Multiple sequence alignment - TraesCS4D01G065500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G065500 chr4D 100.000 3248 0 0 1 3248 40650776 40654023 0.000000e+00 5999
1 TraesCS4D01G065500 chr4B 93.438 2484 115 21 792 3248 59589266 59591728 0.000000e+00 3640
2 TraesCS4D01G065500 chr4B 80.798 401 44 19 395 766 59588460 59588856 1.910000e-72 283
3 TraesCS4D01G065500 chr4A 94.604 2372 90 11 894 3248 559049927 559047577 0.000000e+00 3637


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G065500 chr4D 40650776 40654023 3247 False 5999.0 5999 100.000 1 3248 1 chr4D.!!$F1 3247
1 TraesCS4D01G065500 chr4B 59588460 59591728 3268 False 1961.5 3640 87.118 395 3248 2 chr4B.!!$F1 2853
2 TraesCS4D01G065500 chr4A 559047577 559049927 2350 True 3637.0 3637 94.604 894 3248 1 chr4A.!!$R1 2354

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.034337 ATTTGGCTGCTGCAACAAGG 59.966 50.0 17.89 1.26 41.91 3.61 F
91 92 0.318445 CTGCTGCAACAAGGTGCTTC 60.318 55.0 11.79 3.69 45.17 3.86 F
498 500 0.320771 ACTCGGCTTCGTGCAATTCT 60.321 50.0 0.00 0.00 45.15 2.40 F
707 740 0.538118 ACTTCTATTACCCGCGCCAA 59.462 50.0 0.00 0.00 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1899 2339 3.749088 CCGCACTGTAATACCTCACAAAA 59.251 43.478 0.00 0.0 0.00 2.44 R
2088 2528 0.400815 TGTAGGTGTGTTCCCTGGGT 60.401 55.000 13.56 0.0 33.35 4.51 R
2220 2660 0.463654 TCACTGGTCGCATTATGGGC 60.464 55.000 4.28 0.4 0.00 5.36 R
2466 2907 0.539051 TTGGTGGTGTTTTGGGCTTG 59.461 50.000 0.00 0.0 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.709992 CCTGGTTCCTACCCCATGT 58.290 57.895 0.00 0.00 44.35 3.21
19 20 0.255890 CCTGGTTCCTACCCCATGTG 59.744 60.000 0.00 0.00 44.35 3.21
20 21 1.285280 CTGGTTCCTACCCCATGTGA 58.715 55.000 0.00 0.00 44.35 3.58
21 22 0.988832 TGGTTCCTACCCCATGTGAC 59.011 55.000 0.00 0.00 44.35 3.67
22 23 1.286248 GGTTCCTACCCCATGTGACT 58.714 55.000 0.00 0.00 38.60 3.41
23 24 2.225675 TGGTTCCTACCCCATGTGACTA 60.226 50.000 0.00 0.00 44.35 2.59
24 25 2.169978 GGTTCCTACCCCATGTGACTAC 59.830 54.545 0.00 0.00 38.60 2.73
25 26 3.105283 GTTCCTACCCCATGTGACTACT 58.895 50.000 0.00 0.00 0.00 2.57
26 27 2.747177 TCCTACCCCATGTGACTACTG 58.253 52.381 0.00 0.00 0.00 2.74
27 28 2.043939 TCCTACCCCATGTGACTACTGT 59.956 50.000 0.00 0.00 0.00 3.55
28 29 2.168521 CCTACCCCATGTGACTACTGTG 59.831 54.545 0.00 0.00 0.00 3.66
29 30 0.984230 ACCCCATGTGACTACTGTGG 59.016 55.000 0.00 0.00 34.87 4.17
30 31 1.275666 CCCCATGTGACTACTGTGGA 58.724 55.000 0.00 0.00 36.20 4.02
31 32 1.839994 CCCCATGTGACTACTGTGGAT 59.160 52.381 0.00 0.00 36.20 3.41
32 33 2.420547 CCCCATGTGACTACTGTGGATG 60.421 54.545 0.00 0.00 36.20 3.51
33 34 2.283298 CCATGTGACTACTGTGGATGC 58.717 52.381 0.00 0.00 36.20 3.91
34 35 2.093288 CCATGTGACTACTGTGGATGCT 60.093 50.000 0.00 0.00 36.20 3.79
35 36 2.749280 TGTGACTACTGTGGATGCTG 57.251 50.000 0.00 0.00 0.00 4.41
36 37 1.970640 TGTGACTACTGTGGATGCTGT 59.029 47.619 0.00 0.00 0.00 4.40
37 38 2.368548 TGTGACTACTGTGGATGCTGTT 59.631 45.455 0.00 0.00 0.00 3.16
38 39 2.738846 GTGACTACTGTGGATGCTGTTG 59.261 50.000 0.00 0.00 0.00 3.33
39 40 2.632512 TGACTACTGTGGATGCTGTTGA 59.367 45.455 0.00 0.00 0.00 3.18
40 41 3.070878 TGACTACTGTGGATGCTGTTGAA 59.929 43.478 0.00 0.00 0.00 2.69
41 42 4.065088 GACTACTGTGGATGCTGTTGAAA 58.935 43.478 0.00 0.00 0.00 2.69
42 43 4.655963 ACTACTGTGGATGCTGTTGAAAT 58.344 39.130 0.00 0.00 0.00 2.17
43 44 5.804639 ACTACTGTGGATGCTGTTGAAATA 58.195 37.500 0.00 0.00 0.00 1.40
44 45 6.237901 ACTACTGTGGATGCTGTTGAAATAA 58.762 36.000 0.00 0.00 0.00 1.40
45 46 5.633830 ACTGTGGATGCTGTTGAAATAAG 57.366 39.130 0.00 0.00 0.00 1.73
46 47 5.072741 ACTGTGGATGCTGTTGAAATAAGT 58.927 37.500 0.00 0.00 0.00 2.24
47 48 6.237901 ACTGTGGATGCTGTTGAAATAAGTA 58.762 36.000 0.00 0.00 0.00 2.24
48 49 6.149474 ACTGTGGATGCTGTTGAAATAAGTAC 59.851 38.462 0.00 0.00 0.00 2.73
49 50 6.237901 TGTGGATGCTGTTGAAATAAGTACT 58.762 36.000 0.00 0.00 0.00 2.73
50 51 7.390823 TGTGGATGCTGTTGAAATAAGTACTA 58.609 34.615 0.00 0.00 0.00 1.82
51 52 7.880713 TGTGGATGCTGTTGAAATAAGTACTAA 59.119 33.333 0.00 0.00 0.00 2.24
52 53 8.893727 GTGGATGCTGTTGAAATAAGTACTAAT 58.106 33.333 0.00 0.00 0.00 1.73
72 73 8.863872 ACTAATAGGAATGGTATGTATTTGGC 57.136 34.615 0.00 0.00 0.00 4.52
73 74 8.669571 ACTAATAGGAATGGTATGTATTTGGCT 58.330 33.333 0.00 0.00 0.00 4.75
74 75 7.765695 AATAGGAATGGTATGTATTTGGCTG 57.234 36.000 0.00 0.00 0.00 4.85
75 76 3.891366 AGGAATGGTATGTATTTGGCTGC 59.109 43.478 0.00 0.00 0.00 5.25
76 77 3.891366 GGAATGGTATGTATTTGGCTGCT 59.109 43.478 0.00 0.00 0.00 4.24
77 78 4.261741 GGAATGGTATGTATTTGGCTGCTG 60.262 45.833 0.00 0.00 0.00 4.41
78 79 2.023673 TGGTATGTATTTGGCTGCTGC 58.976 47.619 7.10 7.10 38.76 5.25
79 80 2.023673 GGTATGTATTTGGCTGCTGCA 58.976 47.619 17.89 0.88 41.91 4.41
80 81 2.426738 GGTATGTATTTGGCTGCTGCAA 59.573 45.455 17.89 2.58 41.91 4.08
81 82 2.660189 ATGTATTTGGCTGCTGCAAC 57.340 45.000 17.89 0.00 41.91 4.17
82 83 1.326328 TGTATTTGGCTGCTGCAACA 58.674 45.000 17.89 9.75 41.91 3.33
83 84 1.685517 TGTATTTGGCTGCTGCAACAA 59.314 42.857 17.89 13.37 41.91 2.83
84 85 2.288334 TGTATTTGGCTGCTGCAACAAG 60.288 45.455 17.89 1.60 41.91 3.16
85 86 0.034337 ATTTGGCTGCTGCAACAAGG 59.966 50.000 17.89 1.26 41.91 3.61
86 87 1.329171 TTTGGCTGCTGCAACAAGGT 61.329 50.000 17.89 0.00 41.91 3.50
87 88 2.018727 TTGGCTGCTGCAACAAGGTG 62.019 55.000 17.89 0.00 41.91 4.00
88 89 2.355481 GCTGCTGCAACAAGGTGC 60.355 61.111 11.11 2.51 45.15 5.01
89 90 2.853290 GCTGCTGCAACAAGGTGCT 61.853 57.895 11.79 0.00 45.17 4.40
90 91 1.737816 CTGCTGCAACAAGGTGCTT 59.262 52.632 11.79 0.00 45.17 3.91
91 92 0.318445 CTGCTGCAACAAGGTGCTTC 60.318 55.000 11.79 3.69 45.17 3.86
92 93 0.752743 TGCTGCAACAAGGTGCTTCT 60.753 50.000 11.79 0.00 45.17 2.85
93 94 0.386838 GCTGCAACAAGGTGCTTCTT 59.613 50.000 11.79 0.00 45.17 2.52
94 95 1.866880 GCTGCAACAAGGTGCTTCTTG 60.867 52.381 11.79 14.88 46.86 3.02
95 96 1.677576 CTGCAACAAGGTGCTTCTTGA 59.322 47.619 20.71 3.68 44.98 3.02
96 97 1.677576 TGCAACAAGGTGCTTCTTGAG 59.322 47.619 20.71 14.79 44.98 3.02
97 98 1.678101 GCAACAAGGTGCTTCTTGAGT 59.322 47.619 20.71 9.39 44.98 3.41
98 99 2.287248 GCAACAAGGTGCTTCTTGAGTC 60.287 50.000 20.71 9.00 44.98 3.36
99 100 3.209410 CAACAAGGTGCTTCTTGAGTCT 58.791 45.455 20.71 2.07 44.98 3.24
100 101 3.567478 ACAAGGTGCTTCTTGAGTCTT 57.433 42.857 20.71 1.77 44.98 3.01
101 102 4.689612 ACAAGGTGCTTCTTGAGTCTTA 57.310 40.909 20.71 0.00 44.98 2.10
102 103 5.234466 ACAAGGTGCTTCTTGAGTCTTAT 57.766 39.130 20.71 0.65 44.98 1.73
103 104 5.625150 ACAAGGTGCTTCTTGAGTCTTATT 58.375 37.500 20.71 0.08 44.98 1.40
104 105 5.471456 ACAAGGTGCTTCTTGAGTCTTATTG 59.529 40.000 20.71 0.00 44.98 1.90
