Multiple sequence alignment - TraesCS4D01G066400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G066400 chr4D 100.000 2949 0 0 1 2949 41073338 41076286 0.000000e+00 5446.0
1 TraesCS4D01G066400 chr4B 91.421 2273 110 31 120 2348 60175808 60178039 0.000000e+00 3038.0
2 TraesCS4D01G066400 chr4A 92.265 1823 78 26 606 2381 558548475 558546669 0.000000e+00 2527.0
3 TraesCS4D01G066400 chr4A 83.929 224 8 6 290 490 558549171 558548953 3.880000e-44 189.0
4 TraesCS4D01G066400 chr4A 89.333 150 14 1 132 281 558550975 558550828 1.400000e-43 187.0
5 TraesCS4D01G066400 chr2A 80.952 462 54 23 2509 2948 412458873 412459322 4.710000e-88 335.0
6 TraesCS4D01G066400 chr3D 77.800 509 70 19 2473 2948 570144058 570143560 1.040000e-69 274.0
7 TraesCS4D01G066400 chr3D 74.848 493 64 36 2469 2948 560945377 560944932 5.050000e-38 169.0
8 TraesCS4D01G066400 chr1D 82.213 253 29 8 2705 2949 362513796 362513552 1.390000e-48 204.0
9 TraesCS4D01G066400 chr1D 77.011 261 46 5 2693 2946 15617320 15617067 1.430000e-28 137.0
10 TraesCS4D01G066400 chr2B 75.198 504 65 33 2471 2949 165110618 165110150 1.810000e-42 183.0
11 TraesCS4D01G066400 chrUn 75.352 426 71 27 2532 2946 40899637 40899235 1.090000e-39 174.0
12 TraesCS4D01G066400 chrUn 75.352 426 71 27 2532 2946 333713224 333713626 1.090000e-39 174.0
13 TraesCS4D01G066400 chr7B 88.889 81 9 0 2868 2948 124256114 124256194 1.870000e-17 100.0
14 TraesCS4D01G066400 chr7B 76.923 195 30 9 2759 2945 382611442 382611629 2.420000e-16 97.1
15 TraesCS4D01G066400 chr1A 89.744 78 7 1 2872 2949 41832394 41832470 6.730000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G066400 chr4D 41073338 41076286 2948 False 5446.000000 5446 100.000 1 2949 1 chr4D.!!$F1 2948
1 TraesCS4D01G066400 chr4B 60175808 60178039 2231 False 3038.000000 3038 91.421 120 2348 1 chr4B.!!$F1 2228
2 TraesCS4D01G066400 chr4A 558546669 558550975 4306 True 967.666667 2527 88.509 132 2381 3 chr4A.!!$R1 2249

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
87 88 0.040246 GGCGACACGATACTAGCCTC 60.04 60.0 0.0 0.0 41.21 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2050 4156 1.021968 GCACCGAACCAAGAACAAGT 58.978 50.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.549793 TTGCAAGCGGTCTGTTGA 57.450 50.000 0.00 0.00 0.00 3.18
18 19 2.787191 TTGCAAGCGGTCTGTTGAA 58.213 47.368 0.00 0.00 0.00 2.69
19 20 0.662619 TTGCAAGCGGTCTGTTGAAG 59.337 50.000 0.00 0.00 0.00 3.02
20 21 0.179059 TGCAAGCGGTCTGTTGAAGA 60.179 50.000 0.00 0.00 0.00 2.87
21 22 1.160137 GCAAGCGGTCTGTTGAAGAT 58.840 50.000 0.00 0.00 37.23 2.40
22 23 1.537202 GCAAGCGGTCTGTTGAAGATT 59.463 47.619 0.00 0.00 37.23 2.40
23 24 2.742053 GCAAGCGGTCTGTTGAAGATTA 59.258 45.455 0.00 0.00 37.23 1.75
24 25 3.188460 GCAAGCGGTCTGTTGAAGATTAA 59.812 43.478 0.00 0.00 37.23 1.40
25 26 4.320202 GCAAGCGGTCTGTTGAAGATTAAA 60.320 41.667 0.00 0.00 37.23 1.52
26 27 5.757886 CAAGCGGTCTGTTGAAGATTAAAA 58.242 37.500 0.00 0.00 37.23 1.52
27 28 6.205784 CAAGCGGTCTGTTGAAGATTAAAAA 58.794 36.000 0.00 0.00 37.23 1.94
28 29 6.575162 AGCGGTCTGTTGAAGATTAAAAAT 57.425 33.333 0.00 0.00 37.23 1.82
29 30 6.981722 AGCGGTCTGTTGAAGATTAAAAATT 58.018 32.000 0.00 0.00 37.23 1.82
30 31 6.863126 AGCGGTCTGTTGAAGATTAAAAATTG 59.137 34.615 0.00 0.00 37.23 2.32
31 32 6.640907 GCGGTCTGTTGAAGATTAAAAATTGT 59.359 34.615 0.00 0.00 37.23 2.71
32 33 7.169140 GCGGTCTGTTGAAGATTAAAAATTGTT 59.831 33.333 0.00 0.00 37.23 2.83
33 34 9.030301 CGGTCTGTTGAAGATTAAAAATTGTTT 57.970 29.630 0.00 0.00 37.23 2.83
36 37 9.541143 TCTGTTGAAGATTAAAAATTGTTTCCC 57.459 29.630 0.00 0.00 0.00 3.97
37 38 8.359060 TGTTGAAGATTAAAAATTGTTTCCCG 57.641 30.769 0.00 0.00 0.00 5.14
38 39 7.042389 TGTTGAAGATTAAAAATTGTTTCCCGC 60.042 33.333 0.00 0.00 0.00 6.13
39 40 6.516718 TGAAGATTAAAAATTGTTTCCCGCA 58.483 32.000 0.00 0.00 0.00 5.69
40 41 6.986817 TGAAGATTAAAAATTGTTTCCCGCAA 59.013 30.769 0.00 0.00 0.00 4.85
41 42 7.495934 TGAAGATTAAAAATTGTTTCCCGCAAA 59.504 29.630 0.00 0.00 0.00 3.68
42 43 7.793927 AGATTAAAAATTGTTTCCCGCAAAA 57.206 28.000 0.00 0.00 0.00 2.44
43 44 8.214721 AGATTAAAAATTGTTTCCCGCAAAAA 57.785 26.923 0.00 0.00 0.00 1.94
68 69 8.702163 AAAGGAAGATTAAAAATTGCATACGG 57.298 30.769 0.00 0.00 0.00 4.02
69 70 6.805713 AGGAAGATTAAAAATTGCATACGGG 58.194 36.000 0.00 0.00 0.00 5.28
70 71 5.462068 GGAAGATTAAAAATTGCATACGGGC 59.538 40.000 0.00 0.00 0.00 6.13
71 72 4.606961 AGATTAAAAATTGCATACGGGCG 58.393 39.130 0.00 0.00 36.28 6.13
72 73 4.336993 AGATTAAAAATTGCATACGGGCGA 59.663 37.500 0.00 0.00 36.28 5.54
73 74 2.271821 AAAAATTGCATACGGGCGAC 57.728 45.000 0.00 0.00 36.28 5.19
74 75 1.169577 AAAATTGCATACGGGCGACA 58.830 45.000 0.00 0.00 36.28 4.35
75 76 0.450184 AAATTGCATACGGGCGACAC 59.550 50.000 0.00 0.00 36.28 3.67
76 77 1.701545 AATTGCATACGGGCGACACG 61.702 55.000 0.00 0.00 36.28 4.49
77 78 2.566057 ATTGCATACGGGCGACACGA 62.566 55.000 8.45 0.00 36.28 4.35
78 79 2.279252 GCATACGGGCGACACGAT 60.279 61.111 8.45 0.00 34.93 3.73
79 80 1.008194 GCATACGGGCGACACGATA 60.008 57.895 8.45 0.00 34.93 2.92
80 81 1.273455 GCATACGGGCGACACGATAC 61.273 60.000 8.45 0.00 34.93 2.24
81 82 0.309922 CATACGGGCGACACGATACT 59.690 55.000 8.45 0.00 34.93 2.12
82 83 1.532437 CATACGGGCGACACGATACTA 59.468 52.381 8.45 0.00 34.93 1.82
83 84 1.220529 TACGGGCGACACGATACTAG 58.779 55.000 8.45 0.00 34.93 2.57
84 85 1.370172 CGGGCGACACGATACTAGC 60.370 63.158 0.00 0.00 0.00 3.42
85 86 1.007618 GGGCGACACGATACTAGCC 60.008 63.158 0.00 0.00 43.47 3.93
86 87 1.453762 GGGCGACACGATACTAGCCT 61.454 60.000 4.24 0.00 43.68 4.58
87 88 0.040246 GGCGACACGATACTAGCCTC 60.040 60.000 0.00 0.00 41.21 4.70
88 89 0.040246 GCGACACGATACTAGCCTCC 60.040 60.000 0.00 0.00 0.00 4.30
89 90 0.235144 CGACACGATACTAGCCTCCG 59.765 60.000 0.00 0.00 0.00 4.63
90 91 0.040246 GACACGATACTAGCCTCCGC 60.040 60.000 0.00 0.00 0.00 5.54
91 92 1.082038 CACGATACTAGCCTCCGCG 60.082 63.158 0.00 0.00 41.18 6.46
92 93 1.525535 ACGATACTAGCCTCCGCGT 60.526 57.895 4.92 0.00 41.18 6.01
93 94 1.099879 ACGATACTAGCCTCCGCGTT 61.100 55.000 4.92 0.00 41.18 4.84
94 95 0.660595 CGATACTAGCCTCCGCGTTG 60.661 60.000 4.92 0.00 41.18 4.10
95 96 0.940047 GATACTAGCCTCCGCGTTGC 60.940 60.000 4.92 4.28 41.18 4.17
108 109 2.145053 GCGTTGCGTTTAGATCACTG 57.855 50.000 0.00 0.00 0.00 3.66
109 110 1.786928 GCGTTGCGTTTAGATCACTGC 60.787 52.381 0.00 0.00 0.00 4.40
110 111 1.726791 CGTTGCGTTTAGATCACTGCT 59.273 47.619 0.00 0.00 0.00 4.24
111 112 2.921121 CGTTGCGTTTAGATCACTGCTA 59.079 45.455 0.00 0.00 0.00 3.49
112 113 3.241678 CGTTGCGTTTAGATCACTGCTAC 60.242 47.826 0.00 0.00 0.00 3.58
113 114 3.586100 TGCGTTTAGATCACTGCTACA 57.414 42.857 0.00 0.00 0.00 2.74
114 115 3.511699 TGCGTTTAGATCACTGCTACAG 58.488 45.455 0.00 0.00 37.52 2.74
115 116 3.192633 TGCGTTTAGATCACTGCTACAGA 59.807 43.478 0.78 0.00 35.18 3.41
116 117 3.794028 GCGTTTAGATCACTGCTACAGAG 59.206 47.826 0.78 0.00 35.18 3.35
117 118 4.355437 CGTTTAGATCACTGCTACAGAGG 58.645 47.826 0.78 0.00 35.18 3.69
118 119 4.688021 GTTTAGATCACTGCTACAGAGGG 58.312 47.826 0.78 0.00 35.18 4.30
124 125 3.982516 TCACTGCTACAGAGGGAGTAAT 58.017 45.455 0.78 0.00 33.76 1.89
127 128 5.360144 TCACTGCTACAGAGGGAGTAATAAC 59.640 44.000 0.78 0.00 33.76 1.89
130 131 4.097437 TGCTACAGAGGGAGTAATAACGTG 59.903 45.833 0.00 0.00 0.00 4.49
167 169 1.154413 CGATTCAACGTGGTGCAGC 60.154 57.895 9.47 9.47 0.00 5.25
175 177 2.991540 GTGGTGCAGCCCCCTTTC 60.992 66.667 14.36 0.00 36.04 2.62
231 236 3.130340 TCTTTGGCAGAAGTTTGTTGGAC 59.870 43.478 8.55 0.00 0.00 4.02
234 239 1.963515 GGCAGAAGTTTGTTGGACCAT 59.036 47.619 0.00 0.00 0.00 3.55
235 240 2.029918 GGCAGAAGTTTGTTGGACCATC 60.030 50.000 0.00 0.00 0.00 3.51
236 241 2.622942 GCAGAAGTTTGTTGGACCATCA 59.377 45.455 0.82 0.82 0.00 3.07
237 242 3.550842 GCAGAAGTTTGTTGGACCATCAC 60.551 47.826 4.66 0.00 0.00 3.06
238 243 2.878406 AGAAGTTTGTTGGACCATCACG 59.122 45.455 4.66 0.00 0.00 4.35
268 273 3.279434 ACAAGTGCTTCCTCGAACTTTT 58.721 40.909 0.00 0.00 30.59 2.27
273 278 1.335051 GCTTCCTCGAACTTTTGCACC 60.335 52.381 0.00 0.00 0.00 5.01
316 1969 2.433664 GGAAACCGCACGTCCGAT 60.434 61.111 0.00 0.00 0.00 4.18
319 1972 2.827959 GAAACCGCACGTCCGATTGC 62.828 60.000 0.00 0.00 35.26 3.56
324 1977 0.454285 CGCACGTCCGATTGCAAAAT 60.454 50.000 1.71 0.00 38.76 1.82
336 1992 4.382457 CGATTGCAAAATGAACACGTCAAT 59.618 37.500 1.71 0.00 40.50 2.57
352 2008 7.437748 ACACGTCAATAAAAATGGAAAATGGA 58.562 30.769 0.00 0.00 0.00 3.41
353 2009 7.928706 ACACGTCAATAAAAATGGAAAATGGAA 59.071 29.630 0.00 0.00 0.00 3.53
360 2016 2.629639 ATGGAAAATGGAAACGCGAC 57.370 45.000 15.93 3.33 0.00 5.19
361 2017 0.236187 TGGAAAATGGAAACGCGACG 59.764 50.000 15.93 0.00 0.00 5.12
672 2735 1.431440 CACCACCACACCAAACACG 59.569 57.895 0.00 0.00 0.00 4.49
