Multiple sequence alignment - TraesCS4D01G064800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G064800 chr4D 100.000 3583 0 0 1 3583 40126223 40122641 0.000000e+00 6617.0
1 TraesCS4D01G064800 chr4D 97.059 102 3 0 3482 3583 154011609 154011508 4.760000e-39 172.0
2 TraesCS4D01G064800 chr4D 98.864 88 1 0 1789 1876 40124283 40124196 1.330000e-34 158.0
3 TraesCS4D01G064800 chr4D 98.864 88 1 0 1941 2028 40124435 40124348 1.330000e-34 158.0
4 TraesCS4D01G064800 chr4D 100.000 66 0 0 1838 1903 40124321 40124256 4.860000e-24 122.0
5 TraesCS4D01G064800 chr4D 100.000 66 0 0 1903 1968 40124386 40124321 4.860000e-24 122.0
6 TraesCS4D01G064800 chr4D 100.000 39 0 0 1903 1941 40124234 40124196 4.960000e-09 73.1
7 TraesCS4D01G064800 chr4D 100.000 39 0 0 1990 2028 40124321 40124283 4.960000e-09 73.1
8 TraesCS4D01G064800 chr4D 100.000 28 0 0 1876 1903 40124435 40124408 6.000000e-03 52.8
9 TraesCS4D01G064800 chr4A 93.605 2205 77 24 820 2983 559945127 559947308 0.000000e+00 3232.0
10 TraesCS4D01G064800 chr4A 97.647 85 2 0 1944 2028 559946127 559946211 2.880000e-31 147.0
11 TraesCS4D01G064800 chr4A 94.318 88 4 1 1789 1876 559946276 559946362 2.240000e-27 134.0
12 TraesCS4D01G064800 chr4A 100.000 66 0 0 1903 1968 559946173 559946238 4.860000e-24 122.0
13 TraesCS4D01G064800 chr4A 98.485 66 1 0 1838 1903 559946238 559946303 2.260000e-22 117.0
14 TraesCS4D01G064800 chr4A 100.000 39 0 0 1990 2028 559946238 559946276 4.960000e-09 73.1
15 TraesCS4D01G064800 chr4B 92.935 1288 48 22 1615 2863 58598955 58597672 0.000000e+00 1834.0
16 TraesCS4D01G064800 chr4B 92.523 963 35 12 644 1583 58599902 58598954 0.000000e+00 1345.0
17 TraesCS4D01G064800 chr4B 82.485 491 37 22 2837 3316 58597664 58597212 5.610000e-103 385.0
18 TraesCS4D01G064800 chr4B 81.670 491 41 22 2837 3316 58569307 58568855 2.630000e-96 363.0
19 TraesCS4D01G064800 chr4B 96.825 126 4 0 1903 2028 58598718 58598593 1.010000e-50 211.0
20 TraesCS4D01G064800 chr4B 96.522 115 4 0 1789 1903 58598680 58598566 1.310000e-44 191.0
21 TraesCS4D01G064800 chr5A 87.624 703 30 15 2830 3485 263508685 263509377 0.000000e+00 763.0
22 TraesCS4D01G064800 chrUn 93.169 527 23 7 1192 1713 362176457 362176975 0.000000e+00 761.0
23 TraesCS4D01G064800 chrUn 86.232 138 11 6 1713 1844 362177004 362177139 3.730000e-30 143.0
24 TraesCS4D01G064800 chr5D 93.169 527 23 7 1192 1713 254898187 254898705 0.000000e+00 761.0
25 TraesCS4D01G064800 chr5D 93.169 527 23 7 1192 1713 254901408 254901926 0.000000e+00 761.0
26 TraesCS4D01G064800 chr5D 87.482 703 31 15 2830 3485 154529189 154528497 0.000000e+00 758.0
27 TraesCS4D01G064800 chr5D 91.683 517 25 8 1201 1712 220891171 220891674 0.000000e+00 701.0
28 TraesCS4D01G064800 chr5D 84.583 240 34 3 2344 2582 478965933 478965696 5.980000e-58 235.0
29 TraesCS4D01G064800 chr5D 87.500 136 9 6 1713 1842 220891704 220891837 2.230000e-32 150.0
30 TraesCS4D01G064800 chr5D 86.232 138 11 6 1713 1844 254898734 254898869 3.730000e-30 143.0
31 TraesCS4D01G064800 chr5D 86.232 138 11 6 1713 1844 254901955 254902090 3.730000e-30 143.0
32 TraesCS4D01G064800 chr5D 98.039 51 1 0 1944 1994 220891787 220891837 4.930000e-14 89.8
33 TraesCS4D01G064800 chr5B 87.589 701 30 15 2832 3485 177194406 177195096 0.000000e+00 760.0
34 TraesCS4D01G064800 chr5B 79.812 426 67 13 181 591 544396523 544396944 3.500000e-75 292.0
35 TraesCS4D01G064800 chr5B 82.540 126 16 5 1081 1204 586847516 586847395 4.890000e-19 106.0
36 TraesCS4D01G064800 chr2A 86.000 700 41 22 2830 3484 406455108 406454421 0.000000e+00 697.0
37 TraesCS4D01G064800 chr2A 85.857 700 42 21 2830 3484 394755065 394755752 0.000000e+00 691.0
38 TraesCS4D01G064800 chr6B 84.043 564 77 9 2024 2575 656511369 656511931 6.810000e-147 531.0
39 TraesCS4D01G064800 chr6B 89.673 397 30 7 948 1338 656509516 656509907 2.480000e-136 496.0
40 TraesCS4D01G064800 chr6D 83.741 572 80 9 2017 2575 434019746 434020317 2.450000e-146 529.0
41 TraesCS4D01G064800 chr6D 88.642 405 27 11 948 1338 434017536 434017935 3.240000e-130 475.0
42 TraesCS4D01G064800 chr6A 84.144 555 76 7 2033 2575 580279610 580280164 8.810000e-146 527.0
43 TraesCS4D01G064800 chr6A 90.281 391 29 5 948 1333 580278019 580278405 1.480000e-138 503.0
44 TraesCS4D01G064800 chr6A 79.762 420 70 13 181 591 543536853 543536440 1.260000e-74 291.0
45 TraesCS4D01G064800 chr6A 79.254 429 72 14 173 591 49074311 49074732 2.110000e-72 283.0
46 TraesCS4D01G064800 chr6A 79.335 421 67 18 181 591 569971358 569970948 9.800000e-71 278.0
47 TraesCS4D01G064800 chr6A 95.050 101 5 0 3483 3583 293965370 293965270 3.700000e-35 159.0
48 TraesCS4D01G064800 chr7D 82.629 426 60 7 173 591 139869075 139869493 7.310000e-97 364.0
49 TraesCS4D01G064800 chr7D 80.145 413 58 18 192 589 16273520 16273117 1.630000e-73 287.0
50 TraesCS4D01G064800 chr7D 97.030 101 3 0 3483 3583 210054755 210054655 1.710000e-38 171.0
51 TraesCS4D01G064800 chr7B 81.446 415 61 11 181 589 228275544 228275140 3.450000e-85 326.0
52 TraesCS4D01G064800 chr7B 79.858 422 59 19 181 591 664123642 664123236 5.850000e-73 285.0
53 TraesCS4D01G064800 chr3B 80.861 418 68 10 181 590 739544345 739544758 5.770000e-83 318.0
54 TraesCS4D01G064800 chr3B 91.429 105 9 0 3479 3583 564173063 564172959 1.040000e-30 145.0
55 TraesCS4D01G064800 chr1A 97.170 106 3 0 3478 3583 443197173 443197068 2.840000e-41 180.0
56 TraesCS4D01G064800 chr3D 93.269 104 7 0 3479 3582 148481114 148481217 1.720000e-33 154.0
57 TraesCS4D01G064800 chr3D 92.381 105 8 0 3479 3583 443014026 443014130 2.230000e-32 150.0
58 TraesCS4D01G064800 chr2B 92.000 100 8 0 3481 3580 579979164 579979065 1.340000e-29 141.0
59 TraesCS4D01G064800 chr2D 91.000 100 9 0 3484 3583 631747585 631747684 6.240000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G064800 chr4D 40122641 40126223 3582 True 922.000000 6617 99.716000 1 3583 8 chr4D.!!$R2 3582
1 TraesCS4D01G064800 chr4A 559945127 559947308 2181 False 637.516667 3232 97.342500 820 2983 6 chr4A.!!$F1 2163
2 TraesCS4D01G064800 chr4B 58597212 58599902 2690 True 793.200000 1834 92.258000 644 3316 5 chr4B.!!$R2 2672
3 TraesCS4D01G064800 chr5A 263508685 263509377 692 False 763.000000 763 87.624000 2830 3485 1 chr5A.!!$F1 655
4 TraesCS4D01G064800 chrUn 362176457 362177139 682 False 452.000000 761 89.700500 1192 1844 2 chrUn.!!$F1 652
5 TraesCS4D01G064800 chr5D 154528497 154529189 692 True 758.000000 758 87.482000 2830 3485 1 chr5D.!!$R1 655
6 TraesCS4D01G064800 chr5D 254898187 254902090 3903 False 452.000000 761 89.700500 1192 1844 4 chr5D.!!$F2 652
7 TraesCS4D01G064800 chr5D 220891171 220891837 666 False 313.600000 701 92.407333 1201 1994 3 chr5D.!!$F1 793
8 TraesCS4D01G064800 chr5B 177194406 177195096 690 False 760.000000 760 87.589000 2832 3485 1 chr5B.!!$F1 653