105 106 4.006319 AGGTGCTTCTTGAGTCTTATTGC 58.994 43.478 0.00 0.00 0.00 3.56
106 107 4.006319 GGTGCTTCTTGAGTCTTATTGCT 58.994 43.478 0.00 0.00 0.00 3.91
107 108 4.457257 GGTGCTTCTTGAGTCTTATTGCTT 59.543 41.667 0.00 0.00 0.00 3.91
108 109 5.388944 GTGCTTCTTGAGTCTTATTGCTTG 58.611 41.667 0.00 0.00 0.00 4.01
109 110 5.049129 GTGCTTCTTGAGTCTTATTGCTTGT 60.049 40.000 0.00 0.00 0.00 3.16
110 111 5.532406 TGCTTCTTGAGTCTTATTGCTTGTT 59.468 36.000 0.00 0.00 0.00 2.83
111 112 6.039717 TGCTTCTTGAGTCTTATTGCTTGTTT 59.960 34.615 0.00 0.00 0.00 2.83
112 113 6.361748 GCTTCTTGAGTCTTATTGCTTGTTTG 59.638 38.462 0.00 0.00 0.00 2.93
113 114 6.942532 TCTTGAGTCTTATTGCTTGTTTGT 57.057 33.333 0.00 0.00 0.00 2.83
114 115 6.959361 TCTTGAGTCTTATTGCTTGTTTGTC 58.041 36.000 0.00 0.00 0.00 3.18
115 116 5.342806 TGAGTCTTATTGCTTGTTTGTCG 57.657 39.130 0.00 0.00 0.00 4.35
116 117 4.814234 TGAGTCTTATTGCTTGTTTGTCGT 59.186 37.500 0.00 0.00 0.00 4.34
117 118 5.295787 TGAGTCTTATTGCTTGTTTGTCGTT 59.704 36.000 0.00 0.00 0.00 3.85
118 119 5.510671 AGTCTTATTGCTTGTTTGTCGTTG 58.489 37.500 0.00 0.00 0.00 4.10
119 120 5.295787 AGTCTTATTGCTTGTTTGTCGTTGA 59.704 36.000 0.00 0.00 0.00 3.18
120 121 5.968848 GTCTTATTGCTTGTTTGTCGTTGAA 59.031 36.000 0.00 0.00 0.00 2.69
121 122 6.470877 GTCTTATTGCTTGTTTGTCGTTGAAA 59.529 34.615 0.00 0.00 0.00 2.69
122 123 6.470877 TCTTATTGCTTGTTTGTCGTTGAAAC 59.529 34.615 0.00 0.00 34.48 2.78
123 124 3.560902 TGCTTGTTTGTCGTTGAAACA 57.439 38.095 0.00 0.00 40.65 2.83
124 125 4.103365 TGCTTGTTTGTCGTTGAAACAT 57.897 36.364 0.00 0.00 41.66 2.71
125 126 4.489810 TGCTTGTTTGTCGTTGAAACATT 58.510 34.783 0.00 0.00 41.66 2.71
126 127 4.325741 TGCTTGTTTGTCGTTGAAACATTG 59.674 37.500 0.00 0.00 41.66 2.82
127 128 4.778773 GCTTGTTTGTCGTTGAAACATTGC 60.779 41.667 0.00 0.00 41.66 3.56
128 129 2.848887 TGTTTGTCGTTGAAACATTGCG 59.151 40.909 0.00 0.00 38.17 4.85
129 130 3.102276 GTTTGTCGTTGAAACATTGCGA 58.898 40.909 0.00 0.00 34.13 5.10
130 131 3.406728 TTGTCGTTGAAACATTGCGAA 57.593 38.095 0.00 0.00 33.30 4.70
131 132 3.406728 TGTCGTTGAAACATTGCGAAA 57.593 38.095 0.00 0.00 33.30 3.46
132 133 3.759418 TGTCGTTGAAACATTGCGAAAA 58.241 36.364 0.00 0.00 33.30 2.29
133 134 3.788694 TGTCGTTGAAACATTGCGAAAAG 59.211 39.130 0.00 0.00 33.30 2.27
134 135 4.032355 GTCGTTGAAACATTGCGAAAAGA 58.968 39.130 0.00 0.00 33.30 2.52
135 136 4.144731 GTCGTTGAAACATTGCGAAAAGAG 59.855 41.667 0.00 0.00 33.30 2.85
136 137 3.421888 CGTTGAAACATTGCGAAAAGAGG 59.578 43.478 0.00 0.00 0.00 3.69
137 138 4.606961 GTTGAAACATTGCGAAAAGAGGA 58.393 39.130 0.00 0.00 0.00 3.71
138 139 4.909696 TGAAACATTGCGAAAAGAGGAA 57.090 36.364 0.00 0.00 0.00 3.36
139 140 4.606961 TGAAACATTGCGAAAAGAGGAAC 58.393 39.130 0.00 0.00 0.00 3.62
140 141 4.097135 TGAAACATTGCGAAAAGAGGAACA 59.903 37.500 0.00 0.00 0.00 3.18
141 142 4.853924 AACATTGCGAAAAGAGGAACAT 57.146 36.364 0.00 0.00 0.00 2.71
142 143 4.853924 ACATTGCGAAAAGAGGAACATT 57.146 36.364 0.00 0.00 0.00 2.71
143 144 5.957842 ACATTGCGAAAAGAGGAACATTA 57.042 34.783 0.00 0.00 0.00 1.90
144 145 5.699839 ACATTGCGAAAAGAGGAACATTAC 58.300 37.500 0.00 0.00 0.00 1.89
145 146 5.473504 ACATTGCGAAAAGAGGAACATTACT 59.526 36.000 0.00 0.00 0.00 2.24
146 147 6.016276 ACATTGCGAAAAGAGGAACATTACTT 60.016 34.615 0.00 0.00 0.00 2.24
147 148 5.607119 TGCGAAAAGAGGAACATTACTTC 57.393 39.130 0.00 0.00 0.00 3.01
148 149 5.060506 TGCGAAAAGAGGAACATTACTTCA 58.939 37.500 0.00 0.00 0.00 3.02
149 150 5.179368 TGCGAAAAGAGGAACATTACTTCAG 59.821 40.000 0.00 0.00 0.00 3.02
150 151 5.408604 GCGAAAAGAGGAACATTACTTCAGA 59.591 40.000 0.00 0.00 0.00 3.27
151 152 6.092807 GCGAAAAGAGGAACATTACTTCAGAT 59.907 38.462 0.00 0.00 0.00 2.90
152 153 7.675170 GCGAAAAGAGGAACATTACTTCAGATC 60.675 40.741 0.00 0.00 0.00 2.75
153 154 7.331934 CGAAAAGAGGAACATTACTTCAGATCA 59.668 37.037 0.00 0.00 0.00 2.92
154 155 7.913674 AAAGAGGAACATTACTTCAGATCAC 57.086 36.000 0.00 0.00 0.00 3.06
155 156 6.611613 AGAGGAACATTACTTCAGATCACA 57.388 37.500 0.00 0.00 0.00 3.58
156 157 6.638610 AGAGGAACATTACTTCAGATCACAG 58.361 40.000 0.00 0.00 0.00 3.66
157 158 6.438741 AGAGGAACATTACTTCAGATCACAGA 59.561 38.462 0.00 0.00 0.00 3.41
158 159 7.009179 AGGAACATTACTTCAGATCACAGAA 57.991 36.000 0.00 0.00 0.00 3.02
159 160 7.628234 AGGAACATTACTTCAGATCACAGAAT 58.372 34.615 0.00 0.00 0.00 2.40
160 161 7.768120 AGGAACATTACTTCAGATCACAGAATC 59.232 37.037 0.00 0.00 0.00 2.52
161 162 7.011857 GGAACATTACTTCAGATCACAGAATCC 59.988 40.741 0.00 0.00 0.00 3.01
162 163 6.950842 ACATTACTTCAGATCACAGAATCCA 58.049 36.000 0.00 0.00 0.00 3.41
163 164 7.397221 ACATTACTTCAGATCACAGAATCCAA 58.603 34.615 0.00 0.00 0.00 3.53
164 165 7.551974 ACATTACTTCAGATCACAGAATCCAAG 59.448 37.037 0.00 0.00 0.00 3.61
165 166 4.260170 ACTTCAGATCACAGAATCCAAGC 58.740 43.478 0.00 0.00 0.00 4.01
166 167 3.986996 TCAGATCACAGAATCCAAGCA 57.013 42.857 0.00 0.00 0.00 3.91
167 168 4.290711 TCAGATCACAGAATCCAAGCAA 57.709 40.909 0.00 0.00 0.00 3.91
168 169 4.005650 TCAGATCACAGAATCCAAGCAAC 58.994 43.478 0.00 0.00 0.00 4.17
169 170 4.008330 CAGATCACAGAATCCAAGCAACT 58.992 43.478 0.00 0.00 0.00 3.16
170 171 4.458295 CAGATCACAGAATCCAAGCAACTT 59.542 41.667 0.00 0.00 0.00 2.66
171 172 4.458295 AGATCACAGAATCCAAGCAACTTG 59.542 41.667 0.00 0.24 40.75 3.16
172 173 2.294233 TCACAGAATCCAAGCAACTTGC 59.706 45.455 5.55 5.55 45.46 4.01
182 183 3.256620 GCAACTTGCAAGCGAGTTT 57.743 47.368 26.27 9.84 45.49 2.66
183 184 0.848305 GCAACTTGCAAGCGAGTTTG 59.152 50.000 26.27 21.34 45.49 2.93
184 185 1.480205 CAACTTGCAAGCGAGTTTGG 58.520 50.000 26.27 10.57 45.49 3.28
185 186 1.102978 AACTTGCAAGCGAGTTTGGT 58.897 45.000 26.27 1.02 45.49 3.67
186 187 0.663153 ACTTGCAAGCGAGTTTGGTC 59.337 50.000 26.27 0.00 37.38 4.02
187 188 0.662619 CTTGCAAGCGAGTTTGGTCA 59.337 50.000 14.65 0.00 0.00 4.02
188 189 1.267806 CTTGCAAGCGAGTTTGGTCAT 59.732 47.619 14.65 0.00 0.00 3.06
189 190 0.592637 TGCAAGCGAGTTTGGTCATG 59.407 50.000 2.11 0.00 0.00 3.07
190 191 0.593128 GCAAGCGAGTTTGGTCATGT 59.407 50.000 2.11 0.00 0.00 3.21
191 192 1.001378 GCAAGCGAGTTTGGTCATGTT 60.001 47.619 2.11 0.00 0.00 2.71
192 193 2.653890 CAAGCGAGTTTGGTCATGTTG 58.346 47.619 0.00 0.00 0.00 3.33
193 194 2.254546 AGCGAGTTTGGTCATGTTGA 57.745 45.000 0.00 0.00 0.00 3.18
194 195 2.783135 AGCGAGTTTGGTCATGTTGAT 58.217 42.857 0.00 0.00 0.00 2.57
195 196 3.149196 AGCGAGTTTGGTCATGTTGATT 58.851 40.909 0.00 0.00 0.00 2.57
196 197 4.323417 AGCGAGTTTGGTCATGTTGATTA 58.677 39.130 0.00 0.00 0.00 1.75
197 198 4.943705 AGCGAGTTTGGTCATGTTGATTAT 59.056 37.500 0.00 0.00 0.00 1.28
198 199 5.065218 AGCGAGTTTGGTCATGTTGATTATC 59.935 40.000 0.00 0.00 0.00 1.75
199 200 5.163764 GCGAGTTTGGTCATGTTGATTATCA 60.164 40.000 0.00 0.00 0.00 2.15