678 2741 1.241315 CCACACCAAACACGGATCCC 61.241 60.000 6.06 0.00 0.00 3.85
688 2751 1.097547 CACGGATCCCAGCCAATCAC 61.098 60.000 6.06 0.00 0.00 3.06
689 2752 1.224315 CGGATCCCAGCCAATCACA 59.776 57.895 6.06 0.00 0.00 3.58
694 2757 1.228521 CCCAGCCAATCACACACCA 60.229 57.895 0.00 0.00 0.00 4.17
1133 3213 4.452733 GGTCGTCCTTCCTGCCGG 62.453 72.222 0.00 0.00 0.00 6.13
1282 3368 2.683933 GGCGAGGAGGTGGAGGAA 60.684 66.667 0.00 0.00 0.00 3.36
1793 3893 1.261480 CTAGCATAGACCTCCGCCAT 58.739 55.000 0.00 0.00 42.77 4.40
1921 4024 0.253327 CCGCTCTAGCTTTTCCCCTT 59.747 55.000 0.00 0.00 39.32 3.95
1922 4025 1.373570 CGCTCTAGCTTTTCCCCTTG 58.626 55.000 0.00 0.00 39.32 3.61
1929 4032 2.034999 TTTTCCCCTTGGCGCGAT 59.965 55.556 12.10 0.00 0.00 4.58
1961 4064 4.287720 TCGTGATCGAGTAATTGGAATCG 58.712 43.478 0.00 0.00 41.35 3.34
2072 4186 1.155424 TGTTCTTGGTTCGGTGCGAC 61.155 55.000 0.00 0.00 34.89 5.19
2086 4200 3.611057 CGGTGCGACTGAAGTTAGTTAGT 60.611 47.826 0.00 0.00 0.00 2.24
2087 4201 4.304939 GGTGCGACTGAAGTTAGTTAGTT 58.695 43.478 0.00 0.00 0.00 2.24
2088 4202 5.464168 GGTGCGACTGAAGTTAGTTAGTTA 58.536 41.667 0.00 0.00 0.00 2.24
2106 4220 4.820897 AGTTACTTGATTGATGCGTCTCA 58.179 39.130 7.58 0.34 0.00 3.27
2128 4242 4.067896 AGTTATGCCATGGATGATCGAAC 58.932 43.478 18.40 8.73 0.00 3.95
2129 4243 2.643995 ATGCCATGGATGATCGAACA 57.356 45.000 18.40 0.00 0.00 3.18
2213 4327 3.303135 TCGGCGGCAACTGAGACT 61.303 61.111 10.53 0.00 0.00 3.24
2242 4356 6.091437 ACGTCTCCTCGAGTAATTTAAAGTG 58.909 40.000 12.31 0.00 34.70 3.16
2253 4367 9.379791 CGAGTAATTTAAAGTGGAGTAGGATTT 57.620 33.333 0.00 0.00 0.00 2.17
2255 4369 8.957466 AGTAATTTAAAGTGGAGTAGGATTTGC 58.043 33.333 0.00 0.00 0.00 3.68
2277 4396 5.047092 TGCTGATGAAGAGTGTGAGACATAA 60.047 40.000 0.00 0.00 0.00 1.90
2312 4431 3.226537 GATTGCCGGGCCCATTCC 61.227 66.667 24.92 6.82 0.00 3.01
2323 4442 1.032794 GCCCATTCCGGATCCTTTTC 58.967 55.000 4.15 0.00 36.56 2.29
2324 4443 1.684869 GCCCATTCCGGATCCTTTTCA 60.685 52.381 4.15 0.00 36.56 2.69
2325 4444 2.949447 CCCATTCCGGATCCTTTTCAT 58.051 47.619 4.15 0.00 36.56 2.57
2340 4459 0.669012 TTCATGCTACAGCGTTCGCA 60.669 50.000 18.95 0.00 45.83 5.10
2342 4461 1.079819 ATGCTACAGCGTTCGCAGT 60.080 52.632 18.95 18.33 45.83 4.40
2364 4483 2.202878 CGCGTCCGGTCCAATGAT 60.203 61.111 0.00 0.00 0.00 2.45
2366 4485 1.153449 GCGTCCGGTCCAATGATGA 60.153 57.895 0.00 0.00 0.00 2.92
2372 4491 0.179148 CGGTCCAATGATGACGACGA 60.179 55.000 0.00 0.00 33.46 4.20
2381 4500 5.234116 CCAATGATGACGACGACATGATTAA 59.766 40.000 19.93 2.88 31.95 1.40
2382 4501 5.890110 ATGATGACGACGACATGATTAAC 57.110 39.130 17.19 2.95 0.00 2.01
2383 4502 4.739195 TGATGACGACGACATGATTAACA 58.261 39.130 17.19 5.43 0.00 2.41
2384 4503 5.348164 TGATGACGACGACATGATTAACAT 58.652 37.500 17.19 0.00 40.17 2.71
2399 4518 8.948631 ATGATTAACATGATTACGACACTTCT 57.051 30.769 0.00 0.00 37.87 2.85
2400 4519 8.407457 TGATTAACATGATTACGACACTTCTC 57.593 34.615 0.00 0.00 0.00 2.87
2401 4520 8.032451 TGATTAACATGATTACGACACTTCTCA 58.968 33.333 0.00 0.00 0.00 3.27
2402 4521 8.771920 ATTAACATGATTACGACACTTCTCAA 57.228 30.769 0.00 0.00 0.00 3.02
2403 4522 8.596271 TTAACATGATTACGACACTTCTCAAA 57.404 30.769 0.00 0.00 0.00 2.69
2404 4523 7.490962 AACATGATTACGACACTTCTCAAAA 57.509 32.000 0.00 0.00 0.00 2.44
2405 4524 7.490962 ACATGATTACGACACTTCTCAAAAA 57.509 32.000 0.00 0.00 0.00 1.94
2406 4525 7.352739 ACATGATTACGACACTTCTCAAAAAC 58.647 34.615 0.00 0.00 0.00 2.43
2407 4526 6.912203 TGATTACGACACTTCTCAAAAACA 57.088 33.333 0.00 0.00 0.00 2.83
2408 4527 7.490962 TGATTACGACACTTCTCAAAAACAT 57.509 32.000 0.00 0.00 0.00 2.71
2409 4528 7.351981 TGATTACGACACTTCTCAAAAACATG 58.648 34.615 0.00 0.00 0.00 3.21
2410 4529 6.912203 TTACGACACTTCTCAAAAACATGA 57.088 33.333 0.00 0.00 0.00 3.07
2411 4530 7.490962 TTACGACACTTCTCAAAAACATGAT 57.509 32.000 0.00 0.00 0.00 2.45
2412 4531 6.377327 ACGACACTTCTCAAAAACATGATT 57.623 33.333 0.00 0.00 0.00 2.57
2413 4532 7.490962 ACGACACTTCTCAAAAACATGATTA 57.509 32.000 0.00 0.00 0.00 1.75
2414 4533 7.576236 ACGACACTTCTCAAAAACATGATTAG 58.424 34.615 0.00 0.00 0.00 1.73
2415 4534 7.226720 ACGACACTTCTCAAAAACATGATTAGT 59.773 33.333 0.00 0.00 0.00 2.24
2416 4535 8.070171 CGACACTTCTCAAAAACATGATTAGTT 58.930 33.333 0.00 0.00 0.00 2.24
2433 4552 9.866655 ATGATTAGTTAGAAATTGATTAGGGCA 57.133 29.630 0.00 0.00 0.00 5.36
2434 4553 9.866655 TGATTAGTTAGAAATTGATTAGGGCAT 57.133 29.630 0.00 0.00 0.00 4.40
2438 4557 8.829373 AGTTAGAAATTGATTAGGGCATTTCT 57.171 30.769 10.09 10.09 40.25 2.52
2439 4558 9.920946 AGTTAGAAATTGATTAGGGCATTTCTA 57.079 29.630 8.47 8.47 38.69 2.10
2442 4561 8.829373 AGAAATTGATTAGGGCATTTCTAACT 57.171 30.769 4.54 0.00 36.82 2.24
2443 4562 8.689972 AGAAATTGATTAGGGCATTTCTAACTG 58.310 33.333 4.54 0.00 36.82 3.16
2444 4563 8.593945 AAATTGATTAGGGCATTTCTAACTGA 57.406 30.769 0.00 0.00 30.61 3.41
2445 4564 8.773033 AATTGATTAGGGCATTTCTAACTGAT 57.227 30.769 0.00 0.00 30.61 2.90
2446 4565 8.773033 ATTGATTAGGGCATTTCTAACTGATT 57.227 30.769 0.00 0.00 30.61 2.57
2447 4566 8.593945 TTGATTAGGGCATTTCTAACTGATTT 57.406 30.769 0.00 0.00 30.61 2.17
2448 4567 8.225603 TGATTAGGGCATTTCTAACTGATTTC 57.774 34.615 0.00 0.00 30.61 2.17
2449 4568 7.285401 TGATTAGGGCATTTCTAACTGATTTCC 59.715 37.037 0.00 0.00 30.61 3.13
2450 4569 4.934356 AGGGCATTTCTAACTGATTTCCA 58.066 39.130 0.00 0.00 0.00 3.53
2451 4570 5.332743 AGGGCATTTCTAACTGATTTCCAA 58.667 37.500 0.00 0.00 0.00 3.53
2452 4571 5.960202 AGGGCATTTCTAACTGATTTCCAAT 59.040 36.000 0.00 0.00 0.00 3.16
2453 4572 7.125391 AGGGCATTTCTAACTGATTTCCAATA 58.875 34.615 0.00 0.00 0.00 1.90
2454 4573 7.619302 AGGGCATTTCTAACTGATTTCCAATAA 59.381 33.333 0.00 0.00 0.00 1.40
2455 4574 7.706607 GGGCATTTCTAACTGATTTCCAATAAC 59.293 37.037 0.00 0.00 0.00 1.89
2456 4575 7.706607 GGCATTTCTAACTGATTTCCAATAACC 59.293 37.037 0.00 0.00 0.00 2.85
2457 4576 7.432252 GCATTTCTAACTGATTTCCAATAACCG 59.568 37.037 0.00 0.00 0.00 4.44
2458 4577 6.995511 TTCTAACTGATTTCCAATAACCGG 57.004 37.500 0.00 0.00 0.00 5.28
2459 4578 6.057321 TCTAACTGATTTCCAATAACCGGT 57.943 37.500 0.00 0.00 0.00 5.28
2460 4579 6.478129 TCTAACTGATTTCCAATAACCGGTT 58.522 36.000 25.64 25.64 0.00 4.44
2461 4580 7.622713 TCTAACTGATTTCCAATAACCGGTTA 58.377 34.615 28.40 28.40 0.00 2.85
2462 4581 6.753107 AACTGATTTCCAATAACCGGTTAG 57.247 37.500 29.49 17.98 0.00 2.34
2463 4582 6.057321 ACTGATTTCCAATAACCGGTTAGA 57.943 37.500 29.49 19.52 0.00 2.10
2464 4583 6.113411 ACTGATTTCCAATAACCGGTTAGAG 58.887 40.000 29.49 22.96 0.00 2.43
2465 4584 5.433526 TGATTTCCAATAACCGGTTAGAGG 58.566 41.667 29.49 29.23 0.00 3.69
2466 4585 5.190132 TGATTTCCAATAACCGGTTAGAGGA 59.810 40.000 31.53 31.53 33.16 3.71
2467 4586 4.748277 TTCCAATAACCGGTTAGAGGAG 57.252 45.455 32.30 20.69 35.10 3.69
2468 4587 3.985127 TCCAATAACCGGTTAGAGGAGA 58.015 45.455 31.53 21.28 32.08 3.71
2469 4588 3.703052 TCCAATAACCGGTTAGAGGAGAC 59.297 47.826 31.53 0.00 32.08 3.36
2470 4589 3.181468 CCAATAACCGGTTAGAGGAGACC 60.181 52.174 30.26 0.00 0.00 3.85
2476 4595 0.822811 GGTTAGAGGAGACCGGAACC 59.177 60.000 9.46 4.83 31.23 3.62
2477 4596 1.619160 GGTTAGAGGAGACCGGAACCT 60.619 57.143 9.46 13.74 34.15 3.50
2478 4597 2.357569 GGTTAGAGGAGACCGGAACCTA 60.358 54.545 9.46 0.00 34.15 3.08
2479 4598 3.359950 GTTAGAGGAGACCGGAACCTAA 58.640 50.000 9.46 3.10 33.89 2.69
2480 4599 1.849977 AGAGGAGACCGGAACCTAAC 58.150 55.000 9.46 2.86 33.89 2.34
2481 4600 0.822811 GAGGAGACCGGAACCTAACC 59.177 60.000 9.46 1.27 33.89 2.85
2489 4608 2.973420 GGAACCTAACCGATCGCTG 58.027 57.895 10.32 0.00 0.00 5.18
2490 4609 0.175073 GGAACCTAACCGATCGCTGT 59.825 55.000 10.32 0.00 0.00 4.40
2491 4610 1.406539 GGAACCTAACCGATCGCTGTA 59.593 52.381 10.32 0.00 0.00 2.74
2492 4611 2.543238 GGAACCTAACCGATCGCTGTAG 60.543 54.545 10.32 9.91 0.00 2.74
2493 4612 2.048444 ACCTAACCGATCGCTGTAGA 57.952 50.000 10.32 0.00 0.00 2.59
2494 4613 2.584236 ACCTAACCGATCGCTGTAGAT 58.416 47.619 10.32 0.00 0.00 1.98
2495 4614 2.553172 ACCTAACCGATCGCTGTAGATC 59.447 50.000 10.32 5.56 42.58 2.75
2496 4615 2.552743 CCTAACCGATCGCTGTAGATCA 59.447 50.000 10.32 0.00 45.39 2.92
2497 4616 3.191581 CCTAACCGATCGCTGTAGATCAT 59.808 47.826 10.32 0.00 45.39 2.45
2498 4617 4.395231 CCTAACCGATCGCTGTAGATCATA 59.605 45.833 10.32 0.00 45.39 2.15
2499 4618 4.427096 AACCGATCGCTGTAGATCATAG 57.573 45.455 10.32 0.00 45.39 2.23
2500 4619 3.413327 ACCGATCGCTGTAGATCATAGT 58.587 45.455 10.32 0.00 45.39 2.12
2501 4620 3.189495 ACCGATCGCTGTAGATCATAGTG 59.811 47.826 10.32 0.00 45.39 2.74
2502 4621 3.426829 CCGATCGCTGTAGATCATAGTGG 60.427 52.174 10.32 4.82 45.39 4.00
2503 4622 3.437049 CGATCGCTGTAGATCATAGTGGA 59.563 47.826 0.26 0.00 45.39 4.02
2504 4623 4.083271 CGATCGCTGTAGATCATAGTGGAA 60.083 45.833 0.26 0.00 45.39 3.53
