Multiple sequence alignment - TraesCS4D01G067100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G067100 chr4D 100.000 6609 0 0 1 6609 42293942 42287334 0.000000e+00 12205.0
1 TraesCS4D01G067100 chr4B 95.575 3277 92 27 2926 6194 60545491 60542260 0.000000e+00 5199.0
2 TraesCS4D01G067100 chr4B 94.764 2292 81 20 656 2930 60547828 60545559 0.000000e+00 3531.0
3 TraesCS4D01G067100 chr4B 95.556 90 4 0 6451 6540 60541580 60541491 1.920000e-30 145.0
4 TraesCS4D01G067100 chr4A 93.447 3464 140 45 206 3629 557728267 557731683 0.000000e+00 5059.0
5 TraesCS4D01G067100 chr4A 93.983 2576 103 29 3630 6178 557731769 557734319 0.000000e+00 3851.0
6 TraesCS4D01G067100 chr5A 89.200 963 79 13 1672 2613 119997586 119996628 0.000000e+00 1179.0
7 TraesCS4D01G067100 chr5A 90.176 794 54 15 2673 3457 119995324 119994546 0.000000e+00 1013.0
8 TraesCS4D01G067100 chr5A 92.294 571 38 5 3720 4286 119994195 119993627 0.000000e+00 806.0
9 TraesCS4D01G067100 chr5A 89.326 356 38 0 4389 4744 119992365 119992010 1.310000e-121 448.0
10 TraesCS4D01G067100 chr5A 86.220 254 22 9 4748 5000 119967104 119966863 5.080000e-66 263.0
11 TraesCS4D01G067100 chr5A 86.719 128 13 2 928 1054 119998575 119998451 8.940000e-29 139.0
12 TraesCS4D01G067100 chr5D 91.269 733 58 5 3709 4437 114625504 114624774 0.000000e+00 994.0
13 TraesCS4D01G067100 chr5D 88.552 594 57 6 4387 4978 114624773 114624189 0.000000e+00 710.0
14 TraesCS4D01G067100 chr5D 85.145 653 74 11 928 1576 114627183 114626550 0.000000e+00 647.0
15 TraesCS4D01G067100 chr5D 96.250 320 12 0 3138 3457 114626165 114625846 5.870000e-145 525.0
16 TraesCS4D01G067100 chr5D 83.838 99 15 1 5967 6064 260103424 260103326 7.060000e-15 93.5
17 TraesCS4D01G067100 chr5B 89.577 307 31 1 4130 4435 126154426 126154120 8.040000e-104 388.0
18 TraesCS4D01G067100 chr5B 86.648 352 35 7 4651 5000 126153742 126153401 4.840000e-101 379.0
19 TraesCS4D01G067100 chr5B 93.089 246 17 0 4389 4634 126154112 126153867 1.750000e-95 361.0
20 TraesCS4D01G067100 chr5B 92.308 65 5 0 6207 6271 572604081 572604017 7.060000e-15 93.5
21 TraesCS4D01G067100 chr7D 82.883 222 19 8 6197 6401 628724680 628724461 1.460000e-41 182.0
22 TraesCS4D01G067100 chr3B 81.437 167 20 7 6197 6354 72465731 72465567 6.960000e-25 126.0
23 TraesCS4D01G067100 chr2A 79.048 210 22 9 6206 6399 60118469 60118672 2.500000e-24 124.0
24 TraesCS4D01G067100 chr3D 89.189 74 4 3 6333 6402 9302982 9302909 9.130000e-14 89.8
25 TraesCS4D01G067100 chr3D 89.583 48 1 2 6359 6402 520412 520459 2.570000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G067100 chr4D 42287334 42293942 6608 True 12205.000000 12205 100.000000 1 6609 1 chr4D.!!$R1 6608
1 TraesCS4D01G067100 chr4B 60541491 60547828 6337 True 2958.333333 5199 95.298333 656 6540 3 chr4B.!!$R1 5884
2 TraesCS4D01G067100 chr4A 557728267 557734319 6052 False 4455.000000 5059 93.715000 206 6178 2 chr4A.!!$F1 5972
3 TraesCS4D01G067100 chr5A 119992010 119998575 6565 True 717.000000 1179 89.543000 928 4744 5 chr5A.!!$R2 3816
4 TraesCS4D01G067100 chr5D 114624189 114627183 2994 True 719.000000 994 90.304000 928 4978 4 chr5D.!!$R2 4050
5 TraesCS4D01G067100 chr5B 126153401 126154426 1025 True 376.000000 388 89.771333 4130 5000 3 chr5B.!!$R2 870

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.038159 CTCGTCCAGCTCGAACCTTT 60.038 55.000 0.00 0.0 36.89 3.11 F
159 160 0.106217 CCCACTCTCCTCCTCTCCTC 60.106 65.000 0.00 0.0 0.00 3.71 F
194 195 0.107312 AGCAGAGCCACAAGCCATAG 60.107 55.000 0.00 0.0 45.47 2.23 F
201 202 0.109342 CCACAAGCCATAGCCCCTAG 59.891 60.000 0.00 0.0 41.25 3.02 F
520 524 0.118346 TTTACTGCCTCTCCCCCTCA 59.882 55.000 0.00 0.0 0.00 3.86 F
819 823 0.673022 GGTCTGCTTCTGCTGTCCTG 60.673 60.000 0.00 0.0 40.83 3.86 F
1495 1654 0.834687 TTGGGGTACTCCGTTGCTCT 60.835 55.000 7.43 0.0 36.01 4.09 F
2806 4398 1.975660 TTAGGGGTCAACTGTGCAAC 58.024 50.000 0.00 0.0 37.35 4.17 F
4269 6104 3.384816 TGCTTATGCACATCGGAGG 57.615 52.632 0.00 0.0 45.31 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1015 1020 1.207329 GGAGACGCCAAGATAACCAGT 59.793 52.381 0.00 0.0 36.34 4.00 R
1209 1368 2.753043 AAGCCCGCATCAGCAAGG 60.753 61.111 0.00 0.0 42.27 3.61 R
1805 2104 3.250744 TCCTCTTACATTTCGAGTTGCG 58.749 45.455 0.00 0.0 42.69 4.85 R
2247 2558 9.411189 TCAGGAATTCATATCAAACATCATCAA 57.589 29.630 7.93 0.0 0.00 2.57 R
2555 2871 2.077413 ACTCTTGCAGCGAGAAGAAG 57.923 50.000 13.69 4.6 32.87 2.85 R
2613 2929 2.156098 TCCACATGTAAAGTTTCCGGC 58.844 47.619 0.00 0.0 0.00 6.13 R
2953 4618 2.766828 AGGGTGCTAAGTATCTCCACAC 59.233 50.000 0.00 0.0 0.00 3.82 R
4625 7619 2.030893 ACATCCAACACAGCAATGTTCG 60.031 45.455 2.82 0.0 40.89 3.95 R
6157 9290 0.742635 GCTCTTTCCCTCTTGCGGAG 60.743 60.000 0.20 0.2 41.51 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.815840 TTTTTCTGTACATGGACTGAATCAA 57.184 32.000 25.69 19.34 37.20 2.57
26 27 7.439157 TTTTCTGTACATGGACTGAATCAAG 57.561 36.000 25.69 7.05 37.20 3.02
27 28 6.358974 TTCTGTACATGGACTGAATCAAGA 57.641 37.500 22.55 7.05 33.78 3.02
28 29 6.550938 TCTGTACATGGACTGAATCAAGAT 57.449 37.500 14.77 0.00 0.00 2.40
29 30 6.343703 TCTGTACATGGACTGAATCAAGATG 58.656 40.000 14.77 0.00 0.00 2.90
30 31 4.877823 TGTACATGGACTGAATCAAGATGC 59.122 41.667 10.05 0.00 0.00 3.91
31 32 4.232188 ACATGGACTGAATCAAGATGCT 57.768 40.909 0.00 0.00 0.00 3.79
32 33 4.197750 ACATGGACTGAATCAAGATGCTC 58.802 43.478 0.00 0.00 0.00 4.26
33 34 3.272574 TGGACTGAATCAAGATGCTCC 57.727 47.619 0.00 0.00 0.00 4.70
34 35 2.208431 GGACTGAATCAAGATGCTCCG 58.792 52.381 0.00 0.00 0.00 4.63
35 36 2.159043 GGACTGAATCAAGATGCTCCGA 60.159 50.000 0.00 0.00 0.00 4.55
36 37 3.525537 GACTGAATCAAGATGCTCCGAA 58.474 45.455 0.00 0.00 0.00 4.30
37 38 3.935203 GACTGAATCAAGATGCTCCGAAA 59.065 43.478 0.00 0.00 0.00 3.46
38 39 3.937706 ACTGAATCAAGATGCTCCGAAAG 59.062 43.478 0.00 0.00 0.00 2.62
39 40 4.186926 CTGAATCAAGATGCTCCGAAAGA 58.813 43.478 0.00 0.00 0.00 2.52
40 41 4.578871 TGAATCAAGATGCTCCGAAAGAA 58.421 39.130 0.00 0.00 0.00 2.52