200 201 6.481134 CGAGTTTGGTCATGTTGATTATCAG 58.519 40.000 0.00 0.00 0.00 2.90
201 202 6.199937 AGTTTGGTCATGTTGATTATCAGC 57.800 37.500 2.02 2.02 0.00 4.26
202 203 5.711506 AGTTTGGTCATGTTGATTATCAGCA 59.288 36.000 13.71 13.71 41.68 4.41
203 204 6.209192 AGTTTGGTCATGTTGATTATCAGCAA 59.791 34.615 15.16 2.64 40.85 3.91
204 205 6.778834 TTGGTCATGTTGATTATCAGCAAT 57.221 33.333 15.16 2.72 40.85 3.56
205 206 7.878547 TTGGTCATGTTGATTATCAGCAATA 57.121 32.000 15.16 4.54 40.85 1.90
206 207 8.467963 TTGGTCATGTTGATTATCAGCAATAT 57.532 30.769 15.16 0.00 40.85 1.28
207 208 9.571816 TTGGTCATGTTGATTATCAGCAATATA 57.428 29.630 15.16 0.01 40.85 0.86
208 209 9.571816 TGGTCATGTTGATTATCAGCAATATAA 57.428 29.630 15.16 0.46 40.85 0.98
226 227 9.883142 GCAATATAATAGAGAAGCTAATGAGGT 57.117 33.333 0.00 0.00 31.66 3.85
229 230 2.998316 AGAGAAGCTAATGAGGTGGC 57.002 50.000 0.00 0.00 32.39 5.01
230 231 2.191400 AGAGAAGCTAATGAGGTGGCA 58.809 47.619 0.00 0.00 32.39 4.92
231 232 2.573462 AGAGAAGCTAATGAGGTGGCAA 59.427 45.455 0.00 0.00 32.39 4.52
232 233 3.009473 AGAGAAGCTAATGAGGTGGCAAA 59.991 43.478 0.00 0.00 32.39 3.68
233 234 3.950395 GAGAAGCTAATGAGGTGGCAAAT 59.050 43.478 0.00 0.00 32.39 2.32
234 235 4.347607 AGAAGCTAATGAGGTGGCAAATT 58.652 39.130 0.00 0.00 32.39 1.82
235 236 4.159135 AGAAGCTAATGAGGTGGCAAATTG 59.841 41.667 0.00 0.00 32.39 2.32
236 237 3.434309 AGCTAATGAGGTGGCAAATTGT 58.566 40.909 0.00 0.00 30.28 2.71
237 238 3.445096 AGCTAATGAGGTGGCAAATTGTC 59.555 43.478 0.00 0.00 30.28 3.18
238 239 3.445096 GCTAATGAGGTGGCAAATTGTCT 59.555 43.478 0.00 0.00 0.00 3.41
239 240 4.640201 GCTAATGAGGTGGCAAATTGTCTA 59.360 41.667 0.00 0.00 0.00 2.59
240 241 5.220931 GCTAATGAGGTGGCAAATTGTCTAG 60.221 44.000 0.00 0.00 0.00 2.43
241 242 2.436417 TGAGGTGGCAAATTGTCTAGC 58.564 47.619 0.00 0.00 0.00 3.42
242 243 2.040278 TGAGGTGGCAAATTGTCTAGCT 59.960 45.455 0.00 2.47 0.00 3.32
243 244 3.263170 TGAGGTGGCAAATTGTCTAGCTA 59.737 43.478 0.00 0.00 0.00 3.32
244 245 4.261801 GAGGTGGCAAATTGTCTAGCTAA 58.738 43.478 0.00 0.00 0.00 3.09
245 246 4.265073 AGGTGGCAAATTGTCTAGCTAAG 58.735 43.478 0.00 0.00 0.00 2.18
246 247 4.010349 GGTGGCAAATTGTCTAGCTAAGT 58.990 43.478 0.00 0.00 0.00 2.24
247 248 4.095036 GGTGGCAAATTGTCTAGCTAAGTC 59.905 45.833 0.00 0.00 0.00 3.01
248 249 4.938226 GTGGCAAATTGTCTAGCTAAGTCT 59.062 41.667 0.00 0.00 0.00 3.24
249 250 5.064071 GTGGCAAATTGTCTAGCTAAGTCTC 59.936 44.000 0.00 0.00 0.00 3.36
250 251 5.178797 GGCAAATTGTCTAGCTAAGTCTCA 58.821 41.667 0.00 0.00 0.00 3.27
251 252 5.819901 GGCAAATTGTCTAGCTAAGTCTCAT 59.180 40.000 0.00 0.00 0.00 2.90
252 253 6.317391 GGCAAATTGTCTAGCTAAGTCTCATT 59.683 38.462 0.00 0.00 0.00 2.57
253 254 7.148171 GGCAAATTGTCTAGCTAAGTCTCATTT 60.148 37.037 0.00 0.00 0.00 2.32
254 255 8.883731 GCAAATTGTCTAGCTAAGTCTCATTTA 58.116 33.333 0.00 0.00 0.00 1.40
265 266 8.110860 GCTAAGTCTCATTTAGCTCTAGATCT 57.889 38.462 0.00 0.00 45.94 2.75
266 267 8.576442 GCTAAGTCTCATTTAGCTCTAGATCTT 58.424 37.037 0.00 0.00 45.94 2.40
269 270 8.766994 AGTCTCATTTAGCTCTAGATCTTTCT 57.233 34.615 0.00 0.00 35.90 2.52
270 271 8.850156 AGTCTCATTTAGCTCTAGATCTTTCTC 58.150 37.037 0.00 0.00 33.17 2.87
271 272 8.082242 GTCTCATTTAGCTCTAGATCTTTCTCC 58.918 40.741 0.00 0.00 33.17 3.71
272 273 8.004215 TCTCATTTAGCTCTAGATCTTTCTCCT 58.996 37.037 0.00 0.00 33.17 3.69
273 274 8.546083 TCATTTAGCTCTAGATCTTTCTCCTT 57.454 34.615 0.00 0.00 33.17 3.36
274 275 8.986991 TCATTTAGCTCTAGATCTTTCTCCTTT 58.013 33.333 0.00 0.00 33.17 3.11
275 276 9.612066 CATTTAGCTCTAGATCTTTCTCCTTTT 57.388 33.333 0.00 0.00 33.17 2.27
276 277 9.612066 ATTTAGCTCTAGATCTTTCTCCTTTTG 57.388 33.333 0.00 0.00 33.17 2.44
277 278 5.988287 AGCTCTAGATCTTTCTCCTTTTGG 58.012 41.667 0.00 0.00 42.21 3.28
278 279 5.104569 AGCTCTAGATCTTTCTCCTTTTGGG 60.105 44.000 0.00 0.00 40.87 4.12
279 280 5.104735 GCTCTAGATCTTTCTCCTTTTGGGA 60.105 44.000 0.00 0.00 42.77 4.37
280 281 6.301169 TCTAGATCTTTCTCCTTTTGGGAC 57.699 41.667 0.00 0.00 39.58 4.46
281 282 5.785423 TCTAGATCTTTCTCCTTTTGGGACA 59.215 40.000 0.00 0.00 39.58 4.02
282 283 4.657013 AGATCTTTCTCCTTTTGGGACAC 58.343 43.478 0.00 0.00 39.29 3.67
283 284 4.352298 AGATCTTTCTCCTTTTGGGACACT 59.648 41.667 0.00 0.00 39.29 3.55
284 285 5.548056 AGATCTTTCTCCTTTTGGGACACTA 59.452 40.000 0.00 0.00 39.29 2.74
285 286 4.969484 TCTTTCTCCTTTTGGGACACTAC 58.031 43.478 0.00 0.00 39.29 2.73
286 287 3.782656 TTCTCCTTTTGGGACACTACC 57.217 47.619 0.00 0.00 39.29 3.18
287 288 2.696775 TCTCCTTTTGGGACACTACCA 58.303 47.619 0.00 0.00 39.29 3.25
288 289 3.256704 TCTCCTTTTGGGACACTACCAT 58.743 45.455 0.00 0.00 39.29 3.55
289 290 3.263425 TCTCCTTTTGGGACACTACCATC 59.737 47.826 0.00 0.00 39.29 3.51
290 291 2.307686 TCCTTTTGGGACACTACCATCC 59.692 50.000 0.00 0.00 39.29 3.51
291 292 2.356135 CTTTTGGGACACTACCATCCG 58.644 52.381 0.00 0.00 39.29 4.18
292 293 1.646912 TTTGGGACACTACCATCCGA 58.353 50.000 0.00 0.00 39.29 4.55
293 294 1.191535 TTGGGACACTACCATCCGAG 58.808 55.000 0.00 0.00 39.29 4.63
294 295 0.333652 TGGGACACTACCATCCGAGA 59.666 55.000 0.00 0.00 35.67 4.04
295 296 0.745468 GGGACACTACCATCCGAGAC 59.255 60.000 0.00 0.00 35.67 3.36
296 297 1.685491 GGGACACTACCATCCGAGACT 60.685 57.143 0.00 0.00 35.67 3.24
297 298 2.100989 GGACACTACCATCCGAGACTT 58.899 52.381 0.00 0.00 0.00 3.01
298 299 2.496470 GGACACTACCATCCGAGACTTT 59.504 50.000 0.00 0.00 0.00 2.66
299 300 3.698040 GGACACTACCATCCGAGACTTTA 59.302 47.826 0.00 0.00 0.00 1.85
300 301 4.341520 GGACACTACCATCCGAGACTTTAT 59.658 45.833 0.00 0.00 0.00 1.40
301 302 5.163437 GGACACTACCATCCGAGACTTTATT 60.163 44.000 0.00 0.00 0.00 1.40
302 303 6.295719 ACACTACCATCCGAGACTTTATTT 57.704 37.500 0.00 0.00 0.00 1.40
303 304 6.338937 ACACTACCATCCGAGACTTTATTTC 58.661 40.000 0.00 0.00 0.00 2.17
304 305 6.070995 ACACTACCATCCGAGACTTTATTTCA 60.071 38.462 0.00 0.00 0.00 2.69
305 306 6.986817 CACTACCATCCGAGACTTTATTTCAT 59.013 38.462 0.00 0.00 0.00 2.57
306 307 8.141909 CACTACCATCCGAGACTTTATTTCATA 58.858 37.037 0.00 0.00 0.00 2.15
307 308 8.871125 ACTACCATCCGAGACTTTATTTCATAT 58.129 33.333 0.00 0.00 0.00 1.78
308 309 9.712305 CTACCATCCGAGACTTTATTTCATATT 57.288 33.333 0.00 0.00 0.00 1.28
309 310 8.980481 ACCATCCGAGACTTTATTTCATATTT 57.020 30.769 0.00 0.00 0.00 1.40
310 311 8.840321 ACCATCCGAGACTTTATTTCATATTTG 58.160 33.333 0.00 0.00 0.00 2.32
311 312 7.805071 CCATCCGAGACTTTATTTCATATTTGC 59.195 37.037 0.00 0.00 0.00 3.68
312 313 8.562892 CATCCGAGACTTTATTTCATATTTGCT 58.437 33.333 0.00 0.00 0.00 3.91
313 314 8.506168 TCCGAGACTTTATTTCATATTTGCTT 57.494 30.769 0.00 0.00 0.00 3.91
314 315 8.397906 TCCGAGACTTTATTTCATATTTGCTTG 58.602 33.333 0.00 0.00 0.00 4.01