2505 4624 5.392487 CGATCGCTGTAGATCATAGTGGAAT 60.392 44.000 0.26 0.00 45.39 3.01
2506 4625 6.183360 CGATCGCTGTAGATCATAGTGGAATA 60.183 42.308 0.26 0.00 45.39 1.75
2507 4626 7.467947 CGATCGCTGTAGATCATAGTGGAATAT 60.468 40.741 0.26 0.00 45.39 1.28
2508 4627 8.753497 ATCGCTGTAGATCATAGTGGAATATA 57.247 34.615 0.00 0.00 0.00 0.86
2509 4628 8.575649 TCGCTGTAGATCATAGTGGAATATAA 57.424 34.615 0.00 0.00 0.00 0.98
2510 4629 9.020731 TCGCTGTAGATCATAGTGGAATATAAA 57.979 33.333 0.00 0.00 0.00 1.40
2511 4630 9.639601 CGCTGTAGATCATAGTGGAATATAAAA 57.360 33.333 0.00 0.00 0.00 1.52
2523 4642 7.712797 AGTGGAATATAAAATTTACTTGGCCG 58.287 34.615 0.00 0.00 0.00 6.13
2524 4643 6.419710 GTGGAATATAAAATTTACTTGGCCGC 59.580 38.462 0.00 0.00 0.00 6.53
2525 4644 5.924254 GGAATATAAAATTTACTTGGCCGCC 59.076 40.000 1.04 1.04 0.00 6.13
2526 4645 2.923605 TAAAATTTACTTGGCCGCCG 57.076 45.000 4.58 0.00 0.00 6.46
2527 4646 0.389296 AAAATTTACTTGGCCGCCGC 60.389 50.000 4.58 0.00 0.00 6.53
2528 4647 1.528292 AAATTTACTTGGCCGCCGCA 61.528 50.000 4.58 0.00 36.38 5.69
2529 4648 1.528292 AATTTACTTGGCCGCCGCAA 61.528 50.000 4.58 0.00 36.38 4.85
2530 4649 1.528292 ATTTACTTGGCCGCCGCAAA 61.528 50.000 4.58 2.70 36.38 3.68
2531 4650 1.528292 TTTACTTGGCCGCCGCAAAT 61.528 50.000 4.58 0.00 36.38 2.32
2532 4651 1.928706 TTACTTGGCCGCCGCAAATC 61.929 55.000 4.58 0.00 36.38 2.17
2533 4652 2.813226 TACTTGGCCGCCGCAAATCT 62.813 55.000 4.58 0.00 36.38 2.40
2534 4653 2.988684 TTGGCCGCCGCAAATCTT 60.989 55.556 4.58 0.00 36.38 2.40
2535 4654 2.872337 CTTGGCCGCCGCAAATCTTC 62.872 60.000 4.58 0.00 36.38 2.87
2536 4655 4.193334 GGCCGCCGCAAATCTTCC 62.193 66.667 0.00 0.00 36.38 3.46
2537 4656 3.134127 GCCGCCGCAAATCTTCCT 61.134 61.111 0.00 0.00 34.03 3.36
2538 4657 1.817941 GCCGCCGCAAATCTTCCTA 60.818 57.895 0.00 0.00 34.03 2.94
2539 4658 1.166531 GCCGCCGCAAATCTTCCTAT 61.167 55.000 0.00 0.00 34.03 2.57
2540 4659 1.876416 GCCGCCGCAAATCTTCCTATA 60.876 52.381 0.00 0.00 34.03 1.31
2541 4660 2.699954 CCGCCGCAAATCTTCCTATAT 58.300 47.619 0.00 0.00 0.00 0.86
2542 4661 3.074412 CCGCCGCAAATCTTCCTATATT 58.926 45.455 0.00 0.00 0.00 1.28
2543 4662 3.502211 CCGCCGCAAATCTTCCTATATTT 59.498 43.478 0.00 0.00 0.00 1.40
2544 4663 4.693566 CCGCCGCAAATCTTCCTATATTTA 59.306 41.667 0.00 0.00 0.00 1.40
2545 4664 5.354234 CCGCCGCAAATCTTCCTATATTTAT 59.646 40.000 0.00 0.00 0.00 1.40
2546 4665 6.128007 CCGCCGCAAATCTTCCTATATTTATT 60.128 38.462 0.00 0.00 0.00 1.40
2547 4666 7.305474 CGCCGCAAATCTTCCTATATTTATTT 58.695 34.615 0.00 0.00 0.00 1.40
2548 4667 7.481798 CGCCGCAAATCTTCCTATATTTATTTC 59.518 37.037 0.00 0.00 0.00 2.17
2549 4668 8.296713 GCCGCAAATCTTCCTATATTTATTTCA 58.703 33.333 0.00 0.00 0.00 2.69
2556 4675 8.689251 TCTTCCTATATTTATTTCATCGCTCG 57.311 34.615 0.00 0.00 0.00 5.03
2557 4676 7.759886 TCTTCCTATATTTATTTCATCGCTCGG 59.240 37.037 0.00 0.00 0.00 4.63
2558 4677 5.810587 TCCTATATTTATTTCATCGCTCGGC 59.189 40.000 0.00 0.00 0.00 5.54
2573 4692 4.289312 GGCGGCCGAGTAAGAAAA 57.711 55.556 33.48 0.00 0.00 2.29
2574 4693 2.776659 GGCGGCCGAGTAAGAAAAT 58.223 52.632 33.48 0.00 0.00 1.82
2575 4694 0.656259 GGCGGCCGAGTAAGAAAATC 59.344 55.000 33.48 5.78 0.00 2.17
2576 4695 1.653151 GCGGCCGAGTAAGAAAATCT 58.347 50.000 33.48 0.00 0.00 2.40
2577 4696 1.593469 GCGGCCGAGTAAGAAAATCTC 59.407 52.381 33.48 0.62 0.00 2.75
2578 4697 2.202566 CGGCCGAGTAAGAAAATCTCC 58.797 52.381 24.07 0.00 0.00 3.71
2579 4698 2.159085 CGGCCGAGTAAGAAAATCTCCT 60.159 50.000 24.07 0.00 0.00 3.69
2580 4699 3.459145 GGCCGAGTAAGAAAATCTCCTC 58.541 50.000 0.00 0.00 0.00 3.71
2581 4700 3.459145 GCCGAGTAAGAAAATCTCCTCC 58.541 50.000 0.00 0.00 0.00 4.30
2582 4701 3.133183 GCCGAGTAAGAAAATCTCCTCCT 59.867 47.826 0.00 0.00 0.00 3.69
2583 4702 4.341520 GCCGAGTAAGAAAATCTCCTCCTA 59.658 45.833 0.00 0.00 0.00 2.94
2584 4703 5.011227 GCCGAGTAAGAAAATCTCCTCCTAT 59.989 44.000 0.00 0.00 0.00 2.57
2585 4704 6.683715 CCGAGTAAGAAAATCTCCTCCTATC 58.316 44.000 0.00 0.00 0.00 2.08
2586 4705 6.492087 CCGAGTAAGAAAATCTCCTCCTATCT 59.508 42.308 0.00 0.00 0.00 1.98
2587 4706 7.014808 CCGAGTAAGAAAATCTCCTCCTATCTT 59.985 40.741 0.00 0.00 0.00 2.40
2588 4707 8.079809 CGAGTAAGAAAATCTCCTCCTATCTTC 58.920 40.741 0.00 0.00 0.00 2.87
2589 4708 8.257602 AGTAAGAAAATCTCCTCCTATCTTCC 57.742 38.462 0.00 0.00 0.00 3.46
2590 4709 8.071229 AGTAAGAAAATCTCCTCCTATCTTCCT 58.929 37.037 0.00 0.00 0.00 3.36
2591 4710 7.763564 AAGAAAATCTCCTCCTATCTTCCTT 57.236 36.000 0.00 0.00 0.00 3.36
2592 4711 7.763564 AGAAAATCTCCTCCTATCTTCCTTT 57.236 36.000 0.00 0.00 0.00 3.11
2593 4712 7.801104 AGAAAATCTCCTCCTATCTTCCTTTC 58.199 38.462 0.00 0.00 0.00 2.62
2594 4713 7.627293 AGAAAATCTCCTCCTATCTTCCTTTCT 59.373 37.037 0.00 0.00 0.00 2.52
2595 4714 6.994421 AATCTCCTCCTATCTTCCTTTCTC 57.006 41.667 0.00 0.00 0.00 2.87
2596 4715 5.742562 TCTCCTCCTATCTTCCTTTCTCT 57.257 43.478 0.00 0.00 0.00 3.10
2597 4716 5.454062 TCTCCTCCTATCTTCCTTTCTCTG 58.546 45.833 0.00 0.00 0.00 3.35
2598 4717 3.964031 TCCTCCTATCTTCCTTTCTCTGC 59.036 47.826 0.00 0.00 0.00 4.26
2599 4718 3.070878 CCTCCTATCTTCCTTTCTCTGCC 59.929 52.174 0.00 0.00 0.00 4.85
2600 4719 3.966665 CTCCTATCTTCCTTTCTCTGCCT 59.033 47.826 0.00 0.00 0.00 4.75
2601 4720 3.964031 TCCTATCTTCCTTTCTCTGCCTC 59.036 47.826 0.00 0.00 0.00 4.70
2602 4721 3.070878 CCTATCTTCCTTTCTCTGCCTCC 59.929 52.174 0.00 0.00 0.00 4.30
2603 4722 2.334006 TCTTCCTTTCTCTGCCTCCT 57.666 50.000 0.00 0.00 0.00 3.69
2604 4723 2.183679 TCTTCCTTTCTCTGCCTCCTC 58.816 52.381 0.00 0.00 0.00 3.71
2605 4724 2.187100 CTTCCTTTCTCTGCCTCCTCT 58.813 52.381 0.00 0.00 0.00 3.69
2606 4725 2.334006 TCCTTTCTCTGCCTCCTCTT 57.666 50.000 0.00 0.00 0.00 2.85
2607 4726 2.183679 TCCTTTCTCTGCCTCCTCTTC 58.816 52.381 0.00 0.00 0.00 2.87
2608 4727 2.187100 CCTTTCTCTGCCTCCTCTTCT 58.813 52.381 0.00 0.00 0.00 2.85
2609 4728 2.571202 CCTTTCTCTGCCTCCTCTTCTT 59.429 50.000 0.00 0.00 0.00 2.52
2610 4729 3.369366 CCTTTCTCTGCCTCCTCTTCTTC 60.369 52.174 0.00 0.00 0.00 2.87
2611 4730 1.859302 TCTCTGCCTCCTCTTCTTCC 58.141 55.000 0.00 0.00 0.00 3.46
2612 4731 0.829990 CTCTGCCTCCTCTTCTTCCC 59.170 60.000 0.00 0.00 0.00 3.97
2613 4732 0.618968 TCTGCCTCCTCTTCTTCCCC 60.619 60.000 0.00 0.00 0.00 4.81
2614 4733 0.620121 CTGCCTCCTCTTCTTCCCCT 60.620 60.000 0.00 0.00 0.00 4.79
2615 4734 0.618968 TGCCTCCTCTTCTTCCCCTC 60.619 60.000 0.00 0.00 0.00 4.30
2616 4735 0.326143 GCCTCCTCTTCTTCCCCTCT 60.326 60.000 0.00 0.00 0.00 3.69
2617 4736 1.788229 CCTCCTCTTCTTCCCCTCTC 58.212 60.000 0.00 0.00 0.00 3.20
2618 4737 1.691163 CCTCCTCTTCTTCCCCTCTCC 60.691 61.905 0.00 0.00 0.00 3.71
2619 4738 0.340208 TCCTCTTCTTCCCCTCTCCC 59.660 60.000 0.00 0.00 0.00 4.30
2620 4739 0.341609 CCTCTTCTTCCCCTCTCCCT 59.658 60.000 0.00 0.00 0.00 4.20
2621 4740 1.494960 CTCTTCTTCCCCTCTCCCTG 58.505 60.000 0.00 0.00 0.00 4.45
2622 4741 0.618968 TCTTCTTCCCCTCTCCCTGC 60.619 60.000 0.00 0.00 0.00 4.85
2623 4742 0.620121 CTTCTTCCCCTCTCCCTGCT 60.620 60.000 0.00 0.00 0.00 4.24
2624 4743 0.911525 TTCTTCCCCTCTCCCTGCTG 60.912 60.000 0.00 0.00 0.00 4.41
2625 4744 3.011517 TTCCCCTCTCCCTGCTGC 61.012 66.667 0.00 0.00 0.00 5.25
2628 4747 3.795041 CCCTCTCCCTGCTGCCAG 61.795 72.222 0.00 0.00 38.85 4.85
2629 4748 4.486503 CCTCTCCCTGCTGCCAGC 62.487 72.222 10.45 10.45 42.82 4.85
2639 4758 3.390521 CTGCCAGCACGTCCCCTA 61.391 66.667 0.00 0.00 0.00 3.53
2640 4759 3.665675 CTGCCAGCACGTCCCCTAC 62.666 68.421 0.00 0.00 0.00 3.18
2641 4760 4.468689 GCCAGCACGTCCCCTACC 62.469 72.222 0.00 0.00 0.00 3.18
2642 4761 3.782443 CCAGCACGTCCCCTACCC 61.782 72.222 0.00 0.00 0.00 3.69
2643 4762 2.683933 CAGCACGTCCCCTACCCT 60.684 66.667 0.00 0.00 0.00 4.34
2644 4763 2.122056 AGCACGTCCCCTACCCTT 59.878 61.111 0.00 0.00 0.00 3.95
2645 4764 1.988406 AGCACGTCCCCTACCCTTC 60.988 63.158 0.00 0.00 0.00 3.46
2646 4765 3.027675 GCACGTCCCCTACCCTTCC 62.028 68.421 0.00 0.00 0.00 3.46
2647 4766 2.040114 ACGTCCCCTACCCTTCCC 59.960 66.667 0.00 0.00 0.00 3.97
2648 4767 2.039951 CGTCCCCTACCCTTCCCA 59.960 66.667 0.00 0.00 0.00 4.37
2649 4768 1.614226 CGTCCCCTACCCTTCCCAA 60.614 63.158 0.00 0.00 0.00 4.12
2650 4769 1.907222 CGTCCCCTACCCTTCCCAAC 61.907 65.000 0.00 0.00 0.00 3.77
2651 4770 0.549413 GTCCCCTACCCTTCCCAACT 60.549 60.000 0.00 0.00 0.00 3.16
2652 4771 0.549169 TCCCCTACCCTTCCCAACTG 60.549 60.000 0.00 0.00 0.00 3.16
2653 4772 1.303282 CCCTACCCTTCCCAACTGC 59.697 63.158 0.00 0.00 0.00 4.40
2654 4773 1.303282 CCTACCCTTCCCAACTGCC 59.697 63.158 0.00 0.00 0.00 4.85
2655 4774 1.303282 CTACCCTTCCCAACTGCCC 59.697 63.158 0.00 0.00 0.00 5.36
2656 4775 2.211468 CTACCCTTCCCAACTGCCCC 62.211 65.000 0.00 0.00 0.00 5.80
2657 4776 2.723334 TACCCTTCCCAACTGCCCCT 62.723 60.000 0.00 0.00 0.00 4.79
2658 4777 2.854076 CCTTCCCAACTGCCCCTT 59.146 61.111 0.00 0.00 0.00 3.95