9 TraesCS4D01G064800 chr2A 406454421 406455108 687 True 697.000000 697 86.000000 2830 3484 1 chr2A.!!$R1 654
10 TraesCS4D01G064800 chr2A 394755065 394755752 687 False 691.000000 691 85.857000 2830 3484 1 chr2A.!!$F1 654
11 TraesCS4D01G064800 chr6B 656509516 656511931 2415 False 513.500000 531 86.858000 948 2575 2 chr6B.!!$F1 1627
12 TraesCS4D01G064800 chr6D 434017536 434020317 2781 False 502.000000 529 86.191500 948 2575 2 chr6D.!!$F1 1627
13 TraesCS4D01G064800 chr6A 580278019 580280164 2145 False 515.000000 527 87.212500 948 2575 2 chr6A.!!$F2 1627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.032952 TCTCGCTAAAGCACAACCGT 59.967 50.0 2.44 0.0 42.21 4.83 F
563 564 0.035317 AAGTGGCGTTGATCTCTGCA 59.965 50.0 0.00 0.0 0.00 4.41 F
644 645 0.175760 TCTCACCAAGCTCATACCGC 59.824 55.0 0.00 0.0 0.00 5.68 F
645 646 0.811616 CTCACCAAGCTCATACCGCC 60.812 60.0 0.00 0.0 0.00 6.13 F
2225 7596 1.104630 CTCCTACTTCTGACGGACCC 58.895 60.0 0.00 0.0 0.00 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1608 5677 0.095935 CAAGCAGCGTCCTTGAATCG 59.904 55.000 7.90 0.0 41.64 3.34 R
2225 7596 1.769098 CGGGATCATTCAGTGCTGCG 61.769 60.000 0.00 0.0 0.00 5.18 R
2507 7878 2.173356 ACCATAGCCATTGAGCTTGCTA 59.827 45.455 5.20 0.0 41.41 3.49 R
2568 7939 3.311596 GGCAACAACTAATTACTAGGCCG 59.688 47.826 0.00 0.0 31.14 6.13 R
3543 9001 0.106149 ACACAGGAACGGAACTGACC 59.894 55.000 9.08 0.0 38.09 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.126528 GGGTCGTACCGGATCTGG 58.873 66.667 19.66 19.66 39.83 3.86
19 20 2.496291 GGGTCGTACCGGATCTGGG 61.496 68.421 24.68 13.12 39.83 4.45
20 21 2.496291 GGTCGTACCGGATCTGGGG 61.496 68.421 24.68 13.08 0.00 4.96
21 22 2.836360 TCGTACCGGATCTGGGGC 60.836 66.667 24.68 14.85 0.00 5.80
22 23 3.925090 CGTACCGGATCTGGGGCC 61.925 72.222 24.68 10.46 0.00 5.80
23 24 3.925090 GTACCGGATCTGGGGCCG 61.925 72.222 24.68 3.19 46.80 6.13
50 51 2.764128 TCCAGGGTGGCGGAGATC 60.764 66.667 0.00 0.00 37.47 2.75
51 52 3.866582 CCAGGGTGGCGGAGATCC 61.867 72.222 0.00 0.00 0.00 3.36
61 62 2.423446 GGAGATCCGGCAAGCGAT 59.577 61.111 0.00 0.00 0.00 4.58
62 63 1.958205 GGAGATCCGGCAAGCGATG 60.958 63.158 0.00 0.00 0.00 3.84
63 64 1.227380 GAGATCCGGCAAGCGATGT 60.227 57.895 0.00 0.00 0.00 3.06
64 65 1.493950 GAGATCCGGCAAGCGATGTG 61.494 60.000 0.00 0.00 0.00 3.21
65 66 2.514592 ATCCGGCAAGCGATGTGG 60.515 61.111 0.00 0.00 0.00 4.17
70 71 4.166011 GCAAGCGATGTGGCGGTC 62.166 66.667 0.00 0.00 41.62 4.79
71 72 2.741985 CAAGCGATGTGGCGGTCA 60.742 61.111 0.00 0.00 41.62 4.02
72 73 2.742372 AAGCGATGTGGCGGTCAC 60.742 61.111 5.63 5.63 46.23 3.67
79 80 4.295119 GTGGCGGTCACGAGGTGT 62.295 66.667 0.00 0.00 44.60 4.16
89 90 4.680237 CGAGGTGTGGCGGCTCAA 62.680 66.667 15.70 0.00 0.00 3.02
90 91 2.281484 GAGGTGTGGCGGCTCAAA 60.281 61.111 15.70 0.00 0.00 2.69
91 92 1.675641 GAGGTGTGGCGGCTCAAAT 60.676 57.895 15.70 7.11 0.00 2.32
92 93 1.648467 GAGGTGTGGCGGCTCAAATC 61.648 60.000 15.70 12.25 0.00 2.17
93 94 1.675641 GGTGTGGCGGCTCAAATCT 60.676 57.895 15.70 0.00 0.00 2.40
94 95 1.648467 GGTGTGGCGGCTCAAATCTC 61.648 60.000 15.70 2.79 0.00 2.75
95 96 0.955428 GTGTGGCGGCTCAAATCTCA 60.955 55.000 15.70 0.00 0.00 3.27
96 97 0.035152 TGTGGCGGCTCAAATCTCAT 60.035 50.000 11.62 0.00 0.00 2.90
97 98 0.659957 GTGGCGGCTCAAATCTCATC 59.340 55.000 11.43 0.00 0.00 2.92
98 99 0.543277 TGGCGGCTCAAATCTCATCT 59.457 50.000 11.43 0.00 0.00 2.90
99 100 0.942962 GGCGGCTCAAATCTCATCTG 59.057 55.000 0.00 0.00 0.00 2.90
100 101 0.942962 GCGGCTCAAATCTCATCTGG 59.057 55.000 0.00 0.00 0.00 3.86
101 102 1.473965 GCGGCTCAAATCTCATCTGGA 60.474 52.381 0.00 0.00 0.00 3.86
102 103 2.481854 CGGCTCAAATCTCATCTGGAG 58.518 52.381 0.00 0.00 45.49 3.86
103 104 2.220313 GGCTCAAATCTCATCTGGAGC 58.780 52.381 0.00 0.00 45.18 4.70
104 105 2.158784 GGCTCAAATCTCATCTGGAGCT 60.159 50.000 10.76 0.00 45.22 4.09
105 106 3.543665 GCTCAAATCTCATCTGGAGCTT 58.456 45.455 0.00 0.00 43.70 3.74
106 107 3.946558 GCTCAAATCTCATCTGGAGCTTT 59.053 43.478 0.00 0.00 41.38 3.51
107 108 4.035441 GCTCAAATCTCATCTGGAGCTTTC 59.965 45.833 0.00 0.00 39.32 2.62
108 109 5.430007 CTCAAATCTCATCTGGAGCTTTCT 58.570 41.667 0.00 0.00 39.32 2.52
109 110 5.183969 TCAAATCTCATCTGGAGCTTTCTG 58.816 41.667 0.00 0.00 39.32 3.02
110 111 3.842007 ATCTCATCTGGAGCTTTCTGG 57.158 47.619 0.00 0.00 43.70 3.86
111 112 2.544721 TCTCATCTGGAGCTTTCTGGT 58.455 47.619 0.00 0.00 43.70 4.00
112 113 2.235650 TCTCATCTGGAGCTTTCTGGTG 59.764 50.000 0.00 0.00 43.70 4.17
113 114 1.980765 TCATCTGGAGCTTTCTGGTGT 59.019 47.619 0.00 0.00 0.00 4.16
114 115 2.082231 CATCTGGAGCTTTCTGGTGTG 58.918 52.381 0.00 0.00 0.00 3.82
115 116 0.397941 TCTGGAGCTTTCTGGTGTGG 59.602 55.000 0.00 0.00 0.00 4.17
116 117 0.109342 CTGGAGCTTTCTGGTGTGGT 59.891 55.000 0.00 0.00 0.00 4.16
117 118 0.550914 TGGAGCTTTCTGGTGTGGTT 59.449 50.000 0.00 0.00 0.00 3.67
118 119 0.954452 GGAGCTTTCTGGTGTGGTTG 59.046 55.000 0.00 0.00 0.00 3.77
119 120 1.680338 GAGCTTTCTGGTGTGGTTGT 58.320 50.000 0.00 0.00 0.00 3.32
120 121 1.334869 GAGCTTTCTGGTGTGGTTGTG 59.665 52.381 0.00 0.00 0.00 3.33
121 122 1.102978 GCTTTCTGGTGTGGTTGTGT 58.897 50.000 0.00 0.00 0.00 3.72
122 123 1.202290 GCTTTCTGGTGTGGTTGTGTG 60.202 52.381 0.00 0.00 0.00 3.82
123 124 1.405105 CTTTCTGGTGTGGTTGTGTGG 59.595 52.381 0.00 0.00 0.00 4.17
124 125 0.395036 TTCTGGTGTGGTTGTGTGGG 60.395 55.000 0.00 0.00 0.00 4.61
125 126 2.441164 TGGTGTGGTTGTGTGGGC 60.441 61.111 0.00 0.00 0.00 5.36
126 127 2.123897 GGTGTGGTTGTGTGGGCT 60.124 61.111 0.00 0.00 0.00 5.19
127 128 1.756561 GGTGTGGTTGTGTGGGCTT 60.757 57.895 0.00 0.00 0.00 4.35
128 129 1.733526 GTGTGGTTGTGTGGGCTTC 59.266 57.895 0.00 0.00 0.00 3.86
129 130 1.034838 GTGTGGTTGTGTGGGCTTCA 61.035 55.000 0.00 0.00 0.00 3.02
130 131 1.034838 TGTGGTTGTGTGGGCTTCAC 61.035 55.000 4.24 4.24 46.23 3.18
137 138 4.410400 GTGGGCTTCACGGAGGGG 62.410 72.222 0.00 0.00 36.56 4.79
138 139 4.974438 TGGGCTTCACGGAGGGGT 62.974 66.667 0.00 0.00 0.00 4.95
139 140 3.647771 GGGCTTCACGGAGGGGTT 61.648 66.667 0.00 0.00 0.00 4.11
140 141 2.046217 GGCTTCACGGAGGGGTTC 60.046 66.667 0.00 0.00 0.00 3.62
141 142 2.046217 GCTTCACGGAGGGGTTCC 60.046 66.667 0.00 0.00 43.04 3.62
148 149 2.606826 GGAGGGGTTCCGTGTCCT 60.607 66.667 0.00 0.00 35.91 3.85
149 150 2.657066 GGAGGGGTTCCGTGTCCTC 61.657 68.421 0.00 0.00 43.65 3.71
150 151 2.995574 AGGGGTTCCGTGTCCTCG 60.996 66.667 0.00 0.00 38.33 4.63
184 185 4.874528 GCTCTGGCCATTCCTCTC 57.125 61.111 5.51 0.00 35.26 3.20
185 186 1.227497 GCTCTGGCCATTCCTCTCG 60.227 63.158 5.51 0.00 35.26 4.04
186 187 1.227497 CTCTGGCCATTCCTCTCGC 60.227 63.158 5.51 0.00 35.26 5.03
187 188 1.684386 CTCTGGCCATTCCTCTCGCT 61.684 60.000 5.51 0.00 35.26 4.93
188 189 0.397114 TCTGGCCATTCCTCTCGCTA 60.397 55.000 5.51 0.00 35.26 4.26
189 190 0.465705 CTGGCCATTCCTCTCGCTAA 59.534 55.000 5.51 0.00 35.26 3.09