315 316 8.184192 CCGAGACTTTATTTCATATTTGCTTGT 58.816 33.333 0.00 0.00 0.00 3.16
332 333 8.437360 TTTGCTTGTAAATGATATCTCGATGT 57.563 30.769 3.98 0.00 0.00 3.06
333 334 8.437360 TTGCTTGTAAATGATATCTCGATGTT 57.563 30.769 3.98 0.00 0.00 2.71
334 335 7.854534 TGCTTGTAAATGATATCTCGATGTTG 58.145 34.615 3.98 0.00 0.00 3.33
335 336 7.495606 TGCTTGTAAATGATATCTCGATGTTGT 59.504 33.333 3.98 0.00 0.00 3.32
336 337 7.795734 GCTTGTAAATGATATCTCGATGTTGTG 59.204 37.037 3.98 0.00 0.00 3.33
337 338 8.940768 TTGTAAATGATATCTCGATGTTGTGA 57.059 30.769 3.98 0.00 0.00 3.58
338 339 9.546428 TTGTAAATGATATCTCGATGTTGTGAT 57.454 29.630 3.98 0.00 0.00 3.06
339 340 8.981647 TGTAAATGATATCTCGATGTTGTGATG 58.018 33.333 3.98 0.00 0.00 3.07
340 341 9.196552 GTAAATGATATCTCGATGTTGTGATGA 57.803 33.333 3.98 0.00 0.00 2.92
341 342 8.667076 AAATGATATCTCGATGTTGTGATGAA 57.333 30.769 3.98 0.00 0.00 2.57
342 343 8.843885 AATGATATCTCGATGTTGTGATGAAT 57.156 30.769 3.98 0.00 0.00 2.57
343 344 9.933723 AATGATATCTCGATGTTGTGATGAATA 57.066 29.630 3.98 0.00 0.00 1.75
344 345 9.933723 ATGATATCTCGATGTTGTGATGAATAA 57.066 29.630 3.98 0.00 0.00 1.40
345 346 9.415544 TGATATCTCGATGTTGTGATGAATAAG 57.584 33.333 3.98 0.00 0.00 1.73
346 347 8.768957 ATATCTCGATGTTGTGATGAATAAGG 57.231 34.615 0.00 0.00 0.00 2.69
347 348 5.977635 TCTCGATGTTGTGATGAATAAGGT 58.022 37.500 0.00 0.00 0.00 3.50
348 349 6.406370 TCTCGATGTTGTGATGAATAAGGTT 58.594 36.000 0.00 0.00 0.00 3.50
349 350 6.535150 TCTCGATGTTGTGATGAATAAGGTTC 59.465 38.462 0.00 0.00 0.00 3.62
350 351 6.406370 TCGATGTTGTGATGAATAAGGTTCT 58.594 36.000 0.00 0.00 0.00 3.01
351 352 7.552459 TCGATGTTGTGATGAATAAGGTTCTA 58.448 34.615 0.00 0.00 0.00 2.10
352 353 8.204160 TCGATGTTGTGATGAATAAGGTTCTAT 58.796 33.333 0.00 0.00 0.00 1.98
353 354 9.476202 CGATGTTGTGATGAATAAGGTTCTATA 57.524 33.333 0.00 0.00 0.00 1.31
485 487 6.204688 TGATGGATTTATGTCAAATACTCGGC 59.795 38.462 0.00 0.00 0.00 5.54
486 488 5.680619 TGGATTTATGTCAAATACTCGGCT 58.319 37.500 0.00 0.00 0.00 5.52
488 490 6.260050 TGGATTTATGTCAAATACTCGGCTTC 59.740 38.462 0.00 0.00 0.00 3.86
497 499 1.355971 TACTCGGCTTCGTGCAATTC 58.644 50.000 0.00 0.00 45.15 2.17
498 500 0.320771 ACTCGGCTTCGTGCAATTCT 60.321 50.000 0.00 0.00 45.15 2.40
501 503 1.067142 TCGGCTTCGTGCAATTCTAGT 60.067 47.619 0.00 0.00 45.15 2.57
504 506 2.094417 GGCTTCGTGCAATTCTAGTCAC 59.906 50.000 0.00 0.00 45.15 3.67
525 527 5.355071 TCACTGGTTATGAATGCTCATGAAC 59.645 40.000 0.00 0.00 42.48 3.18
545 547 7.624360 TGAACGTGCCTCAATTTTCTAATAT 57.376 32.000 0.00 0.00 0.00 1.28
550 552 8.952278 ACGTGCCTCAATTTTCTAATATACAAA 58.048 29.630 0.00 0.00 0.00 2.83
639 672 4.171878 AGTCTAGTATGCAGGCTAGTCA 57.828 45.455 20.10 6.13 36.84 3.41
646 679 1.055849 TGCAGGCTAGTCACTCCAAA 58.944 50.000 0.00 0.00 0.00 3.28
657 690 6.371548 GCTAGTCACTCCAAAATACATCAACA 59.628 38.462 0.00 0.00 0.00 3.33
659 692 7.206981 AGTCACTCCAAAATACATCAACAAG 57.793 36.000 0.00 0.00 0.00 3.16
667 700 6.311200 CCAAAATACATCAACAAGCCTTTAGC 59.689 38.462 0.00 0.00 44.25 3.09
690 723 7.547227 AGCTACACAAAATCAAAACTTCAACT 58.453 30.769 0.00 0.00 0.00 3.16
707 740 0.538118 ACTTCTATTACCCGCGCCAA 59.462 50.000 0.00 0.00 0.00 4.52
714 747 1.302383 TTACCCGCGCCAACATTCAG 61.302 55.000 0.00 0.00 0.00 3.02
725 758 3.858503 GCCAACATTCAGCTTCCAAGTTC 60.859 47.826 0.00 0.00 0.00 3.01
728 761 3.565307 ACATTCAGCTTCCAAGTTCCAA 58.435 40.909 0.00 0.00 0.00 3.53
729 762 3.319122 ACATTCAGCTTCCAAGTTCCAAC 59.681 43.478 0.00 0.00 0.00 3.77
732 765 2.687935 TCAGCTTCCAAGTTCCAACAAC 59.312 45.455 0.00 0.00 0.00 3.32
735 768 3.706086 AGCTTCCAAGTTCCAACAACAAT 59.294 39.130 0.00 0.00 0.00 2.71
742 775 5.578727 CCAAGTTCCAACAACAATTTTTCGA 59.421 36.000 0.00 0.00 0.00 3.71
745 778 4.314740 TCCAACAACAATTTTTCGAGGG 57.685 40.909 0.00 0.00 0.00 4.30
748 782 3.619233 ACAACAATTTTTCGAGGGTCG 57.381 42.857 0.00 0.00 42.10 4.79
761 795 2.670509 CGAGGGTCGACTTTCAACTACC 60.671 54.545 16.46 4.52 43.74 3.18
766 800 5.012354 AGGGTCGACTTTCAACTACCAATAA 59.988 40.000 16.46 0.00 0.00 1.40
767 801 5.702209 GGGTCGACTTTCAACTACCAATAAA 59.298 40.000 16.46 0.00 0.00 1.40
768 802 6.373495 GGGTCGACTTTCAACTACCAATAAAT 59.627 38.462 16.46 0.00 0.00 1.40
769 803 7.550196 GGGTCGACTTTCAACTACCAATAAATA 59.450 37.037 16.46 0.00 0.00 1.40
770 804 8.601476 GGTCGACTTTCAACTACCAATAAATAG 58.399 37.037 16.46 0.00 0.00 1.73
771 805 9.362539 GTCGACTTTCAACTACCAATAAATAGA 57.637 33.333 8.70 0.00 0.00 1.98
772 806 9.362539 TCGACTTTCAACTACCAATAAATAGAC 57.637 33.333 0.00 0.00 0.00 2.59
773 807 9.146984 CGACTTTCAACTACCAATAAATAGACA 57.853 33.333 0.00 0.00 0.00 3.41
778 812 9.967451 TTCAACTACCAATAAATAGACATTCCA 57.033 29.630 0.00 0.00 0.00 3.53
779 813 9.967451 TCAACTACCAATAAATAGACATTCCAA 57.033 29.630 0.00 0.00 0.00 3.53
781 815 9.747898 AACTACCAATAAATAGACATTCCAACA 57.252 29.630 0.00 0.00 0.00 3.33
782 816 9.174166 ACTACCAATAAATAGACATTCCAACAC 57.826 33.333 0.00 0.00 0.00 3.32
783 817 9.396022 CTACCAATAAATAGACATTCCAACACT 57.604 33.333 0.00 0.00 0.00 3.55
786 820 8.739039 CCAATAAATAGACATTCCAACACTGAA 58.261 33.333 0.00 0.00 0.00 3.02
795 1214 9.883142 AGACATTCCAACACTGAAAAATAAAAA 57.117 25.926 0.00 0.00 0.00 1.94
862 1285 0.829602 TGCCAAAAGCCCATTTCCGA 60.830 50.000 0.00 0.00 42.71 4.55
904 1336 7.253422 CAGAGCCCAAACATAACTATTTTCTG 58.747 38.462 0.00 0.00 0.00 3.02
916 1348 1.535204 ATTTTCTGGGCCCAGTTGCG 61.535 55.000 43.64 25.03 43.96 4.85
918 1350 3.842925 TTCTGGGCCCAGTTGCGAC 62.843 63.158 43.64 7.33 43.96 5.19
1011 1445 0.804989 GCAACCAAATGTCCTCCTCG 59.195 55.000 0.00 0.00 0.00 4.63
1017 1454 1.272554 AAATGTCCTCCTCGTCCCCC 61.273 60.000 0.00 0.00 0.00 5.40
1021 1458 4.862823 CCTCCTCGTCCCCCTCCC 62.863 77.778 0.00 0.00 0.00 4.30
1022 1459 4.862823 CTCCTCGTCCCCCTCCCC 62.863 77.778 0.00 0.00 0.00 4.81
1024 1461 3.436028 CCTCGTCCCCCTCCCCTA 61.436 72.222 0.00 0.00 0.00 3.53
1025 1462 2.123382 CTCGTCCCCCTCCCCTAC 60.123 72.222 0.00 0.00 0.00 3.18
1026 1463 3.752816 CTCGTCCCCCTCCCCTACC 62.753 73.684 0.00 0.00 0.00 3.18
1027 1464 4.874533 CGTCCCCCTCCCCTACCC 62.875 77.778 0.00 0.00 0.00 3.69
1028 1465 4.511137 GTCCCCCTCCCCTACCCC 62.511 77.778 0.00 0.00 0.00 4.95
1031 1468 4.874533 CCCCTCCCCTACCCCGTC 62.875 77.778 0.00 0.00 0.00 4.79
1134 1571 3.391382 ACCTTCCGGGGCTTCTCG 61.391 66.667 0.00 0.00 40.03 4.04
1154 1591 4.162690 GTCCTCCATCGCCGCCTT 62.163 66.667 0.00 0.00 0.00 4.35
1725 2165 1.638529 CCGCCAGGAGAAGGATCTAT 58.361 55.000 0.00 0.00 41.02 1.98
1878 2318 2.361610 AAGAAGGGGTGCATGCCG 60.362 61.111 16.68 0.00 0.00 5.69
1899 2339 3.067742 CGAACCGGGTGACATATAACTCT 59.932 47.826 6.32 0.00 0.00 3.24
1959 2399 2.038295 GGCTATTGAGTGGATGAGGGAG 59.962 54.545 0.00 0.00 0.00 4.30
1998 2438 1.965930 GGTGGCGACATCAAGCACA 60.966 57.895 0.00 0.00 46.14 4.57