2659 4778 1.304464 CCTTCCCAACTGCCCCTTC 60.304 63.158 0.00 0.00 0.00 3.46
2660 4779 1.770324 CTTCCCAACTGCCCCTTCT 59.230 57.895 0.00 0.00 0.00 2.85
2661 4780 0.322906 CTTCCCAACTGCCCCTTCTC 60.323 60.000 0.00 0.00 0.00 2.87
2662 4781 0.772124 TTCCCAACTGCCCCTTCTCT 60.772 55.000 0.00 0.00 0.00 3.10
2663 4782 0.772124 TCCCAACTGCCCCTTCTCTT 60.772 55.000 0.00 0.00 0.00 2.85
2664 4783 0.322906 CCCAACTGCCCCTTCTCTTC 60.323 60.000 0.00 0.00 0.00 2.87
2665 4784 0.322906 CCAACTGCCCCTTCTCTTCC 60.323 60.000 0.00 0.00 0.00 3.46
2666 4785 0.322906 CAACTGCCCCTTCTCTTCCC 60.323 60.000 0.00 0.00 0.00 3.97
2667 4786 0.772124 AACTGCCCCTTCTCTTCCCA 60.772 55.000 0.00 0.00 0.00 4.37
2668 4787 0.772124 ACTGCCCCTTCTCTTCCCAA 60.772 55.000 0.00 0.00 0.00 4.12
2669 4788 0.627986 CTGCCCCTTCTCTTCCCAAT 59.372 55.000 0.00 0.00 0.00 3.16
2670 4789 0.332632 TGCCCCTTCTCTTCCCAATG 59.667 55.000 0.00 0.00 0.00 2.82
2671 4790 0.396278 GCCCCTTCTCTTCCCAATGG 60.396 60.000 0.00 0.00 0.00 3.16
2672 4791 0.396278 CCCCTTCTCTTCCCAATGGC 60.396 60.000 0.00 0.00 0.00 4.40
2673 4792 0.396278 CCCTTCTCTTCCCAATGGCC 60.396 60.000 0.00 0.00 0.00 5.36
2674 4793 0.749454 CCTTCTCTTCCCAATGGCCG 60.749 60.000 0.00 0.00 0.00 6.13
2675 4794 0.749454 CTTCTCTTCCCAATGGCCGG 60.749 60.000 0.00 0.00 0.00 6.13
2676 4795 1.204786 TTCTCTTCCCAATGGCCGGA 61.205 55.000 5.05 0.00 0.00 5.14
2677 4796 0.988145 TCTCTTCCCAATGGCCGGAT 60.988 55.000 5.05 0.00 0.00 4.18
2678 4797 0.820891 CTCTTCCCAATGGCCGGATG 60.821 60.000 5.05 0.83 0.00 3.51
2679 4798 1.227102 CTTCCCAATGGCCGGATGA 59.773 57.895 5.05 0.00 0.00 2.92
2680 4799 0.820891 CTTCCCAATGGCCGGATGAG 60.821 60.000 5.05 0.00 0.00 2.90
2681 4800 2.203394 CCCAATGGCCGGATGAGG 60.203 66.667 5.05 0.00 0.00 3.86
2682 4801 2.597340 CCAATGGCCGGATGAGGT 59.403 61.111 5.05 0.00 0.00 3.85
2683 4802 1.825191 CCAATGGCCGGATGAGGTG 60.825 63.158 5.05 0.00 0.00 4.00
2684 4803 1.825191 CAATGGCCGGATGAGGTGG 60.825 63.158 5.05 0.00 0.00 4.61
2688 4807 4.864334 GCCGGATGAGGTGGCTGG 62.864 72.222 5.05 0.00 45.40 4.85
2689 4808 3.083349 CCGGATGAGGTGGCTGGA 61.083 66.667 0.00 0.00 0.00 3.86
2690 4809 2.503061 CGGATGAGGTGGCTGGAG 59.497 66.667 0.00 0.00 0.00 3.86
2691 4810 2.914289 GGATGAGGTGGCTGGAGG 59.086 66.667 0.00 0.00 0.00 4.30
2692 4811 1.997874 GGATGAGGTGGCTGGAGGT 60.998 63.158 0.00 0.00 0.00 3.85
2693 4812 1.524482 GATGAGGTGGCTGGAGGTC 59.476 63.158 0.00 0.00 0.00 3.85
2694 4813 1.977293 GATGAGGTGGCTGGAGGTCC 61.977 65.000 0.00 0.00 0.00 4.46
2695 4814 3.403558 GAGGTGGCTGGAGGTCCC 61.404 72.222 0.00 0.00 34.29 4.46
2698 4817 4.035102 GTGGCTGGAGGTCCCCAC 62.035 72.222 8.25 8.25 39.82 4.61
2731 4850 4.477975 CCACGCTCGAGGGTCGTC 62.478 72.222 30.05 3.73 41.35 4.20
2732 4851 4.813526 CACGCTCGAGGGTCGTCG 62.814 72.222 30.05 17.87 41.35 5.12
2734 4853 4.517703 CGCTCGAGGGTCGTCGTC 62.518 72.222 20.59 0.00 41.35 4.20
2735 4854 3.126225 GCTCGAGGGTCGTCGTCT 61.126 66.667 15.58 0.00 41.35 4.18
2736 4855 2.688794 GCTCGAGGGTCGTCGTCTT 61.689 63.158 15.58 0.00 41.35 3.01
2737 4856 1.134901 CTCGAGGGTCGTCGTCTTG 59.865 63.158 3.91 0.00 41.35 3.02
2738 4857 2.504244 CGAGGGTCGTCGTCTTGC 60.504 66.667 5.09 0.00 34.72 4.01
2739 4858 2.504244 GAGGGTCGTCGTCTTGCG 60.504 66.667 0.00 0.00 43.01 4.85
2740 4859 3.966026 GAGGGTCGTCGTCTTGCGG 62.966 68.421 0.00 0.00 41.72 5.69
2746 4865 4.210304 GTCGTCTTGCGGCGCATC 62.210 66.667 36.69 25.29 38.76 3.91
2749 4868 3.567797 GTCTTGCGGCGCATCCTC 61.568 66.667 36.69 21.14 38.76 3.71
2779 4898 4.570663 CTCGTCCGATCCGCCCAC 62.571 72.222 0.00 0.00 0.00 4.61
2786 4905 4.815108 GATCCGCCCACCCCAACC 62.815 72.222 0.00 0.00 0.00 3.77
2791 4910 4.376170 GCCCACCCCAACCCGATT 62.376 66.667 0.00 0.00 0.00 3.34
2792 4911 2.044352 CCCACCCCAACCCGATTC 60.044 66.667 0.00 0.00 0.00 2.52
2793 4912 2.437716 CCACCCCAACCCGATTCG 60.438 66.667 0.00 0.00 0.00 3.34
2794 4913 3.131478 CACCCCAACCCGATTCGC 61.131 66.667 0.00 0.00 0.00 4.70
2795 4914 4.419921 ACCCCAACCCGATTCGCC 62.420 66.667 0.00 0.00 0.00 5.54
2797 4916 4.460683 CCCAACCCGATTCGCCGA 62.461 66.667 0.00 0.00 0.00 5.54
2798 4917 3.192922 CCAACCCGATTCGCCGAC 61.193 66.667 0.00 0.00 0.00 4.79
2799 4918 2.125673 CAACCCGATTCGCCGACT 60.126 61.111 0.00 0.00 0.00 4.18
2800 4919 1.740296 CAACCCGATTCGCCGACTT 60.740 57.895 0.00 0.00 0.00 3.01
2801 4920 1.447314 AACCCGATTCGCCGACTTC 60.447 57.895 0.00 0.00 0.00 3.01
2802 4921 2.585247 CCCGATTCGCCGACTTCC 60.585 66.667 0.00 0.00 0.00 3.46
2803 4922 2.585247 CCGATTCGCCGACTTCCC 60.585 66.667 0.00 0.00 0.00 3.97
2804 4923 2.954868 CGATTCGCCGACTTCCCG 60.955 66.667 0.00 0.00 0.00 5.14
2805 4924 3.262686 GATTCGCCGACTTCCCGC 61.263 66.667 0.00 0.00 0.00 6.13
2806 4925 4.077184 ATTCGCCGACTTCCCGCA 62.077 61.111 0.00 0.00 0.00 5.69
2807 4926 4.735132 TTCGCCGACTTCCCGCAG 62.735 66.667 0.00 0.00 0.00 5.18
2811 4930 4.821589 CCGACTTCCCGCAGCTCC 62.822 72.222 0.00 0.00 0.00 4.70
2812 4931 4.821589 CGACTTCCCGCAGCTCCC 62.822 72.222 0.00 0.00 0.00 4.30
2813 4932 3.394836 GACTTCCCGCAGCTCCCT 61.395 66.667 0.00 0.00 0.00 4.20
2814 4933 3.378399 GACTTCCCGCAGCTCCCTC 62.378 68.421 0.00 0.00 0.00 4.30
2815 4934 4.168291 CTTCCCGCAGCTCCCTCC 62.168 72.222 0.00 0.00 0.00 4.30
2822 4941 4.834453 CAGCTCCCTCCGCTGCTG 62.834 72.222 0.00 0.00 46.98 4.41
2825 4944 4.834453 CTCCCTCCGCTGCTGCAG 62.834 72.222 24.80 24.80 39.64 4.41
2848 4967 3.885521 CGTCGCGGAGGACCTACC 61.886 72.222 6.13 0.00 39.35 3.18
2857 4976 2.439883 GGACCTACCTCGGCGTCT 60.440 66.667 6.85 0.00 35.41 4.18
2858 4977 2.772691 GGACCTACCTCGGCGTCTG 61.773 68.421 6.85 0.00 35.41 3.51
2859 4978 1.748122 GACCTACCTCGGCGTCTGA 60.748 63.158 6.85 0.00 0.00 3.27
2860 4979 1.991099 GACCTACCTCGGCGTCTGAC 61.991 65.000 6.85 0.00 0.00 3.51
2861 4980 2.044555 CCTACCTCGGCGTCTGACA 61.045 63.158 6.85 0.00 0.00 3.58
2862 4981 1.384989 CCTACCTCGGCGTCTGACAT 61.385 60.000 6.85 0.00 0.00 3.06
2863 4982 0.029567 CTACCTCGGCGTCTGACATC 59.970 60.000 6.85 0.00 0.00 3.06
2864 4983 1.712018 TACCTCGGCGTCTGACATCG 61.712 60.000 6.85 10.51 0.00 3.84
2870 4989 4.868195 CGTCTGACATCGCTGACA 57.132 55.556 8.73 0.00 36.79 3.58
2871 4990 3.335737 CGTCTGACATCGCTGACAT 57.664 52.632 8.73 0.00 36.79 3.06
2872 4991 0.919300 CGTCTGACATCGCTGACATG 59.081 55.000 8.73 0.00 36.79 3.21
2873 4992 1.284657 GTCTGACATCGCTGACATGG 58.715 55.000 2.24 0.00 36.91 3.66
2874 4993 0.897621 TCTGACATCGCTGACATGGT 59.102 50.000 0.00 0.00 0.00 3.55
2875 4994 1.276138 TCTGACATCGCTGACATGGTT 59.724 47.619 0.00 0.00 0.00 3.67
2876 4995 1.395954 CTGACATCGCTGACATGGTTG 59.604 52.381 0.00 0.00 0.00 3.77
2877 4996 0.729116 GACATCGCTGACATGGTTGG 59.271 55.000 0.00 0.00 0.00 3.77
2878 4997 0.036732 ACATCGCTGACATGGTTGGT 59.963 50.000 0.00 0.00 0.00 3.67
2879 4998 0.448990 CATCGCTGACATGGTTGGTG 59.551 55.000 0.00 0.00 0.00 4.17
2880 4999 0.677731 ATCGCTGACATGGTTGGTGG 60.678 55.000 0.00 0.00 0.00 4.61
2881 5000 1.302431 CGCTGACATGGTTGGTGGA 60.302 57.895 0.00 0.00 0.00 4.02
2882 5001 1.300971 CGCTGACATGGTTGGTGGAG 61.301 60.000 0.00 0.00 0.00 3.86
2883 5002 0.036732 GCTGACATGGTTGGTGGAGA 59.963 55.000 0.00 0.00 0.00 3.71
2884 5003 1.340405 GCTGACATGGTTGGTGGAGAT 60.340 52.381 0.00 0.00 0.00 2.75
2885 5004 2.636830 CTGACATGGTTGGTGGAGATC 58.363 52.381 0.00 0.00 0.00 2.75
2886 5005 1.984424 TGACATGGTTGGTGGAGATCA 59.016 47.619 0.00 0.00 0.00 2.92
2887 5006 2.290260 TGACATGGTTGGTGGAGATCAC 60.290 50.000 0.00 0.00 45.34 3.06
2896 5015 0.970937 GTGGAGATCACCGACCAGGA 60.971 60.000 4.63 0.00 45.00 3.86
2897 5016 0.684479 TGGAGATCACCGACCAGGAG 60.684 60.000 4.63 0.00 45.00 3.69
2898 5017 0.395862 GGAGATCACCGACCAGGAGA 60.396 60.000 0.00 0.00 45.00 3.71
2899 5018 0.741915 GAGATCACCGACCAGGAGAC 59.258 60.000 0.00 0.00 42.37 3.36
2900 5019 0.684805 AGATCACCGACCAGGAGACC 60.685 60.000 0.00 0.00 42.37 3.85
2901 5020 1.677637 GATCACCGACCAGGAGACCC 61.678 65.000 0.00 0.00 42.37 4.46
2902 5021 2.455960 ATCACCGACCAGGAGACCCA 62.456 60.000 0.00 0.00 42.37 4.51
2903 5022 2.603776 ACCGACCAGGAGACCCAC 60.604 66.667 0.00 0.00 45.00 4.61
2904 5023 2.603473 CCGACCAGGAGACCCACA 60.603 66.667 0.00 0.00 45.00 4.17
2905 5024 2.214216 CCGACCAGGAGACCCACAA 61.214 63.158 0.00 0.00 45.00 3.33
2906 5025 1.293498 CGACCAGGAGACCCACAAG 59.707 63.158 0.00 0.00 33.88 3.16
2907 5026 1.185618 CGACCAGGAGACCCACAAGA 61.186 60.000 0.00 0.00 33.88 3.02
2908 5027 0.610687 GACCAGGAGACCCACAAGAG 59.389 60.000 0.00 0.00 33.88 2.85
2909 5028 0.838122 ACCAGGAGACCCACAAGAGG 60.838 60.000 0.00 0.00 33.88 3.69
2910 5029 0.545309 CCAGGAGACCCACAAGAGGA 60.545 60.000 0.00 0.00 33.88 3.71
2911 5030 1.352083 CAGGAGACCCACAAGAGGAA 58.648 55.000 0.00 0.00 33.88 3.36
2912 5031 1.277557 CAGGAGACCCACAAGAGGAAG 59.722 57.143 0.00 0.00 33.88 3.46
