Multiple sequence alignment - TraesCS4D01G066100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G066100 chr4D 100.000 2951 0 0 1 2951 40842300 40845250 0.000000e+00 5450.0
1 TraesCS4D01G066100 chr4B 94.151 1966 62 17 682 2631 60073729 60075657 0.000000e+00 2944.0
2 TraesCS4D01G066100 chr4B 95.545 1661 53 10 597 2252 60025981 60027625 0.000000e+00 2638.0
3 TraesCS4D01G066100 chr4B 94.340 212 11 1 2740 2951 60076379 60076589 1.020000e-84 324.0
4 TraesCS4D01G066100 chr4B 77.017 409 38 21 2000 2368 60076800 60077192 1.810000e-42 183.0
5 TraesCS4D01G066100 chr4B 95.000 40 2 0 2651 2690 60075751 60075790 2.460000e-06 63.9
6 TraesCS4D01G066100 chr4A 92.865 1934 83 24 354 2252 558657025 558655112 0.000000e+00 2756.0
7 TraesCS4D01G066100 chr4A 91.736 363 18 4 2278 2631 558655115 558654756 7.350000e-136 494.0
8 TraesCS4D01G066100 chr4A 97.647 85 2 0 272 356 734430213 734430297 2.370000e-31 147.0
9 TraesCS4D01G066100 chr2B 96.563 611 20 1 1490 2099 746165653 746165043 0.000000e+00 1011.0
10 TraesCS4D01G066100 chr2B 91.083 157 11 3 2744 2899 202914364 202914518 2.980000e-50 209.0
11 TraesCS4D01G066100 chr2B 84.058 138 11 6 2028 2162 202914038 202914167 3.990000e-24 122.0
12 TraesCS4D01G066100 chr2B 100.000 29 0 0 354 382 214898577 214898605 1.000000e-03 54.7
13 TraesCS4D01G066100 chr3B 96.399 611 21 1 1490 2099 487556644 487556034 0.000000e+00 1005.0
14 TraesCS4D01G066100 chr3B 89.552 134 12 2 133 264 488352270 488352403 5.060000e-38 169.0
15 TraesCS4D01G066100 chr2D 87.925 265 24 2 1 258 449047959 449048222 3.700000e-79 305.0
16 TraesCS4D01G066100 chr2D 83.099 213 17 9 162 355 615387003 615386791 3.020000e-40 176.0
17 TraesCS4D01G066100 chr7A 90.446 157 12 3 2744 2899 22837716 22837562 1.390000e-48 204.0
18 TraesCS4D01G066100 chr7A 82.734 139 13 6 2027 2162 22838043 22837913 2.400000e-21 113.0
19 TraesCS4D01G066100 chr3D 98.851 87 1 0 269 355 2448379 2448465 3.940000e-34 156.0
20 TraesCS4D01G066100 chr3D 98.837 86 1 0 270 355 262693889 262693974 1.420000e-33 154.0
21 TraesCS4D01G066100 chr7D 96.703 91 3 0 267 357 82924635 82924725 5.090000e-33 152.0
22 TraesCS4D01G066100 chr5D 96.629 89 3 0 268 356 553483245 553483333 6.590000e-32 148.0
23 TraesCS4D01G066100 chr5D 95.402 87 4 0 271 357 490157083 490156997 3.970000e-29 139.0
24 TraesCS4D01G066100 chr5B 97.674 86 2 0 271 356 531331317 531331402 6.590000e-32 148.0
25 TraesCS4D01G066100 chr5B 97.647 85 2 0 272 356 590498494 590498578 2.370000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G066100 chr4D 40842300 40845250 2950 False 5450.000 5450 100.0000 1 2951 1 chr4D.!!$F1 2950
1 TraesCS4D01G066100 chr4B 60025981 60027625 1644 False 2638.000 2638 95.5450 597 2252 1 chr4B.!!$F1 1655
2 TraesCS4D01G066100 chr4B 60073729 60077192 3463 False 878.725 2944 90.1270 682 2951 4 chr4B.!!$F2 2269
3 TraesCS4D01G066100 chr4A 558654756 558657025 2269 True 1625.000 2756 92.3005 354 2631 2 chr4A.!!$R1 2277
4 TraesCS4D01G066100 chr2B 746165043 746165653 610 True 1011.000 1011 96.5630 1490 2099 1 chr2B.!!$R1 609
5 TraesCS4D01G066100 chr3B 487556034 487556644 610 True 1005.000 1005 96.3990 1490 2099 1 chr3B.!!$R1 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
87 88 0.035056 ATATAATGGGAGCGCTGGCC 60.035 55.0 18.48 11.44 41.24 5.36 F
312 313 0.035317 GGACAGTGTGCATGGTGAGA 59.965 55.0 10.26 0.00 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1091 1145 2.681778 CCTGGGTGAGCTCGGTCT 60.682 66.667 9.64 0.0 0.00 3.85 R
2184 2243 0.032403 GCAGCAGCAACAAATCCACA 59.968 50.000 0.00 0.0 41.58 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.558973 GAGGAAAAAGAGAAGATTGAAGATGA 57.441 34.615 0.00 0.00 0.00 2.92
26 27 8.930846 AGGAAAAAGAGAAGATTGAAGATGAA 57.069 30.769 0.00 0.00 0.00 2.57
27 28 9.012161 AGGAAAAAGAGAAGATTGAAGATGAAG 57.988 33.333 0.00 0.00 0.00 3.02
28 29 9.007901 GGAAAAAGAGAAGATTGAAGATGAAGA 57.992 33.333 0.00 0.00 0.00 2.87
30 31 8.564509 AAAAGAGAAGATTGAAGATGAAGAGG 57.435 34.615 0.00 0.00 0.00 3.69
31 32 5.673514 AGAGAAGATTGAAGATGAAGAGGC 58.326 41.667 0.00 0.00 0.00 4.70
32 33 5.189342 AGAGAAGATTGAAGATGAAGAGGCA 59.811 40.000 0.00 0.00 0.00 4.75
33 34 5.430007 AGAAGATTGAAGATGAAGAGGCAG 58.570 41.667 0.00 0.00 0.00 4.85
34 35 3.543665 AGATTGAAGATGAAGAGGCAGC 58.456 45.455 0.00 0.00 0.00 5.25
35 36 2.119801 TTGAAGATGAAGAGGCAGCC 57.880 50.000 1.84 1.84 0.00 4.85
36 37 0.107993 TGAAGATGAAGAGGCAGCCG 60.108 55.000 5.55 0.00 0.00 5.52
37 38 0.813210 GAAGATGAAGAGGCAGCCGG 60.813 60.000 5.55 0.00 0.00 6.13
38 39 1.267574 AAGATGAAGAGGCAGCCGGA 61.268 55.000 5.05 0.00 0.00 5.14
39 40 1.227497 GATGAAGAGGCAGCCGGAG 60.227 63.158 5.05 0.00 0.00 4.63
40 41 1.680522 GATGAAGAGGCAGCCGGAGA 61.681 60.000 5.05 0.00 0.00 3.71
41 42 1.267574 ATGAAGAGGCAGCCGGAGAA 61.268 55.000 5.05 0.00 0.00 2.87
42 43 1.296715 GAAGAGGCAGCCGGAGAAA 59.703 57.895 5.05 0.00 0.00 2.52
43 44 0.321653 GAAGAGGCAGCCGGAGAAAA 60.322 55.000 5.05 0.00 0.00 2.29
44 45 0.329596 AAGAGGCAGCCGGAGAAAAT 59.670 50.000 5.05 0.00 0.00 1.82
45 46 1.204146 AGAGGCAGCCGGAGAAAATA 58.796 50.000 5.05 0.00 0.00 1.40
46 47 1.771255 AGAGGCAGCCGGAGAAAATAT 59.229 47.619 5.05 0.00 0.00 1.28
47 48 2.173569 AGAGGCAGCCGGAGAAAATATT 59.826 45.455 5.05 0.00 0.00 1.28
48 49 2.952310 GAGGCAGCCGGAGAAAATATTT 59.048 45.455 5.05 0.00 0.00 1.40
49 50 2.689983 AGGCAGCCGGAGAAAATATTTG 59.310 45.455 5.05 0.00 0.00 2.32
50 51 2.427095 GGCAGCCGGAGAAAATATTTGT 59.573 45.455 5.05 0.00 0.00 2.83
51 52 3.119137 GGCAGCCGGAGAAAATATTTGTT 60.119 43.478 5.05 0.00 0.00 2.83
52 53 4.105486 GCAGCCGGAGAAAATATTTGTTC 58.895 43.478 5.05 2.88 0.00 3.18
53 54 4.380444 GCAGCCGGAGAAAATATTTGTTCA 60.380 41.667 5.05 0.00 0.00 3.18
54 55 5.679638 GCAGCCGGAGAAAATATTTGTTCAT 60.680 40.000 5.05 0.00 0.00 2.57
55 56 5.745294 CAGCCGGAGAAAATATTTGTTCATG 59.255 40.000 5.05 0.00 0.00 3.07
56 57 5.418840 AGCCGGAGAAAATATTTGTTCATGT 59.581 36.000 5.05 0.00 0.00 3.21
57 58 5.516339 GCCGGAGAAAATATTTGTTCATGTG 59.484 40.000 5.05 0.00 0.00 3.21
58 59 5.516339 CCGGAGAAAATATTTGTTCATGTGC 59.484 40.000 0.00 0.00 0.00 4.57
59 60 6.092092 CGGAGAAAATATTTGTTCATGTGCA 58.908 36.000 0.39 0.00 0.00 4.57
60 61 6.585702 CGGAGAAAATATTTGTTCATGTGCAA 59.414 34.615 0.39 0.00 0.00 4.08
61 62 7.276218 CGGAGAAAATATTTGTTCATGTGCAAT 59.724 33.333 0.39 0.00 0.00 3.56
62 63 8.385111 GGAGAAAATATTTGTTCATGTGCAATG 58.615 33.333 0.39 0.00 0.00 2.82
63 64 9.142515 GAGAAAATATTTGTTCATGTGCAATGA 57.857 29.630 0.39 7.27 0.00 2.57
64 65 9.146984 AGAAAATATTTGTTCATGTGCAATGAG 57.853 29.630 0.39 0.00 0.00 2.90
65 66 7.837202 AAATATTTGTTCATGTGCAATGAGG 57.163 32.000 0.00 0.00 0.00 3.86
66 67 6.778834 ATATTTGTTCATGTGCAATGAGGA 57.221 33.333 10.19 0.00 0.00 3.71
67 68 4.508461 TTTGTTCATGTGCAATGAGGAG 57.492 40.909 10.19 0.00 0.00 3.69
68 69 3.421919 TGTTCATGTGCAATGAGGAGA 57.578 42.857 10.19 0.00 0.00 3.71
69 70 3.959293 TGTTCATGTGCAATGAGGAGAT 58.041 40.909 10.19 0.00 0.00 2.75
70 71 5.101648 TGTTCATGTGCAATGAGGAGATA 57.898 39.130 10.19 0.00 0.00 1.98
71 72 5.687780 TGTTCATGTGCAATGAGGAGATAT 58.312 37.500 10.19 0.00 0.00 1.63
72 73 6.829849 TGTTCATGTGCAATGAGGAGATATA 58.170 36.000 10.19 0.00 0.00 0.86
73 74 7.281841 TGTTCATGTGCAATGAGGAGATATAA 58.718 34.615 10.19 0.00 0.00 0.98
74 75 7.940688 TGTTCATGTGCAATGAGGAGATATAAT 59.059 33.333 10.19 0.00 0.00 1.28
75 76 7.916914 TCATGTGCAATGAGGAGATATAATG 57.083 36.000 7.27 0.00 0.00 1.90
76 77 6.882678 TCATGTGCAATGAGGAGATATAATGG 59.117 38.462 7.27 0.00 0.00 3.16
77 78 5.563592 TGTGCAATGAGGAGATATAATGGG 58.436 41.667 0.00 0.00 0.00 4.00
78 79 5.310331 TGTGCAATGAGGAGATATAATGGGA 59.690 40.000 0.00 0.00 0.00 4.37
79 80 5.879223 GTGCAATGAGGAGATATAATGGGAG 59.121 44.000 0.00 0.00 0.00 4.30