41 42 5.003160 TGAATCAAGATGCTCCGAAAGAAA 58.997 37.500 0.00 0.00 0.00 2.52
42 43 5.473162 TGAATCAAGATGCTCCGAAAGAAAA 59.527 36.000 0.00 0.00 0.00 2.29
43 44 5.557891 ATCAAGATGCTCCGAAAGAAAAG 57.442 39.130 0.00 0.00 0.00 2.27
44 45 4.641396 TCAAGATGCTCCGAAAGAAAAGA 58.359 39.130 0.00 0.00 0.00 2.52
45 46 5.063204 TCAAGATGCTCCGAAAGAAAAGAA 58.937 37.500 0.00 0.00 0.00 2.52
46 47 5.530915 TCAAGATGCTCCGAAAGAAAAGAAA 59.469 36.000 0.00 0.00 0.00 2.52
47 48 6.039270 TCAAGATGCTCCGAAAGAAAAGAAAA 59.961 34.615 0.00 0.00 0.00 2.29
48 49 6.391227 AGATGCTCCGAAAGAAAAGAAAAA 57.609 33.333 0.00 0.00 0.00 1.94
64 65 3.980583 AAAAACTCGTCCAGCTCGA 57.019 47.368 0.00 0.00 35.96 4.04
65 66 2.234300 AAAAACTCGTCCAGCTCGAA 57.766 45.000 0.00 0.00 36.89 3.71
66 67 1.499049 AAAACTCGTCCAGCTCGAAC 58.501 50.000 0.00 0.00 36.89 3.95
67 68 0.319641 AAACTCGTCCAGCTCGAACC 60.320 55.000 0.00 0.00 36.89 3.62
68 69 1.179814 AACTCGTCCAGCTCGAACCT 61.180 55.000 0.00 0.00 36.89 3.50
69 70 1.179814 ACTCGTCCAGCTCGAACCTT 61.180 55.000 0.00 0.00 36.89 3.50
70 71 0.038159 CTCGTCCAGCTCGAACCTTT 60.038 55.000 0.00 0.00 36.89 3.11
71 72 0.391597 TCGTCCAGCTCGAACCTTTT 59.608 50.000 0.00 0.00 34.36 2.27
72 73 0.512952 CGTCCAGCTCGAACCTTTTG 59.487 55.000 0.00 0.00 0.00 2.44
73 74 0.238553 GTCCAGCTCGAACCTTTTGC 59.761 55.000 0.00 0.00 0.00 3.68
74 75 0.889186 TCCAGCTCGAACCTTTTGCC 60.889 55.000 0.00 0.00 0.00 4.52
75 76 1.581447 CAGCTCGAACCTTTTGCCC 59.419 57.895 0.00 0.00 0.00 5.36
76 77 1.150536 AGCTCGAACCTTTTGCCCA 59.849 52.632 0.00 0.00 0.00 5.36
77 78 1.172812 AGCTCGAACCTTTTGCCCAC 61.173 55.000 0.00 0.00 0.00 4.61
78 79 1.452145 GCTCGAACCTTTTGCCCACA 61.452 55.000 0.00 0.00 0.00 4.17
79 80 0.310854 CTCGAACCTTTTGCCCACAC 59.689 55.000 0.00 0.00 0.00 3.82
80 81 1.104577 TCGAACCTTTTGCCCACACC 61.105 55.000 0.00 0.00 0.00 4.16
81 82 1.745890 GAACCTTTTGCCCACACCC 59.254 57.895 0.00 0.00 0.00 4.61
82 83 1.754380 GAACCTTTTGCCCACACCCC 61.754 60.000 0.00 0.00 0.00 4.95
83 84 2.201210 CCTTTTGCCCACACCCCT 59.799 61.111 0.00 0.00 0.00 4.79
84 85 1.459348 CCTTTTGCCCACACCCCTT 60.459 57.895 0.00 0.00 0.00 3.95
85 86 1.471829 CCTTTTGCCCACACCCCTTC 61.472 60.000 0.00 0.00 0.00 3.46
86 87 0.469892 CTTTTGCCCACACCCCTTCT 60.470 55.000 0.00 0.00 0.00 2.85
87 88 0.758685 TTTTGCCCACACCCCTTCTG 60.759 55.000 0.00 0.00 0.00 3.02
88 89 1.943730 TTTGCCCACACCCCTTCTGT 61.944 55.000 0.00 0.00 0.00 3.41
89 90 1.943730 TTGCCCACACCCCTTCTGTT 61.944 55.000 0.00 0.00 0.00 3.16
90 91 1.603739 GCCCACACCCCTTCTGTTC 60.604 63.158 0.00 0.00 0.00 3.18
91 92 1.074951 CCCACACCCCTTCTGTTCC 59.925 63.158 0.00 0.00 0.00 3.62
92 93 1.302511 CCACACCCCTTCTGTTCCG 60.303 63.158 0.00 0.00 0.00 4.30
93 94 1.450211 CACACCCCTTCTGTTCCGT 59.550 57.895 0.00 0.00 0.00 4.69
94 95 0.602905 CACACCCCTTCTGTTCCGTC 60.603 60.000 0.00 0.00 0.00 4.79
95 96 0.763223 ACACCCCTTCTGTTCCGTCT 60.763 55.000 0.00 0.00 0.00 4.18
96 97 1.263356 CACCCCTTCTGTTCCGTCTA 58.737 55.000 0.00 0.00 0.00 2.59
97 98 1.067071 CACCCCTTCTGTTCCGTCTAC 60.067 57.143 0.00 0.00 0.00 2.59
98 99 0.535797 CCCCTTCTGTTCCGTCTACC 59.464 60.000 0.00 0.00 0.00 3.18
99 100 0.172803 CCCTTCTGTTCCGTCTACCG 59.827 60.000 0.00 0.00 0.00 4.02
122 123 2.863988 CCCCCACCCCTGTCCTTT 60.864 66.667 0.00 0.00 0.00 3.11
123 124 2.763902 CCCCACCCCTGTCCTTTC 59.236 66.667 0.00 0.00 0.00 2.62
124 125 2.763902 CCCACCCCTGTCCTTTCC 59.236 66.667 0.00 0.00 0.00 3.13
125 126 2.763902 CCACCCCTGTCCTTTCCC 59.236 66.667 0.00 0.00 0.00 3.97
126 127 2.351276 CACCCCTGTCCTTTCCCG 59.649 66.667 0.00 0.00 0.00 5.14
127 128 2.206036 ACCCCTGTCCTTTCCCGA 59.794 61.111 0.00 0.00 0.00 5.14
128 129 2.222013 ACCCCTGTCCTTTCCCGAC 61.222 63.158 0.00 0.00 0.00 4.79
129 130 1.918800 CCCCTGTCCTTTCCCGACT 60.919 63.158 0.00 0.00 0.00 4.18
130 131 1.597461 CCCTGTCCTTTCCCGACTC 59.403 63.158 0.00 0.00 0.00 3.36
131 132 1.597461 CCTGTCCTTTCCCGACTCC 59.403 63.158 0.00 0.00 0.00 3.85
132 133 0.905337 CCTGTCCTTTCCCGACTCCT 60.905 60.000 0.00 0.00 0.00 3.69
133 134 0.533032 CTGTCCTTTCCCGACTCCTC 59.467 60.000 0.00 0.00 0.00 3.71
134 135 0.903454 TGTCCTTTCCCGACTCCTCC 60.903 60.000 0.00 0.00 0.00 4.30
135 136 1.305887 TCCTTTCCCGACTCCTCCC 60.306 63.158 0.00 0.00 0.00 4.30
136 137 2.368011 CCTTTCCCGACTCCTCCCC 61.368 68.421 0.00 0.00 0.00 4.81
137 138 2.285144 TTTCCCGACTCCTCCCCC 60.285 66.667 0.00 0.00 0.00 5.40
138 139 3.182717 TTTCCCGACTCCTCCCCCA 62.183 63.158 0.00 0.00 0.00 4.96
139 140 3.918328 TTCCCGACTCCTCCCCCAC 62.918 68.421 0.00 0.00 0.00 4.61
143 144 4.348495 GACTCCTCCCCCACCCCA 62.348 72.222 0.00 0.00 0.00 4.96
144 145 4.677151 ACTCCTCCCCCACCCCAC 62.677 72.222 0.00 0.00 0.00 4.61
145 146 4.354943 CTCCTCCCCCACCCCACT 62.355 72.222 0.00 0.00 0.00 4.00
146 147 4.348495 TCCTCCCCCACCCCACTC 62.348 72.222 0.00 0.00 0.00 3.51
147 148 4.354943 CCTCCCCCACCCCACTCT 62.355 72.222 0.00 0.00 0.00 3.24
148 149 2.689034 CTCCCCCACCCCACTCTC 60.689 72.222 0.00 0.00 0.00 3.20
149 150 4.348495 TCCCCCACCCCACTCTCC 62.348 72.222 0.00 0.00 0.00 3.71
150 151 4.354943 CCCCCACCCCACTCTCCT 62.355 72.222 0.00 0.00 0.00 3.69
151 152 2.689034 CCCCACCCCACTCTCCTC 60.689 72.222 0.00 0.00 0.00 3.71
152 153 2.689034 CCCACCCCACTCTCCTCC 60.689 72.222 0.00 0.00 0.00 4.30
153 154 2.452114 CCACCCCACTCTCCTCCT 59.548 66.667 0.00 0.00 0.00 3.69
154 155 1.687493 CCACCCCACTCTCCTCCTC 60.687 68.421 0.00 0.00 0.00 3.71
155 156 1.390125 CACCCCACTCTCCTCCTCT 59.610 63.158 0.00 0.00 0.00 3.69
156 157 0.686112 CACCCCACTCTCCTCCTCTC 60.686 65.000 0.00 0.00 0.00 3.20
157 158 1.075600 CCCCACTCTCCTCCTCTCC 60.076 68.421 0.00 0.00 0.00 3.71
158 159 1.589399 CCCCACTCTCCTCCTCTCCT 61.589 65.000 0.00 0.00 0.00 3.69
159 160 0.106217 CCCACTCTCCTCCTCTCCTC 60.106 65.000 0.00 0.00 0.00 3.71
160 161 0.465460 CCACTCTCCTCCTCTCCTCG 60.465 65.000 0.00 0.00 0.00 4.63
161 162 1.101049 CACTCTCCTCCTCTCCTCGC 61.101 65.000 0.00 0.00 0.00 5.03
162 163 1.528309 CTCTCCTCCTCTCCTCGCC 60.528 68.421 0.00 0.00 0.00 5.54
163 164 1.994885 CTCTCCTCCTCTCCTCGCCT 61.995 65.000 0.00 0.00 0.00 5.52