190 191 0.908910 TGGCCATTCCTCTCGCTAAA 59.091 50.000 0.00 0.00 35.26 1.85
191 192 1.134401 TGGCCATTCCTCTCGCTAAAG 60.134 52.381 0.00 0.00 35.26 1.85
192 193 0.940833 GCCATTCCTCTCGCTAAAGC 59.059 55.000 0.00 0.00 37.78 3.51
193 194 1.743772 GCCATTCCTCTCGCTAAAGCA 60.744 52.381 2.44 0.00 42.21 3.91
194 195 1.936547 CCATTCCTCTCGCTAAAGCAC 59.063 52.381 2.44 0.00 42.21 4.40
195 196 2.621338 CATTCCTCTCGCTAAAGCACA 58.379 47.619 2.44 0.00 42.21 4.57
196 197 2.831685 TTCCTCTCGCTAAAGCACAA 57.168 45.000 2.44 0.00 42.21 3.33
197 198 2.080286 TCCTCTCGCTAAAGCACAAC 57.920 50.000 2.44 0.00 42.21 3.32
198 199 1.079503 CCTCTCGCTAAAGCACAACC 58.920 55.000 2.44 0.00 42.21 3.77
199 200 0.716108 CTCTCGCTAAAGCACAACCG 59.284 55.000 2.44 0.00 42.21 4.44
200 201 0.032952 TCTCGCTAAAGCACAACCGT 59.967 50.000 2.44 0.00 42.21 4.83
201 202 0.163788 CTCGCTAAAGCACAACCGTG 59.836 55.000 2.44 0.00 46.56 4.94
209 210 4.268687 CACAACCGTGCCTCTCTC 57.731 61.111 0.00 0.00 36.06 3.20
210 211 1.734477 CACAACCGTGCCTCTCTCG 60.734 63.158 0.00 0.00 36.06 4.04
211 212 1.901948 ACAACCGTGCCTCTCTCGA 60.902 57.895 0.00 0.00 33.89 4.04
212 213 1.289066 CAACCGTGCCTCTCTCGAA 59.711 57.895 0.00 0.00 33.89 3.71
213 214 0.319555 CAACCGTGCCTCTCTCGAAA 60.320 55.000 0.00 0.00 33.89 3.46
214 215 0.038159 AACCGTGCCTCTCTCGAAAG 60.038 55.000 0.00 0.00 33.89 2.62
215 216 1.807573 CCGTGCCTCTCTCGAAAGC 60.808 63.158 0.00 0.00 33.89 3.51
216 217 1.080501 CGTGCCTCTCTCGAAAGCA 60.081 57.895 0.00 0.00 33.89 3.91
217 218 0.667487 CGTGCCTCTCTCGAAAGCAA 60.667 55.000 0.00 0.00 32.30 3.91
218 219 1.512926 GTGCCTCTCTCGAAAGCAAA 58.487 50.000 0.00 0.00 32.30 3.68
219 220 1.873591 GTGCCTCTCTCGAAAGCAAAA 59.126 47.619 0.00 0.00 32.30 2.44
220 221 1.873591 TGCCTCTCTCGAAAGCAAAAC 59.126 47.619 0.00 0.00 0.00 2.43
221 222 1.197949 GCCTCTCTCGAAAGCAAAACC 59.802 52.381 0.00 0.00 0.00 3.27
222 223 1.461127 CCTCTCTCGAAAGCAAAACCG 59.539 52.381 0.00 0.00 0.00 4.44
223 224 2.135933 CTCTCTCGAAAGCAAAACCGT 58.864 47.619 0.00 0.00 0.00 4.83
224 225 1.864711 TCTCTCGAAAGCAAAACCGTG 59.135 47.619 0.00 0.00 0.00 4.94
225 226 0.306533 TCTCGAAAGCAAAACCGTGC 59.693 50.000 0.00 0.00 45.28 5.34
226 227 0.660300 CTCGAAAGCAAAACCGTGCC 60.660 55.000 0.00 0.00 46.14 5.01
227 228 1.098712 TCGAAAGCAAAACCGTGCCT 61.099 50.000 0.00 0.00 46.14 4.75
228 229 0.660300 CGAAAGCAAAACCGTGCCTC 60.660 55.000 0.00 0.00 46.14 4.70
229 230 0.668535 GAAAGCAAAACCGTGCCTCT 59.331 50.000 0.00 0.00 46.14 3.69
230 231 0.668535 AAAGCAAAACCGTGCCTCTC 59.331 50.000 0.00 0.00 46.14 3.20
231 232 1.507141 AAGCAAAACCGTGCCTCTCG 61.507 55.000 0.00 0.00 46.14 4.04
232 233 2.556287 CAAAACCGTGCCTCTCGC 59.444 61.111 0.00 0.00 38.31 5.03
238 239 2.736995 CGTGCCTCTCGCGGAAAA 60.737 61.111 6.13 0.00 44.36 2.29
239 240 2.314647 CGTGCCTCTCGCGGAAAAA 61.315 57.895 6.13 0.00 44.36 1.94
279 280 5.726980 TTTTCCATTTCCAAGAGTCATGG 57.273 39.130 8.15 8.15 39.41 3.66
280 281 2.726821 TCCATTTCCAAGAGTCATGGC 58.273 47.619 9.62 0.00 37.88 4.40
281 282 1.753073 CCATTTCCAAGAGTCATGGCC 59.247 52.381 9.62 0.00 37.88 5.36
282 283 1.402968 CATTTCCAAGAGTCATGGCCG 59.597 52.381 9.62 0.00 37.88 6.13
283 284 0.400213 TTTCCAAGAGTCATGGCCGT 59.600 50.000 9.62 0.00 37.88 5.68
284 285 0.321564 TTCCAAGAGTCATGGCCGTG 60.322 55.000 19.62 19.62 37.88 4.94
285 286 1.191489 TCCAAGAGTCATGGCCGTGA 61.191 55.000 24.15 24.15 37.88 4.35
286 287 1.021390 CCAAGAGTCATGGCCGTGAC 61.021 60.000 39.85 39.85 46.90 3.67
290 291 4.504132 GTCATGGCCGTGACTCTC 57.496 61.111 39.44 21.22 43.96 3.20
291 292 1.517257 GTCATGGCCGTGACTCTCG 60.517 63.158 39.44 10.14 43.96 4.04
292 293 1.977009 TCATGGCCGTGACTCTCGT 60.977 57.895 24.15 0.00 0.00 4.18
293 294 1.807165 CATGGCCGTGACTCTCGTG 60.807 63.158 21.08 0.00 0.00 4.35
294 295 1.977009 ATGGCCGTGACTCTCGTGA 60.977 57.895 0.00 0.00 0.00 4.35
295 296 1.532604 ATGGCCGTGACTCTCGTGAA 61.533 55.000 0.00 0.00 0.00 3.18
296 297 1.006571 GGCCGTGACTCTCGTGAAA 60.007 57.895 0.00 0.00 0.00 2.69
297 298 1.009389 GGCCGTGACTCTCGTGAAAG 61.009 60.000 0.00 0.00 0.00 2.62
298 299 1.618640 GCCGTGACTCTCGTGAAAGC 61.619 60.000 0.24 0.00 0.00 3.51
299 300 0.318699 CCGTGACTCTCGTGAAAGCA 60.319 55.000 0.24 0.00 0.00 3.91
300 301 1.487482 CGTGACTCTCGTGAAAGCAA 58.513 50.000 0.00 0.00 0.00 3.91
301 302 1.858458 CGTGACTCTCGTGAAAGCAAA 59.142 47.619 0.00 0.00 0.00 3.68
302 303 2.284150 CGTGACTCTCGTGAAAGCAAAA 59.716 45.455 0.00 0.00 0.00 2.44
303 304 3.608456 GTGACTCTCGTGAAAGCAAAAC 58.392 45.455 0.00 0.00 0.00 2.43
304 305 2.612212 TGACTCTCGTGAAAGCAAAACC 59.388 45.455 0.00 0.00 0.00 3.27
305 306 1.597663 ACTCTCGTGAAAGCAAAACCG 59.402 47.619 0.00 0.00 0.00 4.44
306 307 1.597663 CTCTCGTGAAAGCAAAACCGT 59.402 47.619 0.00 0.00 0.00 4.83
307 308 1.329292 TCTCGTGAAAGCAAAACCGTG 59.671 47.619 0.00 0.00 0.00 4.94
308 309 0.248296 TCGTGAAAGCAAAACCGTGC 60.248 50.000 0.00 0.00 45.28 5.34
309 310 1.206115 CGTGAAAGCAAAACCGTGCC 61.206 55.000 0.00 0.00 46.14 5.01
310 311 0.102300 GTGAAAGCAAAACCGTGCCT 59.898 50.000 0.00 0.00 46.14 4.75
311 312 0.383949 TGAAAGCAAAACCGTGCCTC 59.616 50.000 0.00 0.00 46.14 4.70
312 313 0.668535 GAAAGCAAAACCGTGCCTCT 59.331 50.000 0.00 0.00 46.14 3.69
313 314 0.668535 AAAGCAAAACCGTGCCTCTC 59.331 50.000 0.00 0.00 46.14 3.20
314 315 1.507141 AAGCAAAACCGTGCCTCTCG 61.507 55.000 0.00 0.00 46.14 4.04
315 316 2.556287 CAAAACCGTGCCTCTCGC 59.444 61.111 0.00 0.00 38.31 5.03
332 333 4.914291 CGGAAGCAAAACCGTGAC 57.086 55.556 0.00 0.00 43.53 3.67
333 334 2.317230 CGGAAGCAAAACCGTGACT 58.683 52.632 0.00 0.00 43.53 3.41
334 335 0.234884 CGGAAGCAAAACCGTGACTC 59.765 55.000 0.00 0.00 43.53 3.36
335 336 1.594331 GGAAGCAAAACCGTGACTCT 58.406 50.000 0.00 0.00 0.00 3.24
336 337 1.264288 GGAAGCAAAACCGTGACTCTG 59.736 52.381 0.00 0.00 0.00 3.35
337 338 1.264288 GAAGCAAAACCGTGACTCTGG 59.736 52.381 0.00 0.00 0.00 3.86
338 339 1.166531 AGCAAAACCGTGACTCTGGC 61.167 55.000 0.00 0.00 0.00 4.85
339 340 1.444119 GCAAAACCGTGACTCTGGCA 61.444 55.000 0.00 0.00 0.00 4.92
340 341 1.021202 CAAAACCGTGACTCTGGCAA 58.979 50.000 0.00 0.00 0.00 4.52
341 342 1.403679 CAAAACCGTGACTCTGGCAAA 59.596 47.619 0.00 0.00 0.00 3.68
342 343 1.757682 AAACCGTGACTCTGGCAAAA 58.242 45.000 0.00 0.00 0.00 2.44
343 344 1.981256 AACCGTGACTCTGGCAAAAT 58.019 45.000 0.00 0.00 0.00 1.82
344 345 2.851263 ACCGTGACTCTGGCAAAATA 57.149 45.000 0.00 0.00 0.00 1.40
345 346 3.134574 ACCGTGACTCTGGCAAAATAA 57.865 42.857 0.00 0.00 0.00 1.40
346 347 3.482436 ACCGTGACTCTGGCAAAATAAA 58.518 40.909 0.00 0.00 0.00 1.40
347 348 3.886505 ACCGTGACTCTGGCAAAATAAAA 59.113 39.130 0.00 0.00 0.00 1.52
348 349 4.339814 ACCGTGACTCTGGCAAAATAAAAA 59.660 37.500 0.00 0.00 0.00 1.94
381 382 9.657121 TTTTTCACACACACAAAAATTCTTTTC 57.343 25.926 0.00 0.00 32.24 2.29
382 383 6.624710 TCACACACACAAAAATTCTTTTCG 57.375 33.333 0.00 0.00 32.24 3.46