2127 2567 1.251251 AGCTTGTGAAGGATGCAACC 58.749 50.000 4.51 4.51 0.00 3.77
2367 2807 4.377841 GCATGTGTAAGCTGTTGAAGACTC 60.378 45.833 0.00 0.00 0.00 3.36
2382 2822 1.000993 ACTCTGATCGGGAGTGCCT 59.999 57.895 16.86 0.00 41.76 4.75
2452 2892 1.451449 TCCCAGGGGAAAAGCACTTA 58.549 50.000 5.33 0.00 42.05 2.24
2466 2907 9.080915 GGAAAAGCACTTAATGAAATGAGATTC 57.919 33.333 0.00 0.00 0.00 2.52
2503 2944 4.763793 CACCAATCAGAACTCACAGGATTT 59.236 41.667 0.00 0.00 0.00 2.17
2508 2949 4.389374 TCAGAACTCACAGGATTTGTTCC 58.611 43.478 0.00 0.00 45.85 3.62
2605 3057 1.737355 GCAACAGCCAACAAGCCTGA 61.737 55.000 0.00 0.00 0.00 3.86
2659 3111 5.416083 TGTTACTGTACATTTCTGGGATCG 58.584 41.667 0.00 0.00 0.00 3.69
2741 3193 6.819284 TCATCACAAGGAATTTGCTTTTCTT 58.181 32.000 0.00 0.00 40.59 2.52
2749 3201 4.283467 GGAATTTGCTTTTCTTACCCAGGT 59.717 41.667 0.00 0.00 0.00 4.00
2790 3242 5.540911 ACCAGAATTGCCAGTAAATTGTTG 58.459 37.500 0.00 0.00 0.00 3.33
2892 3344 8.001875 TCTATATTAGAAGTCACTGCCTTCTCT 58.998 37.037 5.61 0.00 44.00 3.10
2911 3363 8.562892 CCTTCTCTGTTGCTATATAATGTTTGG 58.437 37.037 0.00 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.105283 AGTAGTCACATGGGGTAGGAAC 58.895 50.000 0.00 0.00 0.00 3.62
5 6 3.104512 CAGTAGTCACATGGGGTAGGAA 58.895 50.000 0.00 0.00 0.00 3.36
6 7 2.043939 ACAGTAGTCACATGGGGTAGGA 59.956 50.000 0.00 0.00 0.00 2.94
7 8 2.168521 CACAGTAGTCACATGGGGTAGG 59.831 54.545 0.00 0.00 0.00 3.18
8 9 2.168521 CCACAGTAGTCACATGGGGTAG 59.831 54.545 0.00 0.00 32.56 3.18
9 10 2.184533 CCACAGTAGTCACATGGGGTA 58.815 52.381 0.00 0.00 32.56 3.69
10 11 0.984230 CCACAGTAGTCACATGGGGT 59.016 55.000 0.00 0.00 32.56 4.95
11 12 1.275666 TCCACAGTAGTCACATGGGG 58.724 55.000 0.00 0.00 38.97 4.96
12 13 2.910199 CATCCACAGTAGTCACATGGG 58.090 52.381 0.00 0.00 35.10 4.00
13 14 2.093288 AGCATCCACAGTAGTCACATGG 60.093 50.000 0.00 0.00 35.49 3.66
14 15 2.934553 CAGCATCCACAGTAGTCACATG 59.065 50.000 0.00 0.00 0.00 3.21
15 16 2.568956 ACAGCATCCACAGTAGTCACAT 59.431 45.455 0.00 0.00 0.00 3.21
16 17 1.970640 ACAGCATCCACAGTAGTCACA 59.029 47.619 0.00 0.00 0.00 3.58
17 18 2.738846 CAACAGCATCCACAGTAGTCAC 59.261 50.000 0.00 0.00 0.00 3.67
18 19 2.632512 TCAACAGCATCCACAGTAGTCA 59.367 45.455 0.00 0.00 0.00 3.41
19 20 3.319137 TCAACAGCATCCACAGTAGTC 57.681 47.619 0.00 0.00 0.00 2.59
20 21 3.769739 TTCAACAGCATCCACAGTAGT 57.230 42.857 0.00 0.00 0.00 2.73
21 22 6.372659 ACTTATTTCAACAGCATCCACAGTAG 59.627 38.462 0.00 0.00 0.00 2.57
22 23 6.237901 ACTTATTTCAACAGCATCCACAGTA 58.762 36.000 0.00 0.00 0.00 2.74
23 24 5.072741 ACTTATTTCAACAGCATCCACAGT 58.927 37.500 0.00 0.00 0.00 3.55
24 25 5.633830 ACTTATTTCAACAGCATCCACAG 57.366 39.130 0.00 0.00 0.00 3.66
25 26 6.237901 AGTACTTATTTCAACAGCATCCACA 58.762 36.000 0.00 0.00 0.00 4.17
26 27 6.743575 AGTACTTATTTCAACAGCATCCAC 57.256 37.500 0.00 0.00 0.00 4.02
46 47 9.953565 GCCAAATACATACCATTCCTATTAGTA 57.046 33.333 0.00 0.00 0.00 1.82
47 48 8.669571 AGCCAAATACATACCATTCCTATTAGT 58.330 33.333 0.00 0.00 0.00 2.24
48 49 8.950210 CAGCCAAATACATACCATTCCTATTAG 58.050 37.037 0.00 0.00 0.00 1.73
49 50 7.393234 GCAGCCAAATACATACCATTCCTATTA 59.607 37.037 0.00 0.00 0.00 0.98
50 51 6.209391 GCAGCCAAATACATACCATTCCTATT 59.791 38.462 0.00 0.00 0.00 1.73
51 52 5.711976 GCAGCCAAATACATACCATTCCTAT 59.288 40.000 0.00 0.00 0.00 2.57
52 53 5.070001 GCAGCCAAATACATACCATTCCTA 58.930 41.667 0.00 0.00 0.00 2.94
53 54 3.891366 GCAGCCAAATACATACCATTCCT 59.109 43.478 0.00 0.00 0.00 3.36
54 55 3.891366 AGCAGCCAAATACATACCATTCC 59.109 43.478 0.00 0.00 0.00 3.01
55 56 4.794003 GCAGCAGCCAAATACATACCATTC 60.794 45.833 0.00 0.00 33.58 2.67
56 57 3.068590 GCAGCAGCCAAATACATACCATT 59.931 43.478 0.00 0.00 33.58 3.16
57 58 2.624838 GCAGCAGCCAAATACATACCAT 59.375 45.455 0.00 0.00 33.58 3.55
58 59 2.023673 GCAGCAGCCAAATACATACCA 58.976 47.619 0.00 0.00 33.58 3.25
59 60 2.023673 TGCAGCAGCCAAATACATACC 58.976 47.619 0.00 0.00 41.13 2.73
60 61 3.119531 TGTTGCAGCAGCCAAATACATAC 60.120 43.478 6.80 0.00 41.13 2.39
61 62 3.087781 TGTTGCAGCAGCCAAATACATA 58.912 40.909 6.80 0.00 41.13 2.29
62 63 1.894466 TGTTGCAGCAGCCAAATACAT 59.106 42.857 6.80 0.00 41.13 2.29
63 64 1.326328 TGTTGCAGCAGCCAAATACA 58.674 45.000 6.80 0.00 41.13 2.29
64 65 2.331194 CTTGTTGCAGCAGCCAAATAC 58.669 47.619 6.80 0.00 41.13 1.89
65 66 1.273048 CCTTGTTGCAGCAGCCAAATA 59.727 47.619 6.80 0.00 41.13 1.40
66 67 0.034337 CCTTGTTGCAGCAGCCAAAT 59.966 50.000 6.80 0.00 41.13 2.32
67 68 1.329171 ACCTTGTTGCAGCAGCCAAA 61.329 50.000 6.80 0.00 41.13 3.28
68 69 1.757731 ACCTTGTTGCAGCAGCCAA 60.758 52.632 6.80 7.95 41.13 4.52
69 70 2.123769 ACCTTGTTGCAGCAGCCA 60.124 55.556 6.80 0.00 41.13 4.75
70 71 2.337532 CACCTTGTTGCAGCAGCC 59.662 61.111 6.80 0.00 41.13 4.85
71 72 2.355481 GCACCTTGTTGCAGCAGC 60.355 61.111 2.72 1.51 42.49 5.25
72 73 0.318445 GAAGCACCTTGTTGCAGCAG 60.318 55.000 2.72 0.00 45.62 4.24
73 74 0.752743 AGAAGCACCTTGTTGCAGCA 60.753 50.000 0.00 0.00 45.62 4.41
74 75 0.386838 AAGAAGCACCTTGTTGCAGC 59.613 50.000 0.00 0.00 45.62 5.25
75 76 1.677576 TCAAGAAGCACCTTGTTGCAG 59.322 47.619 14.90 0.00 45.62 4.41
76 77 1.677576 CTCAAGAAGCACCTTGTTGCA 59.322 47.619 14.90 0.00 45.62 4.08
77 78 1.678101 ACTCAAGAAGCACCTTGTTGC 59.322 47.619 14.90 0.00 42.14 4.17
78 79 3.209410 AGACTCAAGAAGCACCTTGTTG 58.791 45.455 14.90 8.13 43.23 3.33
79 80 3.567478 AGACTCAAGAAGCACCTTGTT 57.433 42.857 14.90 6.42 42.95 2.83
80 81 3.567478 AAGACTCAAGAAGCACCTTGT 57.433 42.857 14.90 0.95 42.95 3.16
81 82 5.618640 GCAATAAGACTCAAGAAGCACCTTG 60.619 44.000 10.69 10.69 43.58 3.61
82 83 4.457257 GCAATAAGACTCAAGAAGCACCTT 59.543 41.667 0.00 0.00 0.00 3.50
83 84 4.006319 GCAATAAGACTCAAGAAGCACCT 58.994 43.478 0.00 0.00 0.00 4.00
84 85 4.006319 AGCAATAAGACTCAAGAAGCACC 58.994 43.478 0.00 0.00 0.00 5.01
85 86 5.049129 ACAAGCAATAAGACTCAAGAAGCAC 60.049 40.000 0.00 0.00 0.00 4.40
86 87 5.065914 ACAAGCAATAAGACTCAAGAAGCA 58.934 37.500 0.00 0.00 0.00 3.91
87 88 5.619625 ACAAGCAATAAGACTCAAGAAGC 57.380 39.130 0.00 0.00 0.00 3.86
88 89 7.420800 ACAAACAAGCAATAAGACTCAAGAAG 58.579 34.615 0.00 0.00 0.00 2.85
89 90 7.333528 ACAAACAAGCAATAAGACTCAAGAA 57.666 32.000 0.00 0.00 0.00 2.52
90 91 6.292865 CGACAAACAAGCAATAAGACTCAAGA 60.293 38.462 0.00 0.00 0.00 3.02
91 92 5.848036 CGACAAACAAGCAATAAGACTCAAG 59.152 40.000 0.00 0.00 0.00 3.02
92 93 5.295787 ACGACAAACAAGCAATAAGACTCAA 59.704 36.000 0.00 0.00 0.00 3.02
93 94 4.814234 ACGACAAACAAGCAATAAGACTCA 59.186 37.500 0.00 0.00 0.00 3.41
94 95 5.344207 ACGACAAACAAGCAATAAGACTC 57.656 39.130 0.00 0.00 0.00 3.36
95 96 5.295787 TCAACGACAAACAAGCAATAAGACT 59.704 36.000 0.00 0.00 0.00 3.24