164 165 1.528309 CTCCTCCTCTCCTCGCCTC 60.528 68.421 0.00 0.00 0.00 4.70
165 166 1.994885 CTCCTCCTCTCCTCGCCTCT 61.995 65.000 0.00 0.00 0.00 3.69
166 167 1.528309 CCTCCTCTCCTCGCCTCTC 60.528 68.421 0.00 0.00 0.00 3.20
167 168 1.528309 CTCCTCTCCTCGCCTCTCC 60.528 68.421 0.00 0.00 0.00 3.71
168 169 2.520741 CCTCTCCTCGCCTCTCCC 60.521 72.222 0.00 0.00 0.00 4.30
169 170 2.520741 CTCTCCTCGCCTCTCCCC 60.521 72.222 0.00 0.00 0.00 4.81
170 171 3.347590 TCTCCTCGCCTCTCCCCA 61.348 66.667 0.00 0.00 0.00 4.96
171 172 2.123077 CTCCTCGCCTCTCCCCAT 60.123 66.667 0.00 0.00 0.00 4.00
172 173 1.764054 CTCCTCGCCTCTCCCCATT 60.764 63.158 0.00 0.00 0.00 3.16
173 174 2.037620 CTCCTCGCCTCTCCCCATTG 62.038 65.000 0.00 0.00 0.00 2.82
174 175 2.507944 CTCGCCTCTCCCCATTGG 59.492 66.667 0.00 0.00 0.00 3.16
175 176 2.040442 TCGCCTCTCCCCATTGGA 59.960 61.111 3.62 0.00 42.41 3.53
182 183 3.001514 TCCCCATTGGAGCAGAGC 58.998 61.111 3.62 0.00 38.61 4.09
183 184 2.123982 CCCCATTGGAGCAGAGCC 60.124 66.667 3.62 0.00 35.39 4.70
184 185 2.679092 CCCATTGGAGCAGAGCCA 59.321 61.111 3.62 0.00 0.00 4.75
185 186 1.751927 CCCATTGGAGCAGAGCCAC 60.752 63.158 3.62 0.00 34.56 5.01
186 187 1.001764 CCATTGGAGCAGAGCCACA 60.002 57.895 0.00 0.00 34.56 4.17
187 188 0.609957 CCATTGGAGCAGAGCCACAA 60.610 55.000 0.00 0.00 34.56 3.33
188 189 0.809385 CATTGGAGCAGAGCCACAAG 59.191 55.000 0.00 0.00 34.56 3.16
189 190 0.964358 ATTGGAGCAGAGCCACAAGC 60.964 55.000 0.00 0.00 44.25 4.01
190 191 2.749441 GGAGCAGAGCCACAAGCC 60.749 66.667 0.00 0.00 45.47 4.35
191 192 2.033141 GAGCAGAGCCACAAGCCA 59.967 61.111 0.00 0.00 45.47 4.75
192 193 1.378250 GAGCAGAGCCACAAGCCAT 60.378 57.895 0.00 0.00 45.47 4.40
193 194 0.107508 GAGCAGAGCCACAAGCCATA 60.108 55.000 0.00 0.00 45.47 2.74
194 195 0.107312 AGCAGAGCCACAAGCCATAG 60.107 55.000 0.00 0.00 45.47 2.23
195 196 1.722636 GCAGAGCCACAAGCCATAGC 61.723 60.000 0.00 0.00 45.47 2.97
196 197 1.099879 CAGAGCCACAAGCCATAGCC 61.100 60.000 0.00 0.00 45.47 3.93
197 198 1.825622 GAGCCACAAGCCATAGCCC 60.826 63.158 0.00 0.00 45.47 5.19
198 199 2.834968 GCCACAAGCCATAGCCCC 60.835 66.667 0.00 0.00 41.25 5.80
199 200 3.010144 CCACAAGCCATAGCCCCT 58.990 61.111 0.00 0.00 41.25 4.79
200 201 1.994885 GCCACAAGCCATAGCCCCTA 61.995 60.000 0.00 0.00 41.25 3.53
201 202 0.109342 CCACAAGCCATAGCCCCTAG 59.891 60.000 0.00 0.00 41.25 3.02
202 203 0.109342 CACAAGCCATAGCCCCTAGG 59.891 60.000 0.06 0.06 41.25 3.02
233 234 3.195698 GCCATCTCCGGCGACAAC 61.196 66.667 9.30 0.00 43.52 3.32
273 274 3.480133 CCCGTCCACCATCCTCCC 61.480 72.222 0.00 0.00 0.00 4.30
298 299 1.745115 CGCAGCTTCCCGGATTTCA 60.745 57.895 0.73 0.00 0.00 2.69
300 301 1.982073 GCAGCTTCCCGGATTTCACG 61.982 60.000 0.73 0.00 0.00 4.35
326 327 2.807895 CGTACCGGACCTGCAACG 60.808 66.667 9.46 2.19 0.00 4.10
363 364 1.298667 CGTTCCCGGGGAGTCAATT 59.701 57.895 23.50 0.00 31.21 2.32
380 381 1.614241 ATTCGCTCCCTAACACGCCT 61.614 55.000 0.00 0.00 0.00 5.52
384 385 0.321298 GCTCCCTAACACGCCTTCAA 60.321 55.000 0.00 0.00 0.00 2.69
389 390 2.595386 CCTAACACGCCTTCAATTTGC 58.405 47.619 0.00 0.00 0.00 3.68
390 391 2.595386 CTAACACGCCTTCAATTTGCC 58.405 47.619 0.00 0.00 0.00 4.52
406 408 6.536582 TCAATTTGCCTTGTTTTTCGATTGAA 59.463 30.769 0.00 0.00 30.64 2.69
408 410 6.917217 TTTGCCTTGTTTTTCGATTGAATT 57.083 29.167 0.00 0.00 33.20 2.17
409 411 5.903764 TGCCTTGTTTTTCGATTGAATTG 57.096 34.783 0.00 0.00 33.20 2.32
412 414 6.536582 TGCCTTGTTTTTCGATTGAATTGAAA 59.463 30.769 14.88 14.88 40.08 2.69
413 415 7.226325 TGCCTTGTTTTTCGATTGAATTGAAAT 59.774 29.630 18.46 0.00 41.10 2.17
414 416 7.741652 GCCTTGTTTTTCGATTGAATTGAAATC 59.258 33.333 18.46 15.01 41.10 2.17
415 417 8.763356 CCTTGTTTTTCGATTGAATTGAAATCA 58.237 29.630 18.46 16.81 41.10 2.57
416 418 9.787626 CTTGTTTTTCGATTGAATTGAAATCAG 57.212 29.630 18.46 10.04 41.10 2.90
417 419 8.870160 TGTTTTTCGATTGAATTGAAATCAGT 57.130 26.923 18.46 0.00 41.10 3.41
418 420 9.311916 TGTTTTTCGATTGAATTGAAATCAGTT 57.688 25.926 18.46 0.00 41.10 3.16
433 435 1.148310 CAGTTATTATGCGCCCTCCG 58.852 55.000 4.18 0.00 40.75 4.63
461 465 0.397254 ACGGAGTCGGAATCCATCCT 60.397 55.000 22.76 0.82 46.98 3.24
505 509 2.092592 CGCCCCATCCCCCTATATTTAC 60.093 54.545 0.00 0.00 0.00 2.01
512 516 4.503685 TCCCCCTATATTTACTGCCTCT 57.496 45.455 0.00 0.00 0.00 3.69
516 520 3.519913 CCCTATATTTACTGCCTCTCCCC 59.480 52.174 0.00 0.00 0.00 4.81
517 521 3.519913 CCTATATTTACTGCCTCTCCCCC 59.480 52.174 0.00 0.00 0.00 5.40
518 522 2.889522 TATTTACTGCCTCTCCCCCT 57.110 50.000 0.00 0.00 0.00 4.79
519 523 1.512735 ATTTACTGCCTCTCCCCCTC 58.487 55.000 0.00 0.00 0.00 4.30
520 524 0.118346 TTTACTGCCTCTCCCCCTCA 59.882 55.000 0.00 0.00 0.00 3.86
522 526 2.531483 TACTGCCTCTCCCCCTCACC 62.531 65.000 0.00 0.00 0.00 4.02
523 527 3.615811 TGCCTCTCCCCCTCACCT 61.616 66.667 0.00 0.00 0.00 4.00
524 528 3.086600 GCCTCTCCCCCTCACCTG 61.087 72.222 0.00 0.00 0.00 4.00
525 529 2.780693 CCTCTCCCCCTCACCTGA 59.219 66.667 0.00 0.00 0.00 3.86
527 531 1.687493 CTCTCCCCCTCACCTGACC 60.687 68.421 0.00 0.00 0.00 4.02
528 532 2.689034 CTCCCCCTCACCTGACCC 60.689 72.222 0.00 0.00 0.00 4.46
529 533 4.715130 TCCCCCTCACCTGACCCG 62.715 72.222 0.00 0.00 0.00 5.28
693 697 1.074090 TCCACTGACCCTCCACCAA 60.074 57.895 0.00 0.00 0.00 3.67
749 753 1.134371 GGAGGGTTTCCGAGGATTGAG 60.134 57.143 0.00 0.00 35.91 3.02
750 754 1.555533 GAGGGTTTCCGAGGATTGAGT 59.444 52.381 0.00 0.00 38.33 3.41
819 823 0.673022 GGTCTGCTTCTGCTGTCCTG 60.673 60.000 0.00 0.00 40.83 3.86
851 855 3.067106 ACGTGTAGGCTCAGTTTGATTG 58.933 45.455 0.00 0.00 0.00 2.67
852 856 3.244078 ACGTGTAGGCTCAGTTTGATTGA 60.244 43.478 0.00 0.00 0.00 2.57
853 857 3.935203 CGTGTAGGCTCAGTTTGATTGAT 59.065 43.478 0.00 0.00 0.00 2.57
854 858 4.393062 CGTGTAGGCTCAGTTTGATTGATT 59.607 41.667 0.00 0.00 0.00 2.57
866 870 7.877612 TCAGTTTGATTGATTCTACTGCTGTAA 59.122 33.333 4.91 0.00 37.50 2.41
867 871 8.671921 CAGTTTGATTGATTCTACTGCTGTAAT 58.328 33.333 4.91 0.00 33.81 1.89
978 983 8.276060 TCGACCTTTCGTTGAAAAATAAAATG 57.724 30.769 0.00 0.00 46.01 2.32