383 384 6.153067 TCACACACACAAAAATTCTTTTCGT 58.847 32.000 0.00 0.00 32.24 3.85
384 385 7.306213 TCACACACACAAAAATTCTTTTCGTA 58.694 30.769 0.00 0.00 32.24 3.43
385 386 7.971168 TCACACACACAAAAATTCTTTTCGTAT 59.029 29.630 0.00 0.00 32.24 3.06
386 387 8.591312 CACACACACAAAAATTCTTTTCGTATT 58.409 29.630 0.00 0.00 32.24 1.89
387 388 8.803799 ACACACACAAAAATTCTTTTCGTATTC 58.196 29.630 0.00 0.00 32.24 1.75
388 389 9.019764 CACACACAAAAATTCTTTTCGTATTCT 57.980 29.630 0.00 0.00 32.24 2.40
389 390 9.581099 ACACACAAAAATTCTTTTCGTATTCTT 57.419 25.926 0.00 0.00 32.24 2.52
415 416 8.766000 TTTTGTTTCAAAAGTTAAGGAAGACC 57.234 30.769 3.93 0.00 0.00 3.85
416 417 6.126568 TGTTTCAAAAGTTAAGGAAGACCG 57.873 37.500 0.00 0.00 41.83 4.79
417 418 5.066764 TGTTTCAAAAGTTAAGGAAGACCGG 59.933 40.000 0.00 0.00 41.83 5.28
418 419 4.426736 TCAAAAGTTAAGGAAGACCGGT 57.573 40.909 6.92 6.92 41.83 5.28
419 420 4.131596 TCAAAAGTTAAGGAAGACCGGTG 58.868 43.478 14.63 0.00 41.83 4.94
420 421 4.131596 CAAAAGTTAAGGAAGACCGGTGA 58.868 43.478 14.63 0.00 41.83 4.02
421 422 4.426736 AAAGTTAAGGAAGACCGGTGAA 57.573 40.909 14.63 0.00 41.83 3.18
422 423 4.426736 AAGTTAAGGAAGACCGGTGAAA 57.573 40.909 14.63 0.00 41.83 2.69
423 424 4.426736 AGTTAAGGAAGACCGGTGAAAA 57.573 40.909 14.63 0.00 41.83 2.29
424 425 4.784177 AGTTAAGGAAGACCGGTGAAAAA 58.216 39.130 14.63 0.00 41.83 1.94
425 426 4.577693 AGTTAAGGAAGACCGGTGAAAAAC 59.422 41.667 14.63 7.21 41.83 2.43
426 427 1.977056 AGGAAGACCGGTGAAAAACC 58.023 50.000 14.63 6.78 46.60 3.27
464 465 7.760131 AACCTAGAAAAACGTTTAAAAAGCC 57.240 32.000 15.03 0.00 0.00 4.35
465 466 6.865411 ACCTAGAAAAACGTTTAAAAAGCCA 58.135 32.000 15.03 0.00 0.00 4.75
466 467 7.321908 ACCTAGAAAAACGTTTAAAAAGCCAA 58.678 30.769 15.03 0.00 0.00 4.52
467 468 7.818446 ACCTAGAAAAACGTTTAAAAAGCCAAA 59.182 29.630 15.03 0.00 0.00 3.28
468 469 8.657729 CCTAGAAAAACGTTTAAAAAGCCAAAA 58.342 29.630 15.03 0.00 0.00 2.44
470 471 8.716619 AGAAAAACGTTTAAAAAGCCAAAAAC 57.283 26.923 15.03 0.00 0.00 2.43
473 474 3.265259 CGTTTAAAAAGCCAAAAACGCG 58.735 40.909 3.53 3.53 44.94 6.01
474 475 3.241709 CGTTTAAAAAGCCAAAAACGCGT 60.242 39.130 5.58 5.58 44.94 6.01
475 476 4.027864 CGTTTAAAAAGCCAAAAACGCGTA 60.028 37.500 14.46 0.00 44.94 4.42
476 477 5.331681 CGTTTAAAAAGCCAAAAACGCGTAT 60.332 36.000 14.46 0.69 44.94 3.06
477 478 5.562705 TTAAAAAGCCAAAAACGCGTATG 57.437 34.783 14.46 12.50 0.00 2.39
478 479 3.357166 AAAAGCCAAAAACGCGTATGA 57.643 38.095 14.46 0.00 0.00 2.15
479 480 3.357166 AAAGCCAAAAACGCGTATGAA 57.643 38.095 14.46 0.00 0.00 2.57
480 481 3.357166 AAGCCAAAAACGCGTATGAAA 57.643 38.095 14.46 0.00 0.00 2.69
481 482 3.357166 AGCCAAAAACGCGTATGAAAA 57.643 38.095 14.46 0.00 0.00 2.29
482 483 3.707793 AGCCAAAAACGCGTATGAAAAA 58.292 36.364 14.46 0.00 0.00 1.94
505 506 3.537793 AACAAAATCCGAAGAGAACGC 57.462 42.857 0.00 0.00 0.00 4.84
506 507 1.804748 ACAAAATCCGAAGAGAACGCC 59.195 47.619 0.00 0.00 0.00 5.68
507 508 1.130561 CAAAATCCGAAGAGAACGCCC 59.869 52.381 0.00 0.00 0.00 6.13
508 509 0.323629 AAATCCGAAGAGAACGCCCA 59.676 50.000 0.00 0.00 0.00 5.36
509 510 0.108138 AATCCGAAGAGAACGCCCAG 60.108 55.000 0.00 0.00 0.00 4.45
510 511 0.970937 ATCCGAAGAGAACGCCCAGA 60.971 55.000 0.00 0.00 0.00 3.86
511 512 1.153745 CCGAAGAGAACGCCCAGAG 60.154 63.158 0.00 0.00 0.00 3.35
512 513 1.807573 CGAAGAGAACGCCCAGAGC 60.808 63.158 0.00 0.00 38.52 4.09
542 543 3.681835 GGGTGACCGAGAGCGTGT 61.682 66.667 0.00 0.00 43.64 4.49
543 544 2.126424 GGTGACCGAGAGCGTGTC 60.126 66.667 0.00 0.00 37.85 3.67
544 545 2.643272 GTGACCGAGAGCGTGTCA 59.357 61.111 0.00 0.00 41.77 3.58
545 546 1.007734 GTGACCGAGAGCGTGTCAA 60.008 57.895 0.00 0.00 43.80 3.18
546 547 1.004277 GTGACCGAGAGCGTGTCAAG 61.004 60.000 0.00 0.00 43.80 3.02
547 548 1.286260 GACCGAGAGCGTGTCAAGT 59.714 57.895 0.00 0.00 37.53 3.16
548 549 1.004277 GACCGAGAGCGTGTCAAGTG 61.004 60.000 0.00 0.00 37.53 3.16
549 550 1.734477 CCGAGAGCGTGTCAAGTGG 60.734 63.158 0.00 0.00 35.23 4.00
550 551 2.375766 CGAGAGCGTGTCAAGTGGC 61.376 63.158 0.00 0.00 0.00 5.01
551 552 2.356313 AGAGCGTGTCAAGTGGCG 60.356 61.111 0.00 0.00 0.00 5.69
552 553 2.661866 GAGCGTGTCAAGTGGCGT 60.662 61.111 0.00 0.00 0.00 5.68
553 554 2.203015 AGCGTGTCAAGTGGCGTT 60.203 55.556 0.00 0.00 0.00 4.84
554 555 2.052237 GCGTGTCAAGTGGCGTTG 60.052 61.111 0.00 0.00 0.00 4.10
555 556 2.530497 GCGTGTCAAGTGGCGTTGA 61.530 57.895 0.00 0.00 33.95 3.18
556 557 1.841663 GCGTGTCAAGTGGCGTTGAT 61.842 55.000 5.51 0.00 38.68 2.57
557 558 0.163788 CGTGTCAAGTGGCGTTGATC 59.836 55.000 5.51 0.00 38.68 2.92
558 559 1.512926 GTGTCAAGTGGCGTTGATCT 58.487 50.000 5.51 0.00 38.68 2.75
559 560 1.461127 GTGTCAAGTGGCGTTGATCTC 59.539 52.381 5.51 0.00 38.68 2.75
560 561 1.344438 TGTCAAGTGGCGTTGATCTCT 59.656 47.619 5.51 0.00 38.68 3.10
561 562 1.728971 GTCAAGTGGCGTTGATCTCTG 59.271 52.381 5.51 0.00 38.68 3.35
562 563 0.445436 CAAGTGGCGTTGATCTCTGC 59.555 55.000 0.00 0.00 0.00 4.26
563 564 0.035317 AAGTGGCGTTGATCTCTGCA 59.965 50.000 0.00 0.00 0.00 4.41
564 565 0.035317 AGTGGCGTTGATCTCTGCAA 59.965 50.000 0.00 0.00 0.00 4.08
565 566 0.445436 GTGGCGTTGATCTCTGCAAG 59.555 55.000 0.00 0.00 0.00 4.01
566 567 1.300971 TGGCGTTGATCTCTGCAAGC 61.301 55.000 0.00 0.00 0.00 4.01
567 568 1.427020 GCGTTGATCTCTGCAAGCC 59.573 57.895 0.00 0.00 0.00 4.35
568 569 1.023513 GCGTTGATCTCTGCAAGCCT 61.024 55.000 0.00 0.00 0.00 4.58
569 570 1.446907 CGTTGATCTCTGCAAGCCTT 58.553 50.000 0.00 0.00 0.00 4.35
570 571 1.396301 CGTTGATCTCTGCAAGCCTTC 59.604 52.381 0.00 0.00 0.00 3.46
571 572 1.742268 GTTGATCTCTGCAAGCCTTCC 59.258 52.381 0.00 0.00 0.00 3.46
572 573 0.986527 TGATCTCTGCAAGCCTTCCA 59.013 50.000 0.00 0.00 0.00 3.53
573 574 1.352017 TGATCTCTGCAAGCCTTCCAA 59.648 47.619 0.00 0.00 0.00 3.53
574 575 2.224843 TGATCTCTGCAAGCCTTCCAAA 60.225 45.455 0.00 0.00 0.00 3.28
575 576 1.901591 TCTCTGCAAGCCTTCCAAAG 58.098 50.000 0.00 0.00 0.00 2.77
585 586 3.239861 CTTCCAAAGGAGCGCTCTT 57.760 52.632 34.46 26.82 31.21 2.85
586 587 1.528129 CTTCCAAAGGAGCGCTCTTT 58.472 50.000 34.46 30.85 35.09 2.52
587 588 2.699954 CTTCCAAAGGAGCGCTCTTTA 58.300 47.619 31.70 16.21 33.62 1.85
588 589 2.851263 TCCAAAGGAGCGCTCTTTAA 57.149 45.000 31.70 18.73 33.62 1.52
589 590 2.423577 TCCAAAGGAGCGCTCTTTAAC 58.576 47.619 31.70 17.71 33.62 2.01
590 591 2.038557 TCCAAAGGAGCGCTCTTTAACT 59.961 45.455 31.70 19.65 33.62 2.24
591 592 2.814336 CCAAAGGAGCGCTCTTTAACTT 59.186 45.455 31.70 23.84 33.62 2.66
592 593 3.253432 CCAAAGGAGCGCTCTTTAACTTT 59.747 43.478 31.70 27.41 33.62 2.66
593 594 4.261614 CCAAAGGAGCGCTCTTTAACTTTT 60.262 41.667 31.70 14.78 33.62 2.27
594 595 5.281727 CAAAGGAGCGCTCTTTAACTTTTT 58.718 37.500 31.70 14.07 33.62 1.94
612 613 0.457851 TTTTTGTTGAGGGGTGCACG 59.542 50.000 11.45 0.00 0.00 5.34
613 614 0.681564 TTTTGTTGAGGGGTGCACGT 60.682 50.000 11.45 0.00 0.00 4.49