80 81 4.880696 GCAATGAGGAGATATAATGGGAGC 59.119 45.833 0.00 0.00 0.00 4.70
81 82 5.114780 CAATGAGGAGATATAATGGGAGCG 58.885 45.833 0.00 0.00 0.00 5.03
82 83 2.497675 TGAGGAGATATAATGGGAGCGC 59.502 50.000 0.00 0.00 0.00 5.92
83 84 2.763448 GAGGAGATATAATGGGAGCGCT 59.237 50.000 11.27 11.27 0.00 5.92
84 85 2.499289 AGGAGATATAATGGGAGCGCTG 59.501 50.000 18.48 0.00 0.00 5.18
85 86 2.419297 GGAGATATAATGGGAGCGCTGG 60.419 54.545 18.48 0.00 0.00 4.85
86 87 1.065854 AGATATAATGGGAGCGCTGGC 60.066 52.381 18.48 0.00 40.37 4.85
87 88 0.035056 ATATAATGGGAGCGCTGGCC 60.035 55.000 18.48 11.44 41.24 5.36
88 89 2.449031 TATAATGGGAGCGCTGGCCG 62.449 60.000 18.48 0.00 41.24 6.13
105 106 3.624305 CGTGGACGGATGTCTGTAG 57.376 57.895 0.00 0.00 44.83 2.74
106 107 0.100682 CGTGGACGGATGTCTGTAGG 59.899 60.000 0.00 0.00 44.83 3.18
107 108 1.183549 GTGGACGGATGTCTGTAGGT 58.816 55.000 0.00 0.00 44.83 3.08
108 109 2.372264 GTGGACGGATGTCTGTAGGTA 58.628 52.381 0.00 0.00 44.83 3.08
109 110 2.358267 GTGGACGGATGTCTGTAGGTAG 59.642 54.545 0.00 0.00 44.83 3.18
110 111 1.337387 GGACGGATGTCTGTAGGTAGC 59.663 57.143 0.00 0.00 44.83 3.58
111 112 1.002684 GACGGATGTCTGTAGGTAGCG 60.003 57.143 0.00 0.00 42.08 4.26
112 113 0.311165 CGGATGTCTGTAGGTAGCGG 59.689 60.000 0.00 0.00 0.00 5.52
113 114 1.688772 GGATGTCTGTAGGTAGCGGA 58.311 55.000 0.00 0.00 0.00 5.54
114 115 2.029623 GGATGTCTGTAGGTAGCGGAA 58.970 52.381 0.00 0.00 0.00 4.30
115 116 2.628657 GGATGTCTGTAGGTAGCGGAAT 59.371 50.000 0.00 0.00 0.00 3.01
116 117 3.305471 GGATGTCTGTAGGTAGCGGAATC 60.305 52.174 0.00 0.00 0.00 2.52
117 118 3.014304 TGTCTGTAGGTAGCGGAATCT 57.986 47.619 0.00 0.00 0.00 2.40
118 119 3.362706 TGTCTGTAGGTAGCGGAATCTT 58.637 45.455 0.00 0.00 0.00 2.40
119 120 3.767673 TGTCTGTAGGTAGCGGAATCTTT 59.232 43.478 0.00 0.00 0.00 2.52
120 121 4.222145 TGTCTGTAGGTAGCGGAATCTTTT 59.778 41.667 0.00 0.00 0.00 2.27
121 122 5.176592 GTCTGTAGGTAGCGGAATCTTTTT 58.823 41.667 0.00 0.00 0.00 1.94
122 123 6.071221 TGTCTGTAGGTAGCGGAATCTTTTTA 60.071 38.462 0.00 0.00 0.00 1.52
123 124 6.255237 GTCTGTAGGTAGCGGAATCTTTTTAC 59.745 42.308 0.00 0.00 0.00 2.01
124 125 5.104374 TGTAGGTAGCGGAATCTTTTTACG 58.896 41.667 0.00 0.00 0.00 3.18
125 126 4.198028 AGGTAGCGGAATCTTTTTACGT 57.802 40.909 0.00 0.00 0.00 3.57
126 127 3.930848 AGGTAGCGGAATCTTTTTACGTG 59.069 43.478 0.00 0.00 0.00 4.49
127 128 3.063045 GGTAGCGGAATCTTTTTACGTGG 59.937 47.826 0.00 0.00 0.00 4.94
128 129 2.081462 AGCGGAATCTTTTTACGTGGG 58.919 47.619 0.00 0.00 0.00 4.61
129 130 2.078392 GCGGAATCTTTTTACGTGGGA 58.922 47.619 0.00 0.00 0.00 4.37
130 131 2.485038 GCGGAATCTTTTTACGTGGGAA 59.515 45.455 0.00 0.00 0.00 3.97
131 132 3.425758 GCGGAATCTTTTTACGTGGGAAG 60.426 47.826 0.00 0.00 0.00 3.46
132 133 3.998341 CGGAATCTTTTTACGTGGGAAGA 59.002 43.478 0.00 5.05 33.17 2.87
133 134 4.092968 CGGAATCTTTTTACGTGGGAAGAG 59.907 45.833 0.00 0.00 32.25 2.85
134 135 5.243207 GGAATCTTTTTACGTGGGAAGAGA 58.757 41.667 0.00 1.18 32.25 3.10
135 136 5.704053 GGAATCTTTTTACGTGGGAAGAGAA 59.296 40.000 0.00 0.00 32.25 2.87
136 137 6.206048 GGAATCTTTTTACGTGGGAAGAGAAA 59.794 38.462 0.00 0.00 32.25 2.52
137 138 6.803154 ATCTTTTTACGTGGGAAGAGAAAG 57.197 37.500 0.00 0.00 32.25 2.62
138 139 5.061179 TCTTTTTACGTGGGAAGAGAAAGG 58.939 41.667 0.00 0.00 0.00 3.11
139 140 2.467566 TTACGTGGGAAGAGAAAGGC 57.532 50.000 0.00 0.00 0.00 4.35
140 141 1.640917 TACGTGGGAAGAGAAAGGCT 58.359 50.000 0.00 0.00 0.00 4.58
141 142 0.035458 ACGTGGGAAGAGAAAGGCTG 59.965 55.000 0.00 0.00 0.00 4.85
142 143 0.035458 CGTGGGAAGAGAAAGGCTGT 59.965 55.000 0.00 0.00 0.00 4.40
143 144 1.543429 CGTGGGAAGAGAAAGGCTGTT 60.543 52.381 0.00 0.00 31.91 3.16
144 145 1.882623 GTGGGAAGAGAAAGGCTGTTG 59.117 52.381 0.00 0.00 28.91 3.33
145 146 1.202927 TGGGAAGAGAAAGGCTGTTGG 60.203 52.381 0.00 0.00 28.91 3.77
146 147 1.539157 GGAAGAGAAAGGCTGTTGGG 58.461 55.000 0.00 0.00 28.91 4.12
147 148 0.884514 GAAGAGAAAGGCTGTTGGGC 59.115 55.000 0.00 0.00 41.20 5.36
157 158 3.283259 GGCTGTTGGGCTCTTACTATT 57.717 47.619 0.00 0.00 37.53 1.73
158 159 2.945668 GGCTGTTGGGCTCTTACTATTG 59.054 50.000 0.00 0.00 37.53 1.90
159 160 2.945668 GCTGTTGGGCTCTTACTATTGG 59.054 50.000 0.00 0.00 0.00 3.16
160 161 3.370527 GCTGTTGGGCTCTTACTATTGGA 60.371 47.826 0.00 0.00 0.00 3.53
161 162 4.843728 CTGTTGGGCTCTTACTATTGGAA 58.156 43.478 0.00 0.00 0.00 3.53
162 163 5.249780 TGTTGGGCTCTTACTATTGGAAA 57.750 39.130 0.00 0.00 0.00 3.13
163 164 5.007682 TGTTGGGCTCTTACTATTGGAAAC 58.992 41.667 0.00 0.00 0.00 2.78
164 165 3.869065 TGGGCTCTTACTATTGGAAACG 58.131 45.455 0.00 0.00 0.00 3.60
165 166 3.203716 GGGCTCTTACTATTGGAAACGG 58.796 50.000 0.00 0.00 0.00 4.44
166 167 3.118519 GGGCTCTTACTATTGGAAACGGA 60.119 47.826 0.00 0.00 0.00 4.69
167 168 4.510571 GGCTCTTACTATTGGAAACGGAA 58.489 43.478 0.00 0.00 0.00 4.30
168 169 4.571176 GGCTCTTACTATTGGAAACGGAAG 59.429 45.833 0.00 0.00 0.00 3.46
169 170 4.034163 GCTCTTACTATTGGAAACGGAAGC 59.966 45.833 0.00 0.00 0.00 3.86
170 171 5.155278 TCTTACTATTGGAAACGGAAGCA 57.845 39.130 0.00 0.00 0.00 3.91
171 172 4.933400 TCTTACTATTGGAAACGGAAGCAC 59.067 41.667 0.00 0.00 0.00 4.40
172 173 3.418684 ACTATTGGAAACGGAAGCACT 57.581 42.857 0.00 0.00 0.00 4.40
173 174 4.546829 ACTATTGGAAACGGAAGCACTA 57.453 40.909 0.00 0.00 0.00 2.74
174 175 4.901868 ACTATTGGAAACGGAAGCACTAA 58.098 39.130 0.00 0.00 0.00 2.24
175 176 5.497474 ACTATTGGAAACGGAAGCACTAAT 58.503 37.500 0.00 0.00 0.00 1.73
176 177 4.701956 ATTGGAAACGGAAGCACTAATG 57.298 40.909 0.00 0.00 0.00 1.90
177 178 3.410631 TGGAAACGGAAGCACTAATGA 57.589 42.857 0.00 0.00 0.00 2.57
178 179 3.071479 TGGAAACGGAAGCACTAATGAC 58.929 45.455 0.00 0.00 0.00 3.06
179 180 3.244422 TGGAAACGGAAGCACTAATGACT 60.244 43.478 0.00 0.00 0.00 3.41
180 181 3.125316 GGAAACGGAAGCACTAATGACTG 59.875 47.826 0.00 0.00 0.00 3.51
181 182 3.402628 AACGGAAGCACTAATGACTGT 57.597 42.857 0.00 0.00 0.00 3.55
182 183 3.402628 ACGGAAGCACTAATGACTGTT 57.597 42.857 0.00 0.00 0.00 3.16
183 184 4.530710 ACGGAAGCACTAATGACTGTTA 57.469 40.909 0.00 0.00 0.00 2.41
184 185 4.243270 ACGGAAGCACTAATGACTGTTAC 58.757 43.478 0.00 0.00 0.00 2.50
185 186 4.021368 ACGGAAGCACTAATGACTGTTACT 60.021 41.667 0.00 0.00 0.00 2.24
186 187 4.563184 CGGAAGCACTAATGACTGTTACTC 59.437 45.833 0.00 0.00 0.00 2.59
187 188 5.622460 CGGAAGCACTAATGACTGTTACTCT 60.622 44.000 0.00 0.00 0.00 3.24
188 189 6.166982 GGAAGCACTAATGACTGTTACTCTT 58.833 40.000 0.00 0.00 0.00 2.85
189 190 6.311690 GGAAGCACTAATGACTGTTACTCTTC 59.688 42.308 0.00 0.00 0.00 2.87
190 191 5.403246 AGCACTAATGACTGTTACTCTTCG 58.597 41.667 0.00 0.00 0.00 3.79
191 192 4.563184 GCACTAATGACTGTTACTCTTCGG 59.437 45.833 0.00 0.00 0.00 4.30
192 193 5.621555 GCACTAATGACTGTTACTCTTCGGA 60.622 44.000 0.00 0.00 0.00 4.55
193 194 6.565234 CACTAATGACTGTTACTCTTCGGAT 58.435 40.000 0.00 0.00 0.00 4.18
194 195 6.693545 CACTAATGACTGTTACTCTTCGGATC 59.306 42.308 0.00 0.00 0.00 3.36
195 196 5.661056 AATGACTGTTACTCTTCGGATCA 57.339 39.130 0.00 0.00 0.00 2.92
196 197 4.436242 TGACTGTTACTCTTCGGATCAC 57.564 45.455 0.00 0.00 0.00 3.06
197 198 3.192844 TGACTGTTACTCTTCGGATCACC 59.807 47.826 0.00 0.00 0.00 4.02
198 199 3.162666 ACTGTTACTCTTCGGATCACCA 58.837 45.455 0.00 0.00 35.59 4.17
199 200 3.769844 ACTGTTACTCTTCGGATCACCAT 59.230 43.478 0.00 0.00 35.59 3.55
200 201 4.223032 ACTGTTACTCTTCGGATCACCATT 59.777 41.667 0.00 0.00 35.59 3.16
201 202 4.503910 TGTTACTCTTCGGATCACCATTG 58.496 43.478 0.00 0.00 35.59 2.82
202 203 4.221924 TGTTACTCTTCGGATCACCATTGA 59.778 41.667 0.00 0.00 35.73 2.57
203 204 3.533606 ACTCTTCGGATCACCATTGAG 57.466 47.619 0.00 0.00 34.35 3.02
204 205 2.169352 ACTCTTCGGATCACCATTGAGG 59.831 50.000 0.00 0.00 45.67 3.86