1015 1020 3.054139 AGCCTTGATGGTGAAGAGCAATA 60.054 43.478 0.00 0.00 38.35 1.90
1074 1211 1.272147 GGGCCAACTGAGAAGGATGTT 60.272 52.381 4.39 0.00 0.00 2.71
1077 1214 2.227388 GCCAACTGAGAAGGATGTTGTG 59.773 50.000 0.00 0.00 38.35 3.33
1209 1368 5.178623 TGTTGTTATTGGTGTCGATCAGTTC 59.821 40.000 0.00 0.00 0.00 3.01
1495 1654 0.834687 TTGGGGTACTCCGTTGCTCT 60.835 55.000 7.43 0.00 36.01 4.09
1697 1963 6.170675 ACTGTCGCTGTTTTATGAGATTTC 57.829 37.500 0.00 0.00 0.00 2.17
1698 1964 5.934625 ACTGTCGCTGTTTTATGAGATTTCT 59.065 36.000 0.00 0.00 0.00 2.52
1699 1965 7.097192 ACTGTCGCTGTTTTATGAGATTTCTA 58.903 34.615 0.00 0.00 0.00 2.10
1700 1966 7.766278 ACTGTCGCTGTTTTATGAGATTTCTAT 59.234 33.333 0.00 0.00 0.00 1.98
1701 1967 8.131455 TGTCGCTGTTTTATGAGATTTCTATC 57.869 34.615 0.00 0.00 0.00 2.08
1702 1968 7.981789 TGTCGCTGTTTTATGAGATTTCTATCT 59.018 33.333 0.00 0.00 43.85 1.98
1703 1969 9.464714 GTCGCTGTTTTATGAGATTTCTATCTA 57.535 33.333 0.00 0.00 41.23 1.98
1805 2104 2.699954 CTATGTGTGGGTCCAAGACAC 58.300 52.381 0.00 4.89 40.38 3.67
2247 2558 7.485913 GCTCGTGAATCATTTCATAACATGTTT 59.514 33.333 17.78 1.87 43.49 2.83
2466 2782 8.974060 TGTCAATATTCTATGGACTAAAACCC 57.026 34.615 3.91 0.00 0.00 4.11
2555 2871 2.004733 GGGGTGTACTCAAACGTATGC 58.995 52.381 0.00 0.00 0.00 3.14
2613 2929 2.480073 CGCACATGCATTTTTAGGGAGG 60.480 50.000 0.00 0.00 42.21 4.30
2630 4213 2.433436 GAGGCCGGAAACTTTACATGT 58.567 47.619 5.05 2.69 0.00 3.21
2635 4218 3.670625 CCGGAAACTTTACATGTGGAGA 58.329 45.455 9.11 0.00 0.00 3.71
2661 4244 5.803020 ACAGAACAAGAGAATATTTCGCC 57.197 39.130 0.00 0.00 34.02 5.54
2733 4316 8.444715 GTTGACACCAAATGTAACGATATGTTA 58.555 33.333 0.00 0.00 43.56 2.41
2748 4340 9.507329 AACGATATGTTATCTGCCATTTATCTT 57.493 29.630 0.00 0.00 39.61 2.40
2751 4343 9.678260 GATATGTTATCTGCCATTTATCTTCCT 57.322 33.333 0.00 0.00 0.00 3.36
2802 4394 4.153475 CGTATTGTTTAGGGGTCAACTGTG 59.847 45.833 0.00 0.00 0.00 3.66
2806 4398 1.975660 TTAGGGGTCAACTGTGCAAC 58.024 50.000 0.00 0.00 37.35 4.17
2864 4456 9.639601 AAGTAAAGAAAACAAGAGAACCAAAAG 57.360 29.630 0.00 0.00 0.00 2.27
2953 4618 5.406780 TGGGTAAATAAAACAAATTGCAGCG 59.593 36.000 0.00 0.00 0.00 5.18
3641 5425 8.630054 AAGCACACCATTTGTTATCTTACTAA 57.370 30.769 0.00 0.00 35.67 2.24
3642 5426 8.807948 AGCACACCATTTGTTATCTTACTAAT 57.192 30.769 0.00 0.00 35.67 1.73
3773 5603 5.007385 AGTTCACGTGTATGGAACCTATC 57.993 43.478 16.51 0.00 41.32 2.08
4031 5861 9.719355 TTTCATTCTTCTTAGTAATGTGTGCTA 57.281 29.630 0.00 0.00 33.35 3.49
4269 6104 3.384816 TGCTTATGCACATCGGAGG 57.615 52.632 0.00 0.00 45.31 4.30
4625 7619 1.208052 TGGAAGTACATCTGCTCCTGC 59.792 52.381 0.00 0.00 40.20 4.85
4725 7827 4.929211 GGGTTGGACATTTGTTTCAATAGC 59.071 41.667 4.55 0.00 0.00 2.97
4815 7917 1.863454 CTTGATGAGCTGGCATCGTAC 59.137 52.381 10.00 0.00 45.93 3.67
4831 7933 1.641577 GTACCAAGCTAAGCCTGACG 58.358 55.000 0.00 0.00 0.00 4.35
4858 7960 2.655090 TGTGCTTCCTGTTCATGGAA 57.345 45.000 0.00 0.00 40.85 3.53
5218 8324 1.816835 TCAGGTACTCTTGTGCTACCG 59.183 52.381 0.00 0.00 34.60 4.02
5352 8470 6.718912 TCATTGGAAGTATGGTTTGTCATGAA 59.281 34.615 0.00 0.00 0.00 2.57
5431 8549 3.763057 ACCCTGTTTTATGTTGGGAGAC 58.237 45.455 3.13 0.00 40.23 3.36
5432 8550 3.397955 ACCCTGTTTTATGTTGGGAGACT 59.602 43.478 3.13 0.00 40.23 3.24
5525 8645 1.603456 TTTCCTGCTTGATGTGCGAA 58.397 45.000 0.00 0.00 0.00 4.70
5603 8725 1.956043 CCGCAGCCAAAACAAGCTA 59.044 52.632 0.00 0.00 37.18 3.32
5651 8773 1.614385 CAACGCGTCGTGAAGATACT 58.386 50.000 14.44 0.00 39.99 2.12
5673 8795 1.417890 AGGATAGGACAATTCCAGCGG 59.582 52.381 0.00 0.00 45.72 5.52
5694 8816 5.061435 GCGGAGAGCTTTCAATTTTTCATTC 59.939 40.000 6.59 0.00 44.04 2.67
5750 8872 3.069443 CCATTGTAGGCCAACTTTTGTGT 59.931 43.478 5.01 0.00 35.44 3.72
5751 8873 3.791973 TTGTAGGCCAACTTTTGTGTG 57.208 42.857 5.01 0.00 0.00 3.82
5752 8874 1.407258 TGTAGGCCAACTTTTGTGTGC 59.593 47.619 5.01 0.00 0.00 4.57
5753 8875 1.681264 GTAGGCCAACTTTTGTGTGCT 59.319 47.619 5.01 0.00 32.44 4.40
5755 8877 1.153597 GGCCAACTTTTGTGTGCTGC 61.154 55.000 0.00 0.00 32.44 5.25
5756 8878 1.481819 GCCAACTTTTGTGTGCTGCG 61.482 55.000 0.00 0.00 0.00 5.18
5757 8879 0.871163 CCAACTTTTGTGTGCTGCGG 60.871 55.000 0.00 0.00 0.00 5.69
5831 8953 3.342719 TGCTGTTTGCGATCTTGGAATA 58.657 40.909 0.00 0.00 46.63 1.75
6060 9193 7.097168 GCGGATACTATTTACAATTGCGTTTTC 60.097 37.037 5.05 0.00 0.00 2.29
6061 9194 7.906010 CGGATACTATTTACAATTGCGTTTTCA 59.094 33.333 5.05 0.00 0.00 2.69
6141 9274 7.170998 GGATTTTTAGATTTCGAATAGCCGAGA 59.829 37.037 0.00 0.00 39.90 4.04
6142 9275 8.608844 ATTTTTAGATTTCGAATAGCCGAGAT 57.391 30.769 0.00 0.00 39.90 2.75
6155 9288 8.343366 CGAATAGCCGAGATATAGCATAACTAA 58.657 37.037 0.00 0.00 33.57 2.24
6157 9290 9.804758 AATAGCCGAGATATAGCATAACTAAAC 57.195 33.333 0.00 0.00 33.57 2.01
6200 9351 9.899226 AGCATGAACTTTTAATAAAGAAGTGTC 57.101 29.630 0.00 0.97 42.78 3.67
6204 9355 8.564574 TGAACTTTTAATAAAGAAGTGTCGCAT 58.435 29.630 4.77 0.00 42.78 4.73
6212 9363 2.771089 AGAAGTGTCGCATGAACACAT 58.229 42.857 24.85 17.45 36.89 3.21
6214 9365 2.168326 AGTGTCGCATGAACACATGA 57.832 45.000 24.85 0.00 42.56 3.07
6218 9369 2.032117 TGTCGCATGAACACATGACAAC 60.032 45.455 13.30 8.16 42.56 3.32
6225 9376 4.630894 TGAACACATGACAACTCCAAAC 57.369 40.909 0.00 0.00 0.00 2.93
6254 9434 6.469139 TTATGTCAAATTTAGTGACGCGAA 57.531 33.333 15.93 0.00 46.89 4.70
6268 9448 1.732259 ACGCGAAGATGGCAACTTTAG 59.268 47.619 15.93 9.88 37.61 1.85
6270 9450 2.159627 CGCGAAGATGGCAACTTTAGTT 59.840 45.455 11.52 0.00 39.12 2.24
6315 9818 8.785329 TTTTCTGATGGCAAGTTTTAGTTTTT 57.215 26.923 0.00 0.00 0.00 1.94
6395 9905 5.097529 GCACATGTGACACTTATCATTTGG 58.902 41.667 29.80 0.00 0.00 3.28
6402 9912 7.825681 TGTGACACTTATCATTTGGGTTAATG 58.174 34.615 7.20 0.00 36.95 1.90
6421 9931 7.282450 GGTTAATGAATTGTTCACCTACTAGGG 59.718 40.741 7.06 0.00 43.48 3.53
6429 9939 3.185880 TCACCTACTAGGGTTTCTGCT 57.814 47.619 7.06 0.00 40.58 4.24
6527 10086 9.624697 CTACTTTTGCACATGTACATTTACAAT 57.375 29.630 5.37 0.00 41.64 2.71