96 97 5.507077 TCAACGACAAACAAGCAATAAGAC 58.493 37.500 0.00 0.00 0.00 3.01
97 98 5.743026 TCAACGACAAACAAGCAATAAGA 57.257 34.783 0.00 0.00 0.00 2.10
98 99 6.252441 TGTTTCAACGACAAACAAGCAATAAG 59.748 34.615 8.27 0.00 40.08 1.73
99 100 6.093404 TGTTTCAACGACAAACAAGCAATAA 58.907 32.000 8.27 0.00 40.08 1.40
100 101 5.641709 TGTTTCAACGACAAACAAGCAATA 58.358 33.333 8.27 0.00 40.08 1.90
101 102 4.489810 TGTTTCAACGACAAACAAGCAAT 58.510 34.783 8.27 0.00 40.08 3.56
102 103 3.902150 TGTTTCAACGACAAACAAGCAA 58.098 36.364 8.27 0.00 40.08 3.91
103 104 3.560902 TGTTTCAACGACAAACAAGCA 57.439 38.095 8.27 0.00 40.08 3.91
104 105 4.778773 GCAATGTTTCAACGACAAACAAGC 60.779 41.667 12.82 14.47 44.73 4.01
105 106 4.546081 CGCAATGTTTCAACGACAAACAAG 60.546 41.667 12.82 10.45 44.73 3.16
106 107 3.301906 CGCAATGTTTCAACGACAAACAA 59.698 39.130 12.82 1.63 44.73 2.83
107 108 2.848887 CGCAATGTTTCAACGACAAACA 59.151 40.909 11.70 11.70 45.43 2.83
108 109 3.102276 TCGCAATGTTTCAACGACAAAC 58.898 40.909 0.00 0.00 34.79 2.93
109 110 3.406728 TCGCAATGTTTCAACGACAAA 57.593 38.095 0.00 0.00 0.00 2.83
110 111 3.406728 TTCGCAATGTTTCAACGACAA 57.593 38.095 0.00 0.00 31.61 3.18
111 112 3.406728 TTTCGCAATGTTTCAACGACA 57.593 38.095 0.00 0.00 31.61 4.35
112 113 4.032355 TCTTTTCGCAATGTTTCAACGAC 58.968 39.130 0.00 0.00 31.61 4.34
113 114 4.278858 CTCTTTTCGCAATGTTTCAACGA 58.721 39.130 0.00 0.00 0.00 3.85
114 115 3.421888 CCTCTTTTCGCAATGTTTCAACG 59.578 43.478 0.00 0.00 0.00 4.10
115 116 4.606961 TCCTCTTTTCGCAATGTTTCAAC 58.393 39.130 0.00 0.00 0.00 3.18
116 117 4.909696 TCCTCTTTTCGCAATGTTTCAA 57.090 36.364 0.00 0.00 0.00 2.69
117 118 4.097135 TGTTCCTCTTTTCGCAATGTTTCA 59.903 37.500 0.00 0.00 0.00 2.69
118 119 4.606961 TGTTCCTCTTTTCGCAATGTTTC 58.393 39.130 0.00 0.00 0.00 2.78
119 120 4.647424 TGTTCCTCTTTTCGCAATGTTT 57.353 36.364 0.00 0.00 0.00 2.83
120 121 4.853924 ATGTTCCTCTTTTCGCAATGTT 57.146 36.364 0.00 0.00 0.00 2.71
121 122 4.853924 AATGTTCCTCTTTTCGCAATGT 57.146 36.364 0.00 0.00 0.00 2.71
122 123 5.942872 AGTAATGTTCCTCTTTTCGCAATG 58.057 37.500 0.00 0.00 0.00 2.82
123 124 6.206634 TGAAGTAATGTTCCTCTTTTCGCAAT 59.793 34.615 0.00 0.00 0.00 3.56
124 125 5.529430 TGAAGTAATGTTCCTCTTTTCGCAA 59.471 36.000 0.00 0.00 0.00 4.85
125 126 5.060506 TGAAGTAATGTTCCTCTTTTCGCA 58.939 37.500 0.00 0.00 0.00 5.10
126 127 5.408604 TCTGAAGTAATGTTCCTCTTTTCGC 59.591 40.000 0.00 0.00 0.00 4.70
127 128 7.331934 TGATCTGAAGTAATGTTCCTCTTTTCG 59.668 37.037 0.00 0.00 0.00 3.46
128 129 8.447053 GTGATCTGAAGTAATGTTCCTCTTTTC 58.553 37.037 0.00 0.00 0.00 2.29
129 130 7.939039 TGTGATCTGAAGTAATGTTCCTCTTTT 59.061 33.333 0.00 0.00 0.00 2.27
130 131 7.453393 TGTGATCTGAAGTAATGTTCCTCTTT 58.547 34.615 0.00 0.00 0.00 2.52
131 132 7.009179 TGTGATCTGAAGTAATGTTCCTCTT 57.991 36.000 0.00 0.00 0.00 2.85
132 133 6.438741 TCTGTGATCTGAAGTAATGTTCCTCT 59.561 38.462 0.00 0.00 0.00 3.69
133 134 6.634805 TCTGTGATCTGAAGTAATGTTCCTC 58.365 40.000 0.00 0.00 0.00 3.71
134 135 6.611613 TCTGTGATCTGAAGTAATGTTCCT 57.388 37.500 0.00 0.00 0.00 3.36
135 136 7.011857 GGATTCTGTGATCTGAAGTAATGTTCC 59.988 40.741 0.00 0.00 35.59 3.62
136 137 7.550551 TGGATTCTGTGATCTGAAGTAATGTTC 59.449 37.037 0.00 0.00 35.59 3.18
137 138 7.397221 TGGATTCTGTGATCTGAAGTAATGTT 58.603 34.615 0.00 0.00 35.59 2.71
138 139 6.950842 TGGATTCTGTGATCTGAAGTAATGT 58.049 36.000 0.00 0.00 35.59 2.71
139 140 7.466996 GCTTGGATTCTGTGATCTGAAGTAATG 60.467 40.741 0.00 0.00 35.59 1.90
140 141 6.541641 GCTTGGATTCTGTGATCTGAAGTAAT 59.458 38.462 0.00 0.00 35.59 1.89
141 142 5.877012 GCTTGGATTCTGTGATCTGAAGTAA 59.123 40.000 0.00 0.00 35.59 2.24
142 143 5.046376 TGCTTGGATTCTGTGATCTGAAGTA 60.046 40.000 0.00 0.00 35.59 2.24
143 144 4.260170 GCTTGGATTCTGTGATCTGAAGT 58.740 43.478 0.00 0.00 35.59 3.01
144 145 4.259356 TGCTTGGATTCTGTGATCTGAAG 58.741 43.478 0.00 0.00 35.59 3.02
145 146 4.290711 TGCTTGGATTCTGTGATCTGAA 57.709 40.909 0.00 0.00 36.32 3.02
146 147 3.986996 TGCTTGGATTCTGTGATCTGA 57.013 42.857 0.00 0.00 0.00 3.27
147 148 4.008330 AGTTGCTTGGATTCTGTGATCTG 58.992 43.478 0.00 0.00 0.00 2.90
148 149 4.298103 AGTTGCTTGGATTCTGTGATCT 57.702 40.909 0.00 0.00 0.00 2.75
149 150 4.730657 CAAGTTGCTTGGATTCTGTGATC 58.269 43.478 1.23 0.00 37.77 2.92
150 151 3.057033 GCAAGTTGCTTGGATTCTGTGAT 60.057 43.478 20.71 0.00 41.31 3.06
151 152 2.294233 GCAAGTTGCTTGGATTCTGTGA 59.706 45.455 20.71 0.00 41.31 3.58
152 153 2.034939 TGCAAGTTGCTTGGATTCTGTG 59.965 45.455 27.17 0.00 45.31 3.66
153 154 2.309613 TGCAAGTTGCTTGGATTCTGT 58.690 42.857 27.17 0.00 45.31 3.41
154 155 3.314553 CTTGCAAGTTGCTTGGATTCTG 58.685 45.455 27.17 4.73 45.31 3.02
155 156 2.288640 GCTTGCAAGTTGCTTGGATTCT 60.289 45.455 27.17 0.00 45.31 2.40
156 157 2.064014 GCTTGCAAGTTGCTTGGATTC 58.936 47.619 27.17 2.58 45.31 2.52
157 158 1.603678 CGCTTGCAAGTTGCTTGGATT 60.604 47.619 27.17 0.00 45.31 3.01
158 159 0.038892 CGCTTGCAAGTTGCTTGGAT 60.039 50.000 27.17 0.00 45.31 3.41
159 160 1.100463 TCGCTTGCAAGTTGCTTGGA 61.100 50.000 27.17 16.14 45.31 3.53
160 161 0.662374 CTCGCTTGCAAGTTGCTTGG 60.662 55.000 27.17 17.38 45.31 3.61
161 162 0.029834 ACTCGCTTGCAAGTTGCTTG 59.970 50.000 27.17 19.70 45.31 4.01
162 163 0.740737 AACTCGCTTGCAAGTTGCTT 59.259 45.000 27.17 9.68 45.31 3.91
163 164 0.740737 AAACTCGCTTGCAAGTTGCT 59.259 45.000 27.17 3.49 45.31 3.91
164 165 0.848305 CAAACTCGCTTGCAAGTTGC 59.152 50.000 26.55 21.17 45.29 4.17
165 166 1.202290 ACCAAACTCGCTTGCAAGTTG 60.202 47.619 26.55 20.65 35.93 3.16
166 167 1.065551 GACCAAACTCGCTTGCAAGTT 59.934 47.619 26.55 11.84 37.32 2.66
167 168 0.663153 GACCAAACTCGCTTGCAAGT 59.337 50.000 26.55 5.56 0.00 3.16
168 169 0.662619 TGACCAAACTCGCTTGCAAG 59.337 50.000 22.44 22.44 0.00 4.01
169 170 1.001487 CATGACCAAACTCGCTTGCAA 60.001 47.619 0.00 0.00 0.00 4.08
170 171 0.592637 CATGACCAAACTCGCTTGCA 59.407 50.000 0.00 0.00 0.00 4.08
171 172 0.593128 ACATGACCAAACTCGCTTGC 59.407 50.000 0.00 0.00 0.00 4.01
172 173 2.290367 TCAACATGACCAAACTCGCTTG 59.710 45.455 0.00 0.00 0.00 4.01
173 174 2.571212 TCAACATGACCAAACTCGCTT 58.429 42.857 0.00 0.00 0.00 4.68
174 175 2.254546 TCAACATGACCAAACTCGCT 57.745 45.000 0.00 0.00 0.00 4.93
175 176 3.559238 AATCAACATGACCAAACTCGC 57.441 42.857 0.00 0.00 0.00 5.03
176 177 6.421377 TGATAATCAACATGACCAAACTCG 57.579 37.500 0.00 0.00 0.00 4.18
177 178 6.127925 TGCTGATAATCAACATGACCAAACTC 60.128 38.462 0.00 0.00 0.00 3.01
178 179 5.711506 TGCTGATAATCAACATGACCAAACT 59.288 36.000 0.00 0.00 0.00 2.66
179 180 5.953183 TGCTGATAATCAACATGACCAAAC 58.047 37.500 0.00 0.00 0.00 2.93
180 181 6.587206 TTGCTGATAATCAACATGACCAAA 57.413 33.333 0.00 0.00 0.00 3.28
181 182 6.778834 ATTGCTGATAATCAACATGACCAA 57.221 33.333 0.00 0.00 0.00 3.67