205 206 1.134401 TCTTCGGATCACCATTGAGGC 60.134 52.381 0.00 0.00 43.14 4.70
206 207 0.911769 TTCGGATCACCATTGAGGCT 59.088 50.000 0.00 0.00 43.14 4.58
207 208 0.178767 TCGGATCACCATTGAGGCTG 59.821 55.000 0.00 0.00 43.14 4.85
208 209 0.107508 CGGATCACCATTGAGGCTGT 60.108 55.000 0.00 0.00 43.14 4.40
209 210 1.679944 CGGATCACCATTGAGGCTGTT 60.680 52.381 0.00 0.00 43.14 3.16
210 211 2.019984 GGATCACCATTGAGGCTGTTC 58.980 52.381 0.00 0.00 43.14 3.18
211 212 1.667724 GATCACCATTGAGGCTGTTCG 59.332 52.381 0.00 0.00 43.14 3.95
212 213 0.396435 TCACCATTGAGGCTGTTCGT 59.604 50.000 0.00 0.00 43.14 3.85
213 214 1.202758 TCACCATTGAGGCTGTTCGTT 60.203 47.619 0.00 0.00 43.14 3.85
214 215 1.608590 CACCATTGAGGCTGTTCGTTT 59.391 47.619 0.00 0.00 43.14 3.60
215 216 1.880027 ACCATTGAGGCTGTTCGTTTC 59.120 47.619 0.00 0.00 43.14 2.78
216 217 2.154462 CCATTGAGGCTGTTCGTTTCT 58.846 47.619 0.00 0.00 0.00 2.52
217 218 2.095567 CCATTGAGGCTGTTCGTTTCTG 60.096 50.000 0.00 0.00 0.00 3.02
218 219 0.944386 TTGAGGCTGTTCGTTTCTGC 59.056 50.000 0.00 0.00 0.00 4.26
219 220 0.106708 TGAGGCTGTTCGTTTCTGCT 59.893 50.000 0.00 0.00 0.00 4.24
220 221 1.230324 GAGGCTGTTCGTTTCTGCTT 58.770 50.000 0.00 0.00 0.00 3.91
221 222 0.947244 AGGCTGTTCGTTTCTGCTTG 59.053 50.000 0.00 0.00 0.00 4.01
222 223 0.661483 GGCTGTTCGTTTCTGCTTGC 60.661 55.000 0.00 0.00 0.00 4.01
223 224 0.993746 GCTGTTCGTTTCTGCTTGCG 60.994 55.000 0.00 0.00 0.00 4.85
224 225 0.993746 CTGTTCGTTTCTGCTTGCGC 60.994 55.000 0.00 0.00 0.00 6.09
225 226 1.010125 GTTCGTTTCTGCTTGCGCA 60.010 52.632 5.66 5.66 45.60 6.09
226 227 0.385974 GTTCGTTTCTGCTTGCGCAT 60.386 50.000 12.75 0.00 46.74 4.73
227 228 0.385849 TTCGTTTCTGCTTGCGCATG 60.386 50.000 12.75 16.07 46.74 4.06
228 229 1.081906 CGTTTCTGCTTGCGCATGT 60.082 52.632 22.50 0.00 46.74 3.21
229 230 0.165727 CGTTTCTGCTTGCGCATGTA 59.834 50.000 22.50 17.94 46.74 2.29
230 231 1.202065 CGTTTCTGCTTGCGCATGTAT 60.202 47.619 22.50 0.00 46.74 2.29
231 232 2.728846 CGTTTCTGCTTGCGCATGTATT 60.729 45.455 22.50 0.00 46.74 1.89
232 233 2.830772 TTCTGCTTGCGCATGTATTC 57.169 45.000 22.50 8.17 46.74 1.75
233 234 1.736612 TCTGCTTGCGCATGTATTCA 58.263 45.000 22.50 11.96 46.74 2.57
234 235 2.083002 TCTGCTTGCGCATGTATTCAA 58.917 42.857 22.50 0.00 46.74 2.69
235 236 2.096335 TCTGCTTGCGCATGTATTCAAG 59.904 45.455 22.50 10.77 46.74 3.02
236 237 1.132834 TGCTTGCGCATGTATTCAAGG 59.867 47.619 22.50 0.00 42.25 3.61
237 238 1.401552 GCTTGCGCATGTATTCAAGGA 59.598 47.619 22.50 0.00 37.12 3.36
238 239 2.159393 GCTTGCGCATGTATTCAAGGAA 60.159 45.455 22.50 0.00 37.12 3.36
239 240 3.688272 CTTGCGCATGTATTCAAGGAAG 58.312 45.455 12.75 0.00 34.04 3.46
240 241 1.401552 TGCGCATGTATTCAAGGAAGC 59.598 47.619 5.66 0.00 0.00 3.86
241 242 1.672881 GCGCATGTATTCAAGGAAGCT 59.327 47.619 0.30 0.00 0.00 3.74
242 243 2.540361 GCGCATGTATTCAAGGAAGCTG 60.540 50.000 0.30 0.00 0.00 4.24
243 244 2.540361 CGCATGTATTCAAGGAAGCTGC 60.540 50.000 0.00 0.00 0.00 5.25
244 245 2.686915 GCATGTATTCAAGGAAGCTGCT 59.313 45.455 0.00 0.00 0.00 4.24
245 246 3.488721 GCATGTATTCAAGGAAGCTGCTG 60.489 47.826 1.35 0.00 0.00 4.41
246 247 3.701205 TGTATTCAAGGAAGCTGCTGA 57.299 42.857 1.35 0.00 0.00 4.26
247 248 3.338249 TGTATTCAAGGAAGCTGCTGAC 58.662 45.455 1.35 0.00 0.00 3.51
248 249 1.446907 ATTCAAGGAAGCTGCTGACG 58.553 50.000 1.35 0.00 0.00 4.35
249 250 0.106708 TTCAAGGAAGCTGCTGACGT 59.893 50.000 1.35 0.00 0.00 4.34
250 251 0.601046 TCAAGGAAGCTGCTGACGTG 60.601 55.000 1.35 8.11 0.00 4.49
251 252 1.302033 AAGGAAGCTGCTGACGTGG 60.302 57.895 1.35 0.00 0.00 4.94
252 253 3.426568 GGAAGCTGCTGACGTGGC 61.427 66.667 1.35 0.00 0.00 5.01
253 254 2.358003 GAAGCTGCTGACGTGGCT 60.358 61.111 1.35 0.00 36.53 4.75
254 255 1.963338 GAAGCTGCTGACGTGGCTT 60.963 57.895 1.35 0.45 45.91 4.35
255 256 2.180131 GAAGCTGCTGACGTGGCTTG 62.180 60.000 1.35 0.00 43.74 4.01
256 257 2.947938 AAGCTGCTGACGTGGCTTGT 62.948 55.000 1.35 0.00 42.40 3.16
257 258 1.667830 GCTGCTGACGTGGCTTGTA 60.668 57.895 0.00 0.00 0.00 2.41
258 259 1.630244 GCTGCTGACGTGGCTTGTAG 61.630 60.000 0.00 0.00 0.00 2.74
259 260 1.005037 TGCTGACGTGGCTTGTAGG 60.005 57.895 0.00 0.00 0.00 3.18
260 261 2.391389 GCTGACGTGGCTTGTAGGC 61.391 63.158 0.00 0.00 41.77 3.93
261 262 1.293498 CTGACGTGGCTTGTAGGCT 59.707 57.895 0.00 0.00 41.96 4.58
262 263 1.005037 TGACGTGGCTTGTAGGCTG 60.005 57.895 0.00 0.00 41.96 4.85
263 264 1.292223 GACGTGGCTTGTAGGCTGA 59.708 57.895 0.00 0.00 41.96 4.26
264 265 0.108138 GACGTGGCTTGTAGGCTGAT 60.108 55.000 0.00 0.00 41.96 2.90
265 266 0.108138 ACGTGGCTTGTAGGCTGATC 60.108 55.000 0.00 0.00 41.96 2.92
266 267 0.176680 CGTGGCTTGTAGGCTGATCT 59.823 55.000 0.00 0.00 41.96 2.75
267 268 1.661341 GTGGCTTGTAGGCTGATCTG 58.339 55.000 0.00 0.00 41.96 2.90
268 269 0.543277 TGGCTTGTAGGCTGATCTGG 59.457 55.000 0.00 0.00 41.96 3.86
269 270 0.833287 GGCTTGTAGGCTGATCTGGA 59.167 55.000 0.00 0.00 37.85 3.86
270 271 1.210478 GGCTTGTAGGCTGATCTGGAA 59.790 52.381 0.00 0.00 37.85 3.53
271 272 2.158696 GGCTTGTAGGCTGATCTGGAAT 60.159 50.000 0.00 0.00 37.85 3.01
272 273 2.877168 GCTTGTAGGCTGATCTGGAATG 59.123 50.000 0.00 0.00 0.00 2.67
273 274 3.432749 GCTTGTAGGCTGATCTGGAATGA 60.433 47.826 0.00 0.00 0.00 2.57
274 275 3.827008 TGTAGGCTGATCTGGAATGAC 57.173 47.619 0.00 0.00 0.00 3.06
275 276 2.101415 TGTAGGCTGATCTGGAATGACG 59.899 50.000 0.00 0.00 0.00 4.35
276 277 1.198713 AGGCTGATCTGGAATGACGT 58.801 50.000 1.46 0.00 0.00 4.34
277 278 1.134580 AGGCTGATCTGGAATGACGTG 60.135 52.381 0.00 0.00 0.00 4.49
278 279 1.293924 GCTGATCTGGAATGACGTGG 58.706 55.000 0.00 0.00 0.00 4.94
279 280 1.293924 CTGATCTGGAATGACGTGGC 58.706 55.000 0.00 0.00 0.00 5.01
280 281 0.612744 TGATCTGGAATGACGTGGCA 59.387 50.000 0.00 0.00 0.00 4.92
281 282 1.009829 GATCTGGAATGACGTGGCAC 58.990 55.000 7.79 7.79 0.00 5.01
282 283 0.324614 ATCTGGAATGACGTGGCACA 59.675 50.000 19.09 0.00 0.00 4.57
283 284 0.324614 TCTGGAATGACGTGGCACAT 59.675 50.000 19.09 0.54 44.52 3.21
284 285 0.729116 CTGGAATGACGTGGCACATC 59.271 55.000 19.09 13.20 44.52 3.06
285 286 1.018752 TGGAATGACGTGGCACATCG 61.019 55.000 19.09 6.43 44.52 3.84
286 287 1.060937 GAATGACGTGGCACATCGC 59.939 57.895 19.09 1.83 44.52 4.58
287 288 1.361668 GAATGACGTGGCACATCGCT 61.362 55.000 19.09 2.48 44.52 4.93
288 289 1.638388 AATGACGTGGCACATCGCTG 61.638 55.000 19.09 2.21 44.52 5.18
289 290 2.432456 GACGTGGCACATCGCTGA 60.432 61.111 19.09 0.00 44.52 4.26
290 291 1.811266 GACGTGGCACATCGCTGAT 60.811 57.895 19.09 0.00 44.52 2.90
291 292 2.028766 GACGTGGCACATCGCTGATG 62.029 60.000 19.09 14.34 44.52 3.07
299 300 3.448267 CATCGCTGATGTGGACAGT 57.552 52.632 9.48 0.00 35.54 3.55
300 301 1.004595 CATCGCTGATGTGGACAGTG 58.995 55.000 9.48 0.00 44.17 3.66
301 302 0.610174 ATCGCTGATGTGGACAGTGT 59.390 50.000 0.00 0.00 43.54 3.55
302 303 0.319813 TCGCTGATGTGGACAGTGTG 60.320 55.000 0.00 0.00 43.54 3.82
303 304 1.871772 GCTGATGTGGACAGTGTGC 59.128 57.895 8.00 8.00 37.64 4.57
304 305 0.886043 GCTGATGTGGACAGTGTGCA 60.886 55.000 14.10 14.10 37.64 4.57
305 306 1.817357 CTGATGTGGACAGTGTGCAT 58.183 50.000 21.00 11.86 36.11 3.96
306 307 1.467342 CTGATGTGGACAGTGTGCATG 59.533 52.381 21.00 5.67 36.11 4.06
307 308 0.806868 GATGTGGACAGTGTGCATGG 59.193 55.000 21.00 0.00 36.11 3.66
308 309 0.111061 ATGTGGACAGTGTGCATGGT 59.889 50.000 21.00 7.17 36.11 3.55
309 310 0.818852 TGTGGACAGTGTGCATGGTG 60.819 55.000 21.00 0.00 36.11 4.17
310 311 0.534877 GTGGACAGTGTGCATGGTGA 60.535 55.000 21.00 0.00 36.11 4.02
311 312 0.250424 TGGACAGTGTGCATGGTGAG 60.250 55.000 14.10 0.00 0.00 3.51
312 313 0.035317 GGACAGTGTGCATGGTGAGA 59.965 55.000 10.26 0.00 0.00 3.27
