGAGCGTTTAGATTACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
7661 7938 8.674607 CCCTTTGTAAAGAAATATAAGAGCGTT 58.325 33.333 5.95 0.00 38.28 4.84
7662 7939 8.044908 TCCCTTTGTAAAGAAATATAAGAGCGT 58.955 33.333 5.95 0.00 38.28 5.07
7663 7940 8.433421 TCCCTTTGTAAAGAAATATAAGAGCG 57.567 34.615 5.95 0.00 38.28 5.03
7664 7941 9.397280 ACTCCCTTTGTAAAGAAATATAAGAGC 57.603 33.333 5.95 0.00 38.28 4.09
7669 7946 9.609346 GTGCTACTCCCTTTGTAAAGAAATATA 57.391 33.333 5.95 0.00 38.28 0.86
7670 7947 7.556635 GGTGCTACTCCCTTTGTAAAGAAATAT 59.443 37.037 5.95 0.00 38.28 1.28
7671 7948 6.882678 GGTGCTACTCCCTTTGTAAAGAAATA 59.117 38.462 5.95 0.00 38.28 1.40
7672 7949 5.710567 GGTGCTACTCCCTTTGTAAAGAAAT 59.289 40.000 5.95 0.00 38.28 2.17
7673 7950 5.067954 GGTGCTACTCCCTTTGTAAAGAAA 58.932 41.667 5.95 0.00 38.28 2.52
7674 7951 4.349930 AGGTGCTACTCCCTTTGTAAAGAA 59.650 41.667 5.95 0.00 38.28 2.52
7675 7952 3.908103 AGGTGCTACTCCCTTTGTAAAGA 59.092 43.478 5.95 0.00 38.28 2.52
7676 7953 4.287766 AGGTGCTACTCCCTTTGTAAAG 57.712 45.455 0.00 0.00 35.79 1.85
7677 7954 6.382919 AATAGGTGCTACTCCCTTTGTAAA 57.617 37.500 0.00 0.00 32.08 2.01
7678 7955 6.013206 TGAAATAGGTGCTACTCCCTTTGTAA 60.013 38.462 0.00 0.00 32.08 2.41
7679 7956 5.486063 TGAAATAGGTGCTACTCCCTTTGTA 59.514 40.000 0.00 0.00 32.08 2.41
7680 7957 4.288626 TGAAATAGGTGCTACTCCCTTTGT 59.711 41.667 0.00 0.00 32.08 2.83
7681 7958 4.843728 TGAAATAGGTGCTACTCCCTTTG 58.156 43.478 0.00 0.00 32.08 2.77
7682 7959 4.783227 TCTGAAATAGGTGCTACTCCCTTT 59.217 41.667 0.00 0.00 32.08 3.11
7683 7960 4.162509 GTCTGAAATAGGTGCTACTCCCTT 59.837 45.833 0.00 0.00 32.08 3.95
7684 7961 3.707102 GTCTGAAATAGGTGCTACTCCCT 59.293 47.826 0.00 0.00 34.74 4.20
7685 7962 3.451178 TGTCTGAAATAGGTGCTACTCCC 59.549 47.826 0.00 0.00 0.00 4.30
7686 7963 4.737855 TGTCTGAAATAGGTGCTACTCC 57.262 45.455 0.00 0.00 0.00 3.85
7687 7964 5.725362 AGTTGTCTGAAATAGGTGCTACTC 58.275 41.667 0.00 0.00 0.00 2.59
7688 7965 5.746990 AGTTGTCTGAAATAGGTGCTACT 57.253 39.130 0.00 0.00 0.00 2.57
7689 7966 6.803154 AAAGTTGTCTGAAATAGGTGCTAC 57.197 37.500 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.