6549 10108 9.899661 ACAATATAATAGTTTTACTGTGAGCCA 57.100 29.630 0.00 0.00 0.00 4.75
6552 10111 5.567138 AATAGTTTTACTGTGAGCCATGC 57.433 39.130 0.00 0.00 0.00 4.06
6553 10112 3.146104 AGTTTTACTGTGAGCCATGCT 57.854 42.857 0.00 0.00 43.88 3.79
6554 10113 4.286297 AGTTTTACTGTGAGCCATGCTA 57.714 40.909 0.00 0.00 39.88 3.49
6555 10114 4.651778 AGTTTTACTGTGAGCCATGCTAA 58.348 39.130 0.00 0.00 39.88 3.09
6556 10115 5.070001 AGTTTTACTGTGAGCCATGCTAAA 58.930 37.500 0.00 0.00 39.88 1.85
6557 10116 5.711976 AGTTTTACTGTGAGCCATGCTAAAT 59.288 36.000 0.00 0.00 39.88 1.40
6558 10117 6.884295 AGTTTTACTGTGAGCCATGCTAAATA 59.116 34.615 0.00 0.00 39.88 1.40
6559 10118 6.925610 TTTACTGTGAGCCATGCTAAATAG 57.074 37.500 0.00 0.00 39.88 1.73
6560 10119 4.760530 ACTGTGAGCCATGCTAAATAGA 57.239 40.909 0.00 0.00 39.88 1.98
6561 10120 5.301835 ACTGTGAGCCATGCTAAATAGAT 57.698 39.130 0.00 0.00 39.88 1.98
6562 10121 5.688807 ACTGTGAGCCATGCTAAATAGATT 58.311 37.500 0.00 0.00 39.88 2.40
6563 10122 6.830912 ACTGTGAGCCATGCTAAATAGATTA 58.169 36.000 0.00 0.00 39.88 1.75
6564 10123 6.933521 ACTGTGAGCCATGCTAAATAGATTAG 59.066 38.462 0.00 0.00 39.88 1.73
6565 10124 6.233434 TGTGAGCCATGCTAAATAGATTAGG 58.767 40.000 0.00 0.00 39.88 2.69
6566 10125 6.183361 TGTGAGCCATGCTAAATAGATTAGGT 60.183 38.462 0.00 0.00 39.88 3.08
6567 10126 7.016170 TGTGAGCCATGCTAAATAGATTAGGTA 59.984 37.037 0.00 0.00 39.88 3.08
6568 10127 8.043710 GTGAGCCATGCTAAATAGATTAGGTAT 58.956 37.037 0.00 0.00 39.88 2.73
6569 10128 8.605947 TGAGCCATGCTAAATAGATTAGGTATT 58.394 33.333 0.00 0.00 39.88 1.89
6570 10129 9.454859 GAGCCATGCTAAATAGATTAGGTATTT 57.545 33.333 0.00 0.00 39.88 1.40
6571 10130 9.236006 AGCCATGCTAAATAGATTAGGTATTTG 57.764 33.333 0.00 0.00 41.19 2.32
6572 10131 8.462016 GCCATGCTAAATAGATTAGGTATTTGG 58.538 37.037 0.00 0.00 41.19 3.28
6573 10132 9.739276 CCATGCTAAATAGATTAGGTATTTGGA 57.261 33.333 3.85 0.00 41.19 3.53
6590 10149 9.421399 GGTATTTGGATTTGATAATATAGGGGG 57.579 37.037 0.00 0.00 0.00 5.40
6591 10150 7.978099 ATTTGGATTTGATAATATAGGGGGC 57.022 36.000 0.00 0.00 0.00 5.80
6592 10151 5.110814 TGGATTTGATAATATAGGGGGCG 57.889 43.478 0.00 0.00 0.00 6.13
6593 10152 4.080015 TGGATTTGATAATATAGGGGGCGG 60.080 45.833 0.00 0.00 0.00 6.13
6594 10153 4.165372 GGATTTGATAATATAGGGGGCGGA 59.835 45.833 0.00 0.00 0.00 5.54
6595 10154 4.837093 TTTGATAATATAGGGGGCGGAG 57.163 45.455 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.719193 TCTTGATTCAGTCCATGTACAGAAAAA 59.281 33.333 0.33 0.00 30.06 1.94
2 3 7.223584 TCTTGATTCAGTCCATGTACAGAAAA 58.776 34.615 0.33 0.00 30.06 2.29
3 4 6.768483 TCTTGATTCAGTCCATGTACAGAAA 58.232 36.000 0.33 0.00 30.06 2.52
4 5 6.358974 TCTTGATTCAGTCCATGTACAGAA 57.641 37.500 0.33 0.00 30.70 3.02
5 6 6.343703 CATCTTGATTCAGTCCATGTACAGA 58.656 40.000 0.33 0.00 0.00 3.41
6 7 5.007430 GCATCTTGATTCAGTCCATGTACAG 59.993 44.000 0.33 0.00 0.00 2.74
7 8 4.877823 GCATCTTGATTCAGTCCATGTACA 59.122 41.667 0.00 0.00 0.00 2.90
8 9 5.121811 AGCATCTTGATTCAGTCCATGTAC 58.878 41.667 0.00 0.00 0.00 2.90
9 10 5.363101 GAGCATCTTGATTCAGTCCATGTA 58.637 41.667 0.00 0.00 0.00 2.29
10 11 4.197750 GAGCATCTTGATTCAGTCCATGT 58.802 43.478 0.00 0.00 0.00 3.21
11 12 3.564644 GGAGCATCTTGATTCAGTCCATG 59.435 47.826 0.00 0.00 33.73 3.66
12 13 3.743584 CGGAGCATCTTGATTCAGTCCAT 60.744 47.826 0.00 0.00 33.73 3.41
13 14 2.419159 CGGAGCATCTTGATTCAGTCCA 60.419 50.000 0.00 0.00 33.73 4.02
14 15 2.159043 TCGGAGCATCTTGATTCAGTCC 60.159 50.000 0.00 0.00 33.73 3.85
15 16 3.170791 TCGGAGCATCTTGATTCAGTC 57.829 47.619 0.00 0.00 33.73 3.51
16 17 3.616956 TTCGGAGCATCTTGATTCAGT 57.383 42.857 0.00 0.00 33.73 3.41
17 18 4.186926 TCTTTCGGAGCATCTTGATTCAG 58.813 43.478 0.00 0.00 33.73 3.02
18 19 4.206477 TCTTTCGGAGCATCTTGATTCA 57.794 40.909 0.00 0.00 33.73 2.57
19 20 5.551760 TTTCTTTCGGAGCATCTTGATTC 57.448 39.130 0.00 0.00 33.73 2.52
20 21 5.707298 TCTTTTCTTTCGGAGCATCTTGATT 59.293 36.000 0.00 0.00 33.73 2.57
21 22 5.248640 TCTTTTCTTTCGGAGCATCTTGAT 58.751 37.500 0.00 0.00 33.73 2.57
22 23 4.641396 TCTTTTCTTTCGGAGCATCTTGA 58.359 39.130 0.00 0.00 33.73 3.02
23 24 5.362556 TTCTTTTCTTTCGGAGCATCTTG 57.637 39.130 0.00 0.00 33.73 3.02
24 25 6.391227 TTTTCTTTTCTTTCGGAGCATCTT 57.609 33.333 0.00 0.00 33.73 2.40
25 26 6.391227 TTTTTCTTTTCTTTCGGAGCATCT 57.609 33.333 0.00 0.00 33.73 2.90
46 47 1.865340 GTTCGAGCTGGACGAGTTTTT 59.135 47.619 0.00 0.00 40.72 1.94
47 48 1.499049 GTTCGAGCTGGACGAGTTTT 58.501 50.000 0.00 0.00 40.72 2.43
48 49 0.319641 GGTTCGAGCTGGACGAGTTT 60.320 55.000 0.00 0.00 40.72 2.66
49 50 1.179814 AGGTTCGAGCTGGACGAGTT 61.180 55.000 0.00 0.00 40.72 3.01
50 51 1.179814 AAGGTTCGAGCTGGACGAGT 61.180 55.000 0.00 0.00 40.72 4.18
51 52 0.038159 AAAGGTTCGAGCTGGACGAG 60.038 55.000 0.00 0.00 40.72 4.18
52 53 0.391597 AAAAGGTTCGAGCTGGACGA 59.608 50.000 0.00 0.00 37.99 4.20
53 54 0.512952 CAAAAGGTTCGAGCTGGACG 59.487 55.000 0.00 0.00 0.00 4.79
54 55 0.238553 GCAAAAGGTTCGAGCTGGAC 59.761 55.000 0.00 0.00 0.00 4.02
55 56 0.889186 GGCAAAAGGTTCGAGCTGGA 60.889 55.000 0.00 0.00 0.00 3.86
56 57 1.581447 GGCAAAAGGTTCGAGCTGG 59.419 57.895 0.00 0.00 0.00 4.85
57 58 1.172180 TGGGCAAAAGGTTCGAGCTG 61.172 55.000 0.00 0.00 0.00 4.24
58 59 1.150536 TGGGCAAAAGGTTCGAGCT 59.849 52.632 0.00 0.00 0.00 4.09
59 60 1.285950 GTGGGCAAAAGGTTCGAGC 59.714 57.895 0.00 0.00 0.00 5.03
60 61 0.310854 GTGTGGGCAAAAGGTTCGAG 59.689 55.000 0.00 0.00 0.00 4.04
61 62 1.104577 GGTGTGGGCAAAAGGTTCGA 61.105 55.000 0.00 0.00 0.00 3.71
62 63 1.362355 GGTGTGGGCAAAAGGTTCG 59.638 57.895 0.00 0.00 0.00 3.95
63 64 1.745890 GGGTGTGGGCAAAAGGTTC 59.254 57.895 0.00 0.00 0.00 3.62
64 65 1.764454 GGGGTGTGGGCAAAAGGTT 60.764 57.895 0.00 0.00 0.00 3.50
65 66 2.123033 GGGGTGTGGGCAAAAGGT 60.123 61.111 0.00 0.00 0.00 3.50
66 67 1.459348 AAGGGGTGTGGGCAAAAGG 60.459 57.895 0.00 0.00 0.00 3.11
67 68 0.469892 AGAAGGGGTGTGGGCAAAAG 60.470 55.000 0.00 0.00 0.00 2.27
68 69 0.758685 CAGAAGGGGTGTGGGCAAAA 60.759 55.000 0.00 0.00 0.00 2.44
69 70 1.152567 CAGAAGGGGTGTGGGCAAA 60.153 57.895 0.00 0.00 0.00 3.68