313 314 1.436600 GACAGTGTGCATGGTGAGAG 58.563 55.000 0.00 0.00 0.00 3.20
314 315 1.001293 GACAGTGTGCATGGTGAGAGA 59.999 52.381 0.00 0.00 0.00 3.10
315 316 1.417517 ACAGTGTGCATGGTGAGAGAA 59.582 47.619 0.00 0.00 0.00 2.87
316 317 2.039480 ACAGTGTGCATGGTGAGAGAAT 59.961 45.455 0.00 0.00 0.00 2.40
317 318 3.261643 ACAGTGTGCATGGTGAGAGAATA 59.738 43.478 0.00 0.00 0.00 1.75
318 319 3.869832 CAGTGTGCATGGTGAGAGAATAG 59.130 47.826 0.00 0.00 0.00 1.73
319 320 3.118482 AGTGTGCATGGTGAGAGAATAGG 60.118 47.826 0.00 0.00 0.00 2.57
320 321 2.171237 TGTGCATGGTGAGAGAATAGGG 59.829 50.000 0.00 0.00 0.00 3.53
321 322 2.435805 GTGCATGGTGAGAGAATAGGGA 59.564 50.000 0.00 0.00 0.00 4.20
322 323 2.702478 TGCATGGTGAGAGAATAGGGAG 59.298 50.000 0.00 0.00 0.00 4.30
323 324 2.703007 GCATGGTGAGAGAATAGGGAGT 59.297 50.000 0.00 0.00 0.00 3.85
324 325 3.898123 GCATGGTGAGAGAATAGGGAGTA 59.102 47.826 0.00 0.00 0.00 2.59
325 326 4.021544 GCATGGTGAGAGAATAGGGAGTAG 60.022 50.000 0.00 0.00 0.00 2.57
326 327 4.883021 TGGTGAGAGAATAGGGAGTAGT 57.117 45.455 0.00 0.00 0.00 2.73
327 328 4.537751 TGGTGAGAGAATAGGGAGTAGTG 58.462 47.826 0.00 0.00 0.00 2.74
328 329 3.892588 GGTGAGAGAATAGGGAGTAGTGG 59.107 52.174 0.00 0.00 0.00 4.00
329 330 3.892588 GTGAGAGAATAGGGAGTAGTGGG 59.107 52.174 0.00 0.00 0.00 4.61
330 331 3.117093 TGAGAGAATAGGGAGTAGTGGGG 60.117 52.174 0.00 0.00 0.00 4.96
331 332 3.140143 AGAGAATAGGGAGTAGTGGGGA 58.860 50.000 0.00 0.00 0.00 4.81
332 333 3.141272 AGAGAATAGGGAGTAGTGGGGAG 59.859 52.174 0.00 0.00 0.00 4.30
333 334 1.972075 GAATAGGGAGTAGTGGGGAGC 59.028 57.143 0.00 0.00 0.00 4.70
334 335 0.941963 ATAGGGAGTAGTGGGGAGCA 59.058 55.000 0.00 0.00 0.00 4.26
335 336 0.714180 TAGGGAGTAGTGGGGAGCAA 59.286 55.000 0.00 0.00 0.00 3.91
336 337 0.910088 AGGGAGTAGTGGGGAGCAAC 60.910 60.000 0.00 0.00 0.00 4.17
337 338 0.910088 GGGAGTAGTGGGGAGCAACT 60.910 60.000 0.00 0.00 0.00 3.16
338 339 0.984995 GGAGTAGTGGGGAGCAACTT 59.015 55.000 0.00 0.00 0.00 2.66
339 340 1.066071 GGAGTAGTGGGGAGCAACTTC 60.066 57.143 0.00 0.00 0.00 3.01
340 341 1.903183 GAGTAGTGGGGAGCAACTTCT 59.097 52.381 0.00 0.00 0.00 2.85
341 342 2.303311 GAGTAGTGGGGAGCAACTTCTT 59.697 50.000 0.00 0.00 0.00 2.52
342 343 3.514309 GAGTAGTGGGGAGCAACTTCTTA 59.486 47.826 0.00 0.00 0.00 2.10
343 344 3.908103 AGTAGTGGGGAGCAACTTCTTAA 59.092 43.478 0.00 0.00 0.00 1.85
344 345 3.425162 AGTGGGGAGCAACTTCTTAAG 57.575 47.619 0.00 0.00 0.00 1.85
345 346 2.979678 AGTGGGGAGCAACTTCTTAAGA 59.020 45.455 0.00 0.00 0.00 2.10
346 347 3.394606 AGTGGGGAGCAACTTCTTAAGAA 59.605 43.478 16.85 16.85 0.00 2.52
347 348 4.043435 AGTGGGGAGCAACTTCTTAAGAAT 59.957 41.667 18.02 3.17 33.01 2.40
348 349 4.156739 GTGGGGAGCAACTTCTTAAGAATG 59.843 45.833 18.02 14.95 33.01 2.67
349 350 3.696548 GGGGAGCAACTTCTTAAGAATGG 59.303 47.826 18.02 10.22 33.01 3.16
350 351 4.336280 GGGAGCAACTTCTTAAGAATGGT 58.664 43.478 18.02 18.40 34.27 3.55
351 352 5.497474 GGGAGCAACTTCTTAAGAATGGTA 58.503 41.667 18.02 0.00 32.73 3.25
352 353 5.586643 GGGAGCAACTTCTTAAGAATGGTAG 59.413 44.000 18.02 8.78 32.73 3.18
423 424 6.909895 TGTTTAATAATGTGCAATCCGATTCG 59.090 34.615 0.00 0.00 0.00 3.34
428 429 1.876799 TGTGCAATCCGATTCGTTTGT 59.123 42.857 15.82 0.00 0.00 2.83
429 430 2.292016 TGTGCAATCCGATTCGTTTGTT 59.708 40.909 15.82 0.72 0.00 2.83
441 442 9.440784 TCCGATTCGTTTGTTATTTTATTATGC 57.559 29.630 5.20 0.00 0.00 3.14
477 478 9.748708 TTCAAAAGACAAAATAGGAAATCTGTG 57.251 29.630 0.00 0.00 0.00 3.66
479 480 9.533253 CAAAAGACAAAATAGGAAATCTGTGTT 57.467 29.630 0.00 0.00 0.00 3.32
506 507 1.525995 CCAGCACGTTGGAGTTGGT 60.526 57.895 0.00 0.00 40.87 3.67
545 546 6.293735 CCGCTTGGTATTTTTGTTAGTCTTGA 60.294 38.462 0.00 0.00 0.00 3.02
546 547 7.305474 CGCTTGGTATTTTTGTTAGTCTTGAT 58.695 34.615 0.00 0.00 0.00 2.57
547 548 8.447833 CGCTTGGTATTTTTGTTAGTCTTGATA 58.552 33.333 0.00 0.00 0.00 2.15
609 642 1.493950 CGTGCTCAGAATCCGATGCC 61.494 60.000 0.00 0.00 0.00 4.40
748 782 0.394938 TGGACACACATAGCCGTTGT 59.605 50.000 0.00 0.00 0.00 3.32
764 798 0.324614 TTGTGTGATGCCGTCTCCAT 59.675 50.000 0.00 0.00 0.00 3.41
853 890 1.681486 CTTCCCTCTCGCCCTTCTCC 61.681 65.000 0.00 0.00 0.00 3.71
854 891 3.157949 CCCTCTCGCCCTTCTCCC 61.158 72.222 0.00 0.00 0.00 4.30
855 892 3.157949 CCTCTCGCCCTTCTCCCC 61.158 72.222 0.00 0.00 0.00 4.81
856 893 2.364317 CTCTCGCCCTTCTCCCCA 60.364 66.667 0.00 0.00 0.00 4.96
1095 1149 4.176851 GGCGACGAGACCGAGACC 62.177 72.222 0.00 0.00 39.50 3.85
1096 1150 4.517703 GCGACGAGACCGAGACCG 62.518 72.222 0.00 0.00 39.50 4.79
1297 1351 1.443872 GTCAACGCCGACATCGTCT 60.444 57.895 0.00 0.00 39.48 4.18
1932 1986 3.080765 ATCGTCCCCATCGCCACA 61.081 61.111 0.00 0.00 0.00 4.17
2126 2185 6.374565 AGTACACCGTATATCTGTTCAGTC 57.625 41.667 0.00 0.00 0.00 3.51
2132 2191 8.255206 ACACCGTATATCTGTTCAGTCAATTTA 58.745 33.333 0.00 0.00 0.00 1.40
2184 2243 3.693085 GTGCATGAGATGAGATTTGGTGT 59.307 43.478 0.00 0.00 0.00 4.16
2200 2259 1.490621 GTGTGTGGATTTGTTGCTGC 58.509 50.000 0.00 0.00 0.00 5.25
2242 2301 4.431131 GCTTGCAGCTGGGGCCTA 62.431 66.667 17.12 0.00 38.45 3.93
2277 2336 7.425595 GCAGCGTTAAATTCAGAACATAAGTAC 59.574 37.037 0.00 0.00 0.00 2.73
2281 2340 9.146984 CGTTAAATTCAGAACATAAGTACCTGA 57.853 33.333 0.00 0.00 36.45 3.86
2285 2344 8.723942 AATTCAGAACATAAGTACCTGATCAC 57.276 34.615 0.00 0.00 37.39 3.06
2286 2345 7.482169 TTCAGAACATAAGTACCTGATCACT 57.518 36.000 0.00 0.00 37.39 3.41
2287 2346 6.867550 TCAGAACATAAGTACCTGATCACTG 58.132 40.000 0.00 0.00 34.63 3.66
2288 2347 6.437477 TCAGAACATAAGTACCTGATCACTGT 59.563 38.462 0.00 0.00 34.63 3.55
2298 2357 3.008375 ACCTGATCACTGTACAGCACAAT 59.992 43.478 22.90 10.70 36.48 2.71
2347 2406 7.500227 TGGCTACCTATCATCATTTTCTTCTTG 59.500 37.037 0.00 0.00 0.00 3.02
2483 2550 1.673665 GCAGAGACAACAGGGCCAG 60.674 63.158 6.18 0.00 0.00 4.85
2606 2674 6.094603 GGAGAGAATTGCTGCTTTCTTATTCA 59.905 38.462 15.94 0.00 32.46 2.57
2611 2679 5.362556 TTGCTGCTTTCTTATTCACAGTC 57.637 39.130 0.00 0.00 0.00 3.51
2678 2820 7.768120 CAGCTCTCCTGTATCTTCACTAATTTT 59.232 37.037 0.00 0.00 36.79 1.82
2680 2822 7.984617 GCTCTCCTGTATCTTCACTAATTTTCT 59.015 37.037 0.00 0.00 0.00 2.52
2690 2832 7.095270 TCTTCACTAATTTTCTCGGTAGGTTC 58.905 38.462 0.00 0.00 0.00 3.62
2692 2834 5.482878 TCACTAATTTTCTCGGTAGGTTCCT 59.517 40.000 0.00 0.00 0.00 3.36
2693 2835 5.581085 CACTAATTTTCTCGGTAGGTTCCTG 59.419 44.000 1.12 0.00 0.00 3.86
2694 2836 4.635699 AATTTTCTCGGTAGGTTCCTGT 57.364 40.909 1.12 0.00 0.00 4.00
2696 2838 5.750352 ATTTTCTCGGTAGGTTCCTGTTA 57.250 39.130 1.12 0.00 0.00 2.41
2697 2839 5.549742 TTTTCTCGGTAGGTTCCTGTTAA 57.450 39.130 1.12 0.00 0.00 2.01
2700 2842 2.167900 CTCGGTAGGTTCCTGTTAAGGG 59.832 54.545 1.12 0.00 44.62 3.95
2701 2843 2.181975 CGGTAGGTTCCTGTTAAGGGA 58.818 52.381 1.12 0.00 44.62 4.20
2702 2844 2.167900 CGGTAGGTTCCTGTTAAGGGAG 59.832 54.545 1.12 0.00 44.62 4.30
2710 2852 4.447138 TCCTGTTAAGGGAGCAAAGAAA 57.553 40.909 0.00 0.00 44.62 2.52
2711 2853 4.798882 TCCTGTTAAGGGAGCAAAGAAAA 58.201 39.130 0.00 0.00 44.62 2.29
2712 2854 4.583073 TCCTGTTAAGGGAGCAAAGAAAAC 59.417 41.667 0.00 0.00 44.62 2.43
2713 2855 4.262036 CCTGTTAAGGGAGCAAAGAAAACC 60.262 45.833 0.00 0.00 40.27 3.27
2717 2859 0.318441 GGGAGCAAAGAAAACCCTGC 59.682 55.000 0.00 0.00 37.75 4.85
2719 2861 2.514803 GGAGCAAAGAAAACCCTGCTA 58.485 47.619 0.00 0.00 44.93 3.49
2720 2862 3.092301 GGAGCAAAGAAAACCCTGCTAT 58.908 45.455 0.00 0.00 44.93 2.97
2721 2863 3.129462 GGAGCAAAGAAAACCCTGCTATC 59.871 47.826 0.00 0.00 44.93 2.08
2722 2864 3.092301 AGCAAAGAAAACCCTGCTATCC 58.908 45.455 0.00 0.00 43.17 2.59
2723 2865 3.092301 GCAAAGAAAACCCTGCTATCCT 58.908 45.455 0.00 0.00 0.00 3.24
2725 2867 2.990066 AGAAAACCCTGCTATCCTCG 57.010 50.000 0.00 0.00 0.00 4.63