614 615 0.681564 TTTGTTGAGGGGTGCACGTT 60.682 50.000 11.45 0.00 0.00 3.99
615 616 0.180642 TTGTTGAGGGGTGCACGTTA 59.819 50.000 11.45 0.00 0.00 3.18
616 617 0.180642 TGTTGAGGGGTGCACGTTAA 59.819 50.000 11.45 0.00 0.00 2.01
617 618 0.589708 GTTGAGGGGTGCACGTTAAC 59.410 55.000 11.45 7.48 0.00 2.01
618 619 0.470766 TTGAGGGGTGCACGTTAACT 59.529 50.000 11.45 3.93 0.00 2.24
619 620 1.340088 TGAGGGGTGCACGTTAACTA 58.660 50.000 11.45 0.00 0.00 2.24
620 621 1.274167 TGAGGGGTGCACGTTAACTAG 59.726 52.381 11.45 0.00 0.00 2.57
621 622 1.274447 GAGGGGTGCACGTTAACTAGT 59.726 52.381 11.45 0.00 0.00 2.57
622 623 1.695788 AGGGGTGCACGTTAACTAGTT 59.304 47.619 13.68 13.68 0.00 2.24
623 624 1.802365 GGGGTGCACGTTAACTAGTTG 59.198 52.381 18.56 4.14 0.00 3.16
624 625 1.196127 GGGTGCACGTTAACTAGTTGC 59.804 52.381 18.56 13.48 0.00 4.17
625 626 2.140717 GGTGCACGTTAACTAGTTGCT 58.859 47.619 18.56 0.00 0.00 3.91
626 627 2.157085 GGTGCACGTTAACTAGTTGCTC 59.843 50.000 18.56 13.13 0.00 4.26
627 628 3.057734 GTGCACGTTAACTAGTTGCTCT 58.942 45.455 18.56 0.00 0.00 4.09
628 629 3.121445 GTGCACGTTAACTAGTTGCTCTC 59.879 47.826 18.56 5.11 0.00 3.20
629 630 3.243602 TGCACGTTAACTAGTTGCTCTCA 60.244 43.478 18.56 6.33 0.00 3.27
630 631 3.121445 GCACGTTAACTAGTTGCTCTCAC 59.879 47.826 18.56 4.51 0.00 3.51
631 632 3.673809 CACGTTAACTAGTTGCTCTCACC 59.326 47.826 18.56 0.00 0.00 4.02
632 633 3.319972 ACGTTAACTAGTTGCTCTCACCA 59.680 43.478 18.56 0.00 0.00 4.17
633 634 4.202182 ACGTTAACTAGTTGCTCTCACCAA 60.202 41.667 18.56 0.00 0.00 3.67
634 635 4.386049 CGTTAACTAGTTGCTCTCACCAAG 59.614 45.833 18.56 0.00 0.00 3.61
635 636 2.464157 ACTAGTTGCTCTCACCAAGC 57.536 50.000 0.00 0.00 40.26 4.01
636 637 1.974236 ACTAGTTGCTCTCACCAAGCT 59.026 47.619 0.00 0.00 40.50 3.74
637 638 2.028567 ACTAGTTGCTCTCACCAAGCTC 60.029 50.000 0.00 0.00 40.50 4.09
638 639 0.761187 AGTTGCTCTCACCAAGCTCA 59.239 50.000 0.00 0.00 40.50 4.26
639 640 1.350351 AGTTGCTCTCACCAAGCTCAT 59.650 47.619 0.00 0.00 40.50 2.90
640 641 2.568956 AGTTGCTCTCACCAAGCTCATA 59.431 45.455 0.00 0.00 40.50 2.15
641 642 2.675348 GTTGCTCTCACCAAGCTCATAC 59.325 50.000 0.00 0.00 40.50 2.39
642 643 1.208052 TGCTCTCACCAAGCTCATACC 59.792 52.381 0.00 0.00 40.50 2.73
643 644 1.804372 GCTCTCACCAAGCTCATACCG 60.804 57.143 0.00 0.00 36.80 4.02
644 645 0.175760 TCTCACCAAGCTCATACCGC 59.824 55.000 0.00 0.00 0.00 5.68
645 646 0.811616 CTCACCAAGCTCATACCGCC 60.812 60.000 0.00 0.00 0.00 6.13
646 647 2.173669 CACCAAGCTCATACCGCCG 61.174 63.158 0.00 0.00 0.00 6.46
647 648 3.272334 CCAAGCTCATACCGCCGC 61.272 66.667 0.00 0.00 0.00 6.53
648 649 2.202932 CAAGCTCATACCGCCGCT 60.203 61.111 0.00 0.00 0.00 5.52
659 660 3.059386 CGCCGCTTAAAAGGGCCA 61.059 61.111 6.18 0.00 38.41 5.36
661 662 1.668867 GCCGCTTAAAAGGGCCAAA 59.331 52.632 6.18 0.00 36.78 3.28
668 669 4.703897 GCTTAAAAGGGCCAAACTTCTTT 58.296 39.130 6.18 0.06 0.00 2.52
669 670 4.750098 GCTTAAAAGGGCCAAACTTCTTTC 59.250 41.667 6.18 0.00 0.00 2.62
742 744 4.129380 AGCTTGCCCTTTGCTTTTAAAAG 58.871 39.130 21.32 21.32 42.00 2.27
749 751 5.227569 CCTTTGCTTTTAAAAGGGTGGAT 57.772 39.130 25.40 0.00 46.67 3.41
806 808 4.149396 CGGTGTTTCTACAAACCGACTTAG 59.851 45.833 7.28 0.00 43.09 2.18
861 871 4.019983 CTGTAGAGTCCAGCCCGT 57.980 61.111 0.00 0.00 0.00 5.28
873 883 4.017775 AGTCCAGCCCGTAGTCCATATATA 60.018 45.833 0.00 0.00 0.00 0.86
1041 1078 1.529713 GGGGGAGCTAGACGAGGAG 60.530 68.421 0.00 0.00 0.00 3.69
1354 4615 2.040545 TCGTCCATCCTCTCTCTATCCC 59.959 54.545 0.00 0.00 0.00 3.85
1355 4616 2.815158 GTCCATCCTCTCTCTATCCCC 58.185 57.143 0.00 0.00 0.00 4.81
1356 4617 2.110899 GTCCATCCTCTCTCTATCCCCA 59.889 54.545 0.00 0.00 0.00 4.96
1457 4998 2.484062 GCTGCTGTGCTGGTTGTGT 61.484 57.895 0.00 0.00 0.00 3.72
1458 4999 1.165907 GCTGCTGTGCTGGTTGTGTA 61.166 55.000 0.00 0.00 0.00 2.90
1459 5000 1.308047 CTGCTGTGCTGGTTGTGTAA 58.692 50.000 0.00 0.00 0.00 2.41
1460 5001 1.265095 CTGCTGTGCTGGTTGTGTAAG 59.735 52.381 0.00 0.00 0.00 2.34
1461 5002 1.134250 TGCTGTGCTGGTTGTGTAAGA 60.134 47.619 0.00 0.00 0.00 2.10
1511 5573 6.017933 CACATCTGCTACGAAAATTGAGTTC 58.982 40.000 0.00 0.00 0.00 3.01
1608 5677 4.638304 TGTTCTGTTTGAGTTAGGTAGGC 58.362 43.478 0.00 0.00 0.00 3.93
1754 6540 1.321474 CTGATGGGCGCCATGTTAAT 58.679 50.000 30.85 11.15 45.26 1.40
1756 6542 1.408340 TGATGGGCGCCATGTTAATTG 59.592 47.619 30.85 0.00 45.26 2.32
1759 6545 2.447443 TGGGCGCCATGTTAATTGTAA 58.553 42.857 30.85 0.00 0.00 2.41
1760 6546 2.164624 TGGGCGCCATGTTAATTGTAAC 59.835 45.455 30.85 5.62 40.15 2.50
1763 6549 3.857093 GGCGCCATGTTAATTGTAACTTG 59.143 43.478 24.80 5.83 41.61 3.16
1765 6551 4.557301 GCGCCATGTTAATTGTAACTTGTC 59.443 41.667 0.00 0.04 40.92 3.18
1766 6552 5.619086 GCGCCATGTTAATTGTAACTTGTCT 60.619 40.000 0.00 0.00 40.92 3.41
2225 7596 1.104630 CTCCTACTTCTGACGGACCC 58.895 60.000 0.00 0.00 0.00 4.46
2243 7614 1.442526 CCGCAGCACTGAATGATCCC 61.443 60.000 0.81 0.00 0.00 3.85
2507 7878 2.371510 GGAGGATGCTGAGAAGGCTATT 59.628 50.000 0.00 0.00 0.00 1.73
2586 7957 4.028825 ACCTCGGCCTAGTAATTAGTTGT 58.971 43.478 0.00 0.00 0.00 3.32
2600 7971 5.767816 ATTAGTTGTTGCCTTCGTTTCTT 57.232 34.783 0.00 0.00 0.00 2.52
2608 7979 6.205784 TGTTGCCTTCGTTTCTTAAATCAAG 58.794 36.000 0.00 0.00 35.38 3.02
2771 8142 1.139853 AGGATGGGATGAGAGTTTCGC 59.860 52.381 0.00 0.00 0.00 4.70
2784 8155 5.685511 TGAGAGTTTCGCACTTAAATTTTGC 59.314 36.000 0.00 0.00 35.01 3.68
2786 8157 6.039616 AGAGTTTCGCACTTAAATTTTGCAA 58.960 32.000 12.50 0.00 35.01 4.08
2871 8275 9.573133 TTTTCTTCTCATCAAAAAGTGAAAGTC 57.427 29.630 0.00 0.00 40.50 3.01
2889 8293 4.056125 GCCAAAGCACTTCCCGGC 62.056 66.667 0.00 3.55 39.53 6.13
2920 8324 4.106341 TCCAATATCTTCCAGGAAATCCCC 59.894 45.833 2.72 0.00 36.42 4.81
2950 8354 6.667414 ACATCTCCAAATTCTGAGAGTAGAGT 59.333 38.462 11.26 4.33 40.71 3.24
2966 8370 1.899814 AGAGTGTTCATCCAGCGGTTA 59.100 47.619 0.00 0.00 0.00 2.85
3071 8492 3.055094 TCAAGTTCCTGTAGGGCATTCTC 60.055 47.826 0.00 0.00 35.41 2.87
3072 8493 2.551270 AGTTCCTGTAGGGCATTCTCA 58.449 47.619 0.00 0.00 35.41 3.27
3074 8495 3.054802 AGTTCCTGTAGGGCATTCTCAAG 60.055 47.826 0.00 0.00 35.41 3.02
3075 8496 2.551270 TCCTGTAGGGCATTCTCAAGT 58.449 47.619 0.00 0.00 35.41 3.16
3106 8527 6.148811 CCTTTAAAGAGGAGCAAAATACACGA 59.851 38.462 16.98 0.00 39.25 4.35
3121 8542 1.542030 ACACGAGCAAGTGGAGTAGAG 59.458 52.381 14.59 0.00 45.80 2.43
3122 8543 0.528470 ACGAGCAAGTGGAGTAGAGC 59.472 55.000 0.00 0.00 0.00 4.09
3123 8544 0.179124 CGAGCAAGTGGAGTAGAGCC 60.179 60.000 0.00 0.00 0.00 4.70
3131 8575 5.396436 GCAAGTGGAGTAGAGCCCTTAAATA 60.396 44.000 0.00 0.00 0.00 1.40
3184 8628 1.341383 ACCAGAAGATTGGGTGATGGC 60.341 52.381 0.00 0.00 42.76 4.40
3207 8653 1.202568 CGCAGCAAGAGTGTCAACG 59.797 57.895 0.00 0.00 0.00 4.10
3269 8715 6.347160 GCAAGTTTCTGAATTTTCTCCATTGC 60.347 38.462 0.00 0.00 0.00 3.56