2913 5032 1.132689 AGGAGACCCACAAGAGGAAGT 60.133 52.381 0.00 0.00 33.88 3.01
2914 5033 1.002544 GGAGACCCACAAGAGGAAGTG 59.997 57.143 0.00 0.00 35.56 3.16
2919 5038 3.217242 CACAAGAGGAAGTGGGTCG 57.783 57.895 0.00 0.00 32.24 4.79
2920 5039 0.320771 CACAAGAGGAAGTGGGTCGG 60.321 60.000 0.00 0.00 32.24 4.79
2921 5040 1.296715 CAAGAGGAAGTGGGTCGGG 59.703 63.158 0.00 0.00 0.00 5.14
2922 5041 1.152096 AAGAGGAAGTGGGTCGGGT 60.152 57.895 0.00 0.00 0.00 5.28
2923 5042 1.192803 AAGAGGAAGTGGGTCGGGTC 61.193 60.000 0.00 0.00 0.00 4.46
2924 5043 2.995574 AGGAAGTGGGTCGGGTCG 60.996 66.667 0.00 0.00 0.00 4.79
2925 5044 3.308705 GGAAGTGGGTCGGGTCGT 61.309 66.667 0.00 0.00 0.00 4.34
2926 5045 2.739132 GAAGTGGGTCGGGTCGTT 59.261 61.111 0.00 0.00 0.00 3.85
2927 5046 1.373873 GAAGTGGGTCGGGTCGTTC 60.374 63.158 0.00 0.00 0.00 3.95
2928 5047 2.776670 GAAGTGGGTCGGGTCGTTCC 62.777 65.000 0.00 0.00 0.00 3.62
2929 5048 3.618750 GTGGGTCGGGTCGTTCCA 61.619 66.667 2.42 0.00 38.11 3.53
2930 5049 3.618750 TGGGTCGGGTCGTTCCAC 61.619 66.667 2.42 0.00 38.11 4.02
2931 5050 3.618750 GGGTCGGGTCGTTCCACA 61.619 66.667 2.42 0.00 38.11 4.17
2932 5051 2.356673 GGTCGGGTCGTTCCACAC 60.357 66.667 2.42 0.00 38.11 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.662619 CTTCAACAGACCGCTTGCAA 59.337 50.000 0.00 0.00 0.00 4.08
1 2 0.179059 TCTTCAACAGACCGCTTGCA 60.179 50.000 0.00 0.00 0.00 4.08
2 3 1.160137 ATCTTCAACAGACCGCTTGC 58.840 50.000 0.00 0.00 32.83 4.01
3 4 5.356882 TTTAATCTTCAACAGACCGCTTG 57.643 39.130 0.00 0.00 32.83 4.01
4 5 6.385649 TTTTTAATCTTCAACAGACCGCTT 57.614 33.333 0.00 0.00 32.83 4.68
5 6 6.575162 ATTTTTAATCTTCAACAGACCGCT 57.425 33.333 0.00 0.00 32.83 5.52
6 7 6.640907 ACAATTTTTAATCTTCAACAGACCGC 59.359 34.615 0.00 0.00 32.83 5.68
7 8 8.574196 AACAATTTTTAATCTTCAACAGACCG 57.426 30.769 0.00 0.00 32.83 4.79
10 11 9.541143 GGGAAACAATTTTTAATCTTCAACAGA 57.459 29.630 0.00 0.00 35.33 3.41
11 12 8.487176 CGGGAAACAATTTTTAATCTTCAACAG 58.513 33.333 0.00 0.00 0.00 3.16
12 13 7.042389 GCGGGAAACAATTTTTAATCTTCAACA 60.042 33.333 0.00 0.00 0.00 3.33
13 14 7.042389 TGCGGGAAACAATTTTTAATCTTCAAC 60.042 33.333 0.00 0.00 0.00 3.18
14 15 6.986817 TGCGGGAAACAATTTTTAATCTTCAA 59.013 30.769 0.00 0.00 0.00 2.69
15 16 6.516718 TGCGGGAAACAATTTTTAATCTTCA 58.483 32.000 0.00 0.00 0.00 3.02
16 17 7.414814 TTGCGGGAAACAATTTTTAATCTTC 57.585 32.000 0.00 0.00 0.00 2.87
17 18 7.793927 TTTGCGGGAAACAATTTTTAATCTT 57.206 28.000 0.00 0.00 0.00 2.40
18 19 7.793927 TTTTGCGGGAAACAATTTTTAATCT 57.206 28.000 0.00 0.00 0.00 2.40
42 43 9.150348 CCGTATGCAATTTTTAATCTTCCTTTT 57.850 29.630 0.00 0.00 0.00 2.27
43 44 7.763985 CCCGTATGCAATTTTTAATCTTCCTTT 59.236 33.333 0.00 0.00 0.00 3.11
44 45 7.264947 CCCGTATGCAATTTTTAATCTTCCTT 58.735 34.615 0.00 0.00 0.00 3.36
45 46 6.682861 GCCCGTATGCAATTTTTAATCTTCCT 60.683 38.462 0.00 0.00 0.00 3.36
46 47 5.462068 GCCCGTATGCAATTTTTAATCTTCC 59.538 40.000 0.00 0.00 0.00 3.46
47 48 5.173131 CGCCCGTATGCAATTTTTAATCTTC 59.827 40.000 0.00 0.00 0.00 2.87
48 49 5.040635 CGCCCGTATGCAATTTTTAATCTT 58.959 37.500 0.00 0.00 0.00 2.40
49 50 4.336993 TCGCCCGTATGCAATTTTTAATCT 59.663 37.500 0.00 0.00 0.00 2.40
50 51 4.439776 GTCGCCCGTATGCAATTTTTAATC 59.560 41.667 0.00 0.00 0.00 1.75
51 52 4.142359 TGTCGCCCGTATGCAATTTTTAAT 60.142 37.500 0.00 0.00 0.00 1.40
52 53 3.190744 TGTCGCCCGTATGCAATTTTTAA 59.809 39.130 0.00 0.00 0.00 1.52
53 54 2.747989 TGTCGCCCGTATGCAATTTTTA 59.252 40.909 0.00 0.00 0.00 1.52
54 55 1.542030 TGTCGCCCGTATGCAATTTTT 59.458 42.857 0.00 0.00 0.00 1.94
55 56 1.135517 GTGTCGCCCGTATGCAATTTT 60.136 47.619 0.00 0.00 0.00 1.82
56 57 0.450184 GTGTCGCCCGTATGCAATTT 59.550 50.000 0.00 0.00 0.00 1.82
57 58 1.701545 CGTGTCGCCCGTATGCAATT 61.702 55.000 0.00 0.00 0.00 2.32
58 59 2.171079 CGTGTCGCCCGTATGCAAT 61.171 57.895 0.00 0.00 0.00 3.56
59 60 2.566057 ATCGTGTCGCCCGTATGCAA 62.566 55.000 0.00 0.00 0.00 4.08
60 61 1.726533 TATCGTGTCGCCCGTATGCA 61.727 55.000 0.00 0.00 0.00 3.96
61 62 1.008194 TATCGTGTCGCCCGTATGC 60.008 57.895 0.00 0.00 0.00 3.14
62 63 0.309922 AGTATCGTGTCGCCCGTATG 59.690 55.000 0.00 0.00 0.00 2.39
63 64 1.802960 CTAGTATCGTGTCGCCCGTAT 59.197 52.381 0.00 0.00 0.00 3.06
64 65 1.220529 CTAGTATCGTGTCGCCCGTA 58.779 55.000 0.00 0.00 0.00 4.02
65 66 2.020131 CTAGTATCGTGTCGCCCGT 58.980 57.895 0.00 0.00 0.00 5.28
66 67 1.370172 GCTAGTATCGTGTCGCCCG 60.370 63.158 0.00 0.00 0.00 6.13
67 68 1.007618 GGCTAGTATCGTGTCGCCC 60.008 63.158 0.00 0.00 0.00 6.13
68 69 0.040246 GAGGCTAGTATCGTGTCGCC 60.040 60.000 0.00 0.00 37.80 5.54
69 70 0.040246 GGAGGCTAGTATCGTGTCGC 60.040 60.000 0.00 0.00 0.00 5.19
70 71 0.235144 CGGAGGCTAGTATCGTGTCG 59.765 60.000 0.00 0.00 0.00 4.35
71 72 0.040246 GCGGAGGCTAGTATCGTGTC 60.040 60.000 0.00 0.00 35.83 3.67
72 73 1.783031 CGCGGAGGCTAGTATCGTGT 61.783 60.000 0.00 0.00 36.88 4.49
73 74 1.082038 CGCGGAGGCTAGTATCGTG 60.082 63.158 0.00 0.00 36.88 4.35
74 75 1.099879 AACGCGGAGGCTAGTATCGT 61.100 55.000 12.47 0.00 36.88 3.73
75 76 0.660595 CAACGCGGAGGCTAGTATCG 60.661 60.000 12.47 0.00 36.88 2.92
76 77 0.940047 GCAACGCGGAGGCTAGTATC 60.940 60.000 12.47 0.00 36.88 2.24
77 78 1.067582 GCAACGCGGAGGCTAGTAT 59.932 57.895 12.47 0.00 36.88 2.12
78 79 2.493030 GCAACGCGGAGGCTAGTA 59.507 61.111 12.47 0.00 36.88 1.82
89 90 1.786928 GCAGTGATCTAAACGCAACGC 60.787 52.381 0.00 0.00 0.00 4.84
90 91 1.726791 AGCAGTGATCTAAACGCAACG 59.273 47.619 0.00 0.00 0.00 4.10
91 92 3.678072 TGTAGCAGTGATCTAAACGCAAC 59.322 43.478 0.00 0.00 0.00 4.17
92 93 3.920446 TGTAGCAGTGATCTAAACGCAA 58.080 40.909 0.00 0.00 0.00 4.85
93 94 3.192633 TCTGTAGCAGTGATCTAAACGCA 59.807 43.478 0.00 0.00 32.61 5.24
94 95 3.770666 TCTGTAGCAGTGATCTAAACGC 58.229 45.455 0.00 0.00 32.61 4.84
95 96 4.355437 CCTCTGTAGCAGTGATCTAAACG 58.645 47.826 0.00 0.00 32.61 3.60
96 97 4.402793 TCCCTCTGTAGCAGTGATCTAAAC 59.597 45.833 0.00 0.00 32.61 2.01
97 98 4.610333 TCCCTCTGTAGCAGTGATCTAAA 58.390 43.478 0.00 0.00 32.61 1.85
98 99 4.211125 CTCCCTCTGTAGCAGTGATCTAA 58.789 47.826 0.00 0.00 32.61 2.10
99 100 3.203263 ACTCCCTCTGTAGCAGTGATCTA 59.797 47.826 0.00 0.00 32.61 1.98
100 101 2.024464 ACTCCCTCTGTAGCAGTGATCT 60.024 50.000 0.00 0.00 32.61 2.75
101 102 2.383855 ACTCCCTCTGTAGCAGTGATC 58.616 52.381 0.00 0.00 32.61 2.92
102 103 2.541233 ACTCCCTCTGTAGCAGTGAT 57.459 50.000 0.00 0.00 32.61 3.06
103 104 3.451402 TTACTCCCTCTGTAGCAGTGA 57.549 47.619 0.00 0.00 32.61 3.41
104 105 5.593010 GTTATTACTCCCTCTGTAGCAGTG 58.407 45.833 0.00 0.00 32.61 3.66
105 106 4.338682 CGTTATTACTCCCTCTGTAGCAGT 59.661 45.833 0.00 0.00 32.61 4.40
106 107 4.338682 ACGTTATTACTCCCTCTGTAGCAG 59.661 45.833 0.00 0.00 0.00 4.24
107 108 4.097437 CACGTTATTACTCCCTCTGTAGCA 59.903 45.833 0.00 0.00 0.00 3.49
108 109 4.608951 CACGTTATTACTCCCTCTGTAGC 58.391 47.826 0.00 0.00 0.00 3.58
109 110 4.608951 GCACGTTATTACTCCCTCTGTAG 58.391 47.826 0.00 0.00 0.00 2.74
110 111 3.065786 CGCACGTTATTACTCCCTCTGTA 59.934 47.826 0.00 0.00 0.00 2.74
111 112 2.159282 CGCACGTTATTACTCCCTCTGT 60.159 50.000 0.00 0.00 0.00 3.41
112 113 2.159282 ACGCACGTTATTACTCCCTCTG 60.159 50.000 0.00 0.00 0.00 3.35
113 114 2.097825 ACGCACGTTATTACTCCCTCT 58.902 47.619 0.00 0.00 0.00 3.69
114 115 2.457970 GACGCACGTTATTACTCCCTC 58.542 52.381 0.00 0.00 0.00 4.30
115 116 1.135721 GGACGCACGTTATTACTCCCT 59.864 52.381 0.00 0.00 0.00 4.20
116 117 1.135024 TGGACGCACGTTATTACTCCC 60.135 52.381 0.00 0.00 0.00 4.30
117 118 2.282701 TGGACGCACGTTATTACTCC 57.717 50.000 0.00 0.00 0.00 3.85
118 119 2.538449 CCATGGACGCACGTTATTACTC 59.462 50.000 5.56 0.00 0.00 2.59
124 125 1.739929 CAGCCATGGACGCACGTTA 60.740 57.895 18.40 0.00 0.00 3.18
167 169 4.429854 TTTTGGTCATTTTGAAAGGGGG 57.570 40.909 0.00 0.00 0.00 5.40
200 202 5.358298 ACTTCTGCCAAAGACGAATTAAC 57.642 39.130 0.00 0.00 33.46 2.01
231 236 3.913763 CACTTGTTTTGTATGCGTGATGG 59.086 43.478 0.00 0.00 0.00 3.51
234 239 2.616376 AGCACTTGTTTTGTATGCGTGA 59.384 40.909 0.00 0.00 41.23 4.35
235 240 2.998772 AGCACTTGTTTTGTATGCGTG 58.001 42.857 0.00 0.00 41.23 5.34
236 241 3.550030 GGAAGCACTTGTTTTGTATGCGT 60.550 43.478 0.00 0.00 41.23 5.24
237 242 2.979813 GGAAGCACTTGTTTTGTATGCG 59.020 45.455 0.00 0.00 41.23 4.73
238 243 4.229876 GAGGAAGCACTTGTTTTGTATGC 58.770 43.478 0.00 0.00 36.52 3.14
285 290 2.112198 TTTCCATGTCGATGCGCCC 61.112 57.895 4.18 0.00 0.00 6.13
287 292 1.062525 GGTTTCCATGTCGATGCGC 59.937 57.895 0.00 0.00 0.00 6.09
316 1969 7.525688 TTTTATTGACGTGTTCATTTTGCAA 57.474 28.000 0.00 0.00 32.84 4.08
319 1972 8.759641 TCCATTTTTATTGACGTGTTCATTTTG 58.240 29.630 0.00 0.00 32.84 2.44
324 1977 8.759641 CATTTTCCATTTTTATTGACGTGTTCA 58.240 29.630 0.00 0.00 0.00 3.18
336 1992 5.402867 GTCGCGTTTCCATTTTCCATTTTTA 59.597 36.000 5.77 0.00 0.00 1.52