2726 2868 2.188817 AGAAAACCCTGCTATCCTCGT 58.811 47.619 0.00 0.00 0.00 4.18
2727 2869 2.168728 AGAAAACCCTGCTATCCTCGTC 59.831 50.000 0.00 0.00 0.00 4.20
2728 2870 0.831307 AAACCCTGCTATCCTCGTCC 59.169 55.000 0.00 0.00 0.00 4.79
2730 2872 0.757188 ACCCTGCTATCCTCGTCCAG 60.757 60.000 0.00 0.00 0.00 3.86
2731 2873 0.468214 CCCTGCTATCCTCGTCCAGA 60.468 60.000 0.00 0.00 0.00 3.86
2732 2874 0.958091 CCTGCTATCCTCGTCCAGAG 59.042 60.000 0.00 0.00 46.44 3.35
2766 3447 3.960102 AGCCAAGAACCAAATGAACTTCA 59.040 39.130 0.00 0.00 0.00 3.02
2870 3551 6.804677 AGTTCAATCTGTGCATTTGTTTGTA 58.195 32.000 0.00 0.00 0.00 2.41
2874 3555 6.917477 TCAATCTGTGCATTTGTTTGTACTTC 59.083 34.615 0.00 0.00 33.87 3.01
2889 3570 7.654520 TGTTTGTACTTCGTAGAATTACTGCTT 59.345 33.333 0.00 0.00 45.90 3.91
2904 3585 6.668541 TTACTGCTTTCTTATCATCACTGC 57.331 37.500 0.00 0.00 0.00 4.40
2930 3611 7.667043 TTTAGGAATGCAGTGTGTACTTAAG 57.333 36.000 0.00 0.00 34.07 1.85
2936 3617 7.010552 GGAATGCAGTGTGTACTTAAGTATCAG 59.989 40.741 18.03 10.58 34.07 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.558973 TCATCTTCAATCTTCTCTTTTTCCTC 57.441 34.615 0.00 0.00 0.00 3.71
1 2 8.930846 TTCATCTTCAATCTTCTCTTTTTCCT 57.069 30.769 0.00 0.00 0.00 3.36
2 3 9.007901 TCTTCATCTTCAATCTTCTCTTTTTCC 57.992 33.333 0.00 0.00 0.00 3.13
4 5 9.012161 CCTCTTCATCTTCAATCTTCTCTTTTT 57.988 33.333 0.00 0.00 0.00 1.94
5 6 7.121020 GCCTCTTCATCTTCAATCTTCTCTTTT 59.879 37.037 0.00 0.00 0.00 2.27
6 7 6.598850 GCCTCTTCATCTTCAATCTTCTCTTT 59.401 38.462 0.00 0.00 0.00 2.52
7 8 6.114767 GCCTCTTCATCTTCAATCTTCTCTT 58.885 40.000 0.00 0.00 0.00 2.85
8 9 5.189342 TGCCTCTTCATCTTCAATCTTCTCT 59.811 40.000 0.00 0.00 0.00 3.10
9 10 5.426504 TGCCTCTTCATCTTCAATCTTCTC 58.573 41.667 0.00 0.00 0.00 2.87
10 11 5.430007 CTGCCTCTTCATCTTCAATCTTCT 58.570 41.667 0.00 0.00 0.00 2.85
11 12 4.035441 GCTGCCTCTTCATCTTCAATCTTC 59.965 45.833 0.00 0.00 0.00 2.87
12 13 3.946558 GCTGCCTCTTCATCTTCAATCTT 59.053 43.478 0.00 0.00 0.00 2.40
13 14 3.543665 GCTGCCTCTTCATCTTCAATCT 58.456 45.455 0.00 0.00 0.00 2.40
14 15 2.617774 GGCTGCCTCTTCATCTTCAATC 59.382 50.000 12.43 0.00 0.00 2.67
15 16 2.652590 GGCTGCCTCTTCATCTTCAAT 58.347 47.619 12.43 0.00 0.00 2.57
16 17 1.676916 CGGCTGCCTCTTCATCTTCAA 60.677 52.381 17.92 0.00 0.00 2.69
17 18 0.107993 CGGCTGCCTCTTCATCTTCA 60.108 55.000 17.92 0.00 0.00 3.02
18 19 0.813210 CCGGCTGCCTCTTCATCTTC 60.813 60.000 17.92 0.00 0.00 2.87
19 20 1.222936 CCGGCTGCCTCTTCATCTT 59.777 57.895 17.92 0.00 0.00 2.40
20 21 1.684386 CTCCGGCTGCCTCTTCATCT 61.684 60.000 17.92 0.00 0.00 2.90
21 22 1.227497 CTCCGGCTGCCTCTTCATC 60.227 63.158 17.92 0.00 0.00 2.92
22 23 1.267574 TTCTCCGGCTGCCTCTTCAT 61.268 55.000 17.92 0.00 0.00 2.57
23 24 1.480212 TTTCTCCGGCTGCCTCTTCA 61.480 55.000 17.92 0.00 0.00 3.02
24 25 0.321653 TTTTCTCCGGCTGCCTCTTC 60.322 55.000 17.92 0.00 0.00 2.87
25 26 0.329596 ATTTTCTCCGGCTGCCTCTT 59.670 50.000 17.92 0.00 0.00 2.85
26 27 1.204146 TATTTTCTCCGGCTGCCTCT 58.796 50.000 17.92 0.00 0.00 3.69
27 28 2.262423 ATATTTTCTCCGGCTGCCTC 57.738 50.000 17.92 0.00 0.00 4.70
28 29 2.689983 CAAATATTTTCTCCGGCTGCCT 59.310 45.455 17.92 0.00 0.00 4.75
29 30 2.427095 ACAAATATTTTCTCCGGCTGCC 59.573 45.455 9.11 9.11 0.00 4.85
30 31 3.782889 ACAAATATTTTCTCCGGCTGC 57.217 42.857 0.00 0.00 0.00 5.25
31 32 5.309323 TGAACAAATATTTTCTCCGGCTG 57.691 39.130 0.00 0.00 0.00 4.85
32 33 5.418840 ACATGAACAAATATTTTCTCCGGCT 59.581 36.000 0.00 0.00 0.00 5.52
33 34 5.516339 CACATGAACAAATATTTTCTCCGGC 59.484 40.000 0.00 0.00 0.00 6.13
34 35 5.516339 GCACATGAACAAATATTTTCTCCGG 59.484 40.000 0.00 0.00 0.00 5.14
35 36 6.092092 TGCACATGAACAAATATTTTCTCCG 58.908 36.000 0.00 0.00 0.00 4.63
36 37 7.887996 TTGCACATGAACAAATATTTTCTCC 57.112 32.000 0.00 0.00 0.00 3.71
37 38 9.142515 TCATTGCACATGAACAAATATTTTCTC 57.857 29.630 0.00 0.00 0.00 2.87
38 39 9.146984 CTCATTGCACATGAACAAATATTTTCT 57.853 29.630 0.00 0.00 0.00 2.52
39 40 8.385111 CCTCATTGCACATGAACAAATATTTTC 58.615 33.333 0.00 0.00 0.00 2.29
40 41 8.095792 TCCTCATTGCACATGAACAAATATTTT 58.904 29.630 0.00 0.00 0.00 1.82
41 42 7.613585 TCCTCATTGCACATGAACAAATATTT 58.386 30.769 0.00 0.00 0.00 1.40
42 43 7.123098 TCTCCTCATTGCACATGAACAAATATT 59.877 33.333 0.00 0.00 0.00 1.28
43 44 6.604396 TCTCCTCATTGCACATGAACAAATAT 59.396 34.615 0.00 0.00 0.00 1.28
44 45 5.945191 TCTCCTCATTGCACATGAACAAATA 59.055 36.000 0.00 0.00 0.00 1.40
45 46 4.768448 TCTCCTCATTGCACATGAACAAAT 59.232 37.500 0.00 0.00 0.00 2.32
46 47 4.143543 TCTCCTCATTGCACATGAACAAA 58.856 39.130 0.00 0.00 0.00 2.83
47 48 3.753815 TCTCCTCATTGCACATGAACAA 58.246 40.909 0.00 3.44 0.00 2.83
48 49 3.421919 TCTCCTCATTGCACATGAACA 57.578 42.857 0.00 0.00 0.00 3.18
49 50 7.734924 TTATATCTCCTCATTGCACATGAAC 57.265 36.000 0.00 0.00 0.00 3.18
50 51 7.392393 CCATTATATCTCCTCATTGCACATGAA 59.608 37.037 0.00 0.00 0.00 2.57
51 52 6.882678 CCATTATATCTCCTCATTGCACATGA 59.117 38.462 0.00 10.01 0.00 3.07
52 53 6.095021 CCCATTATATCTCCTCATTGCACATG 59.905 42.308 0.00 0.00 0.00 3.21
53 54 6.012245 TCCCATTATATCTCCTCATTGCACAT 60.012 38.462 0.00 0.00 0.00 3.21
54 55 5.310331 TCCCATTATATCTCCTCATTGCACA 59.690 40.000 0.00 0.00 0.00 4.57
55 56 5.809001 TCCCATTATATCTCCTCATTGCAC 58.191 41.667 0.00 0.00 0.00 4.57
56 57 5.572271 GCTCCCATTATATCTCCTCATTGCA 60.572 44.000 0.00 0.00 0.00 4.08
57 58 4.880696 GCTCCCATTATATCTCCTCATTGC 59.119 45.833 0.00 0.00 0.00 3.56
58 59 5.114780 CGCTCCCATTATATCTCCTCATTG 58.885 45.833 0.00 0.00 0.00 2.82
59 60 4.383552 GCGCTCCCATTATATCTCCTCATT 60.384 45.833 0.00 0.00 0.00 2.57
60 61 3.133721 GCGCTCCCATTATATCTCCTCAT 59.866 47.826 0.00 0.00 0.00 2.90
61 62 2.497675 GCGCTCCCATTATATCTCCTCA 59.502 50.000 0.00 0.00 0.00 3.86
62 63 2.763448 AGCGCTCCCATTATATCTCCTC 59.237 50.000 2.64 0.00 0.00 3.71
63 64 2.499289 CAGCGCTCCCATTATATCTCCT 59.501 50.000 7.13 0.00 0.00 3.69
64 65 2.419297 CCAGCGCTCCCATTATATCTCC 60.419 54.545 7.13 0.00 0.00 3.71
65 66 2.898705 CCAGCGCTCCCATTATATCTC 58.101 52.381 7.13 0.00 0.00 2.75
66 67 1.065854 GCCAGCGCTCCCATTATATCT 60.066 52.381 7.13 0.00 0.00 1.98
67 68 1.373570 GCCAGCGCTCCCATTATATC 58.626 55.000 7.13 0.00 0.00 1.63
68 69 0.035056 GGCCAGCGCTCCCATTATAT 60.035 55.000 7.13 0.00 34.44 0.86
69 70 1.374947 GGCCAGCGCTCCCATTATA 59.625 57.895 7.13 0.00 34.44 0.98
70 71 2.113986 GGCCAGCGCTCCCATTAT 59.886 61.111 7.13 0.00 34.44 1.28
71 72 4.545706 CGGCCAGCGCTCCCATTA 62.546 66.667 20.24 0.00 34.44 1.90
87 88 0.100682 CCTACAGACATCCGTCCACG 59.899 60.000 0.00 0.00 43.73 4.94
88 89 1.183549 ACCTACAGACATCCGTCCAC 58.816 55.000 0.00 0.00 43.73 4.02
89 90 2.651455 CTACCTACAGACATCCGTCCA 58.349 52.381 0.00 0.00 43.73 4.02
90 91 1.337387 GCTACCTACAGACATCCGTCC 59.663 57.143 0.00 0.00 43.73 4.79
91 92 1.002684 CGCTACCTACAGACATCCGTC 60.003 57.143 0.00 0.00 42.95 4.79
92 93 1.022735 CGCTACCTACAGACATCCGT 58.977 55.000 0.00 0.00 0.00 4.69
93 94 0.311165 CCGCTACCTACAGACATCCG 59.689 60.000 0.00 0.00 0.00 4.18
94 95 1.688772 TCCGCTACCTACAGACATCC 58.311 55.000 0.00 0.00 0.00 3.51
95 96 3.570550 AGATTCCGCTACCTACAGACATC 59.429 47.826 0.00 0.00 0.00 3.06
96 97 3.567397 AGATTCCGCTACCTACAGACAT 58.433 45.455 0.00 0.00 0.00 3.06
97 98 3.014304 AGATTCCGCTACCTACAGACA 57.986 47.619 0.00 0.00 0.00 3.41
98 99 4.388378 AAAGATTCCGCTACCTACAGAC 57.612 45.455 0.00 0.00 0.00 3.51
99 100 5.416271 AAAAAGATTCCGCTACCTACAGA 57.584 39.130 0.00 0.00 0.00 3.41
100 101 5.231568 CGTAAAAAGATTCCGCTACCTACAG 59.768 44.000 0.00 0.00 0.00 2.74
101 102 5.104374 CGTAAAAAGATTCCGCTACCTACA 58.896 41.667 0.00 0.00 0.00 2.74
102 103 5.005107 CACGTAAAAAGATTCCGCTACCTAC 59.995 44.000 0.00 0.00 0.00 3.18
103 104 5.104374 CACGTAAAAAGATTCCGCTACCTA 58.896 41.667 0.00 0.00 0.00 3.08