3319 8765 6.490566 AAATGCTCAAATGAGAAAAATGCC 57.509 33.333 14.43 0.00 44.74 4.40
3322 8768 3.681417 GCTCAAATGAGAAAAATGCCCAC 59.319 43.478 14.43 0.00 44.74 4.61
3336 8782 1.064017 TGCCCACCATTAGTTCCATCC 60.064 52.381 0.00 0.00 0.00 3.51
3420 8878 3.696051 TGGCTGCTTCAGTGATTTTATCC 59.304 43.478 0.00 0.00 33.43 2.59
3423 8881 3.278574 TGCTTCAGTGATTTTATCCCCG 58.721 45.455 0.00 0.00 0.00 5.73
3450 8908 7.535258 CGAGGTGAAGAAAGTTTGTTGATTATG 59.465 37.037 2.21 0.00 0.00 1.90
3476 8934 3.937814 TGATGATGTCAACACCAGTACC 58.062 45.455 0.00 0.00 32.78 3.34
3485 8943 2.904434 CAACACCAGTACCTCTAAGGGT 59.096 50.000 0.00 0.00 40.58 4.34
3487 8945 2.537143 CACCAGTACCTCTAAGGGTGT 58.463 52.381 0.00 0.00 40.58 4.16
3488 8946 2.233922 CACCAGTACCTCTAAGGGTGTG 59.766 54.545 0.00 0.00 40.58 3.82
3489 8947 2.158204 ACCAGTACCTCTAAGGGTGTGT 60.158 50.000 0.00 0.00 40.58 3.72
3490 8948 2.904434 CCAGTACCTCTAAGGGTGTGTT 59.096 50.000 0.00 0.00 40.58 3.32
3491 8949 3.326880 CCAGTACCTCTAAGGGTGTGTTT 59.673 47.826 0.00 0.00 40.58 2.83
3492 8950 4.315803 CAGTACCTCTAAGGGTGTGTTTG 58.684 47.826 0.00 0.00 40.58 2.93
3493 8951 2.951229 ACCTCTAAGGGTGTGTTTGG 57.049 50.000 0.00 0.00 40.58 3.28
3494 8952 2.132686 ACCTCTAAGGGTGTGTTTGGT 58.867 47.619 0.00 0.00 40.58 3.67
3495 8953 2.512476 ACCTCTAAGGGTGTGTTTGGTT 59.488 45.455 0.00 0.00 40.58 3.67
3496 8954 2.884639 CCTCTAAGGGTGTGTTTGGTTG 59.115 50.000 0.00 0.00 0.00 3.77
3497 8955 3.434453 CCTCTAAGGGTGTGTTTGGTTGA 60.434 47.826 0.00 0.00 0.00 3.18
3498 8956 4.204012 CTCTAAGGGTGTGTTTGGTTGAA 58.796 43.478 0.00 0.00 0.00 2.69
3499 8957 4.204012 TCTAAGGGTGTGTTTGGTTGAAG 58.796 43.478 0.00 0.00 0.00 3.02
3500 8958 2.818751 AGGGTGTGTTTGGTTGAAGA 57.181 45.000 0.00 0.00 0.00 2.87
3501 8959 3.094484 AGGGTGTGTTTGGTTGAAGAA 57.906 42.857 0.00 0.00 0.00 2.52
3502 8960 2.758423 AGGGTGTGTTTGGTTGAAGAAC 59.242 45.455 0.00 0.00 0.00 3.01
3516 8974 6.385649 GTTGAAGAACCAACTGTTATGGAA 57.614 37.500 5.55 0.00 42.20 3.53
3517 8975 6.981722 GTTGAAGAACCAACTGTTATGGAAT 58.018 36.000 5.55 0.00 42.20 3.01
3518 8976 6.573664 TGAAGAACCAACTGTTATGGAATG 57.426 37.500 5.55 0.00 40.56 2.67
3519 8977 5.476599 TGAAGAACCAACTGTTATGGAATGG 59.523 40.000 5.55 0.00 40.56 3.16
3520 8978 5.255397 AGAACCAACTGTTATGGAATGGA 57.745 39.130 5.55 0.00 40.56 3.41
3521 8979 5.640147 AGAACCAACTGTTATGGAATGGAA 58.360 37.500 5.55 0.00 40.56 3.53
3522 8980 6.256053 AGAACCAACTGTTATGGAATGGAAT 58.744 36.000 5.55 0.00 40.56 3.01
3523 8981 5.920193 ACCAACTGTTATGGAATGGAATG 57.080 39.130 5.55 0.00 40.56 2.67
3524 8982 4.711355 ACCAACTGTTATGGAATGGAATGG 59.289 41.667 5.55 0.00 40.56 3.16
3525 8983 4.711355 CCAACTGTTATGGAATGGAATGGT 59.289 41.667 0.00 0.00 40.56 3.55
3526 8984 5.187576 CCAACTGTTATGGAATGGAATGGTT 59.812 40.000 0.00 0.00 40.56 3.67
3527 8985 6.332630 CAACTGTTATGGAATGGAATGGTTC 58.667 40.000 0.00 0.00 0.00 3.62
3528 8986 9.458546 CCAACTGTTATGGAATGGAATGGTTCC 62.459 44.444 1.77 1.77 44.37 3.62
3544 9002 1.917872 TTCCATTCCAAAGGAACGGG 58.082 50.000 10.63 10.57 44.25 5.28
3545 9003 0.774908 TCCATTCCAAAGGAACGGGT 59.225 50.000 10.63 0.00 44.25 5.28
3546 9004 1.173913 CCATTCCAAAGGAACGGGTC 58.826 55.000 3.04 0.00 45.07 4.46
3547 9005 1.546773 CCATTCCAAAGGAACGGGTCA 60.547 52.381 3.04 0.00 45.07 4.02
3548 9006 1.812571 CATTCCAAAGGAACGGGTCAG 59.187 52.381 0.00 0.00 45.07 3.51
3549 9007 0.841289 TTCCAAAGGAACGGGTCAGT 59.159 50.000 0.00 0.00 36.71 3.41
3550 9008 0.841289 TCCAAAGGAACGGGTCAGTT 59.159 50.000 0.00 0.00 36.99 3.16
3551 9009 4.060139 ATTCCAAAGGAACGGGTCAGTTC 61.060 47.826 0.00 5.62 45.07 3.01
3558 9016 3.057337 CGGGTCAGTTCCGTTCCT 58.943 61.111 0.00 0.00 42.33 3.36
3559 9017 1.374252 CGGGTCAGTTCCGTTCCTG 60.374 63.158 0.00 0.00 42.33 3.86
3560 9018 1.752833 GGGTCAGTTCCGTTCCTGT 59.247 57.895 0.00 0.00 0.00 4.00
3561 9019 0.602905 GGGTCAGTTCCGTTCCTGTG 60.603 60.000 0.00 0.00 0.00 3.66
3562 9020 0.106149 GGTCAGTTCCGTTCCTGTGT 59.894 55.000 0.00 0.00 0.00 3.72
3563 9021 1.474498 GGTCAGTTCCGTTCCTGTGTT 60.474 52.381 0.00 0.00 0.00 3.32
3564 9022 2.285977 GTCAGTTCCGTTCCTGTGTTT 58.714 47.619 0.00 0.00 0.00 2.83
3565 9023 2.031683 GTCAGTTCCGTTCCTGTGTTTG 59.968 50.000 0.00 0.00 0.00 2.93
3566 9024 1.333619 CAGTTCCGTTCCTGTGTTTGG 59.666 52.381 0.00 0.00 0.00 3.28
3567 9025 1.064979 AGTTCCGTTCCTGTGTTTGGT 60.065 47.619 0.00 0.00 0.00 3.67
3568 9026 2.171027 AGTTCCGTTCCTGTGTTTGGTA 59.829 45.455 0.00 0.00 0.00 3.25
3569 9027 3.143728 GTTCCGTTCCTGTGTTTGGTAT 58.856 45.455 0.00 0.00 0.00 2.73
3570 9028 3.048337 TCCGTTCCTGTGTTTGGTATC 57.952 47.619 0.00 0.00 0.00 2.24
3571 9029 2.369203 TCCGTTCCTGTGTTTGGTATCA 59.631 45.455 0.00 0.00 0.00 2.15
3572 9030 2.742053 CCGTTCCTGTGTTTGGTATCAG 59.258 50.000 0.00 0.00 0.00 2.90
3573 9031 2.159627 CGTTCCTGTGTTTGGTATCAGC 59.840 50.000 0.00 0.00 0.00 4.26
3574 9032 3.146066 GTTCCTGTGTTTGGTATCAGCA 58.854 45.455 0.00 0.00 0.00 4.41
3575 9033 3.500448 TCCTGTGTTTGGTATCAGCAA 57.500 42.857 0.00 0.00 33.27 3.91
3576 9034 3.826524 TCCTGTGTTTGGTATCAGCAAA 58.173 40.909 0.00 0.00 42.49 3.68
3577 9035 4.211125 TCCTGTGTTTGGTATCAGCAAAA 58.789 39.130 5.20 0.00 45.60 2.44
3578 9036 4.646945 TCCTGTGTTTGGTATCAGCAAAAA 59.353 37.500 5.20 0.00 45.60 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.925090 CGGCCCCAGATCCGGTAC 61.925 72.222 0.00 0.00 41.82 3.34
33 34 2.764128 GATCTCCGCCACCCTGGA 60.764 66.667 0.00 0.00 40.96 3.86
34 35 3.866582 GGATCTCCGCCACCCTGG 61.867 72.222 0.00 0.00 41.55 4.45
44 45 1.958205 CATCGCTTGCCGGATCTCC 60.958 63.158 5.05 0.00 37.59 3.71
45 46 1.227380 ACATCGCTTGCCGGATCTC 60.227 57.895 5.05 0.00 37.59 2.75
46 47 1.522355 CACATCGCTTGCCGGATCT 60.522 57.895 5.05 0.00 37.59 2.75
47 48 2.537560 CCACATCGCTTGCCGGATC 61.538 63.158 5.05 0.00 37.59 3.36
48 49 2.514592 CCACATCGCTTGCCGGAT 60.515 61.111 5.05 0.00 37.59 4.18
53 54 4.166011 GACCGCCACATCGCTTGC 62.166 66.667 0.00 0.00 0.00 4.01
54 55 2.741985 TGACCGCCACATCGCTTG 60.742 61.111 0.00 0.00 0.00 4.01
55 56 2.742372 GTGACCGCCACATCGCTT 60.742 61.111 1.94 0.00 45.03 4.68
58 59 2.880879 CTCGTGACCGCCACATCG 60.881 66.667 6.91 0.00 45.98 3.84
59 60 2.509336 CCTCGTGACCGCCACATC 60.509 66.667 6.91 0.00 45.98 3.06
60 61 3.311110 ACCTCGTGACCGCCACAT 61.311 61.111 6.91 0.00 45.98 3.21
61 62 4.293648 CACCTCGTGACCGCCACA 62.294 66.667 6.91 0.00 45.98 4.17
62 63 4.295119 ACACCTCGTGACCGCCAC 62.295 66.667 0.00 0.00 42.30 5.01
72 73 4.680237 TTGAGCCGCCACACCTCG 62.680 66.667 0.00 0.00 0.00 4.63
73 74 1.648467 GATTTGAGCCGCCACACCTC 61.648 60.000 0.00 0.00 0.00 3.85
74 75 1.675641 GATTTGAGCCGCCACACCT 60.676 57.895 0.00 0.00 0.00 4.00
75 76 1.648467 GAGATTTGAGCCGCCACACC 61.648 60.000 0.00 0.00 0.00 4.16
76 77 0.955428 TGAGATTTGAGCCGCCACAC 60.955 55.000 0.00 0.00 0.00 3.82
77 78 0.035152 ATGAGATTTGAGCCGCCACA 60.035 50.000 0.00 0.00 0.00 4.17