672 2735 0.034186 TGTGTGATTGGCTGGGATCC 60.034 55.000 1.92 1.92 0.00 3.36
678 2741 0.594602 CACTGGTGTGTGATTGGCTG 59.405 55.000 0.00 0.00 40.12 4.85
688 2751 2.280797 CGGGGTGACACTGGTGTG 60.281 66.667 11.28 0.00 45.05 3.82
712 2775 1.591703 GAGATCGTGTCTGTGGGCA 59.408 57.895 0.00 0.00 37.29 5.36
746 2809 2.241880 CCGACGTGGACGCTGTTTT 61.242 57.895 0.00 0.00 44.43 2.43
1282 3368 2.360980 CTCTCCTCCCCGACCACT 59.639 66.667 0.00 0.00 0.00 4.00
1929 4032 1.525941 TCGATCACGATACGCCCATA 58.474 50.000 0.00 0.00 43.81 2.74
1984 4087 9.618890 AAGCAATACAATCAGTAATCTGTACAT 57.381 29.630 0.00 0.00 41.91 2.29
2045 4151 4.755123 CACCGAACCAAGAACAAGTAGAAT 59.245 41.667 0.00 0.00 0.00 2.40
2050 4156 1.021968 GCACCGAACCAAGAACAAGT 58.978 50.000 0.00 0.00 0.00 3.16
2086 4200 4.820897 ACTGAGACGCATCAATCAAGTAA 58.179 39.130 0.00 0.00 0.00 2.24
2087 4201 4.456280 ACTGAGACGCATCAATCAAGTA 57.544 40.909 0.00 0.00 0.00 2.24
2088 4202 3.325293 ACTGAGACGCATCAATCAAGT 57.675 42.857 0.00 0.00 0.00 3.16
2106 4220 4.067896 GTTCGATCATCCATGGCATAACT 58.932 43.478 6.96 0.00 0.00 2.24
2128 4242 1.920051 CCGTCGTGATCGCATTCTG 59.080 57.895 7.12 0.00 36.96 3.02
2129 4243 1.878522 GCCGTCGTGATCGCATTCT 60.879 57.895 7.12 0.00 36.96 2.40
2213 4327 0.817654 TACTCGAGGAGACGTACCGA 59.182 55.000 18.41 0.00 33.32 4.69
2242 4356 5.028549 TCTTCATCAGCAAATCCTACTCC 57.971 43.478 0.00 0.00 0.00 3.85
2253 4367 2.629617 TGTCTCACACTCTTCATCAGCA 59.370 45.455 0.00 0.00 0.00 4.41
2255 4369 9.591792 TTAATTATGTCTCACACTCTTCATCAG 57.408 33.333 0.00 0.00 0.00 2.90
2277 4396 2.102070 TCCACGTTCGTGCCATTAAT 57.898 45.000 18.14 0.00 35.03 1.40
2287 4406 3.496131 CCCGGCAATCCACGTTCG 61.496 66.667 0.00 0.00 0.00 3.95
2312 4431 2.289002 GCTGTAGCATGAAAAGGATCCG 59.711 50.000 5.98 0.00 41.59 4.18
2323 4442 1.346197 CTGCGAACGCTGTAGCATG 59.654 57.895 19.32 0.00 42.21 4.06
2324 4443 3.786101 CTGCGAACGCTGTAGCAT 58.214 55.556 19.32 0.00 42.21 3.79
2340 4459 3.130160 GACCGGACGCGACCTACT 61.130 66.667 24.38 7.12 0.00 2.57
2342 4461 4.720902 TGGACCGGACGCGACCTA 62.721 66.667 24.38 3.98 0.00 3.08
2381 4500 7.011950 TGTTTTTGAGAAGTGTCGTAATCATGT 59.988 33.333 0.00 0.00 0.00 3.21
2382 4501 7.351981 TGTTTTTGAGAAGTGTCGTAATCATG 58.648 34.615 0.00 0.00 0.00 3.07
2383 4502 7.490962 TGTTTTTGAGAAGTGTCGTAATCAT 57.509 32.000 0.00 0.00 0.00 2.45
2384 4503 6.912203 TGTTTTTGAGAAGTGTCGTAATCA 57.088 33.333 0.00 0.00 0.00 2.57
2385 4504 7.572759 TCATGTTTTTGAGAAGTGTCGTAATC 58.427 34.615 0.00 0.00 0.00 1.75
2386 4505 7.490962 TCATGTTTTTGAGAAGTGTCGTAAT 57.509 32.000 0.00 0.00 0.00 1.89
2387 4506 6.912203 TCATGTTTTTGAGAAGTGTCGTAA 57.088 33.333 0.00 0.00 0.00 3.18
2388 4507 7.490962 AATCATGTTTTTGAGAAGTGTCGTA 57.509 32.000 0.00 0.00 0.00 3.43
2389 4508 6.377327 AATCATGTTTTTGAGAAGTGTCGT 57.623 33.333 0.00 0.00 0.00 4.34
2390 4509 7.576236 ACTAATCATGTTTTTGAGAAGTGTCG 58.424 34.615 0.00 0.00 0.00 4.35
2407 4526 9.866655 TGCCCTAATCAATTTCTAACTAATCAT 57.133 29.630 0.00 0.00 0.00 2.45
2408 4527 9.866655 ATGCCCTAATCAATTTCTAACTAATCA 57.133 29.630 0.00 0.00 0.00 2.57
2412 4531 9.920946 AGAAATGCCCTAATCAATTTCTAACTA 57.079 29.630 7.52 0.00 36.82 2.24
2413 4532 8.829373 AGAAATGCCCTAATCAATTTCTAACT 57.171 30.769 7.52 0.00 36.82 2.24
2416 4535 9.920946 AGTTAGAAATGCCCTAATCAATTTCTA 57.079 29.630 10.96 10.96 38.69 2.10
2417 4536 8.689972 CAGTTAGAAATGCCCTAATCAATTTCT 58.310 33.333 12.56 12.56 40.25 2.52
2418 4537 8.686334 TCAGTTAGAAATGCCCTAATCAATTTC 58.314 33.333 0.00 0.00 0.00 2.17
2419 4538 8.593945 TCAGTTAGAAATGCCCTAATCAATTT 57.406 30.769 0.00 0.00 0.00 1.82
2420 4539 8.773033 ATCAGTTAGAAATGCCCTAATCAATT 57.227 30.769 0.00 0.00 0.00 2.32
2421 4540 8.773033 AATCAGTTAGAAATGCCCTAATCAAT 57.227 30.769 0.00 0.00 0.00 2.57
2422 4541 8.593945 AAATCAGTTAGAAATGCCCTAATCAA 57.406 30.769 0.00 0.00 0.00 2.57
2423 4542 7.285401 GGAAATCAGTTAGAAATGCCCTAATCA 59.715 37.037 0.00 0.00 0.00 2.57
2424 4543 7.285401 TGGAAATCAGTTAGAAATGCCCTAATC 59.715 37.037 0.00 0.00 0.00 1.75
2425 4544 7.125391 TGGAAATCAGTTAGAAATGCCCTAAT 58.875 34.615 0.00 0.00 0.00 1.73
2426 4545 6.489603 TGGAAATCAGTTAGAAATGCCCTAA 58.510 36.000 0.00 0.00 0.00 2.69
2427 4546 6.073447 TGGAAATCAGTTAGAAATGCCCTA 57.927 37.500 0.00 0.00 0.00 3.53
2428 4547 4.934356 TGGAAATCAGTTAGAAATGCCCT 58.066 39.130 0.00 0.00 0.00 5.19
2429 4548 5.659440 TTGGAAATCAGTTAGAAATGCCC 57.341 39.130 0.00 0.00 0.00 5.36
2430 4549 7.706607 GGTTATTGGAAATCAGTTAGAAATGCC 59.293 37.037 0.00 0.00 0.00 4.40
2431 4550 7.432252 CGGTTATTGGAAATCAGTTAGAAATGC 59.568 37.037 0.00 0.00 0.00 3.56
2432 4551 7.915397 CCGGTTATTGGAAATCAGTTAGAAATG 59.085 37.037 0.00 0.00 0.00 2.32
2433 4552 7.614192 ACCGGTTATTGGAAATCAGTTAGAAAT 59.386 33.333 0.00 0.00 0.00 2.17
2434 4553 6.943718 ACCGGTTATTGGAAATCAGTTAGAAA 59.056 34.615 0.00 0.00 0.00 2.52
2435 4554 6.478129 ACCGGTTATTGGAAATCAGTTAGAA 58.522 36.000 0.00 0.00 0.00 2.10
2436 4555 6.057321 ACCGGTTATTGGAAATCAGTTAGA 57.943 37.500 0.00 0.00 0.00 2.10
2437 4556 6.753107 AACCGGTTATTGGAAATCAGTTAG 57.247 37.500 20.78 0.00 0.00 2.34
2438 4557 7.622713 TCTAACCGGTTATTGGAAATCAGTTA 58.377 34.615 26.70 1.23 0.00 2.24
2439 4558 6.478129 TCTAACCGGTTATTGGAAATCAGTT 58.522 36.000 26.70 0.00 0.00 3.16
2440 4559 6.057321 TCTAACCGGTTATTGGAAATCAGT 57.943 37.500 26.70 0.00 0.00 3.41
2441 4560 5.527582 CCTCTAACCGGTTATTGGAAATCAG 59.472 44.000 28.06 16.55 0.00 2.90
2442 4561 5.190132 TCCTCTAACCGGTTATTGGAAATCA 59.810 40.000 30.28 16.98 0.00 2.57
2443 4562 5.677567 TCCTCTAACCGGTTATTGGAAATC 58.322 41.667 30.28 0.00 0.00 2.17
2444 4563 5.427481 TCTCCTCTAACCGGTTATTGGAAAT 59.573 40.000 31.02 11.15 31.15 2.17
2445 4564 4.778958 TCTCCTCTAACCGGTTATTGGAAA 59.221 41.667 31.02 23.48 31.15 3.13
2446 4565 4.161001 GTCTCCTCTAACCGGTTATTGGAA 59.839 45.833 31.02 23.56 31.15 3.53
2447 4566 3.703052 GTCTCCTCTAACCGGTTATTGGA 59.297 47.826 30.22 30.22 0.00 3.53
2448 4567 3.181468 GGTCTCCTCTAACCGGTTATTGG 60.181 52.174 26.70 26.86 0.00 3.16
2449 4568 4.056092 GGTCTCCTCTAACCGGTTATTG 57.944 50.000 26.70 20.27 0.00 1.90
2457 4576 0.822811 GGTTCCGGTCTCCTCTAACC 59.177 60.000 0.00 0.81 0.00 2.85
2458 4577 1.849977 AGGTTCCGGTCTCCTCTAAC 58.150 55.000 0.00 0.00 0.00 2.34
2459 4578 3.359950 GTTAGGTTCCGGTCTCCTCTAA 58.640 50.000 15.49 7.79 33.34 2.10
2460 4579 2.357569 GGTTAGGTTCCGGTCTCCTCTA 60.358 54.545 15.49 5.84 33.34 2.43
2461 4580 1.619160 GGTTAGGTTCCGGTCTCCTCT 60.619 57.143 15.49 3.70 33.34 3.69
2462 4581 0.822811 GGTTAGGTTCCGGTCTCCTC 59.177 60.000 15.49 5.64 33.34 3.71
2463 4582 0.969409 CGGTTAGGTTCCGGTCTCCT 60.969 60.000 16.08 16.08 43.68 3.69
2464 4583 0.967380 TCGGTTAGGTTCCGGTCTCC 60.967 60.000 0.00 2.54 46.82 3.71
2465 4584 1.109609 ATCGGTTAGGTTCCGGTCTC 58.890 55.000 0.00 0.00 46.82 3.36
2466 4585 3.294904 ATCGGTTAGGTTCCGGTCT 57.705 52.632 0.00 0.25 46.82 3.85
2468 4587 1.811860 CGATCGGTTAGGTTCCGGT 59.188 57.895 7.38 0.00 46.82 5.28
2469 4588 1.590792 GCGATCGGTTAGGTTCCGG 60.591 63.158 18.30 0.00 46.82 5.14
2471 4590 0.175073 ACAGCGATCGGTTAGGTTCC 59.825 55.000 18.67 0.00 0.00 3.62
2472 4591 2.357009 TCTACAGCGATCGGTTAGGTTC 59.643 50.000 18.67 0.00 0.00 3.62
2473 4592 2.372264 TCTACAGCGATCGGTTAGGTT 58.628 47.619 18.67 2.39 0.00 3.50
2474 4593 2.048444 TCTACAGCGATCGGTTAGGT 57.952 50.000 18.67 15.02 0.00 3.08
2475 4594 2.552743 TGATCTACAGCGATCGGTTAGG 59.447 50.000 18.67 9.38 42.10 2.69
2476 4595 3.898517 TGATCTACAGCGATCGGTTAG 57.101 47.619 18.67 19.96 42.10 2.34
2477 4596 5.001874 ACTATGATCTACAGCGATCGGTTA 58.998 41.667 18.67 12.16 42.10 2.85
2478 4597 3.821600 ACTATGATCTACAGCGATCGGTT 59.178 43.478 18.67 11.65 42.10 4.44
2479 4598 3.189495 CACTATGATCTACAGCGATCGGT 59.811 47.826 15.21 15.21 42.10 4.69
2480 4599 3.426829 CCACTATGATCTACAGCGATCGG 60.427 52.174 18.30 3.26 42.10 4.18
2481 4600 3.437049 TCCACTATGATCTACAGCGATCG 59.563 47.826 11.69 11.69 42.10 3.69
2482 4601 5.378292 TTCCACTATGATCTACAGCGATC 57.622 43.478 0.00 0.00 40.13 3.69
2483 4602 5.991933 ATTCCACTATGATCTACAGCGAT 57.008 39.130 0.00 0.00 0.00 4.58
2484 4603 8.575649 TTATATTCCACTATGATCTACAGCGA 57.424 34.615 0.00 0.00 0.00 4.93
2485 4604 9.639601 TTTTATATTCCACTATGATCTACAGCG 57.360 33.333 0.00 0.00 0.00 5.18
2497 4616 8.842280 CGGCCAAGTAAATTTTATATTCCACTA 58.158 33.333 2.24 0.00 0.00 2.74
2498 4617 7.683463 GCGGCCAAGTAAATTTTATATTCCACT 60.683 37.037 2.24 0.00 0.00 4.00
2499 4618 6.419710 GCGGCCAAGTAAATTTTATATTCCAC 59.580 38.462 2.24 0.00 0.00 4.02
2500 4619 6.461788 GGCGGCCAAGTAAATTTTATATTCCA 60.462 38.462 15.62 0.00 0.00 3.53
2501 4620 5.924254 GGCGGCCAAGTAAATTTTATATTCC 59.076 40.000 15.62 0.00 0.00 3.01
2502 4621 5.627780 CGGCGGCCAAGTAAATTTTATATTC 59.372 40.000 20.71 0.00 0.00 1.75
2503 4622 5.525199 CGGCGGCCAAGTAAATTTTATATT 58.475 37.500 20.71 0.00 0.00 1.28