104 105 3.930848 CACGTAAAAAGATTCCGCTACCT 59.069 43.478 0.00 0.00 0.00 3.08
105 106 3.063045 CCACGTAAAAAGATTCCGCTACC 59.937 47.826 0.00 0.00 0.00 3.18
106 107 3.063045 CCCACGTAAAAAGATTCCGCTAC 59.937 47.826 0.00 0.00 0.00 3.58
107 108 3.055963 TCCCACGTAAAAAGATTCCGCTA 60.056 43.478 0.00 0.00 0.00 4.26
108 109 2.081462 CCCACGTAAAAAGATTCCGCT 58.919 47.619 0.00 0.00 0.00 5.52
109 110 2.078392 TCCCACGTAAAAAGATTCCGC 58.922 47.619 0.00 0.00 0.00 5.54
110 111 3.998341 TCTTCCCACGTAAAAAGATTCCG 59.002 43.478 0.00 0.00 0.00 4.30
111 112 5.243207 TCTCTTCCCACGTAAAAAGATTCC 58.757 41.667 6.25 0.00 0.00 3.01
112 113 6.796705 TTCTCTTCCCACGTAAAAAGATTC 57.203 37.500 6.25 0.00 0.00 2.52
113 114 6.206829 CCTTTCTCTTCCCACGTAAAAAGATT 59.793 38.462 6.25 0.00 0.00 2.40
114 115 5.705905 CCTTTCTCTTCCCACGTAAAAAGAT 59.294 40.000 6.25 0.00 0.00 2.40
115 116 5.061179 CCTTTCTCTTCCCACGTAAAAAGA 58.939 41.667 0.00 0.00 0.00 2.52
116 117 4.320275 GCCTTTCTCTTCCCACGTAAAAAG 60.320 45.833 0.00 0.00 0.00 2.27
117 118 3.566742 GCCTTTCTCTTCCCACGTAAAAA 59.433 43.478 0.00 0.00 0.00 1.94
118 119 3.143728 GCCTTTCTCTTCCCACGTAAAA 58.856 45.455 0.00 0.00 0.00 1.52
119 120 2.370849 AGCCTTTCTCTTCCCACGTAAA 59.629 45.455 0.00 0.00 0.00 2.01
120 121 1.975680 AGCCTTTCTCTTCCCACGTAA 59.024 47.619 0.00 0.00 0.00 3.18
121 122 1.275291 CAGCCTTTCTCTTCCCACGTA 59.725 52.381 0.00 0.00 0.00 3.57
122 123 0.035458 CAGCCTTTCTCTTCCCACGT 59.965 55.000 0.00 0.00 0.00 4.49
123 124 0.035458 ACAGCCTTTCTCTTCCCACG 59.965 55.000 0.00 0.00 0.00 4.94
124 125 1.882623 CAACAGCCTTTCTCTTCCCAC 59.117 52.381 0.00 0.00 0.00 4.61
125 126 1.202927 CCAACAGCCTTTCTCTTCCCA 60.203 52.381 0.00 0.00 0.00 4.37
126 127 1.539157 CCAACAGCCTTTCTCTTCCC 58.461 55.000 0.00 0.00 0.00 3.97
127 128 1.539157 CCCAACAGCCTTTCTCTTCC 58.461 55.000 0.00 0.00 0.00 3.46
128 129 0.884514 GCCCAACAGCCTTTCTCTTC 59.115 55.000 0.00 0.00 0.00 2.87
129 130 0.480252 AGCCCAACAGCCTTTCTCTT 59.520 50.000 0.00 0.00 0.00 2.85
130 131 0.037447 GAGCCCAACAGCCTTTCTCT 59.963 55.000 0.00 0.00 0.00 3.10
131 132 0.037447 AGAGCCCAACAGCCTTTCTC 59.963 55.000 0.00 0.00 0.00 2.87
132 133 0.480252 AAGAGCCCAACAGCCTTTCT 59.520 50.000 0.00 0.00 0.00 2.52
133 134 1.813178 GTAAGAGCCCAACAGCCTTTC 59.187 52.381 0.00 0.00 0.00 2.62
134 135 1.425448 AGTAAGAGCCCAACAGCCTTT 59.575 47.619 0.00 0.00 0.00 3.11
135 136 1.068121 AGTAAGAGCCCAACAGCCTT 58.932 50.000 0.00 0.00 0.00 4.35
136 137 1.952621 TAGTAAGAGCCCAACAGCCT 58.047 50.000 0.00 0.00 0.00 4.58
137 138 2.945668 CAATAGTAAGAGCCCAACAGCC 59.054 50.000 0.00 0.00 0.00 4.85
138 139 2.945668 CCAATAGTAAGAGCCCAACAGC 59.054 50.000 0.00 0.00 0.00 4.40
139 140 4.487714 TCCAATAGTAAGAGCCCAACAG 57.512 45.455 0.00 0.00 0.00 3.16
140 141 4.919774 TTCCAATAGTAAGAGCCCAACA 57.080 40.909 0.00 0.00 0.00 3.33
141 142 4.094442 CGTTTCCAATAGTAAGAGCCCAAC 59.906 45.833 0.00 0.00 0.00 3.77
142 143 4.258543 CGTTTCCAATAGTAAGAGCCCAA 58.741 43.478 0.00 0.00 0.00 4.12
143 144 3.370103 CCGTTTCCAATAGTAAGAGCCCA 60.370 47.826 0.00 0.00 0.00 5.36
144 145 3.118519 TCCGTTTCCAATAGTAAGAGCCC 60.119 47.826 0.00 0.00 0.00 5.19
145 146 4.133013 TCCGTTTCCAATAGTAAGAGCC 57.867 45.455 0.00 0.00 0.00 4.70
146 147 4.034163 GCTTCCGTTTCCAATAGTAAGAGC 59.966 45.833 0.00 0.00 0.00 4.09
147 148 5.063564 GTGCTTCCGTTTCCAATAGTAAGAG 59.936 44.000 0.00 0.00 0.00 2.85
148 149 4.933400 GTGCTTCCGTTTCCAATAGTAAGA 59.067 41.667 0.00 0.00 0.00 2.10
149 150 4.935808 AGTGCTTCCGTTTCCAATAGTAAG 59.064 41.667 0.00 0.00 0.00 2.34
150 151 4.901868 AGTGCTTCCGTTTCCAATAGTAA 58.098 39.130 0.00 0.00 0.00 2.24
151 152 4.546829 AGTGCTTCCGTTTCCAATAGTA 57.453 40.909 0.00 0.00 0.00 1.82
152 153 3.418684 AGTGCTTCCGTTTCCAATAGT 57.581 42.857 0.00 0.00 0.00 2.12
153 154 5.584649 TCATTAGTGCTTCCGTTTCCAATAG 59.415 40.000 0.00 0.00 0.00 1.73
154 155 5.353123 GTCATTAGTGCTTCCGTTTCCAATA 59.647 40.000 0.00 0.00 0.00 1.90
155 156 4.156008 GTCATTAGTGCTTCCGTTTCCAAT 59.844 41.667 0.00 0.00 0.00 3.16
156 157 3.500680 GTCATTAGTGCTTCCGTTTCCAA 59.499 43.478 0.00 0.00 0.00 3.53
157 158 3.071479 GTCATTAGTGCTTCCGTTTCCA 58.929 45.455 0.00 0.00 0.00 3.53
158 159 3.125316 CAGTCATTAGTGCTTCCGTTTCC 59.875 47.826 0.00 0.00 0.00 3.13
159 160 3.746492 ACAGTCATTAGTGCTTCCGTTTC 59.254 43.478 0.00 0.00 0.00 2.78
160 161 3.740115 ACAGTCATTAGTGCTTCCGTTT 58.260 40.909 0.00 0.00 0.00 3.60
161 162 3.402628 ACAGTCATTAGTGCTTCCGTT 57.597 42.857 0.00 0.00 0.00 4.44
162 163 3.402628 AACAGTCATTAGTGCTTCCGT 57.597 42.857 0.00 0.00 0.00 4.69
163 164 4.495422 AGTAACAGTCATTAGTGCTTCCG 58.505 43.478 0.00 0.00 0.00 4.30
164 165 5.725362 AGAGTAACAGTCATTAGTGCTTCC 58.275 41.667 0.00 0.00 0.00 3.46
165 166 6.034044 CGAAGAGTAACAGTCATTAGTGCTTC 59.966 42.308 0.00 0.00 0.00 3.86
166 167 5.864474 CGAAGAGTAACAGTCATTAGTGCTT 59.136 40.000 0.00 0.00 0.00 3.91
167 168 5.403246 CGAAGAGTAACAGTCATTAGTGCT 58.597 41.667 0.00 0.00 0.00 4.40
168 169 4.563184 CCGAAGAGTAACAGTCATTAGTGC 59.437 45.833 0.00 0.00 0.00 4.40
169 170 5.950883 TCCGAAGAGTAACAGTCATTAGTG 58.049 41.667 0.00 0.00 0.00 2.74
170 171 6.377429 TGATCCGAAGAGTAACAGTCATTAGT 59.623 38.462 0.00 0.00 0.00 2.24
171 172 6.693545 GTGATCCGAAGAGTAACAGTCATTAG 59.306 42.308 0.00 0.00 0.00 1.73
172 173 6.405508 GGTGATCCGAAGAGTAACAGTCATTA 60.406 42.308 0.00 0.00 0.00 1.90
173 174 5.411781 GTGATCCGAAGAGTAACAGTCATT 58.588 41.667 0.00 0.00 0.00 2.57
174 175 4.142138 GGTGATCCGAAGAGTAACAGTCAT 60.142 45.833 0.00 0.00 0.00 3.06
175 176 3.192844 GGTGATCCGAAGAGTAACAGTCA 59.807 47.826 0.00 0.00 0.00 3.41
176 177 3.192844 TGGTGATCCGAAGAGTAACAGTC 59.807 47.826 0.00 0.00 36.30 3.51
177 178 3.162666 TGGTGATCCGAAGAGTAACAGT 58.837 45.455 0.00 0.00 36.30 3.55
178 179 3.868757 TGGTGATCCGAAGAGTAACAG 57.131 47.619 0.00 0.00 36.30 3.16
179 180 4.221924 TCAATGGTGATCCGAAGAGTAACA 59.778 41.667 0.00 0.00 36.30 2.41
180 181 4.755411 TCAATGGTGATCCGAAGAGTAAC 58.245 43.478 0.00 0.00 36.30 2.50
181 182 4.141937 CCTCAATGGTGATCCGAAGAGTAA 60.142 45.833 0.00 0.00 36.30 2.24
182 183 3.384789 CCTCAATGGTGATCCGAAGAGTA 59.615 47.826 0.00 0.00 36.30 2.59
183 184 2.169352 CCTCAATGGTGATCCGAAGAGT 59.831 50.000 0.00 0.00 36.30 3.24
184 185 2.831333 CCTCAATGGTGATCCGAAGAG 58.169 52.381 0.00 0.00 36.30 2.85
185 186 1.134401 GCCTCAATGGTGATCCGAAGA 60.134 52.381 0.00 0.00 38.35 2.87
186 187 1.134280 AGCCTCAATGGTGATCCGAAG 60.134 52.381 0.00 0.00 38.35 3.79
187 188 0.911769 AGCCTCAATGGTGATCCGAA 59.088 50.000 0.00 0.00 38.35 4.30
188 189 0.178767 CAGCCTCAATGGTGATCCGA 59.821 55.000 0.00 0.00 38.35 4.55
189 190 0.107508 ACAGCCTCAATGGTGATCCG 60.108 55.000 0.00 0.00 38.35 4.18
190 191 2.019984 GAACAGCCTCAATGGTGATCC 58.980 52.381 0.00 0.00 38.35 3.36
191 192 1.667724 CGAACAGCCTCAATGGTGATC 59.332 52.381 0.00 0.00 38.35 2.92
192 193 1.003580 ACGAACAGCCTCAATGGTGAT 59.996 47.619 0.00 0.00 38.35 3.06
193 194 0.396435 ACGAACAGCCTCAATGGTGA 59.604 50.000 0.00 0.00 38.35 4.02
194 195 1.238439 AACGAACAGCCTCAATGGTG 58.762 50.000 0.00 0.00 38.35 4.17
195 196 1.880027 GAAACGAACAGCCTCAATGGT 59.120 47.619 0.00 0.00 38.35 3.55
196 197 2.095567 CAGAAACGAACAGCCTCAATGG 60.096 50.000 0.00 0.00 39.35 3.16
197 198 2.666619 GCAGAAACGAACAGCCTCAATG 60.667 50.000 0.00 0.00 0.00 2.82
198 199 1.537202 GCAGAAACGAACAGCCTCAAT 59.463 47.619 0.00 0.00 0.00 2.57
199 200 0.944386 GCAGAAACGAACAGCCTCAA 59.056 50.000 0.00 0.00 0.00 3.02
200 201 0.106708 AGCAGAAACGAACAGCCTCA 59.893 50.000 0.00 0.00 0.00 3.86
201 202 1.069636 CAAGCAGAAACGAACAGCCTC 60.070 52.381 0.00 0.00 0.00 4.70
202 203 0.947244 CAAGCAGAAACGAACAGCCT 59.053 50.000 0.00 0.00 0.00 4.58
203 204 0.661483 GCAAGCAGAAACGAACAGCC 60.661 55.000 0.00 0.00 0.00 4.85