182 183 9.571816 TTATATTGCTGATAATCAACATGACCA 57.428 29.630 0.00 0.00 0.00 4.02
200 201 9.883142 ACCTCATTAGCTTCTCTATTATATTGC 57.117 33.333 0.00 0.00 0.00 3.56
203 204 8.482128 GCCACCTCATTAGCTTCTCTATTATAT 58.518 37.037 0.00 0.00 0.00 0.86
204 205 7.454694 TGCCACCTCATTAGCTTCTCTATTATA 59.545 37.037 0.00 0.00 0.00 0.98
205 206 6.270927 TGCCACCTCATTAGCTTCTCTATTAT 59.729 38.462 0.00 0.00 0.00 1.28
206 207 5.602561 TGCCACCTCATTAGCTTCTCTATTA 59.397 40.000 0.00 0.00 0.00 0.98
207 208 4.410228 TGCCACCTCATTAGCTTCTCTATT 59.590 41.667 0.00 0.00 0.00 1.73
208 209 3.969976 TGCCACCTCATTAGCTTCTCTAT 59.030 43.478 0.00 0.00 0.00 1.98
209 210 3.374764 TGCCACCTCATTAGCTTCTCTA 58.625 45.455 0.00 0.00 0.00 2.43
210 211 2.191400 TGCCACCTCATTAGCTTCTCT 58.809 47.619 0.00 0.00 0.00 3.10
211 212 2.698855 TGCCACCTCATTAGCTTCTC 57.301 50.000 0.00 0.00 0.00 2.87
212 213 3.439857 TTTGCCACCTCATTAGCTTCT 57.560 42.857 0.00 0.00 0.00 2.85
213 214 4.082026 ACAATTTGCCACCTCATTAGCTTC 60.082 41.667 0.00 0.00 0.00 3.86
214 215 3.834231 ACAATTTGCCACCTCATTAGCTT 59.166 39.130 0.00 0.00 0.00 3.74
215 216 3.434309 ACAATTTGCCACCTCATTAGCT 58.566 40.909 0.00 0.00 0.00 3.32
216 217 3.445096 AGACAATTTGCCACCTCATTAGC 59.555 43.478 0.00 0.00 0.00 3.09
217 218 5.220931 GCTAGACAATTTGCCACCTCATTAG 60.221 44.000 0.00 0.00 0.00 1.73
218 219 4.640201 GCTAGACAATTTGCCACCTCATTA 59.360 41.667 0.00 0.00 0.00 1.90
219 220 3.445096 GCTAGACAATTTGCCACCTCATT 59.555 43.478 0.00 0.00 0.00 2.57
220 221 3.019564 GCTAGACAATTTGCCACCTCAT 58.980 45.455 0.00 0.00 0.00 2.90
221 222 2.040278 AGCTAGACAATTTGCCACCTCA 59.960 45.455 0.00 0.00 0.00 3.86
222 223 2.716217 AGCTAGACAATTTGCCACCTC 58.284 47.619 0.00 0.00 0.00 3.85
223 224 2.887151 AGCTAGACAATTTGCCACCT 57.113 45.000 0.00 0.00 0.00 4.00
224 225 4.010349 ACTTAGCTAGACAATTTGCCACC 58.990 43.478 0.00 0.00 0.00 4.61
225 226 4.938226 AGACTTAGCTAGACAATTTGCCAC 59.062 41.667 0.00 0.00 0.00 5.01
226 227 5.165961 AGACTTAGCTAGACAATTTGCCA 57.834 39.130 0.00 0.00 0.00 4.92
227 228 5.178797 TGAGACTTAGCTAGACAATTTGCC 58.821 41.667 0.00 0.00 0.00 4.52
228 229 6.917217 ATGAGACTTAGCTAGACAATTTGC 57.083 37.500 0.00 0.00 0.00 3.68
230 231 9.103861 GCTAAATGAGACTTAGCTAGACAATTT 57.896 33.333 7.21 0.90 45.13 1.82
231 232 8.655651 GCTAAATGAGACTTAGCTAGACAATT 57.344 34.615 7.21 0.00 45.13 2.32
243 244 9.200817 AGAAAGATCTAGAGCTAAATGAGACTT 57.799 33.333 11.64 0.00 32.88 3.01
244 245 8.766994 AGAAAGATCTAGAGCTAAATGAGACT 57.233 34.615 11.64 0.07 32.88 3.24
245 246 8.082242 GGAGAAAGATCTAGAGCTAAATGAGAC 58.918 40.741 11.64 0.00 35.54 3.36
246 247 8.004215 AGGAGAAAGATCTAGAGCTAAATGAGA 58.996 37.037 11.64 0.00 35.54 3.27
247 248 8.181904 AGGAGAAAGATCTAGAGCTAAATGAG 57.818 38.462 11.64 0.00 35.54 2.90
248 249 8.546083 AAGGAGAAAGATCTAGAGCTAAATGA 57.454 34.615 11.64 0.00 35.54 2.57
249 250 9.612066 AAAAGGAGAAAGATCTAGAGCTAAATG 57.388 33.333 11.64 0.00 35.54 2.32
250 251 9.612066 CAAAAGGAGAAAGATCTAGAGCTAAAT 57.388 33.333 11.64 0.52 35.54 1.40
251 252 8.043710 CCAAAAGGAGAAAGATCTAGAGCTAAA 58.956 37.037 11.64 0.00 35.54 1.85
252 253 7.365117 CCCAAAAGGAGAAAGATCTAGAGCTAA 60.365 40.741 11.64 0.00 38.24 3.09
253 254 6.098982 CCCAAAAGGAGAAAGATCTAGAGCTA 59.901 42.308 11.64 0.00 38.24 3.32
254 255 5.104569 CCCAAAAGGAGAAAGATCTAGAGCT 60.105 44.000 4.23 4.23 38.24 4.09
255 256 5.104735 TCCCAAAAGGAGAAAGATCTAGAGC 60.105 44.000 0.00 0.00 40.93 4.09
256 257 6.552445 TCCCAAAAGGAGAAAGATCTAGAG 57.448 41.667 0.00 0.00 40.93 2.43
269 270 2.307686 GGATGGTAGTGTCCCAAAAGGA 59.692 50.000 0.00 0.00 44.91 3.36
270 271 2.723273 GGATGGTAGTGTCCCAAAAGG 58.277 52.381 0.00 0.00 35.14 3.11
271 272 2.027561 TCGGATGGTAGTGTCCCAAAAG 60.028 50.000 0.00 0.00 35.14 2.27
272 273 1.979308 TCGGATGGTAGTGTCCCAAAA 59.021 47.619 0.00 0.00 35.14 2.44
273 274 1.553248 CTCGGATGGTAGTGTCCCAAA 59.447 52.381 0.00 0.00 35.14 3.28
274 275 1.191535 CTCGGATGGTAGTGTCCCAA 58.808 55.000 0.00 0.00 35.14 4.12
275 276 0.333652 TCTCGGATGGTAGTGTCCCA 59.666 55.000 0.00 0.00 36.16 4.37
276 277 0.745468 GTCTCGGATGGTAGTGTCCC 59.255 60.000 0.00 0.00 0.00 4.46
277 278 1.765230 AGTCTCGGATGGTAGTGTCC 58.235 55.000 0.00 0.00 0.00 4.02
278 279 3.870633 AAAGTCTCGGATGGTAGTGTC 57.129 47.619 0.00 0.00 0.00 3.67
279 280 5.934402 AATAAAGTCTCGGATGGTAGTGT 57.066 39.130 0.00 0.00 0.00 3.55
280 281 6.338146 TGAAATAAAGTCTCGGATGGTAGTG 58.662 40.000 0.00 0.00 0.00 2.74
281 282 6.540438 TGAAATAAAGTCTCGGATGGTAGT 57.460 37.500 0.00 0.00 0.00 2.73
282 283 9.712305 AATATGAAATAAAGTCTCGGATGGTAG 57.288 33.333 0.00 0.00 29.06 3.18
284 285 8.840321 CAAATATGAAATAAAGTCTCGGATGGT 58.160 33.333 0.00 0.00 29.06 3.55
285 286 7.805071 GCAAATATGAAATAAAGTCTCGGATGG 59.195 37.037 0.00 0.00 29.06 3.51
286 287 8.562892 AGCAAATATGAAATAAAGTCTCGGATG 58.437 33.333 0.00 0.00 29.06 3.51
287 288 8.682936 AGCAAATATGAAATAAAGTCTCGGAT 57.317 30.769 0.00 0.00 29.06 4.18
288 289 8.397906 CAAGCAAATATGAAATAAAGTCTCGGA 58.602 33.333 0.00 0.00 29.06 4.55
289 290 8.184192 ACAAGCAAATATGAAATAAAGTCTCGG 58.816 33.333 0.00 0.00 29.06 4.63
306 307 9.060347 ACATCGAGATATCATTTACAAGCAAAT 57.940 29.630 5.32 0.00 0.00 2.32
307 308 8.437360 ACATCGAGATATCATTTACAAGCAAA 57.563 30.769 5.32 0.00 0.00 3.68
308 309 8.337532 CAACATCGAGATATCATTTACAAGCAA 58.662 33.333 5.32 0.00 0.00 3.91
309 310 7.495606 ACAACATCGAGATATCATTTACAAGCA 59.504 33.333 5.32 0.00 0.00 3.91
310 311 7.795734 CACAACATCGAGATATCATTTACAAGC 59.204 37.037 5.32 0.00 0.00 4.01
311 312 9.034544 TCACAACATCGAGATATCATTTACAAG 57.965 33.333 5.32 0.00 0.00 3.16
312 313 8.940768 TCACAACATCGAGATATCATTTACAA 57.059 30.769 5.32 0.00 0.00 2.41
313 314 8.981647 CATCACAACATCGAGATATCATTTACA 58.018 33.333 5.32 0.00 0.00 2.41
314 315 9.196552 TCATCACAACATCGAGATATCATTTAC 57.803 33.333 5.32 0.00 0.00 2.01
315 316 9.762933 TTCATCACAACATCGAGATATCATTTA 57.237 29.630 5.32 0.00 0.00 1.40
316 317 8.667076 TTCATCACAACATCGAGATATCATTT 57.333 30.769 5.32 0.00 0.00 2.32
317 318 8.843885 ATTCATCACAACATCGAGATATCATT 57.156 30.769 5.32 0.00 0.00 2.57
318 319 9.933723 TTATTCATCACAACATCGAGATATCAT 57.066 29.630 5.32 0.00 0.00 2.45
319 320 9.415544 CTTATTCATCACAACATCGAGATATCA 57.584 33.333 5.32 0.00 0.00 2.15
320 321 8.867935 CCTTATTCATCACAACATCGAGATATC 58.132 37.037 0.00 0.00 0.00 1.63
321 322 8.370940 ACCTTATTCATCACAACATCGAGATAT 58.629 33.333 0.00 0.00 0.00 1.63
322 323 7.726216 ACCTTATTCATCACAACATCGAGATA 58.274 34.615 0.00 0.00 0.00 1.98
323 324 6.586344 ACCTTATTCATCACAACATCGAGAT 58.414 36.000 0.00 0.00 0.00 2.75
324 325 5.977635 ACCTTATTCATCACAACATCGAGA 58.022 37.500 0.00 0.00 0.00 4.04
325 326 6.536582 AGAACCTTATTCATCACAACATCGAG 59.463 38.462 0.00 0.00 0.00 4.04