70 71 1.943730 AACAGAAGGGGTGTGGGCAA 61.944 55.000 0.00 0.00 0.00 4.52
71 72 2.351924 GAACAGAAGGGGTGTGGGCA 62.352 60.000 0.00 0.00 0.00 5.36
72 73 1.603739 GAACAGAAGGGGTGTGGGC 60.604 63.158 0.00 0.00 0.00 5.36
73 74 1.074951 GGAACAGAAGGGGTGTGGG 59.925 63.158 0.00 0.00 0.00 4.61
74 75 1.302511 CGGAACAGAAGGGGTGTGG 60.303 63.158 0.00 0.00 0.00 4.17
75 76 0.602905 GACGGAACAGAAGGGGTGTG 60.603 60.000 0.00 0.00 0.00 3.82
76 77 0.763223 AGACGGAACAGAAGGGGTGT 60.763 55.000 0.00 0.00 0.00 4.16
77 78 1.067071 GTAGACGGAACAGAAGGGGTG 60.067 57.143 0.00 0.00 0.00 4.61
78 79 1.264295 GTAGACGGAACAGAAGGGGT 58.736 55.000 0.00 0.00 0.00 4.95
79 80 0.535797 GGTAGACGGAACAGAAGGGG 59.464 60.000 0.00 0.00 0.00 4.79
80 81 0.172803 CGGTAGACGGAACAGAAGGG 59.827 60.000 0.00 0.00 39.42 3.95
81 82 3.715854 CGGTAGACGGAACAGAAGG 57.284 57.895 0.00 0.00 39.42 3.46
105 106 2.863988 AAAGGACAGGGGTGGGGG 60.864 66.667 0.00 0.00 0.00 5.40
106 107 2.763902 GAAAGGACAGGGGTGGGG 59.236 66.667 0.00 0.00 0.00 4.96
107 108 2.763902 GGAAAGGACAGGGGTGGG 59.236 66.667 0.00 0.00 0.00 4.61
108 109 2.763902 GGGAAAGGACAGGGGTGG 59.236 66.667 0.00 0.00 0.00 4.61
109 110 2.221299 TCGGGAAAGGACAGGGGTG 61.221 63.158 0.00 0.00 0.00 4.61
110 111 2.206036 TCGGGAAAGGACAGGGGT 59.794 61.111 0.00 0.00 0.00 4.95
111 112 1.900545 GAGTCGGGAAAGGACAGGGG 61.901 65.000 0.00 0.00 36.87 4.79
112 113 1.597461 GAGTCGGGAAAGGACAGGG 59.403 63.158 0.00 0.00 36.87 4.45
113 114 0.905337 AGGAGTCGGGAAAGGACAGG 60.905 60.000 0.00 0.00 36.87 4.00
114 115 0.533032 GAGGAGTCGGGAAAGGACAG 59.467 60.000 0.00 0.00 36.87 3.51
115 116 0.903454 GGAGGAGTCGGGAAAGGACA 60.903 60.000 0.00 0.00 36.87 4.02
116 117 1.615165 GGGAGGAGTCGGGAAAGGAC 61.615 65.000 0.00 0.00 34.62 3.85
117 118 1.305887 GGGAGGAGTCGGGAAAGGA 60.306 63.158 0.00 0.00 0.00 3.36
118 119 2.368011 GGGGAGGAGTCGGGAAAGG 61.368 68.421 0.00 0.00 0.00 3.11
119 120 2.368011 GGGGGAGGAGTCGGGAAAG 61.368 68.421 0.00 0.00 0.00 2.62
120 121 2.285144 GGGGGAGGAGTCGGGAAA 60.285 66.667 0.00 0.00 0.00 3.13
121 122 3.607299 TGGGGGAGGAGTCGGGAA 61.607 66.667 0.00 0.00 0.00 3.97
122 123 4.393778 GTGGGGGAGGAGTCGGGA 62.394 72.222 0.00 0.00 0.00 5.14
126 127 4.348495 TGGGGTGGGGGAGGAGTC 62.348 72.222 0.00 0.00 0.00 3.36
127 128 4.677151 GTGGGGTGGGGGAGGAGT 62.677 72.222 0.00 0.00 0.00 3.85
128 129 4.354943 AGTGGGGTGGGGGAGGAG 62.355 72.222 0.00 0.00 0.00 3.69
129 130 4.348495 GAGTGGGGTGGGGGAGGA 62.348 72.222 0.00 0.00 0.00 3.71
130 131 4.354943 AGAGTGGGGTGGGGGAGG 62.355 72.222 0.00 0.00 0.00 4.30
131 132 2.689034 GAGAGTGGGGTGGGGGAG 60.689 72.222 0.00 0.00 0.00 4.30
132 133 4.348495 GGAGAGTGGGGTGGGGGA 62.348 72.222 0.00 0.00 0.00 4.81
133 134 4.354943 AGGAGAGTGGGGTGGGGG 62.355 72.222 0.00 0.00 0.00 5.40
134 135 2.689034 GAGGAGAGTGGGGTGGGG 60.689 72.222 0.00 0.00 0.00 4.96
135 136 2.689034 GGAGGAGAGTGGGGTGGG 60.689 72.222 0.00 0.00 0.00 4.61
136 137 1.687493 GAGGAGGAGAGTGGGGTGG 60.687 68.421 0.00 0.00 0.00 4.61
137 138 0.686112 GAGAGGAGGAGAGTGGGGTG 60.686 65.000 0.00 0.00 0.00 4.61
138 139 1.700985 GAGAGGAGGAGAGTGGGGT 59.299 63.158 0.00 0.00 0.00 4.95
139 140 1.075600 GGAGAGGAGGAGAGTGGGG 60.076 68.421 0.00 0.00 0.00 4.96
140 141 0.106217 GAGGAGAGGAGGAGAGTGGG 60.106 65.000 0.00 0.00 0.00 4.61
141 142 0.465460 CGAGGAGAGGAGGAGAGTGG 60.465 65.000 0.00 0.00 0.00 4.00
142 143 1.101049 GCGAGGAGAGGAGGAGAGTG 61.101 65.000 0.00 0.00 0.00 3.51
143 144 1.226262 GCGAGGAGAGGAGGAGAGT 59.774 63.158 0.00 0.00 0.00 3.24
144 145 1.528309 GGCGAGGAGAGGAGGAGAG 60.528 68.421 0.00 0.00 0.00 3.20
145 146 1.990160 GAGGCGAGGAGAGGAGGAGA 61.990 65.000 0.00 0.00 0.00 3.71
146 147 1.528309 GAGGCGAGGAGAGGAGGAG 60.528 68.421 0.00 0.00 0.00 3.69
147 148 1.990160 GAGAGGCGAGGAGAGGAGGA 61.990 65.000 0.00 0.00 0.00 3.71
148 149 1.528309 GAGAGGCGAGGAGAGGAGG 60.528 68.421 0.00 0.00 0.00 4.30
149 150 1.528309 GGAGAGGCGAGGAGAGGAG 60.528 68.421 0.00 0.00 0.00 3.69
150 151 2.598467 GGAGAGGCGAGGAGAGGA 59.402 66.667 0.00 0.00 0.00 3.71
151 152 2.520741 GGGAGAGGCGAGGAGAGG 60.521 72.222 0.00 0.00 0.00 3.69
152 153 2.520741 GGGGAGAGGCGAGGAGAG 60.521 72.222 0.00 0.00 0.00 3.20
153 154 2.243774 AATGGGGAGAGGCGAGGAGA 62.244 60.000 0.00 0.00 0.00 3.71
154 155 1.764054 AATGGGGAGAGGCGAGGAG 60.764 63.158 0.00 0.00 0.00 3.69
155 156 2.066393 CAATGGGGAGAGGCGAGGA 61.066 63.158 0.00 0.00 0.00 3.71
156 157 2.507944 CAATGGGGAGAGGCGAGG 59.492 66.667 0.00 0.00 0.00 4.63
157 158 2.066393 TCCAATGGGGAGAGGCGAG 61.066 63.158 0.00 0.00 42.15 5.03
158 159 2.040442 TCCAATGGGGAGAGGCGA 59.960 61.111 0.00 0.00 42.15 5.54
165 166 2.683465 GGCTCTGCTCCAATGGGGA 61.683 63.158 1.77 0.00 45.89 4.81
166 167 2.123982 GGCTCTGCTCCAATGGGG 60.124 66.667 0.00 0.00 38.37 4.96
167 168 1.751927 GTGGCTCTGCTCCAATGGG 60.752 63.158 0.00 0.00 35.01 4.00
168 169 0.609957 TTGTGGCTCTGCTCCAATGG 60.610 55.000 0.00 0.00 35.01 3.16
169 170 0.809385 CTTGTGGCTCTGCTCCAATG 59.191 55.000 0.00 0.00 35.01 2.82
170 171 0.964358 GCTTGTGGCTCTGCTCCAAT 60.964 55.000 0.00 0.00 35.01 3.16
171 172 1.601759 GCTTGTGGCTCTGCTCCAA 60.602 57.895 0.00 0.00 35.01 3.53
172 173 2.033141 GCTTGTGGCTCTGCTCCA 59.967 61.111 0.00 0.00 38.06 3.86
173 174 2.749441 GGCTTGTGGCTCTGCTCC 60.749 66.667 5.47 0.00 41.46 4.70
174 175 0.107508 TATGGCTTGTGGCTCTGCTC 60.108 55.000 5.47 0.00 41.46 4.26
175 176 0.107312 CTATGGCTTGTGGCTCTGCT 60.107 55.000 5.47 0.00 41.46 4.24
176 177 1.722636 GCTATGGCTTGTGGCTCTGC 61.723 60.000 0.00 0.00 41.46 4.26
177 178 1.099879 GGCTATGGCTTGTGGCTCTG 61.100 60.000 0.00 0.00 41.46 3.35
178 179 1.225704 GGCTATGGCTTGTGGCTCT 59.774 57.895 0.00 0.00 41.46 4.09
179 180 1.825622 GGGCTATGGCTTGTGGCTC 60.826 63.158 0.00 0.00 41.46 4.70
180 181 2.276740 GGGCTATGGCTTGTGGCT 59.723 61.111 0.00 0.00 41.46 4.75
181 182 1.994885 TAGGGGCTATGGCTTGTGGC 61.995 60.000 0.00 0.00 38.73 5.01
182 183 0.109342 CTAGGGGCTATGGCTTGTGG 59.891 60.000 0.00 0.00 38.73 4.17
183 184 0.109342 CCTAGGGGCTATGGCTTGTG 59.891 60.000 0.00 0.00 38.73 3.33
184 185 2.544768 CCTAGGGGCTATGGCTTGT 58.455 57.895 0.00 0.00 38.73 3.16