204 205 0.993746 CGCAAGCAGAAACGAACAGC 60.994 55.000 0.00 0.00 0.00 4.40
205 206 3.062786 CGCAAGCAGAAACGAACAG 57.937 52.632 0.00 0.00 0.00 3.16
218 219 3.688272 CTTCCTTGAATACATGCGCAAG 58.312 45.455 17.11 14.15 37.93 4.01
219 220 2.159393 GCTTCCTTGAATACATGCGCAA 60.159 45.455 17.11 0.00 0.00 4.85
220 221 1.401552 GCTTCCTTGAATACATGCGCA 59.598 47.619 14.96 14.96 0.00 6.09
221 222 1.672881 AGCTTCCTTGAATACATGCGC 59.327 47.619 0.00 0.00 0.00 6.09
222 223 2.540361 GCAGCTTCCTTGAATACATGCG 60.540 50.000 0.00 0.00 0.00 4.73
223 224 2.686915 AGCAGCTTCCTTGAATACATGC 59.313 45.455 0.00 0.00 0.00 4.06
224 225 3.943381 TCAGCAGCTTCCTTGAATACATG 59.057 43.478 0.00 0.00 0.00 3.21
225 226 3.944015 GTCAGCAGCTTCCTTGAATACAT 59.056 43.478 0.00 0.00 0.00 2.29
226 227 3.338249 GTCAGCAGCTTCCTTGAATACA 58.662 45.455 0.00 0.00 0.00 2.29
227 228 2.349886 CGTCAGCAGCTTCCTTGAATAC 59.650 50.000 0.00 0.00 0.00 1.89
228 229 2.028112 ACGTCAGCAGCTTCCTTGAATA 60.028 45.455 0.00 0.00 0.00 1.75
229 230 1.271054 ACGTCAGCAGCTTCCTTGAAT 60.271 47.619 0.00 0.00 0.00 2.57
230 231 0.106708 ACGTCAGCAGCTTCCTTGAA 59.893 50.000 0.00 0.00 0.00 2.69
231 232 0.601046 CACGTCAGCAGCTTCCTTGA 60.601 55.000 0.00 0.00 0.00 3.02
232 233 1.572085 CCACGTCAGCAGCTTCCTTG 61.572 60.000 0.00 0.00 0.00 3.61
233 234 1.302033 CCACGTCAGCAGCTTCCTT 60.302 57.895 0.00 0.00 0.00 3.36
234 235 2.345244 CCACGTCAGCAGCTTCCT 59.655 61.111 0.00 0.00 0.00 3.36
235 236 3.426568 GCCACGTCAGCAGCTTCC 61.427 66.667 0.00 0.00 0.00 3.46
236 237 1.963338 AAGCCACGTCAGCAGCTTC 60.963 57.895 9.59 0.00 41.60 3.86
237 238 2.111878 AAGCCACGTCAGCAGCTT 59.888 55.556 9.59 5.37 40.63 3.74
238 239 2.099652 TACAAGCCACGTCAGCAGCT 62.100 55.000 9.59 0.00 37.10 4.24
239 240 1.630244 CTACAAGCCACGTCAGCAGC 61.630 60.000 9.59 0.00 0.00 5.25
240 241 1.016130 CCTACAAGCCACGTCAGCAG 61.016 60.000 9.59 4.37 0.00 4.24
241 242 1.005037 CCTACAAGCCACGTCAGCA 60.005 57.895 9.59 0.00 0.00 4.41
242 243 2.391389 GCCTACAAGCCACGTCAGC 61.391 63.158 0.00 0.00 0.00 4.26
243 244 1.016130 CAGCCTACAAGCCACGTCAG 61.016 60.000 0.00 0.00 0.00 3.51
244 245 1.005037 CAGCCTACAAGCCACGTCA 60.005 57.895 0.00 0.00 0.00 4.35
245 246 0.108138 ATCAGCCTACAAGCCACGTC 60.108 55.000 0.00 0.00 0.00 4.34
246 247 0.108138 GATCAGCCTACAAGCCACGT 60.108 55.000 0.00 0.00 0.00 4.49
247 248 0.176680 AGATCAGCCTACAAGCCACG 59.823 55.000 0.00 0.00 0.00 4.94
248 249 1.661341 CAGATCAGCCTACAAGCCAC 58.339 55.000 0.00 0.00 0.00 5.01
249 250 0.543277 CCAGATCAGCCTACAAGCCA 59.457 55.000 0.00 0.00 0.00 4.75
250 251 0.833287 TCCAGATCAGCCTACAAGCC 59.167 55.000 0.00 0.00 0.00 4.35
251 252 2.698855 TTCCAGATCAGCCTACAAGC 57.301 50.000 0.00 0.00 0.00 4.01
252 253 4.125703 GTCATTCCAGATCAGCCTACAAG 58.874 47.826 0.00 0.00 0.00 3.16
253 254 3.430790 CGTCATTCCAGATCAGCCTACAA 60.431 47.826 0.00 0.00 0.00 2.41
254 255 2.101415 CGTCATTCCAGATCAGCCTACA 59.899 50.000 0.00 0.00 0.00 2.74
255 256 2.101582 ACGTCATTCCAGATCAGCCTAC 59.898 50.000 0.00 0.00 0.00 3.18
256 257 2.101415 CACGTCATTCCAGATCAGCCTA 59.899 50.000 0.00 0.00 0.00 3.93
257 258 1.134580 CACGTCATTCCAGATCAGCCT 60.135 52.381 0.00 0.00 0.00 4.58
258 259 1.293924 CACGTCATTCCAGATCAGCC 58.706 55.000 0.00 0.00 0.00 4.85
259 260 1.293924 CCACGTCATTCCAGATCAGC 58.706 55.000 0.00 0.00 0.00 4.26
260 261 1.293924 GCCACGTCATTCCAGATCAG 58.706 55.000 0.00 0.00 0.00 2.90
261 262 0.612744 TGCCACGTCATTCCAGATCA 59.387 50.000 0.00 0.00 0.00 2.92
262 263 1.009829 GTGCCACGTCATTCCAGATC 58.990 55.000 0.00 0.00 0.00 2.75
263 264 0.324614 TGTGCCACGTCATTCCAGAT 59.675 50.000 0.00 0.00 0.00 2.90
264 265 0.324614 ATGTGCCACGTCATTCCAGA 59.675 50.000 0.00 0.00 0.00 3.86
265 266 0.729116 GATGTGCCACGTCATTCCAG 59.271 55.000 12.14 0.00 34.36 3.86
266 267 1.018752 CGATGTGCCACGTCATTCCA 61.019 55.000 16.77 0.00 33.83 3.53
267 268 1.715585 CGATGTGCCACGTCATTCC 59.284 57.895 16.77 0.00 33.83 3.01
268 269 1.060937 GCGATGTGCCACGTCATTC 59.939 57.895 16.77 2.11 33.83 2.67
269 270 3.177600 GCGATGTGCCACGTCATT 58.822 55.556 16.77 0.00 33.83 2.57
281 282 1.004595 CACTGTCCACATCAGCGATG 58.995 55.000 14.34 14.34 44.71 3.84
282 283 0.610174 ACACTGTCCACATCAGCGAT 59.390 50.000 0.00 0.00 36.50 4.58
283 284 0.319813 CACACTGTCCACATCAGCGA 60.320 55.000 0.00 0.00 36.50 4.93
284 285 1.904852 GCACACTGTCCACATCAGCG 61.905 60.000 0.00 0.00 36.50 5.18
285 286 0.886043 TGCACACTGTCCACATCAGC 60.886 55.000 0.00 0.00 36.50 4.26
286 287 1.467342 CATGCACACTGTCCACATCAG 59.533 52.381 0.00 0.00 38.68 2.90
287 288 1.525941 CATGCACACTGTCCACATCA 58.474 50.000 0.00 0.00 0.00 3.07
288 289 0.806868 CCATGCACACTGTCCACATC 59.193 55.000 0.00 0.00 0.00 3.06
289 290 0.111061 ACCATGCACACTGTCCACAT 59.889 50.000 0.00 0.00 0.00 3.21
290 291 0.818852 CACCATGCACACTGTCCACA 60.819 55.000 0.00 0.00 0.00 4.17
291 292 0.534877 TCACCATGCACACTGTCCAC 60.535 55.000 0.00 0.00 0.00 4.02
292 293 0.250424 CTCACCATGCACACTGTCCA 60.250 55.000 0.00 0.00 0.00 4.02
293 294 0.035317 TCTCACCATGCACACTGTCC 59.965 55.000 0.00 0.00 0.00 4.02
294 295 1.001293 TCTCTCACCATGCACACTGTC 59.999 52.381 0.00 0.00 0.00 3.51
295 296 1.051008 TCTCTCACCATGCACACTGT 58.949 50.000 0.00 0.00 0.00 3.55
296 297 2.174363 TTCTCTCACCATGCACACTG 57.826 50.000 0.00 0.00 0.00 3.66
297 298 3.118482 CCTATTCTCTCACCATGCACACT 60.118 47.826 0.00 0.00 0.00 3.55
298 299 3.201290 CCTATTCTCTCACCATGCACAC 58.799 50.000 0.00 0.00 0.00 3.82
299 300 2.171237 CCCTATTCTCTCACCATGCACA 59.829 50.000 0.00 0.00 0.00 4.57
300 301 2.435805 TCCCTATTCTCTCACCATGCAC 59.564 50.000 0.00 0.00 0.00 4.57
301 302 2.702478 CTCCCTATTCTCTCACCATGCA 59.298 50.000 0.00 0.00 0.00 3.96
302 303 2.703007 ACTCCCTATTCTCTCACCATGC 59.297 50.000 0.00 0.00 0.00 4.06
303 304 5.010516 CACTACTCCCTATTCTCTCACCATG 59.989 48.000 0.00 0.00 0.00 3.66
304 305 5.144100 CACTACTCCCTATTCTCTCACCAT 58.856 45.833 0.00 0.00 0.00 3.55
305 306 4.537751 CACTACTCCCTATTCTCTCACCA 58.462 47.826 0.00 0.00 0.00 4.17
306 307 3.892588 CCACTACTCCCTATTCTCTCACC 59.107 52.174 0.00 0.00 0.00 4.02
307 308 3.892588 CCCACTACTCCCTATTCTCTCAC 59.107 52.174 0.00 0.00 0.00 3.51
308 309 3.117093 CCCCACTACTCCCTATTCTCTCA 60.117 52.174 0.00 0.00 0.00 3.27
309 310 3.140519 TCCCCACTACTCCCTATTCTCTC 59.859 52.174 0.00 0.00 0.00 3.20
310 311 3.140143 TCCCCACTACTCCCTATTCTCT 58.860 50.000 0.00 0.00 0.00 3.10
311 312 3.502356 CTCCCCACTACTCCCTATTCTC 58.498 54.545 0.00 0.00 0.00 2.87
312 313 2.426561 GCTCCCCACTACTCCCTATTCT 60.427 54.545 0.00 0.00 0.00 2.40
313 314 1.972075 GCTCCCCACTACTCCCTATTC 59.028 57.143 0.00 0.00 0.00 1.75
314 315 1.294068 TGCTCCCCACTACTCCCTATT 59.706 52.381 0.00 0.00 0.00 1.73
315 316 0.941963 TGCTCCCCACTACTCCCTAT 59.058 55.000 0.00 0.00 0.00 2.57
316 317 0.714180 TTGCTCCCCACTACTCCCTA 59.286 55.000 0.00 0.00 0.00 3.53
317 318 0.910088 GTTGCTCCCCACTACTCCCT 60.910 60.000 0.00 0.00 0.00 4.20
318 319 0.910088 AGTTGCTCCCCACTACTCCC 60.910 60.000 0.00 0.00 0.00 4.30
319 320 0.984995 AAGTTGCTCCCCACTACTCC 59.015 55.000 0.00 0.00 0.00 3.85
320 321 1.903183 AGAAGTTGCTCCCCACTACTC 59.097 52.381 0.00 0.00 0.00 2.59
321 322 2.031495 AGAAGTTGCTCCCCACTACT 57.969 50.000 0.00 0.00 0.00 2.57
322 323 2.861147 AAGAAGTTGCTCCCCACTAC 57.139 50.000 0.00 0.00 0.00 2.73
323 324 4.164981 TCTTAAGAAGTTGCTCCCCACTA 58.835 43.478 1.68 0.00 0.00 2.74
324 325 2.979678 TCTTAAGAAGTTGCTCCCCACT 59.020 45.455 1.68 0.00 0.00 4.00
325 326 3.418684 TCTTAAGAAGTTGCTCCCCAC 57.581 47.619 1.68 0.00 0.00 4.61
326 327 4.335416 CATTCTTAAGAAGTTGCTCCCCA 58.665 43.478 21.75 0.00 37.48 4.96
327 328 3.696548 CCATTCTTAAGAAGTTGCTCCCC 59.303 47.826 21.75 0.00 37.48 4.81
328 329 4.336280 ACCATTCTTAAGAAGTTGCTCCC 58.664 43.478 21.75 0.00 37.48 4.30