2504 4623 4.557895 GCGGCGGCCAAGTAAATTTTATAT 60.558 41.667 20.71 0.00 0.00 0.86
2505 4624 3.243134 GCGGCGGCCAAGTAAATTTTATA 60.243 43.478 20.71 0.00 0.00 0.98
2506 4625 2.480587 GCGGCGGCCAAGTAAATTTTAT 60.481 45.455 20.71 0.00 0.00 1.40
2507 4626 1.135344 GCGGCGGCCAAGTAAATTTTA 60.135 47.619 20.71 0.00 0.00 1.52
2508 4627 0.389296 GCGGCGGCCAAGTAAATTTT 60.389 50.000 20.71 0.00 0.00 1.82
2509 4628 1.214325 GCGGCGGCCAAGTAAATTT 59.786 52.632 20.71 0.00 0.00 1.82
2510 4629 1.528292 TTGCGGCGGCCAAGTAAATT 61.528 50.000 20.71 0.00 38.85 1.82
2511 4630 1.528292 TTTGCGGCGGCCAAGTAAAT 61.528 50.000 20.71 0.00 38.85 1.40
2512 4631 1.528292 ATTTGCGGCGGCCAAGTAAA 61.528 50.000 20.71 15.21 38.85 2.01
2513 4632 1.928706 GATTTGCGGCGGCCAAGTAA 61.929 55.000 20.71 6.58 38.85 2.24
2514 4633 2.360600 ATTTGCGGCGGCCAAGTA 60.361 55.556 20.71 0.00 38.85 2.24
2515 4634 3.747976 GATTTGCGGCGGCCAAGT 61.748 61.111 20.71 3.10 38.85 3.16
2516 4635 2.872337 GAAGATTTGCGGCGGCCAAG 62.872 60.000 20.71 4.52 38.85 3.61
2517 4636 2.988684 AAGATTTGCGGCGGCCAA 60.989 55.556 20.71 9.60 38.85 4.52
2518 4637 3.439540 GAAGATTTGCGGCGGCCA 61.440 61.111 20.71 0.00 38.85 5.36
2519 4638 4.193334 GGAAGATTTGCGGCGGCC 62.193 66.667 14.25 9.54 38.85 6.13
2520 4639 1.166531 ATAGGAAGATTTGCGGCGGC 61.167 55.000 9.78 9.68 40.52 6.53
2521 4640 2.163818 TATAGGAAGATTTGCGGCGG 57.836 50.000 9.78 0.00 0.00 6.13
2522 4641 4.749245 AAATATAGGAAGATTTGCGGCG 57.251 40.909 0.51 0.51 0.00 6.46
2523 4642 8.296713 TGAAATAAATATAGGAAGATTTGCGGC 58.703 33.333 0.00 0.00 29.63 6.53
2530 4649 9.307121 CGAGCGATGAAATAAATATAGGAAGAT 57.693 33.333 0.00 0.00 0.00 2.40
2531 4650 7.759886 CCGAGCGATGAAATAAATATAGGAAGA 59.240 37.037 0.00 0.00 0.00 2.87
2532 4651 7.464710 GCCGAGCGATGAAATAAATATAGGAAG 60.465 40.741 0.00 0.00 0.00 3.46
2533 4652 6.312918 GCCGAGCGATGAAATAAATATAGGAA 59.687 38.462 0.00 0.00 0.00 3.36
2534 4653 5.810587 GCCGAGCGATGAAATAAATATAGGA 59.189 40.000 0.00 0.00 0.00 2.94
2535 4654 6.037423 GCCGAGCGATGAAATAAATATAGG 57.963 41.667 0.00 0.00 0.00 2.57
2556 4675 0.656259 GATTTTCTTACTCGGCCGCC 59.344 55.000 23.51 0.00 0.00 6.13
2557 4676 1.593469 GAGATTTTCTTACTCGGCCGC 59.407 52.381 23.51 0.73 0.00 6.53
2558 4677 2.159085 AGGAGATTTTCTTACTCGGCCG 60.159 50.000 22.12 22.12 0.00 6.13
2559 4678 3.459145 GAGGAGATTTTCTTACTCGGCC 58.541 50.000 0.00 0.00 0.00 6.13
2560 4679 3.133183 AGGAGGAGATTTTCTTACTCGGC 59.867 47.826 0.00 0.00 34.01 5.54
2561 4680 6.492087 AGATAGGAGGAGATTTTCTTACTCGG 59.508 42.308 0.00 0.00 34.01 4.63
2562 4681 7.519032 AGATAGGAGGAGATTTTCTTACTCG 57.481 40.000 0.00 0.00 34.01 4.18
2563 4682 8.364894 GGAAGATAGGAGGAGATTTTCTTACTC 58.635 40.741 0.00 0.00 33.09 2.59
2564 4683 8.071229 AGGAAGATAGGAGGAGATTTTCTTACT 58.929 37.037 0.00 0.00 30.02 2.24
2565 4684 8.257602 AGGAAGATAGGAGGAGATTTTCTTAC 57.742 38.462 0.00 0.00 0.00 2.34
2566 4685 8.862091 AAGGAAGATAGGAGGAGATTTTCTTA 57.138 34.615 0.00 0.00 0.00 2.10
2567 4686 7.763564 AAGGAAGATAGGAGGAGATTTTCTT 57.236 36.000 0.00 0.00 0.00 2.52
2568 4687 7.627293 AGAAAGGAAGATAGGAGGAGATTTTCT 59.373 37.037 0.00 0.00 0.00 2.52
2569 4688 7.801104 AGAAAGGAAGATAGGAGGAGATTTTC 58.199 38.462 0.00 0.00 0.00 2.29
2570 4689 7.627293 AGAGAAAGGAAGATAGGAGGAGATTTT 59.373 37.037 0.00 0.00 0.00 1.82
2571 4690 7.071071 CAGAGAAAGGAAGATAGGAGGAGATTT 59.929 40.741 0.00 0.00 0.00 2.17
2572 4691 6.554605 CAGAGAAAGGAAGATAGGAGGAGATT 59.445 42.308 0.00 0.00 0.00 2.40
2573 4692 6.077322 CAGAGAAAGGAAGATAGGAGGAGAT 58.923 44.000 0.00 0.00 0.00 2.75
2574 4693 5.454062 CAGAGAAAGGAAGATAGGAGGAGA 58.546 45.833 0.00 0.00 0.00 3.71
2575 4694 4.039124 GCAGAGAAAGGAAGATAGGAGGAG 59.961 50.000 0.00 0.00 0.00 3.69
2576 4695 3.964031 GCAGAGAAAGGAAGATAGGAGGA 59.036 47.826 0.00 0.00 0.00 3.71
2577 4696 3.070878 GGCAGAGAAAGGAAGATAGGAGG 59.929 52.174 0.00 0.00 0.00 4.30
2578 4697 3.966665 AGGCAGAGAAAGGAAGATAGGAG 59.033 47.826 0.00 0.00 0.00 3.69
2579 4698 3.964031 GAGGCAGAGAAAGGAAGATAGGA 59.036 47.826 0.00 0.00 0.00 2.94
2580 4699 3.070878 GGAGGCAGAGAAAGGAAGATAGG 59.929 52.174 0.00 0.00 0.00 2.57
2581 4700 3.966665 AGGAGGCAGAGAAAGGAAGATAG 59.033 47.826 0.00 0.00 0.00 2.08
2582 4701 3.964031 GAGGAGGCAGAGAAAGGAAGATA 59.036 47.826 0.00 0.00 0.00 1.98
2583 4702 2.771372 GAGGAGGCAGAGAAAGGAAGAT 59.229 50.000 0.00 0.00 0.00 2.40
2584 4703 2.183679 GAGGAGGCAGAGAAAGGAAGA 58.816 52.381 0.00 0.00 0.00 2.87
2585 4704 2.187100 AGAGGAGGCAGAGAAAGGAAG 58.813 52.381 0.00 0.00 0.00 3.46
2586 4705 2.334006 AGAGGAGGCAGAGAAAGGAA 57.666 50.000 0.00 0.00 0.00 3.36
2587 4706 2.183679 GAAGAGGAGGCAGAGAAAGGA 58.816 52.381 0.00 0.00 0.00 3.36
2588 4707 2.187100 AGAAGAGGAGGCAGAGAAAGG 58.813 52.381 0.00 0.00 0.00 3.11
2589 4708 3.369366 GGAAGAAGAGGAGGCAGAGAAAG 60.369 52.174 0.00 0.00 0.00 2.62
2590 4709 2.569404 GGAAGAAGAGGAGGCAGAGAAA 59.431 50.000 0.00 0.00 0.00 2.52
2591 4710 2.183679 GGAAGAAGAGGAGGCAGAGAA 58.816 52.381 0.00 0.00 0.00 2.87
2592 4711 1.621072 GGGAAGAAGAGGAGGCAGAGA 60.621 57.143 0.00 0.00 0.00 3.10
2593 4712 0.829990 GGGAAGAAGAGGAGGCAGAG 59.170 60.000 0.00 0.00 0.00 3.35
2594 4713 0.618968 GGGGAAGAAGAGGAGGCAGA 60.619 60.000 0.00 0.00 0.00 4.26
2595 4714 0.620121 AGGGGAAGAAGAGGAGGCAG 60.620 60.000 0.00 0.00 0.00 4.85
2596 4715 0.618968 GAGGGGAAGAAGAGGAGGCA 60.619 60.000 0.00 0.00 0.00 4.75
2597 4716 0.326143 AGAGGGGAAGAAGAGGAGGC 60.326 60.000 0.00 0.00 0.00 4.70
2598 4717 1.691163 GGAGAGGGGAAGAAGAGGAGG 60.691 61.905 0.00 0.00 0.00 4.30
2599 4718 1.691163 GGGAGAGGGGAAGAAGAGGAG 60.691 61.905 0.00 0.00 0.00 3.69
2600 4719 0.340208 GGGAGAGGGGAAGAAGAGGA 59.660 60.000 0.00 0.00 0.00 3.71
2601 4720 0.341609 AGGGAGAGGGGAAGAAGAGG 59.658 60.000 0.00 0.00 0.00 3.69
2602 4721 1.494960 CAGGGAGAGGGGAAGAAGAG 58.505 60.000 0.00 0.00 0.00 2.85
2603 4722 0.618968 GCAGGGAGAGGGGAAGAAGA 60.619 60.000 0.00 0.00 0.00 2.87
2604 4723 0.620121 AGCAGGGAGAGGGGAAGAAG 60.620 60.000 0.00 0.00 0.00 2.85
2605 4724 0.911525 CAGCAGGGAGAGGGGAAGAA 60.912 60.000 0.00 0.00 0.00 2.52
2606 4725 1.306482 CAGCAGGGAGAGGGGAAGA 60.306 63.158 0.00 0.00 0.00 2.87
2607 4726 3.041469 GCAGCAGGGAGAGGGGAAG 62.041 68.421 0.00 0.00 0.00 3.46
2608 4727 3.011517 GCAGCAGGGAGAGGGGAA 61.012 66.667 0.00 0.00 0.00 3.97
2611 4730 3.795041 CTGGCAGCAGGGAGAGGG 61.795 72.222 0.00 0.00 0.00 4.30
2612 4731 4.486503 GCTGGCAGCAGGGAGAGG 62.487 72.222 33.33 0.00 41.89 3.69
2622 4741 3.390521 TAGGGGACGTGCTGGCAG 61.391 66.667 10.94 10.94 0.00 4.85
2623 4742 3.702048 GTAGGGGACGTGCTGGCA 61.702 66.667 7.11 0.00 0.00 4.92
2624 4743 4.468689 GGTAGGGGACGTGCTGGC 62.469 72.222 7.11 0.00 0.00 4.85
2625 4744 3.782443 GGGTAGGGGACGTGCTGG 61.782 72.222 7.11 0.00 0.00 4.85
2626 4745 2.240162 GAAGGGTAGGGGACGTGCTG 62.240 65.000 7.11 0.00 0.00 4.41
2627 4746 1.988406 GAAGGGTAGGGGACGTGCT 60.988 63.158 7.11 0.00 0.00 4.40
2628 4747 2.582978 GAAGGGTAGGGGACGTGC 59.417 66.667 0.00 0.00 0.00 5.34
2629 4748 2.364780 GGGAAGGGTAGGGGACGTG 61.365 68.421 0.00 0.00 0.00 4.49
2630 4749 2.040114 GGGAAGGGTAGGGGACGT 59.960 66.667 0.00 0.00 0.00 4.34
2631 4750 1.614226 TTGGGAAGGGTAGGGGACG 60.614 63.158 0.00 0.00 0.00 4.79
2632 4751 0.549413 AGTTGGGAAGGGTAGGGGAC 60.549 60.000 0.00 0.00 0.00 4.46
2633 4752 0.549169 CAGTTGGGAAGGGTAGGGGA 60.549 60.000 0.00 0.00 0.00 4.81
2634 4753 1.999346 CAGTTGGGAAGGGTAGGGG 59.001 63.158 0.00 0.00 0.00 4.79
2635 4754 1.303282 GCAGTTGGGAAGGGTAGGG 59.697 63.158 0.00 0.00 0.00 3.53
2636 4755 1.303282 GGCAGTTGGGAAGGGTAGG 59.697 63.158 0.00 0.00 0.00 3.18
2637 4756 1.303282 GGGCAGTTGGGAAGGGTAG 59.697 63.158 0.00 0.00 0.00 3.18
2638 4757 2.235761 GGGGCAGTTGGGAAGGGTA 61.236 63.158 0.00 0.00 0.00 3.69
2639 4758 3.590574 GGGGCAGTTGGGAAGGGT 61.591 66.667 0.00 0.00 0.00 4.34
2640 4759 2.788210 GAAGGGGCAGTTGGGAAGGG 62.788 65.000 0.00 0.00 0.00 3.95
2641 4760 1.304464 GAAGGGGCAGTTGGGAAGG 60.304 63.158 0.00 0.00 0.00 3.46
2642 4761 0.322906 GAGAAGGGGCAGTTGGGAAG 60.323 60.000 0.00 0.00 0.00 3.46
2643 4762 0.772124 AGAGAAGGGGCAGTTGGGAA 60.772 55.000 0.00 0.00 0.00 3.97
2644 4763 0.772124 AAGAGAAGGGGCAGTTGGGA 60.772 55.000 0.00 0.00 0.00 4.37
2645 4764 0.322906 GAAGAGAAGGGGCAGTTGGG 60.323 60.000 0.00 0.00 0.00 4.12
2646 4765 0.322906 GGAAGAGAAGGGGCAGTTGG 60.323 60.000 0.00 0.00 0.00 3.77
2647 4766 0.322906 GGGAAGAGAAGGGGCAGTTG 60.323 60.000 0.00 0.00 0.00 3.16
2648 4767 0.772124 TGGGAAGAGAAGGGGCAGTT 60.772 55.000 0.00 0.00 0.00 3.16
2649 4768 0.772124 TTGGGAAGAGAAGGGGCAGT 60.772 55.000 0.00 0.00 0.00 4.40
2650 4769 0.627986 ATTGGGAAGAGAAGGGGCAG 59.372 55.000 0.00 0.00 0.00 4.85
2651 4770 0.332632 CATTGGGAAGAGAAGGGGCA 59.667 55.000 0.00 0.00 0.00 5.36
2652 4771 0.396278 CCATTGGGAAGAGAAGGGGC 60.396 60.000 0.00 0.00 35.59 5.80