204 205 4.933064 GATGGCTCGAGGCGACGG 62.933 72.222 30.84 0.00 44.42 4.79
346 347 0.743345 CGAATTGACTCCCCGGGAAC 60.743 60.000 26.32 10.66 0.00 3.62
347 348 1.600107 CGAATTGACTCCCCGGGAA 59.400 57.895 26.32 8.33 0.00 3.97
352 353 4.542075 GGAGCGAATTGACTCCCC 57.458 61.111 10.95 0.00 45.71 4.81
363 364 2.221906 GAAGGCGTGTTAGGGAGCGA 62.222 60.000 0.00 0.00 0.00 4.93
371 372 2.235016 AGGCAAATTGAAGGCGTGTTA 58.765 42.857 0.00 0.00 35.18 2.41
380 381 6.536582 TCAATCGAAAAACAAGGCAAATTGAA 59.463 30.769 0.00 0.00 34.20 2.69
384 385 7.226325 TCAATTCAATCGAAAAACAAGGCAAAT 59.774 29.630 0.00 0.00 34.01 2.32
389 390 8.763356 TGATTTCAATTCAATCGAAAAACAAGG 58.237 29.630 0.00 0.00 33.91 3.61
390 391 9.787626 CTGATTTCAATTCAATCGAAAAACAAG 57.212 29.630 0.00 0.00 33.91 3.16
406 408 5.536161 AGGGCGCATAATAACTGATTTCAAT 59.464 36.000 10.83 0.00 0.00 2.57
408 410 4.460263 AGGGCGCATAATAACTGATTTCA 58.540 39.130 10.83 0.00 0.00 2.69
409 411 4.083271 GGAGGGCGCATAATAACTGATTTC 60.083 45.833 10.83 0.00 0.00 2.17
412 414 2.612972 CGGAGGGCGCATAATAACTGAT 60.613 50.000 10.83 0.00 0.00 2.90
413 415 1.270094 CGGAGGGCGCATAATAACTGA 60.270 52.381 10.83 0.00 0.00 3.41
414 416 1.148310 CGGAGGGCGCATAATAACTG 58.852 55.000 10.83 0.00 0.00 3.16
415 417 0.756903 ACGGAGGGCGCATAATAACT 59.243 50.000 10.83 0.00 0.00 2.24
416 418 0.865769 CACGGAGGGCGCATAATAAC 59.134 55.000 10.83 0.00 0.00 1.89
417 419 0.882927 GCACGGAGGGCGCATAATAA 60.883 55.000 10.83 0.00 0.00 1.40
418 420 1.301401 GCACGGAGGGCGCATAATA 60.301 57.895 10.83 0.00 0.00 0.98
433 435 0.524862 TCCGACTCCGTTTCTAGCAC 59.475 55.000 0.00 0.00 0.00 4.40
490 494 5.033522 GAGAGGCAGTAAATATAGGGGGAT 58.966 45.833 0.00 0.00 0.00 3.85
491 495 4.426704 GAGAGGCAGTAAATATAGGGGGA 58.573 47.826 0.00 0.00 0.00 4.81
492 496 3.519913 GGAGAGGCAGTAAATATAGGGGG 59.480 52.174 0.00 0.00 0.00 5.40
493 497 3.519913 GGGAGAGGCAGTAAATATAGGGG 59.480 52.174 0.00 0.00 0.00 4.79
494 498 3.519913 GGGGAGAGGCAGTAAATATAGGG 59.480 52.174 0.00 0.00 0.00 3.53
505 509 3.086600 GGTGAGGGGGAGAGGCAG 61.087 72.222 0.00 0.00 0.00 4.85
512 516 4.715130 CGGGTCAGGTGAGGGGGA 62.715 72.222 0.00 0.00 0.00 4.81
529 533 2.068277 GATTGGATTGGAGGCTGCGC 62.068 60.000 0.00 0.00 0.00 6.09
639 643 2.490217 CCGAACAGAGACGGCGAT 59.510 61.111 16.62 0.11 42.55 4.58
708 712 2.516460 AGCGGCGGATCTAGACGT 60.516 61.111 9.78 0.00 43.06 4.34
781 785 0.596577 CGACTCCTTGTCTTCACCGA 59.403 55.000 0.00 0.00 43.25 4.69
819 823 1.138247 CTACACGTCGCACTACCCC 59.862 63.158 0.00 0.00 0.00 4.95
854 858 9.899661 ACCAAAAATGTATATTACAGCAGTAGA 57.100 29.630 0.00 0.00 42.77 2.59
871 875 9.180678 GTAGAGTTCAATACAACACCAAAAATG 57.819 33.333 0.00 0.00 0.00 2.32
978 983 7.015584 ACCATCAAGGCTCCCAAATTATTATTC 59.984 37.037 0.00 0.00 43.14 1.75
1015 1020 1.207329 GGAGACGCCAAGATAACCAGT 59.793 52.381 0.00 0.00 36.34 4.00
1074 1211 3.226429 GACCTCGGCTGTCTGCACA 62.226 63.158 3.96 0.00 45.15 4.57
1077 1214 2.765250 TTTCGACCTCGGCTGTCTGC 62.765 60.000 0.00 0.00 40.29 4.26
1135 1292 6.760770 AGAGCAACGGAAAATTCAAAAATTCA 59.239 30.769 0.00 0.00 33.93 2.57
1209 1368 2.753043 AAGCCCGCATCAGCAAGG 60.753 61.111 0.00 0.00 42.27 3.61
1340 1499 7.973944 GGACAAACAACAAGTCATCTTAAAACT 59.026 33.333 0.00 0.00 34.04 2.66
1619 1885 4.340666 CACCAGACTCTGCACAGATATACT 59.659 45.833 0.00 0.00 36.76 2.12
1620 1886 4.500545 CCACCAGACTCTGCACAGATATAC 60.501 50.000 0.00 0.00 36.76 1.47
1703 1969 9.520515 AGAATCACAACAGTAAATTTAGGTGAT 57.479 29.630 16.00 16.00 44.11 3.06
1805 2104 3.250744 TCCTCTTACATTTCGAGTTGCG 58.749 45.455 0.00 0.00 42.69 4.85
2247 2558 9.411189 TCAGGAATTCATATCAAACATCATCAA 57.589 29.630 7.93 0.00 0.00 2.57
2466 2782 8.652810 AAACTCTGGATTTGAGAAAACAAATG 57.347 30.769 10.62 0.81 46.18 2.32
2555 2871 2.077413 ACTCTTGCAGCGAGAAGAAG 57.923 50.000 13.69 4.60 32.87 2.85
2613 2929 2.156098 TCCACATGTAAAGTTTCCGGC 58.844 47.619 0.00 0.00 0.00 6.13
2630 4213 3.038280 TCTCTTGTTCTGTTGGTCTCCA 58.962 45.455 0.00 0.00 0.00 3.86
2635 4218 6.348540 GCGAAATATTCTCTTGTTCTGTTGGT 60.349 38.462 0.00 0.00 0.00 3.67
2780 4372 4.082949 GCACAGTTGACCCCTAAACAATAC 60.083 45.833 0.00 0.00 0.00 1.89
2802 4394 5.451520 CCCATACTACCACAGTACTAGTTGC 60.452 48.000 0.00 0.00 42.56 4.17
2806 4398 5.298777 GTGTCCCATACTACCACAGTACTAG 59.701 48.000 0.00 0.00 42.56 2.57
2864 4456 8.076178 TGAACAGCTTAAGAAAATGCTAACTTC 58.924 33.333 6.67 0.00 34.10 3.01
2953 4618 2.766828 AGGGTGCTAAGTATCTCCACAC 59.233 50.000 0.00 0.00 0.00 3.82
3071 4736 5.397360 ACCTGGACATGGAAGAAAAATCTT 58.603 37.500 0.00 0.00 0.00 2.40
3560 5226 6.710744 TGTTTTCTGAGGATAAAGTTCAGACC 59.289 38.462 3.12 0.00 44.97 3.85
3680 5470 5.233988 AGTTAACAGCAAAAACACAAGCAA 58.766 33.333 8.61 0.00 0.00 3.91
3773 5603 8.719648 GGAAATCAAGTCTGATGCAAGATATAG 58.280 37.037 0.00 0.00 41.66 1.31
4031 5861 7.115663 GCCAAAATCACATATTAAAACACACGT 59.884 33.333 0.00 0.00 0.00 4.49
4269 6104 5.532779 GGACACTTCAATATCCATTCCTTCC 59.467 44.000 0.00 0.00 0.00 3.46
4625 7619 2.030893 ACATCCAACACAGCAATGTTCG 60.031 45.455 2.82 0.00 40.89 3.95
4725 7827 2.093764 CCTCTCAGCTTCCCTGTGTAAG 60.094 54.545 0.00 0.00 42.38 2.34
4815 7917 2.890808 TATCGTCAGGCTTAGCTTGG 57.109 50.000 16.11 1.55 36.29 3.61
4858 7960 4.043310 TCCAGAACATCCTTCCAAAGATGT 59.957 41.667 0.00 0.00 39.63 3.06
5005 8111 8.970859 AAAGCATTAAGAGCTAATGAGTATGT 57.029 30.769 11.14 0.00 46.88 2.29
5035 8141 3.194329 TCACACCATGCACTTAGAGAGAG 59.806 47.826 0.00 0.00 0.00 3.20
5036 8142 3.165071 TCACACCATGCACTTAGAGAGA 58.835 45.455 0.00 0.00 0.00 3.10
5037 8143 3.599730 TCACACCATGCACTTAGAGAG 57.400 47.619 0.00 0.00 0.00 3.20
5431 8549 0.952497 AGACACGCACATTGGCAGAG 60.952 55.000 0.00 0.00 0.00 3.35
5432 8550 0.950555 GAGACACGCACATTGGCAGA 60.951 55.000 0.00 0.00 0.00 4.26
5590 8712 4.652175 GCTTCATTTAGCTTGTTTTGGC 57.348 40.909 0.00 0.00 38.15 4.52
5603 8725 2.755103 GTTGGATTCGGGAGCTTCATTT 59.245 45.455 0.00 0.00 0.00 2.32
5615 8737 0.893270 TTGGCCTGGTGTTGGATTCG 60.893 55.000 3.32 0.00 0.00 3.34
5651 8773 2.103094 CGCTGGAATTGTCCTATCCTCA 59.897 50.000 0.00 0.00 45.22 3.86