78 79 0.659957 GATGAGATTTGAGCCGCCAC 59.340 55.000 0.00 0.00 0.00 5.01
79 80 0.543277 AGATGAGATTTGAGCCGCCA 59.457 50.000 0.00 0.00 0.00 5.69
80 81 0.942962 CAGATGAGATTTGAGCCGCC 59.057 55.000 0.00 0.00 0.00 6.13
81 82 0.942962 CCAGATGAGATTTGAGCCGC 59.057 55.000 0.00 0.00 0.00 6.53
82 83 2.481854 CTCCAGATGAGATTTGAGCCG 58.518 52.381 0.00 0.00 44.42 5.52
83 84 2.158784 AGCTCCAGATGAGATTTGAGCC 60.159 50.000 5.75 0.00 44.75 4.70
84 85 3.196939 AGCTCCAGATGAGATTTGAGC 57.803 47.619 0.00 0.00 44.42 4.26
90 91 3.113824 ACCAGAAAGCTCCAGATGAGAT 58.886 45.455 0.00 0.00 44.42 2.75
91 92 2.235650 CACCAGAAAGCTCCAGATGAGA 59.764 50.000 0.00 0.00 44.42 3.27
92 93 2.027377 ACACCAGAAAGCTCCAGATGAG 60.027 50.000 0.00 0.00 44.47 2.90
93 94 1.980765 ACACCAGAAAGCTCCAGATGA 59.019 47.619 0.00 0.00 0.00 2.92
94 95 2.082231 CACACCAGAAAGCTCCAGATG 58.918 52.381 0.00 0.00 0.00 2.90
95 96 1.004044 CCACACCAGAAAGCTCCAGAT 59.996 52.381 0.00 0.00 0.00 2.90
96 97 0.397941 CCACACCAGAAAGCTCCAGA 59.602 55.000 0.00 0.00 0.00 3.86
97 98 0.109342 ACCACACCAGAAAGCTCCAG 59.891 55.000 0.00 0.00 0.00 3.86
98 99 0.550914 AACCACACCAGAAAGCTCCA 59.449 50.000 0.00 0.00 0.00 3.86
99 100 0.954452 CAACCACACCAGAAAGCTCC 59.046 55.000 0.00 0.00 0.00 4.70
100 101 1.334869 CACAACCACACCAGAAAGCTC 59.665 52.381 0.00 0.00 0.00 4.09
101 102 1.340991 ACACAACCACACCAGAAAGCT 60.341 47.619 0.00 0.00 0.00 3.74
102 103 1.102978 ACACAACCACACCAGAAAGC 58.897 50.000 0.00 0.00 0.00 3.51
103 104 1.405105 CCACACAACCACACCAGAAAG 59.595 52.381 0.00 0.00 0.00 2.62
104 105 1.468985 CCACACAACCACACCAGAAA 58.531 50.000 0.00 0.00 0.00 2.52
105 106 0.395036 CCCACACAACCACACCAGAA 60.395 55.000 0.00 0.00 0.00 3.02
106 107 1.225983 CCCACACAACCACACCAGA 59.774 57.895 0.00 0.00 0.00 3.86
107 108 2.489275 GCCCACACAACCACACCAG 61.489 63.158 0.00 0.00 0.00 4.00
108 109 2.441164 GCCCACACAACCACACCA 60.441 61.111 0.00 0.00 0.00 4.17
109 110 1.734388 GAAGCCCACACAACCACACC 61.734 60.000 0.00 0.00 0.00 4.16
110 111 1.034838 TGAAGCCCACACAACCACAC 61.035 55.000 0.00 0.00 0.00 3.82
111 112 1.034838 GTGAAGCCCACACAACCACA 61.035 55.000 2.33 0.00 45.03 4.17
112 113 1.733526 GTGAAGCCCACACAACCAC 59.266 57.895 2.33 0.00 45.03 4.16
113 114 1.821759 CGTGAAGCCCACACAACCA 60.822 57.895 7.49 0.00 45.98 3.67
114 115 2.551912 CCGTGAAGCCCACACAACC 61.552 63.158 7.49 0.00 45.98 3.77
115 116 1.507141 CTCCGTGAAGCCCACACAAC 61.507 60.000 7.49 0.00 45.98 3.32
116 117 1.227823 CTCCGTGAAGCCCACACAA 60.228 57.895 7.49 0.00 45.98 3.33
117 118 2.425592 CTCCGTGAAGCCCACACA 59.574 61.111 7.49 0.00 45.98 3.72
118 119 2.358737 CCTCCGTGAAGCCCACAC 60.359 66.667 7.49 0.00 45.98 3.82
119 120 3.636231 CCCTCCGTGAAGCCCACA 61.636 66.667 7.49 0.00 45.98 4.17
120 121 4.410400 CCCCTCCGTGAAGCCCAC 62.410 72.222 0.00 0.00 42.30 4.61
121 122 4.974438 ACCCCTCCGTGAAGCCCA 62.974 66.667 0.00 0.00 0.00 5.36
122 123 3.623703 GAACCCCTCCGTGAAGCCC 62.624 68.421 0.00 0.00 0.00 5.19
123 124 2.046217 GAACCCCTCCGTGAAGCC 60.046 66.667 0.00 0.00 0.00 4.35
124 125 2.046217 GGAACCCCTCCGTGAAGC 60.046 66.667 0.00 0.00 33.37 3.86
131 132 2.606826 AGGACACGGAACCCCTCC 60.607 66.667 0.00 0.00 41.40 4.30
132 133 2.979649 GAGGACACGGAACCCCTC 59.020 66.667 0.00 0.00 38.47 4.30
133 134 2.995574 CGAGGACACGGAACCCCT 60.996 66.667 0.00 0.00 0.00 4.79
167 168 1.227497 CGAGAGGAATGGCCAGAGC 60.227 63.158 13.05 2.19 40.02 4.09
168 169 1.227497 GCGAGAGGAATGGCCAGAG 60.227 63.158 13.05 0.00 40.02 3.35
169 170 0.397114 TAGCGAGAGGAATGGCCAGA 60.397 55.000 13.05 0.00 40.02 3.86
170 171 0.465705 TTAGCGAGAGGAATGGCCAG 59.534 55.000 13.05 0.00 40.02 4.85
171 172 0.908910 TTTAGCGAGAGGAATGGCCA 59.091 50.000 8.56 8.56 40.02 5.36
172 173 1.587547 CTTTAGCGAGAGGAATGGCC 58.412 55.000 0.00 0.00 0.00 5.36
173 174 0.940833 GCTTTAGCGAGAGGAATGGC 59.059 55.000 0.00 0.00 0.00 4.40
174 175 1.936547 GTGCTTTAGCGAGAGGAATGG 59.063 52.381 0.00 0.00 45.83 3.16
175 176 2.621338 TGTGCTTTAGCGAGAGGAATG 58.379 47.619 0.00 0.00 45.83 2.67
176 177 3.003480 GTTGTGCTTTAGCGAGAGGAAT 58.997 45.455 0.00 0.00 45.83 3.01
177 178 2.413837 GTTGTGCTTTAGCGAGAGGAA 58.586 47.619 0.00 0.00 45.83 3.36
178 179 1.337823 GGTTGTGCTTTAGCGAGAGGA 60.338 52.381 0.00 0.00 45.83 3.71
179 180 1.079503 GGTTGTGCTTTAGCGAGAGG 58.920 55.000 0.00 0.00 45.83 3.69
180 181 0.716108 CGGTTGTGCTTTAGCGAGAG 59.284 55.000 0.00 0.00 45.83 3.20
181 182 0.032952 ACGGTTGTGCTTTAGCGAGA 59.967 50.000 10.18 0.00 45.83 4.04
182 183 0.163788 CACGGTTGTGCTTTAGCGAG 59.836 55.000 10.18 0.56 45.83 5.03
183 184 2.230892 CACGGTTGTGCTTTAGCGA 58.769 52.632 10.18 0.00 45.83 4.93
184 185 4.818417 CACGGTTGTGCTTTAGCG 57.182 55.556 0.00 0.00 45.83 4.26
192 193 2.142357 TCGAGAGAGGCACGGTTGTG 62.142 60.000 0.00 0.00 41.74 3.33
193 194 1.461091 TTCGAGAGAGGCACGGTTGT 61.461 55.000 0.00 0.00 43.69 3.32
194 195 0.319555 TTTCGAGAGAGGCACGGTTG 60.320 55.000 0.00 0.00 43.69 3.77
195 196 0.038159 CTTTCGAGAGAGGCACGGTT 60.038 55.000 0.00 0.00 43.69 4.44
196 197 1.587054 CTTTCGAGAGAGGCACGGT 59.413 57.895 0.00 0.00 43.69 4.83
197 198 1.807573 GCTTTCGAGAGAGGCACGG 60.808 63.158 7.23 0.00 43.69 4.94
198 199 0.667487 TTGCTTTCGAGAGAGGCACG 60.667 55.000 7.23 0.00 45.26 5.34
199 200 1.512926 TTTGCTTTCGAGAGAGGCAC 58.487 50.000 7.23 0.00 45.26 5.01
200 201 1.873591 GTTTTGCTTTCGAGAGAGGCA 59.126 47.619 7.23 0.00 44.45 4.75
201 202 1.197949 GGTTTTGCTTTCGAGAGAGGC 59.802 52.381 7.23 0.00 43.69 4.70
202 203 1.461127 CGGTTTTGCTTTCGAGAGAGG 59.539 52.381 7.23 0.00 43.69 3.69
203 204 2.096713 CACGGTTTTGCTTTCGAGAGAG 60.097 50.000 7.23 0.00 43.69 3.20
204 205 1.864711 CACGGTTTTGCTTTCGAGAGA 59.135 47.619 7.23 0.00 39.20 3.10
205 206 1.660333 GCACGGTTTTGCTTTCGAGAG 60.660 52.381 0.00 0.00 39.59 3.20
206 207 0.306533 GCACGGTTTTGCTTTCGAGA 59.693 50.000 0.00 0.00 39.59 4.04
207 208 0.660300 GGCACGGTTTTGCTTTCGAG 60.660 55.000 0.00 0.00 42.56 4.04
208 209 1.098712 AGGCACGGTTTTGCTTTCGA 61.099 50.000 0.00 0.00 42.56 3.71
209 210 0.660300 GAGGCACGGTTTTGCTTTCG 60.660 55.000 0.00 0.00 42.56 3.46
210 211 0.668535 AGAGGCACGGTTTTGCTTTC 59.331 50.000 0.00 0.00 42.56 2.62
211 212 0.668535 GAGAGGCACGGTTTTGCTTT 59.331 50.000 0.00 0.00 42.56 3.51
212 213 1.507141 CGAGAGGCACGGTTTTGCTT 61.507 55.000 0.00 0.00 42.56 3.91
213 214 1.961277 CGAGAGGCACGGTTTTGCT 60.961 57.895 0.00 0.00 42.56 3.91
214 215 2.556287 CGAGAGGCACGGTTTTGC 59.444 61.111 0.00 0.00 42.18 3.68
215 216 2.556287 GCGAGAGGCACGGTTTTG 59.444 61.111 0.00 0.00 42.87 2.44
216 217 3.041940 CGCGAGAGGCACGGTTTT 61.042 61.111 0.00 0.00 43.84 2.43
221 222 2.314647 TTTTTCCGCGAGAGGCACG 61.315 57.895 8.23 0.00 43.84 5.34
222 223 3.650369 TTTTTCCGCGAGAGGCAC 58.350 55.556 8.23 0.00 43.84 5.01
256 257 5.511202 GCCATGACTCTTGGAAATGGAAAAA 60.511 40.000 13.93 0.00 40.23 1.94
257 258 4.021192 GCCATGACTCTTGGAAATGGAAAA 60.021 41.667 13.93 0.00 40.23 2.29