2653 4772 0.396278 GCCATTGGGAAGAGAAGGGG 60.396 60.000 4.53 0.00 35.59 4.79
2654 4773 0.396278 GGCCATTGGGAAGAGAAGGG 60.396 60.000 4.53 0.00 35.59 3.95
2655 4774 0.749454 CGGCCATTGGGAAGAGAAGG 60.749 60.000 2.24 0.00 35.59 3.46
2656 4775 0.749454 CCGGCCATTGGGAAGAGAAG 60.749 60.000 2.24 0.00 35.59 2.85
2657 4776 1.204786 TCCGGCCATTGGGAAGAGAA 61.205 55.000 2.24 0.00 35.59 2.87
2658 4777 0.988145 ATCCGGCCATTGGGAAGAGA 60.988 55.000 2.24 0.00 35.60 3.10
2659 4778 0.820891 CATCCGGCCATTGGGAAGAG 60.821 60.000 2.24 0.00 35.60 2.85
2660 4779 1.227102 CATCCGGCCATTGGGAAGA 59.773 57.895 2.24 0.00 35.60 2.87
2661 4780 0.820891 CTCATCCGGCCATTGGGAAG 60.821 60.000 2.24 0.00 35.60 3.46
2662 4781 1.227102 CTCATCCGGCCATTGGGAA 59.773 57.895 2.24 0.00 35.60 3.97
2663 4782 2.756042 CCTCATCCGGCCATTGGGA 61.756 63.158 2.24 0.38 35.59 4.37
2664 4783 2.203394 CCTCATCCGGCCATTGGG 60.203 66.667 2.24 0.00 37.18 4.12
2665 4784 1.825191 CACCTCATCCGGCCATTGG 60.825 63.158 2.24 0.00 0.00 3.16
2666 4785 1.825191 CCACCTCATCCGGCCATTG 60.825 63.158 2.24 0.00 0.00 2.82
2667 4786 2.597340 CCACCTCATCCGGCCATT 59.403 61.111 2.24 0.00 0.00 3.16
2668 4787 4.195334 GCCACCTCATCCGGCCAT 62.195 66.667 2.24 0.00 40.07 4.40
2671 4790 4.864334 CCAGCCACCTCATCCGGC 62.864 72.222 0.00 0.00 46.62 6.13
2672 4791 3.083349 TCCAGCCACCTCATCCGG 61.083 66.667 0.00 0.00 0.00 5.14
2673 4792 2.503061 CTCCAGCCACCTCATCCG 59.497 66.667 0.00 0.00 0.00 4.18
2674 4793 1.977293 GACCTCCAGCCACCTCATCC 61.977 65.000 0.00 0.00 0.00 3.51
2675 4794 1.524482 GACCTCCAGCCACCTCATC 59.476 63.158 0.00 0.00 0.00 2.92
2676 4795 1.997874 GGACCTCCAGCCACCTCAT 60.998 63.158 0.00 0.00 35.64 2.90
2677 4796 2.607750 GGACCTCCAGCCACCTCA 60.608 66.667 0.00 0.00 35.64 3.86
2678 4797 3.403558 GGGACCTCCAGCCACCTC 61.404 72.222 0.00 0.00 37.91 3.85
2714 4833 4.477975 GACGACCCTCGAGCGTGG 62.478 72.222 19.06 14.81 43.74 4.94
2715 4834 4.813526 CGACGACCCTCGAGCGTG 62.814 72.222 19.06 9.10 43.74 5.34
2717 4836 4.517703 GACGACGACCCTCGAGCG 62.518 72.222 6.99 8.21 43.74 5.03
2718 4837 2.688794 AAGACGACGACCCTCGAGC 61.689 63.158 6.99 0.00 43.74 5.03
2719 4838 1.134901 CAAGACGACGACCCTCGAG 59.865 63.158 5.13 5.13 43.74 4.04
2720 4839 2.974489 GCAAGACGACGACCCTCGA 61.974 63.158 0.00 0.00 43.74 4.04
2721 4840 2.504244 GCAAGACGACGACCCTCG 60.504 66.667 0.00 0.00 46.93 4.63
2732 4851 3.567797 GAGGATGCGCCGCAAGAC 61.568 66.667 18.69 9.56 43.62 3.01
2762 4881 4.570663 GTGGGCGGATCGGACGAG 62.571 72.222 4.16 0.00 0.00 4.18
2769 4888 4.815108 GGTTGGGGTGGGCGGATC 62.815 72.222 0.00 0.00 0.00 3.36
2774 4893 4.376170 AATCGGGTTGGGGTGGGC 62.376 66.667 0.00 0.00 0.00 5.36
2775 4894 2.044352 GAATCGGGTTGGGGTGGG 60.044 66.667 0.00 0.00 0.00 4.61
2776 4895 2.437716 CGAATCGGGTTGGGGTGG 60.438 66.667 0.00 0.00 0.00 4.61
2777 4896 3.131478 GCGAATCGGGTTGGGGTG 61.131 66.667 4.35 0.00 0.00 4.61
2778 4897 4.419921 GGCGAATCGGGTTGGGGT 62.420 66.667 4.35 0.00 0.00 4.95
2780 4899 4.460683 TCGGCGAATCGGGTTGGG 62.461 66.667 7.35 0.00 0.00 4.12
2781 4900 3.192922 GTCGGCGAATCGGGTTGG 61.193 66.667 12.92 0.00 0.00 3.77
2782 4901 1.693083 GAAGTCGGCGAATCGGGTTG 61.693 60.000 12.92 0.00 0.00 3.77
2783 4902 1.447314 GAAGTCGGCGAATCGGGTT 60.447 57.895 12.92 0.00 0.00 4.11
2784 4903 2.183555 GAAGTCGGCGAATCGGGT 59.816 61.111 12.92 0.00 0.00 5.28
2785 4904 2.585247 GGAAGTCGGCGAATCGGG 60.585 66.667 12.92 0.00 0.00 5.14
2786 4905 2.585247 GGGAAGTCGGCGAATCGG 60.585 66.667 12.92 0.00 0.00 4.18
2787 4906 2.954868 CGGGAAGTCGGCGAATCG 60.955 66.667 12.92 6.88 0.00 3.34
2788 4907 3.262686 GCGGGAAGTCGGCGAATC 61.263 66.667 12.92 13.43 32.14 2.52
2789 4908 4.077184 TGCGGGAAGTCGGCGAAT 62.077 61.111 12.92 7.97 43.60 3.34
2790 4909 4.735132 CTGCGGGAAGTCGGCGAA 62.735 66.667 12.92 0.00 43.60 4.70
2794 4913 4.821589 GGAGCTGCGGGAAGTCGG 62.822 72.222 0.00 0.00 0.00 4.79
2795 4914 4.821589 GGGAGCTGCGGGAAGTCG 62.822 72.222 0.00 0.00 0.00 4.18
2796 4915 3.378399 GAGGGAGCTGCGGGAAGTC 62.378 68.421 0.00 0.00 0.00 3.01
2797 4916 3.394836 GAGGGAGCTGCGGGAAGT 61.395 66.667 0.00 0.00 0.00 3.01
2798 4917 4.168291 GGAGGGAGCTGCGGGAAG 62.168 72.222 0.00 0.00 0.00 3.46
2831 4950 3.885521 GGTAGGTCCTCCGCGACG 61.886 72.222 8.23 0.00 39.05 5.12
2832 4951 2.439883 AGGTAGGTCCTCCGCGAC 60.440 66.667 8.23 0.00 44.42 5.19
2840 4959 2.439883 AGACGCCGAGGTAGGTCC 60.440 66.667 0.00 0.00 0.00 4.46
2841 4960 1.748122 TCAGACGCCGAGGTAGGTC 60.748 63.158 0.00 0.00 0.00 3.85
2842 4961 2.045131 GTCAGACGCCGAGGTAGGT 61.045 63.158 0.00 0.00 0.00 3.08
2843 4962 1.384989 ATGTCAGACGCCGAGGTAGG 61.385 60.000 0.00 0.00 0.00 3.18
2844 4963 0.029567 GATGTCAGACGCCGAGGTAG 59.970 60.000 0.00 0.00 0.00 3.18
2845 4964 1.712018 CGATGTCAGACGCCGAGGTA 61.712 60.000 8.27 0.00 0.00 3.08
2846 4965 2.885861 GATGTCAGACGCCGAGGT 59.114 61.111 0.00 0.00 0.00 3.85
2847 4966 2.278206 CGATGTCAGACGCCGAGG 60.278 66.667 8.27 0.00 0.00 4.63
2853 4972 0.919300 CATGTCAGCGATGTCAGACG 59.081 55.000 6.75 0.00 33.83 4.18
2854 4973 1.284657 CCATGTCAGCGATGTCAGAC 58.715 55.000 6.75 0.00 0.00 3.51
2855 4974 0.897621 ACCATGTCAGCGATGTCAGA 59.102 50.000 6.75 0.00 0.00 3.27
2856 4975 1.395954 CAACCATGTCAGCGATGTCAG 59.604 52.381 6.75 0.00 0.00 3.51
2857 4976 1.441738 CAACCATGTCAGCGATGTCA 58.558 50.000 2.58 2.58 0.00 3.58
2858 4977 0.729116 CCAACCATGTCAGCGATGTC 59.271 55.000 0.00 0.00 0.00 3.06
2859 4978 0.036732 ACCAACCATGTCAGCGATGT 59.963 50.000 0.00 0.00 0.00 3.06
2860 4979 0.448990 CACCAACCATGTCAGCGATG 59.551 55.000 0.00 0.00 0.00 3.84
2861 4980 0.677731 CCACCAACCATGTCAGCGAT 60.678 55.000 0.00 0.00 0.00 4.58
2862 4981 1.302431 CCACCAACCATGTCAGCGA 60.302 57.895 0.00 0.00 0.00 4.93
2863 4982 1.300971 CTCCACCAACCATGTCAGCG 61.301 60.000 0.00 0.00 0.00 5.18
2864 4983 0.036732 TCTCCACCAACCATGTCAGC 59.963 55.000 0.00 0.00 0.00 4.26
2865 4984 2.026915 TGATCTCCACCAACCATGTCAG 60.027 50.000 0.00 0.00 0.00 3.51
2866 4985 1.984424 TGATCTCCACCAACCATGTCA 59.016 47.619 0.00 0.00 0.00 3.58
2867 4986 2.359900 GTGATCTCCACCAACCATGTC 58.640 52.381 0.00 0.00 39.86 3.06
2868 4987 2.496899 GTGATCTCCACCAACCATGT 57.503 50.000 0.00 0.00 39.86 3.21
2877 4996 0.970937 TCCTGGTCGGTGATCTCCAC 60.971 60.000 13.99 10.27 44.95 4.02
2878 4997 0.684479 CTCCTGGTCGGTGATCTCCA 60.684 60.000 13.99 4.73 0.00 3.86
2879 4998 0.395862 TCTCCTGGTCGGTGATCTCC 60.396 60.000 3.58 3.58 30.59 3.71
2880 4999 0.741915 GTCTCCTGGTCGGTGATCTC 59.258 60.000 0.00 0.00 37.59 2.75
2881 5000 0.684805 GGTCTCCTGGTCGGTGATCT 60.685 60.000 0.00 0.00 37.59 2.75
2882 5001 1.677637 GGGTCTCCTGGTCGGTGATC 61.678 65.000 0.00 0.00 37.59 2.92
2883 5002 1.686110 GGGTCTCCTGGTCGGTGAT 60.686 63.158 0.00 0.00 37.59 3.06
2884 5003 2.283676 GGGTCTCCTGGTCGGTGA 60.284 66.667 0.00 0.00 33.05 4.02
2885 5004 2.603473 TGGGTCTCCTGGTCGGTG 60.603 66.667 0.00 0.00 0.00 4.94
2886 5005 2.603776 GTGGGTCTCCTGGTCGGT 60.604 66.667 0.00 0.00 0.00 4.69
2887 5006 2.172483 CTTGTGGGTCTCCTGGTCGG 62.172 65.000 0.00 0.00 0.00 4.79
2888 5007 1.185618 TCTTGTGGGTCTCCTGGTCG 61.186 60.000 0.00 0.00 0.00 4.79
2889 5008 0.610687 CTCTTGTGGGTCTCCTGGTC 59.389 60.000 0.00 0.00 0.00 4.02
2890 5009 0.838122 CCTCTTGTGGGTCTCCTGGT 60.838 60.000 0.00 0.00 0.00 4.00
2891 5010 0.545309 TCCTCTTGTGGGTCTCCTGG 60.545 60.000 0.00 0.00 0.00 4.45
2892 5011 1.277557 CTTCCTCTTGTGGGTCTCCTG 59.722 57.143 0.00 0.00 0.00 3.86
2893 5012 1.132689 ACTTCCTCTTGTGGGTCTCCT 60.133 52.381 0.00 0.00 0.00 3.69
2894 5013 1.002544 CACTTCCTCTTGTGGGTCTCC 59.997 57.143 0.00 0.00 0.00 3.71
2895 5014 2.464157 CACTTCCTCTTGTGGGTCTC 57.536 55.000 0.00 0.00 0.00 3.36
2901 5020 0.320771 CCGACCCACTTCCTCTTGTG 60.321 60.000 0.00 0.00 0.00 3.33
2902 5021 1.481056 CCCGACCCACTTCCTCTTGT 61.481 60.000 0.00 0.00 0.00 3.16
2903 5022 1.296715 CCCGACCCACTTCCTCTTG 59.703 63.158 0.00 0.00 0.00 3.02
2904 5023 1.152096 ACCCGACCCACTTCCTCTT 60.152 57.895 0.00 0.00 0.00 2.85
2905 5024 1.609794 GACCCGACCCACTTCCTCT 60.610 63.158 0.00 0.00 0.00 3.69
2906 5025 2.979649 GACCCGACCCACTTCCTC 59.020 66.667 0.00 0.00 0.00 3.71
2907 5026 2.995574 CGACCCGACCCACTTCCT 60.996 66.667 0.00 0.00 0.00 3.36
2908 5027 2.776670 GAACGACCCGACCCACTTCC 62.777 65.000 0.00 0.00 0.00 3.46
2909 5028 1.373873 GAACGACCCGACCCACTTC 60.374 63.158 0.00 0.00 0.00 3.01
2910 5029 2.739132 GAACGACCCGACCCACTT 59.261 61.111 0.00 0.00 0.00 3.16
2911 5030 3.308705 GGAACGACCCGACCCACT 61.309 66.667 0.00 0.00 0.00 4.00
2912 5031 3.618750 TGGAACGACCCGACCCAC 61.619 66.667 0.00 0.00 38.00 4.61
2913 5032 3.618750 GTGGAACGACCCGACCCA 61.619 66.667 0.00 0.00 38.00 4.51
2914 5033 3.618750 TGTGGAACGACCCGACCC 61.619 66.667 0.00 0.00 42.39 4.46
2915 5034 2.356673 GTGTGGAACGACCCGACC 60.357 66.667 0.00 0.00 42.39 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.