329 330 6.407202 TCTACCATTCTTAAGAAGTTGCTCC 58.593 40.000 21.75 0.00 37.48 4.70
330 331 8.499403 AATCTACCATTCTTAAGAAGTTGCTC 57.501 34.615 21.75 0.00 37.48 4.26
331 332 8.870075 AAATCTACCATTCTTAAGAAGTTGCT 57.130 30.769 21.75 7.72 37.48 3.91
393 394 7.867909 TCGGATTGCACATTATTAAACAAACAA 59.132 29.630 0.00 0.00 0.00 2.83
416 417 9.227490 TGCATAATAAAATAACAAACGAATCGG 57.773 29.630 7.80 0.00 0.00 4.18
460 461 7.860373 TCAAACGAACACAGATTTCCTATTTTG 59.140 33.333 0.00 0.00 0.00 2.44
464 465 6.072673 GGTTCAAACGAACACAGATTTCCTAT 60.073 38.462 7.56 0.00 43.87 2.57
467 468 4.201970 TGGTTCAAACGAACACAGATTTCC 60.202 41.667 7.56 0.00 43.87 3.13
468 469 4.915704 TGGTTCAAACGAACACAGATTTC 58.084 39.130 7.56 0.00 43.87 2.17
474 475 1.131504 GTGCTGGTTCAAACGAACACA 59.868 47.619 7.56 2.95 43.87 3.72
476 477 0.375454 CGTGCTGGTTCAAACGAACA 59.625 50.000 7.56 0.00 43.87 3.18
477 478 0.375803 ACGTGCTGGTTCAAACGAAC 59.624 50.000 0.57 0.00 41.78 3.95
479 480 0.375454 CAACGTGCTGGTTCAAACGA 59.625 50.000 0.57 0.00 39.27 3.85
488 489 1.507141 GACCAACTCCAACGTGCTGG 61.507 60.000 0.00 0.00 37.87 4.85
491 492 1.529865 GTAAGACCAACTCCAACGTGC 59.470 52.381 0.00 0.00 0.00 5.34
493 494 2.538512 GGTAAGACCAACTCCAACGT 57.461 50.000 0.00 0.00 38.42 3.99
547 548 8.073768 GCAACGCAATAATTTGGTACTGTATAT 58.926 33.333 0.00 0.00 33.22 0.86
548 549 7.411274 GCAACGCAATAATTTGGTACTGTATA 58.589 34.615 0.00 0.00 33.22 1.47
549 550 6.262601 GCAACGCAATAATTTGGTACTGTAT 58.737 36.000 0.00 0.00 33.22 2.29
550 551 5.632959 GCAACGCAATAATTTGGTACTGTA 58.367 37.500 0.00 0.00 33.22 2.74
551 552 4.481463 GCAACGCAATAATTTGGTACTGT 58.519 39.130 0.00 0.00 33.22 3.55
552 553 3.541916 CGCAACGCAATAATTTGGTACTG 59.458 43.478 0.00 0.00 33.22 2.74
553 554 3.437395 TCGCAACGCAATAATTTGGTACT 59.563 39.130 0.00 0.00 33.22 2.73
556 557 2.999507 TCGCAACGCAATAATTTGGT 57.000 40.000 0.00 0.00 33.22 3.67
563 564 1.022451 GGGACCTTCGCAACGCAATA 61.022 55.000 0.00 0.00 0.00 1.90
586 619 0.735471 TCGGATTCTGAGCACGAGAG 59.265 55.000 0.00 0.00 0.00 3.20
594 627 2.042686 TTTGGGCATCGGATTCTGAG 57.957 50.000 1.05 0.00 0.00 3.35
609 642 2.028925 GGCAACGGTGGCTTTTGG 59.971 61.111 21.36 0.00 46.62 3.28
633 666 2.823829 GCAACGGGTCGATGGATGC 61.824 63.158 0.00 0.00 30.57 3.91
748 782 1.522092 GGATGGAGACGGCATCACA 59.478 57.895 0.00 0.00 0.00 3.58
750 784 2.443394 GGGGATGGAGACGGCATCA 61.443 63.158 0.00 0.00 0.00 3.07
764 798 4.974438 AGCCGTTGGTGAGGGGGA 62.974 66.667 0.00 0.00 33.79 4.81
853 890 3.172926 ATTTGGGGGTGTGGGTGGG 62.173 63.158 0.00 0.00 0.00 4.61
854 891 1.609210 GATTTGGGGGTGTGGGTGG 60.609 63.158 0.00 0.00 0.00 4.61
855 892 1.609210 GGATTTGGGGGTGTGGGTG 60.609 63.158 0.00 0.00 0.00 4.61
856 893 2.858655 GGATTTGGGGGTGTGGGT 59.141 61.111 0.00 0.00 0.00 4.51
1091 1145 2.681778 CCTGGGTGAGCTCGGTCT 60.682 66.667 9.64 0.00 0.00 3.85
1092 1146 4.459089 GCCTGGGTGAGCTCGGTC 62.459 72.222 9.64 2.02 0.00 4.79
1095 1149 4.463879 CAGGCCTGGGTGAGCTCG 62.464 72.222 26.14 0.00 0.00 5.03
1096 1150 4.792804 GCAGGCCTGGGTGAGCTC 62.793 72.222 33.46 6.82 0.00 4.09
2126 2185 6.930722 AGCAGATTTTTCAGGGTTGTAAATTG 59.069 34.615 0.00 0.00 0.00 2.32
2132 2191 3.565307 TCAGCAGATTTTTCAGGGTTGT 58.435 40.909 0.00 0.00 0.00 3.32
2184 2243 0.032403 GCAGCAGCAACAAATCCACA 59.968 50.000 0.00 0.00 41.58 4.17
2277 2336 2.749280 TGTGCTGTACAGTGATCAGG 57.251 50.000 23.44 0.00 33.42 3.86
2281 2340 5.163311 TGCCTATATTGTGCTGTACAGTGAT 60.163 40.000 23.44 14.05 41.10 3.06
2282 2341 4.161377 TGCCTATATTGTGCTGTACAGTGA 59.839 41.667 23.44 8.56 41.10 3.41
2284 2343 4.753516 TGCCTATATTGTGCTGTACAGT 57.246 40.909 23.44 6.46 41.10 3.55
2285 2344 4.024556 GCTTGCCTATATTGTGCTGTACAG 60.025 45.833 18.93 18.93 41.10 2.74
2286 2345 3.876914 GCTTGCCTATATTGTGCTGTACA 59.123 43.478 0.00 0.00 37.56 2.90
2287 2346 3.876914 TGCTTGCCTATATTGTGCTGTAC 59.123 43.478 0.00 0.00 0.00 2.90
2288 2347 4.129380 CTGCTTGCCTATATTGTGCTGTA 58.871 43.478 0.00 0.00 0.00 2.74
2298 2357 3.449746 AACAAACCCTGCTTGCCTATA 57.550 42.857 0.00 0.00 0.00 1.31
2347 2406 4.974275 CGCAATTGGATCATCAAATGAGAC 59.026 41.667 7.72 0.00 43.53 3.36
2483 2550 1.216122 GGACTGAATCGCATCTCTGC 58.784 55.000 0.00 0.00 45.31 4.26
2583 2651 6.432162 TGTGAATAAGAAAGCAGCAATTCTCT 59.568 34.615 12.43 7.16 34.90 3.10
2590 2658 3.753272 GGACTGTGAATAAGAAAGCAGCA 59.247 43.478 0.00 0.00 0.00 4.41
2606 2674 2.158813 ACCGAAGTGACAAATGGACTGT 60.159 45.455 0.00 0.00 0.00 3.55
2611 2679 4.935205 TCTTGATACCGAAGTGACAAATGG 59.065 41.667 0.00 0.00 0.00 3.16
2678 2820 3.094572 CCTTAACAGGAACCTACCGAGA 58.905 50.000 0.00 0.00 44.19 4.04
2680 2822 2.181975 CCCTTAACAGGAACCTACCGA 58.818 52.381 0.00 0.00 44.19 4.69
2690 2832 4.262036 GGTTTTCTTTGCTCCCTTAACAGG 60.262 45.833 0.00 0.00 40.45 4.00
2692 2834 3.639561 GGGTTTTCTTTGCTCCCTTAACA 59.360 43.478 0.00 0.00 35.63 2.41
2693 2835 3.895656 AGGGTTTTCTTTGCTCCCTTAAC 59.104 43.478 0.00 0.00 45.19 2.01
2694 2836 3.895041 CAGGGTTTTCTTTGCTCCCTTAA 59.105 43.478 0.00 0.00 45.19 1.85
2696 2838 2.319844 CAGGGTTTTCTTTGCTCCCTT 58.680 47.619 0.00 0.00 45.19 3.95
2700 2842 3.129462 GGATAGCAGGGTTTTCTTTGCTC 59.871 47.826 0.58 0.00 45.04 4.26
2702 2844 3.092301 AGGATAGCAGGGTTTTCTTTGC 58.908 45.455 0.00 0.00 36.83 3.68
2704 2846 3.009143 ACGAGGATAGCAGGGTTTTCTTT 59.991 43.478 0.00 0.00 0.00 2.52
2710 2852 0.325296 TGGACGAGGATAGCAGGGTT 60.325 55.000 0.00 0.00 0.00 4.11
2711 2853 0.757188 CTGGACGAGGATAGCAGGGT 60.757 60.000 0.00 0.00 0.00 4.34
2712 2854 0.468214 TCTGGACGAGGATAGCAGGG 60.468 60.000 0.00 0.00 0.00 4.45
2713 2855 0.958091 CTCTGGACGAGGATAGCAGG 59.042 60.000 0.00 0.00 36.06 4.85
2717 2859 6.712998 TCTCTAAAATCTCTGGACGAGGATAG 59.287 42.308 0.00 0.00 40.30 2.08
2719 2861 5.450453 TCTCTAAAATCTCTGGACGAGGAT 58.550 41.667 0.00 0.00 40.30 3.24
2720 2862 4.856509 TCTCTAAAATCTCTGGACGAGGA 58.143 43.478 0.00 0.00 40.30 3.71
2721 2863 5.782893 ATCTCTAAAATCTCTGGACGAGG 57.217 43.478 0.00 0.00 40.30 4.63
2722 2864 6.378582 GCTATCTCTAAAATCTCTGGACGAG 58.621 44.000 0.00 0.00 41.30 4.18
2723 2865 5.241949 GGCTATCTCTAAAATCTCTGGACGA 59.758 44.000 0.00 0.00 0.00 4.20
2725 2867 6.412362 TGGCTATCTCTAAAATCTCTGGAC 57.588 41.667 0.00 0.00 0.00 4.02
2726 2868 6.841229 TCTTGGCTATCTCTAAAATCTCTGGA 59.159 38.462 0.00 0.00 0.00 3.86
2727 2869 7.060383 TCTTGGCTATCTCTAAAATCTCTGG 57.940 40.000 0.00 0.00 0.00 3.86
2728 2870 7.440856 GGTTCTTGGCTATCTCTAAAATCTCTG 59.559 40.741 0.00 0.00 0.00 3.35
2730 2872 7.275920 TGGTTCTTGGCTATCTCTAAAATCTC 58.724 38.462 0.00 0.00 0.00 2.75
2731 2873 7.200434 TGGTTCTTGGCTATCTCTAAAATCT 57.800 36.000 0.00 0.00 0.00 2.40
2732 2874 7.865706 TTGGTTCTTGGCTATCTCTAAAATC 57.134 36.000 0.00 0.00 0.00 2.17
2733 2875 8.689972 CATTTGGTTCTTGGCTATCTCTAAAAT 58.310 33.333 0.00 0.00 0.00 1.82
2734 2876 7.888021 TCATTTGGTTCTTGGCTATCTCTAAAA 59.112 33.333 0.00 0.00 0.00 1.52
2735 2877 7.402054 TCATTTGGTTCTTGGCTATCTCTAAA 58.598 34.615 0.00 0.00 0.00 1.85
2736 2878 6.957631 TCATTTGGTTCTTGGCTATCTCTAA 58.042 36.000 0.00 0.00 0.00 2.10
2737 2879 6.560003 TCATTTGGTTCTTGGCTATCTCTA 57.440 37.500 0.00 0.00 0.00 2.43
2792 3473 7.455641 ACGGATAACACAAACCAAATAATCA 57.544 32.000 0.00 0.00 0.00 2.57
2842 3523 6.092955 ACAAATGCACAGATTGAACTTCAT 57.907 33.333 9.52 0.00 0.00 2.57
2874 3555 9.249457 TGATGATAAGAAAGCAGTAATTCTACG 57.751 33.333 0.00 0.00 34.90 3.51
2889 3570 8.896744 CATTCCTAAAAGCAGTGATGATAAGAA 58.103 33.333 0.00 0.00 0.00 2.52
2902 3583 3.221771 ACACACTGCATTCCTAAAAGCA 58.778 40.909 0.00 0.00 36.79 3.91
2904 3585 6.560253 AAGTACACACTGCATTCCTAAAAG 57.440 37.500 0.00 0.00 34.36 2.27
2930 3611 2.680312 TCCTTGTGAGCTGCTGATAC 57.320 50.000 7.01 4.05 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.