5706 8828 4.705023 GGCCTACAGTGGATGTTTACATTT 59.295 41.667 0.00 0.00 39.96 2.32
5747 8869 1.332375 TGTACTTTTTCCGCAGCACAC 59.668 47.619 0.00 0.00 0.00 3.82
5750 8872 2.548057 CTCTTGTACTTTTTCCGCAGCA 59.452 45.455 0.00 0.00 0.00 4.41
5751 8873 2.806244 TCTCTTGTACTTTTTCCGCAGC 59.194 45.455 0.00 0.00 0.00 5.25
5752 8874 5.418310 TTTCTCTTGTACTTTTTCCGCAG 57.582 39.130 0.00 0.00 0.00 5.18
5753 8875 5.821516 TTTTCTCTTGTACTTTTTCCGCA 57.178 34.783 0.00 0.00 0.00 5.69
5755 8877 7.700656 ACAACATTTTCTCTTGTACTTTTTCCG 59.299 33.333 0.00 0.00 0.00 4.30
5756 8878 8.926715 ACAACATTTTCTCTTGTACTTTTTCC 57.073 30.769 0.00 0.00 0.00 3.13
5831 8953 3.830755 ACAAGCCAAGCAAAGATGAGAAT 59.169 39.130 0.00 0.00 0.00 2.40
5912 9038 5.240623 ACTTCGTTCAATTTATGCACAAGGA 59.759 36.000 0.00 0.00 0.00 3.36
5936 9062 1.674817 GCTAACCAGCCGCTCAAGTTA 60.675 52.381 0.00 0.00 42.37 2.24
5959 9091 6.642950 TGCAATTTAAAACCTTGATAACCACG 59.357 34.615 4.56 0.00 0.00 4.94
6034 9167 5.338614 ACGCAATTGTAAATAGTATCCGC 57.661 39.130 7.40 0.00 0.00 5.54
6141 9274 7.667557 TCTTGCGGAGTTTAGTTATGCTATAT 58.332 34.615 0.00 0.00 0.00 0.86
6142 9275 7.046292 TCTTGCGGAGTTTAGTTATGCTATA 57.954 36.000 0.00 0.00 0.00 1.31
6155 9288 1.002544 CTCTTTCCCTCTTGCGGAGTT 59.997 52.381 5.91 0.00 40.30 3.01
6157 9290 0.742635 GCTCTTTCCCTCTTGCGGAG 60.743 60.000 0.20 0.20 41.51 4.63
6194 9327 2.975410 CATGTGTTCATGCGACACTT 57.025 45.000 23.61 17.91 45.79 3.16
6204 9355 3.064682 CGTTTGGAGTTGTCATGTGTTCA 59.935 43.478 0.00 0.00 0.00 3.18
6236 9387 4.092821 CCATCTTCGCGTCACTAAATTTGA 59.907 41.667 5.77 0.00 0.00 2.69
6240 9420 1.933853 GCCATCTTCGCGTCACTAAAT 59.066 47.619 5.77 0.00 0.00 1.40
6250 9430 3.831715 AACTAAAGTTGCCATCTTCGC 57.168 42.857 0.00 0.00 36.80 4.70
6273 9453 9.390795 CATCAGAAAAGAAGTTGTCATACTTTG 57.609 33.333 0.00 0.00 38.43 2.77
6274 9454 8.571336 CCATCAGAAAAGAAGTTGTCATACTTT 58.429 33.333 0.00 0.00 38.43 2.66
6278 9781 6.003326 TGCCATCAGAAAAGAAGTTGTCATA 58.997 36.000 0.00 0.00 0.00 2.15
6290 9793 8.785329 AAAAACTAAAACTTGCCATCAGAAAA 57.215 26.923 0.00 0.00 0.00 2.29
6315 9818 7.992008 ACTAAAGTTGTCATCCGAAAAGAAAA 58.008 30.769 0.00 0.00 0.00 2.29
6317 9820 7.562454 AACTAAAGTTGTCATCCGAAAAGAA 57.438 32.000 0.00 0.00 36.80 2.52
6351 9858 2.828933 GAAGCACTTCGGTCCTGAC 58.171 57.895 0.00 0.00 0.00 3.51
6374 9881 5.324409 ACCCAAATGATAAGTGTCACATGT 58.676 37.500 5.62 0.00 0.00 3.21
6375 9882 5.902613 ACCCAAATGATAAGTGTCACATG 57.097 39.130 5.62 0.00 0.00 3.21
6376 9883 8.469200 CATTAACCCAAATGATAAGTGTCACAT 58.531 33.333 5.62 0.00 38.84 3.21
6377 9884 7.667635 TCATTAACCCAAATGATAAGTGTCACA 59.332 33.333 5.62 0.00 40.17 3.58
6378 9885 8.050778 TCATTAACCCAAATGATAAGTGTCAC 57.949 34.615 0.00 0.00 40.17 3.67
6395 9905 7.282450 CCCTAGTAGGTGAACAATTCATTAACC 59.718 40.741 15.26 0.00 42.47 2.85
6402 9912 6.371825 CAGAAACCCTAGTAGGTGAACAATTC 59.628 42.308 15.26 8.12 40.05 2.17
6499 10058 5.964958 AATGTACATGTGCAAAAGTAGCT 57.035 34.783 20.75 0.00 0.00 3.32
6527 10086 8.210946 AGCATGGCTCACAGTAAAACTATTATA 58.789 33.333 0.00 0.00 30.62 0.98
6535 10094 7.109501 TCTATTTAGCATGGCTCACAGTAAAA 58.890 34.615 0.00 0.00 40.44 1.52
6540 10099 6.370994 CCTAATCTATTTAGCATGGCTCACAG 59.629 42.308 0.00 0.00 40.44 3.66
6541 10100 6.183361 ACCTAATCTATTTAGCATGGCTCACA 60.183 38.462 0.00 0.00 40.44 3.58
6542 10101 6.234177 ACCTAATCTATTTAGCATGGCTCAC 58.766 40.000 0.00 0.00 40.44 3.51
6543 10102 6.439636 ACCTAATCTATTTAGCATGGCTCA 57.560 37.500 0.00 0.00 40.44 4.26
6544 10103 9.454859 AAATACCTAATCTATTTAGCATGGCTC 57.545 33.333 0.00 0.00 40.44 4.70
6545 10104 9.236006 CAAATACCTAATCTATTTAGCATGGCT 57.764 33.333 0.00 0.00 43.41 4.75
6546 10105 8.462016 CCAAATACCTAATCTATTTAGCATGGC 58.538 37.037 0.00 0.00 36.71 4.40
6547 10106 9.739276 TCCAAATACCTAATCTATTTAGCATGG 57.261 33.333 0.00 0.00 36.71 3.66
6564 10123 9.421399 CCCCCTATATTATCAAATCCAAATACC 57.579 37.037 0.00 0.00 0.00 2.73
6565 10124 8.914011 GCCCCCTATATTATCAAATCCAAATAC 58.086 37.037 0.00 0.00 0.00 1.89
6566 10125 7.777910 CGCCCCCTATATTATCAAATCCAAATA 59.222 37.037 0.00 0.00 0.00 1.40
6567 10126 6.607198 CGCCCCCTATATTATCAAATCCAAAT 59.393 38.462 0.00 0.00 0.00 2.32
6568 10127 5.949354 CGCCCCCTATATTATCAAATCCAAA 59.051 40.000 0.00 0.00 0.00 3.28
6569 10128 5.505780 CGCCCCCTATATTATCAAATCCAA 58.494 41.667 0.00 0.00 0.00 3.53
6570 10129 4.080015 CCGCCCCCTATATTATCAAATCCA 60.080 45.833 0.00 0.00 0.00 3.41
6571 10130 4.165372 TCCGCCCCCTATATTATCAAATCC 59.835 45.833 0.00 0.00 0.00 3.01
6572 10131 5.367945 TCCGCCCCCTATATTATCAAATC 57.632 43.478 0.00 0.00 0.00 2.17
6573 10132 4.385310 GCTCCGCCCCCTATATTATCAAAT 60.385 45.833 0.00 0.00 0.00 2.32
6574 10133 3.054655 GCTCCGCCCCCTATATTATCAAA 60.055 47.826 0.00 0.00 0.00 2.69
6575 10134 2.504175 GCTCCGCCCCCTATATTATCAA 59.496 50.000 0.00 0.00 0.00 2.57
6576 10135 2.116238 GCTCCGCCCCCTATATTATCA 58.884 52.381 0.00 0.00 0.00 2.15
6577 10136 2.399580 AGCTCCGCCCCCTATATTATC 58.600 52.381 0.00 0.00 0.00 1.75
6578 10137 2.570386 AGCTCCGCCCCCTATATTAT 57.430 50.000 0.00 0.00 0.00 1.28
6579 10138 2.337359 AAGCTCCGCCCCCTATATTA 57.663 50.000 0.00 0.00 0.00 0.98
6580 10139 2.188817 CTAAGCTCCGCCCCCTATATT 58.811 52.381 0.00 0.00 0.00 1.28
6581 10140 1.361543 TCTAAGCTCCGCCCCCTATAT 59.638 52.381 0.00 0.00 0.00 0.86
6582 10141 0.781920 TCTAAGCTCCGCCCCCTATA 59.218 55.000 0.00 0.00 0.00 1.31
6583 10142 0.832559 GTCTAAGCTCCGCCCCCTAT 60.833 60.000 0.00 0.00 0.00 2.57
6584 10143 1.457079 GTCTAAGCTCCGCCCCCTA 60.457 63.158 0.00 0.00 0.00 3.53
6585 10144 2.764547 GTCTAAGCTCCGCCCCCT 60.765 66.667 0.00 0.00 0.00 4.79
6586 10145 1.984288 AATGTCTAAGCTCCGCCCCC 61.984 60.000 0.00 0.00 0.00 5.40
6587 10146 0.815615 CAATGTCTAAGCTCCGCCCC 60.816 60.000 0.00 0.00 0.00 5.80
6588 10147 0.815615 CCAATGTCTAAGCTCCGCCC 60.816 60.000 0.00 0.00 0.00 6.13
6589 10148 0.107654 ACCAATGTCTAAGCTCCGCC 60.108 55.000 0.00 0.00 0.00 6.13
6590 10149 3.460648 ACCAATGTCTAAGCTCCGC 57.539 52.632 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.