326 327 6.406370 AGAACCTTATTCATCACAACATCGA 58.594 36.000 0.00 0.00 0.00 3.59
327 328 6.668541 AGAACCTTATTCATCACAACATCG 57.331 37.500 0.00 0.00 0.00 3.84
385 386 8.680039 ATTTGCAAGAATCATTTCCTCAAAAA 57.320 26.923 0.00 0.00 33.06 1.94
386 387 9.775854 TTATTTGCAAGAATCATTTCCTCAAAA 57.224 25.926 0.00 0.00 33.06 2.44
387 388 9.775854 TTTATTTGCAAGAATCATTTCCTCAAA 57.224 25.926 0.00 0.00 33.45 2.69
388 389 9.775854 TTTTATTTGCAAGAATCATTTCCTCAA 57.224 25.926 0.00 0.00 31.84 3.02
389 390 9.775854 TTTTTATTTGCAAGAATCATTTCCTCA 57.224 25.926 0.00 0.00 31.84 3.86
391 392 9.783081 ACTTTTTATTTGCAAGAATCATTTCCT 57.217 25.926 0.00 0.00 31.84 3.36
459 461 7.571983 GCCGAGTATTTGACATAAATCCATCAG 60.572 40.741 0.00 0.00 0.00 2.90
460 462 6.204688 GCCGAGTATTTGACATAAATCCATCA 59.795 38.462 0.00 0.00 0.00 3.07
466 468 5.815740 ACGAAGCCGAGTATTTGACATAAAT 59.184 36.000 0.00 0.00 39.50 1.40
480 482 1.590238 CTAGAATTGCACGAAGCCGAG 59.410 52.381 0.00 0.00 44.83 4.63
482 484 1.324736 GACTAGAATTGCACGAAGCCG 59.675 52.381 0.00 0.00 44.83 5.52
485 487 3.369147 CCAGTGACTAGAATTGCACGAAG 59.631 47.826 0.00 0.00 36.43 3.79
486 488 3.244078 ACCAGTGACTAGAATTGCACGAA 60.244 43.478 0.00 0.00 36.43 3.85
488 490 2.688507 ACCAGTGACTAGAATTGCACG 58.311 47.619 0.00 0.00 36.43 5.34
497 499 5.664457 TGAGCATTCATAACCAGTGACTAG 58.336 41.667 0.00 0.00 0.00 2.57
498 500 5.675684 TGAGCATTCATAACCAGTGACTA 57.324 39.130 0.00 0.00 0.00 2.59
501 503 5.101648 TCATGAGCATTCATAACCAGTGA 57.898 39.130 0.00 0.00 42.12 3.41
504 506 4.333649 ACGTTCATGAGCATTCATAACCAG 59.666 41.667 10.36 0.00 42.12 4.00
525 527 9.781834 TTTTGTATATTAGAAAATTGAGGCACG 57.218 29.630 0.00 0.00 0.00 5.34
619 652 3.886505 AGTGACTAGCCTGCATACTAGAC 59.113 47.826 23.07 18.59 38.53 2.59
620 653 4.138290 GAGTGACTAGCCTGCATACTAGA 58.862 47.826 23.07 5.62 38.53 2.43
621 654 3.254657 GGAGTGACTAGCCTGCATACTAG 59.745 52.174 17.34 17.34 41.38 2.57
622 655 3.223435 GGAGTGACTAGCCTGCATACTA 58.777 50.000 0.00 0.00 0.00 1.82
623 656 2.035632 GGAGTGACTAGCCTGCATACT 58.964 52.381 0.00 0.00 0.00 2.12
624 657 1.757118 TGGAGTGACTAGCCTGCATAC 59.243 52.381 0.00 0.00 0.00 2.39
625 658 2.159179 TGGAGTGACTAGCCTGCATA 57.841 50.000 0.00 0.00 0.00 3.14
626 659 1.279496 TTGGAGTGACTAGCCTGCAT 58.721 50.000 0.00 0.00 0.00 3.96
639 672 5.079643 AGGCTTGTTGATGTATTTTGGAGT 58.920 37.500 0.00 0.00 0.00 3.85
659 692 6.923508 AGTTTTGATTTTGTGTAGCTAAAGGC 59.076 34.615 0.00 0.00 42.19 4.35
667 700 9.573133 AGAAGTTGAAGTTTTGATTTTGTGTAG 57.427 29.630 0.00 0.00 0.00 2.74
690 723 0.249676 TGTTGGCGCGGGTAATAGAA 59.750 50.000 8.83 0.00 0.00 2.10
699 732 2.855728 GAAGCTGAATGTTGGCGCGG 62.856 60.000 8.83 0.00 0.00 6.46
700 733 1.512734 GAAGCTGAATGTTGGCGCG 60.513 57.895 0.00 0.00 0.00 6.86
707 740 3.228188 TGGAACTTGGAAGCTGAATGT 57.772 42.857 0.00 0.00 0.00 2.71
714 747 3.518634 TTGTTGTTGGAACTTGGAAGC 57.481 42.857 0.00 0.00 0.00 3.86
725 758 4.048504 GACCCTCGAAAAATTGTTGTTGG 58.951 43.478 0.00 0.00 0.00 3.77
728 761 3.207778 TCGACCCTCGAAAAATTGTTGT 58.792 40.909 0.00 0.00 46.90 3.32
729 762 3.889196 TCGACCCTCGAAAAATTGTTG 57.111 42.857 0.00 0.00 46.90 3.33
742 775 2.322658 TGGTAGTTGAAAGTCGACCCT 58.677 47.619 13.01 0.00 31.00 4.34
745 778 9.362539 TCTATTTATTGGTAGTTGAAAGTCGAC 57.637 33.333 7.70 7.70 0.00 4.20
769 803 9.883142 TTTTTATTTTTCAGTGTTGGAATGTCT 57.117 25.926 0.00 0.00 0.00 3.41
822 1241 5.466393 GGCAGTGTCTTTGCAAATATTTGTT 59.534 36.000 25.15 0.00 43.28 2.83
824 1243 4.989797 TGGCAGTGTCTTTGCAAATATTTG 59.010 37.500 21.54 21.54 43.28 2.32
826 1245 4.870123 TGGCAGTGTCTTTGCAAATATT 57.130 36.364 13.23 0.00 43.28 1.28
827 1246 4.870123 TTGGCAGTGTCTTTGCAAATAT 57.130 36.364 13.23 0.00 43.28 1.28
828 1247 4.662468 TTTGGCAGTGTCTTTGCAAATA 57.338 36.364 13.23 2.14 43.28 1.40
829 1248 3.540314 TTTGGCAGTGTCTTTGCAAAT 57.460 38.095 13.23 0.00 43.28 2.32
830 1249 3.260740 CTTTTGGCAGTGTCTTTGCAAA 58.739 40.909 12.14 12.14 43.28 3.68
832 1251 1.471327 GCTTTTGGCAGTGTCTTTGCA 60.471 47.619 0.00 0.00 43.28 4.08
833 1252 1.211743 GCTTTTGGCAGTGTCTTTGC 58.788 50.000 0.00 0.00 41.35 3.68
834 1253 1.856802 GGCTTTTGGCAGTGTCTTTG 58.143 50.000 0.00 0.00 45.26 2.77
862 1285 4.442052 GGCTCTGCCTTCTCTTTTGTTTTT 60.442 41.667 0.73 0.00 46.69 1.94
904 1336 3.365265 CAAGTCGCAACTGGGCCC 61.365 66.667 17.59 17.59 35.36 5.80
916 1348 3.959991 GAGGTCCCCGCTGCAAGTC 62.960 68.421 0.00 0.00 35.30 3.01
918 1350 3.672295 GAGAGGTCCCCGCTGCAAG 62.672 68.421 0.00 0.00 32.83 4.01
951 1385 1.534235 ACTCCGGCAGAGAGGTTGT 60.534 57.895 4.40 0.00 46.50 3.32
957 1391 1.379176 CTCTGGACTCCGGCAGAGA 60.379 63.158 24.60 9.00 46.50 3.10
1011 1445 4.511137 GGGGTAGGGGAGGGGGAC 62.511 77.778 0.00 0.00 0.00 4.46
1878 2318 4.667519 AGAGTTATATGTCACCCGGTTC 57.332 45.455 0.00 0.00 0.00 3.62
1899 2339 3.749088 CCGCACTGTAATACCTCACAAAA 59.251 43.478 0.00 0.00 0.00 2.44
1998 2438 6.406692 AGCGAATGTATAAGAGGTGTGTAT 57.593 37.500 0.00 0.00 0.00 2.29
2088 2528 0.400815 TGTAGGTGTGTTCCCTGGGT 60.401 55.000 13.56 0.00 33.35 4.51
2127 2567 2.519541 TCCTCATCGGCCTCCTCG 60.520 66.667 0.00 0.00 0.00 4.63
2220 2660 0.463654 TCACTGGTCGCATTATGGGC 60.464 55.000 4.28 0.40 0.00 5.36
2367 2807 1.153289 CCAAGGCACTCCCGATCAG 60.153 63.158 0.00 0.00 38.49 2.90
2382 2822 3.586470 TCAACAAAGCTTCCTACCCAA 57.414 42.857 0.00 0.00 0.00 4.12
2390 2830 3.998099 AGGCTCTTTCAACAAAGCTTC 57.002 42.857 0.00 0.00 39.23 3.86
2446 2886 6.474751 GGCTTGAATCTCATTTCATTAAGTGC 59.525 38.462 0.00 0.00 35.64 4.40
2452 2892 6.363167 TTTGGGCTTGAATCTCATTTCATT 57.637 33.333 0.00 0.00 35.64 2.57
2466 2907 0.539051 TTGGTGGTGTTTTGGGCTTG 59.461 50.000 0.00 0.00 0.00 4.01
2503 2944 2.224523 ACTTCATCTTTGCCTCGGAACA 60.225 45.455 0.00 0.00 0.00 3.18
2508 2949 2.099141 TCCACTTCATCTTTGCCTCG 57.901 50.000 0.00 0.00 0.00 4.63
2605 3057 4.083565 ACCACTTGTAAACAACAACAGGT 58.916 39.130 0.00 4.51 43.22 4.00
2659 3111 1.879380 TGGTCATGCTGCAAACTACAC 59.121 47.619 6.36 0.00 0.00 2.90
2715 3167 7.274447 AGAAAAGCAAATTCCTTGTGATGAAA 58.726 30.769 0.00 0.00 37.36 2.69
2734 3186 5.223449 TGTGTAGACCTGGGTAAGAAAAG 57.777 43.478 0.00 0.00 0.00 2.27
2741 3193 3.512496 TGAACATGTGTAGACCTGGGTA 58.488 45.455 0.00 0.00 0.00 3.69
2749 3201 6.413783 TCTGGTAAACTGAACATGTGTAGA 57.586 37.500 14.53 0.00 0.00 2.59
2790 3242 5.866633 TGAACAGAAAACACACAATTTCACC 59.133 36.000 0.00 0.00 37.87 4.02
2886 3338 8.562892 CCCAAACATTATATAGCAACAGAGAAG 58.437 37.037 0.00 0.00 0.00 2.85
2892 3344 9.814899 CAAATTCCCAAACATTATATAGCAACA 57.185 29.630 0.00 0.00 0.00 3.33
2911 3363 1.336702 TGCGCATGTTCACCAAATTCC 60.337 47.619 5.66 0.00 0.00 3.01
2964 3416 3.250762 TGTGTGACTTTCATACAGCTTGC 59.749 43.478 1.99 0.00 42.30 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.