258 259 3.511146 GCCATGACTCTTGGAAATGGAAA 59.489 43.478 13.93 0.00 40.23 3.13
259 260 3.091545 GCCATGACTCTTGGAAATGGAA 58.908 45.455 13.93 0.00 40.23 3.53
260 261 2.621407 GGCCATGACTCTTGGAAATGGA 60.621 50.000 13.93 0.00 40.23 3.41
261 262 1.753073 GGCCATGACTCTTGGAAATGG 59.247 52.381 13.93 1.54 40.67 3.16
262 263 1.402968 CGGCCATGACTCTTGGAAATG 59.597 52.381 13.93 0.00 36.26 2.32
263 264 1.004745 ACGGCCATGACTCTTGGAAAT 59.995 47.619 13.93 0.00 36.26 2.17
264 265 0.400213 ACGGCCATGACTCTTGGAAA 59.600 50.000 13.93 0.00 36.26 3.13
265 266 0.321564 CACGGCCATGACTCTTGGAA 60.322 55.000 13.93 0.00 36.26 3.53
266 267 1.191489 TCACGGCCATGACTCTTGGA 61.191 55.000 13.93 0.00 36.26 3.53
267 268 1.021390 GTCACGGCCATGACTCTTGG 61.021 60.000 24.30 6.60 44.71 3.61
268 269 2.460330 GTCACGGCCATGACTCTTG 58.540 57.895 24.30 0.00 44.71 3.02
274 275 1.977009 ACGAGAGTCACGGCCATGA 60.977 57.895 14.49 0.00 44.19 3.07
275 276 2.573869 ACGAGAGTCACGGCCATG 59.426 61.111 14.49 0.00 44.19 3.66
286 287 1.597663 ACGGTTTTGCTTTCACGAGAG 59.402 47.619 0.00 0.00 0.00 3.20
287 288 1.329292 CACGGTTTTGCTTTCACGAGA 59.671 47.619 0.00 0.00 0.00 4.04
288 289 1.741993 CACGGTTTTGCTTTCACGAG 58.258 50.000 0.00 0.00 0.00 4.18
289 290 0.248296 GCACGGTTTTGCTTTCACGA 60.248 50.000 0.00 0.00 39.59 4.35
290 291 1.206115 GGCACGGTTTTGCTTTCACG 61.206 55.000 0.00 0.00 42.56 4.35
291 292 0.102300 AGGCACGGTTTTGCTTTCAC 59.898 50.000 0.00 0.00 42.56 3.18
292 293 0.383949 GAGGCACGGTTTTGCTTTCA 59.616 50.000 0.00 0.00 42.56 2.69
293 294 0.668535 AGAGGCACGGTTTTGCTTTC 59.331 50.000 0.00 0.00 42.56 2.62
294 295 0.668535 GAGAGGCACGGTTTTGCTTT 59.331 50.000 0.00 0.00 42.56 3.51
295 296 1.507141 CGAGAGGCACGGTTTTGCTT 61.507 55.000 0.00 0.00 42.56 3.91
296 297 1.961277 CGAGAGGCACGGTTTTGCT 60.961 57.895 0.00 0.00 42.56 3.91
297 298 2.556287 CGAGAGGCACGGTTTTGC 59.444 61.111 0.00 0.00 42.18 3.68
298 299 2.556287 GCGAGAGGCACGGTTTTG 59.444 61.111 0.00 0.00 42.87 2.44
299 300 3.041940 CGCGAGAGGCACGGTTTT 61.042 61.111 0.00 0.00 43.84 2.43
308 309 1.497722 GTTTTGCTTCCGCGAGAGG 59.502 57.895 8.23 4.88 39.65 3.69
309 310 1.497722 GGTTTTGCTTCCGCGAGAG 59.502 57.895 8.23 5.93 39.65 3.20
310 311 2.314647 CGGTTTTGCTTCCGCGAGA 61.315 57.895 8.23 0.00 40.28 4.04
311 312 2.173382 CGGTTTTGCTTCCGCGAG 59.827 61.111 8.23 0.00 40.28 5.03
316 317 1.264288 CAGAGTCACGGTTTTGCTTCC 59.736 52.381 0.00 0.00 0.00 3.46
317 318 1.264288 CCAGAGTCACGGTTTTGCTTC 59.736 52.381 0.00 0.00 0.00 3.86
318 319 1.308998 CCAGAGTCACGGTTTTGCTT 58.691 50.000 0.00 0.00 0.00 3.91
319 320 1.166531 GCCAGAGTCACGGTTTTGCT 61.167 55.000 0.00 0.00 0.00 3.91
320 321 1.282875 GCCAGAGTCACGGTTTTGC 59.717 57.895 0.00 0.00 0.00 3.68
321 322 1.021202 TTGCCAGAGTCACGGTTTTG 58.979 50.000 0.00 0.00 0.00 2.44
322 323 1.757682 TTTGCCAGAGTCACGGTTTT 58.242 45.000 0.00 0.00 0.00 2.43
323 324 1.757682 TTTTGCCAGAGTCACGGTTT 58.242 45.000 0.00 0.00 0.00 3.27
324 325 1.981256 ATTTTGCCAGAGTCACGGTT 58.019 45.000 0.00 0.00 0.00 4.44
325 326 2.851263 TATTTTGCCAGAGTCACGGT 57.149 45.000 0.00 0.00 0.00 4.83
326 327 4.497473 TTTTATTTTGCCAGAGTCACGG 57.503 40.909 0.00 0.00 0.00 4.94
389 390 9.210329 GGTCTTCCTTAACTTTTGAAACAAAAA 57.790 29.630 10.15 0.00 0.00 1.94
390 391 7.542824 CGGTCTTCCTTAACTTTTGAAACAAAA 59.457 33.333 8.89 8.89 0.00 2.44
391 392 7.030768 CGGTCTTCCTTAACTTTTGAAACAAA 58.969 34.615 0.00 0.00 0.00 2.83
392 393 6.404954 CCGGTCTTCCTTAACTTTTGAAACAA 60.405 38.462 0.00 0.00 0.00 2.83
393 394 5.066764 CCGGTCTTCCTTAACTTTTGAAACA 59.933 40.000 0.00 0.00 0.00 2.83
394 395 5.066893 ACCGGTCTTCCTTAACTTTTGAAAC 59.933 40.000 0.00 0.00 0.00 2.78
395 396 5.066764 CACCGGTCTTCCTTAACTTTTGAAA 59.933 40.000 2.59 0.00 0.00 2.69
396 397 4.577283 CACCGGTCTTCCTTAACTTTTGAA 59.423 41.667 2.59 0.00 0.00 2.69
397 398 4.131596 CACCGGTCTTCCTTAACTTTTGA 58.868 43.478 2.59 0.00 0.00 2.69
398 399 4.131596 TCACCGGTCTTCCTTAACTTTTG 58.868 43.478 2.59 0.00 0.00 2.44
399 400 4.426736 TCACCGGTCTTCCTTAACTTTT 57.573 40.909 2.59 0.00 0.00 2.27
400 401 4.426736 TTCACCGGTCTTCCTTAACTTT 57.573 40.909 2.59 0.00 0.00 2.66
401 402 4.426736 TTTCACCGGTCTTCCTTAACTT 57.573 40.909 2.59 0.00 0.00 2.66
402 403 4.426736 TTTTCACCGGTCTTCCTTAACT 57.573 40.909 2.59 0.00 0.00 2.24
403 404 4.261322 GGTTTTTCACCGGTCTTCCTTAAC 60.261 45.833 2.59 3.03 35.12 2.01
404 405 3.884693 GGTTTTTCACCGGTCTTCCTTAA 59.115 43.478 2.59 0.00 35.12 1.85
405 406 3.479489 GGTTTTTCACCGGTCTTCCTTA 58.521 45.455 2.59 0.00 35.12 2.69
406 407 2.304092 GGTTTTTCACCGGTCTTCCTT 58.696 47.619 2.59 0.00 35.12 3.36
407 408 1.977056 GGTTTTTCACCGGTCTTCCT 58.023 50.000 2.59 0.00 35.12 3.36
416 417 1.327156 TCGACGTTTCGGTTTTTCACC 59.673 47.619 0.00 0.00 45.90 4.02
417 418 2.717524 TCGACGTTTCGGTTTTTCAC 57.282 45.000 0.00 0.00 45.90 3.18
418 419 3.736530 TTTCGACGTTTCGGTTTTTCA 57.263 38.095 0.00 0.00 45.90 2.69
438 439 8.658609 GGCTTTTTAAACGTTTTTCTAGGTTTT 58.341 29.630 20.19 0.00 37.34 2.43
439 440 7.818446 TGGCTTTTTAAACGTTTTTCTAGGTTT 59.182 29.630 20.19 0.00 38.94 3.27
440 441 7.321908 TGGCTTTTTAAACGTTTTTCTAGGTT 58.678 30.769 20.19 0.00 0.00 3.50
441 442 6.865411 TGGCTTTTTAAACGTTTTTCTAGGT 58.135 32.000 20.19 0.00 0.00 3.08
442 443 7.758613 TTGGCTTTTTAAACGTTTTTCTAGG 57.241 32.000 20.19 6.98 0.00 3.02
444 445 9.808808 GTTTTTGGCTTTTTAAACGTTTTTCTA 57.191 25.926 20.19 0.00 0.00 2.10
445 446 7.531198 CGTTTTTGGCTTTTTAAACGTTTTTCT 59.469 29.630 20.19 0.00 44.47 2.52
446 447 7.637842 CGTTTTTGGCTTTTTAAACGTTTTTC 58.362 30.769 20.19 2.55 44.47 2.29
447 448 7.536225 CGTTTTTGGCTTTTTAAACGTTTTT 57.464 28.000 20.19 0.00 44.47 1.94
453 454 4.247794 ACGCGTTTTTGGCTTTTTAAAC 57.752 36.364 5.58 0.00 0.00 2.01
454 455 5.747197 TCATACGCGTTTTTGGCTTTTTAAA 59.253 32.000 20.78 0.00 0.00 1.52
455 456 5.279384 TCATACGCGTTTTTGGCTTTTTAA 58.721 33.333 20.78 0.00 0.00 1.52
456 457 4.856664 TCATACGCGTTTTTGGCTTTTTA 58.143 34.783 20.78 0.00 0.00 1.52
457 458 3.707793 TCATACGCGTTTTTGGCTTTTT 58.292 36.364 20.78 0.00 0.00 1.94
458 459 3.357166 TCATACGCGTTTTTGGCTTTT 57.643 38.095 20.78 0.00 0.00 2.27
459 460 3.357166 TTCATACGCGTTTTTGGCTTT 57.643 38.095 20.78 0.00 0.00 3.51
460 461 3.357166 TTTCATACGCGTTTTTGGCTT 57.643 38.095 20.78 0.00 0.00 4.35
461 462 3.357166 TTTTCATACGCGTTTTTGGCT 57.643 38.095 20.78 0.00 0.00 4.75
482 483 4.738252 GCGTTCTCTTCGGATTTTGTTTTT 59.262 37.500 0.00 0.00 0.00 1.94
483 484 4.287720 GCGTTCTCTTCGGATTTTGTTTT 58.712 39.130 0.00 0.00 0.00 2.43
484 485 3.304458 GGCGTTCTCTTCGGATTTTGTTT 60.304 43.478 0.00 0.00 0.00 2.83
485 486 2.225727 GGCGTTCTCTTCGGATTTTGTT 59.774 45.455 0.00 0.00 0.00 2.83
486 487 1.804748 GGCGTTCTCTTCGGATTTTGT 59.195 47.619 0.00 0.00 0.00 2.83
487 488 1.130561 GGGCGTTCTCTTCGGATTTTG 59.869 52.381 0.00 0.00 0.00 2.44
488 489 1.271163 TGGGCGTTCTCTTCGGATTTT 60.271 47.619 0.00 0.00 0.00 1.82
489 490 0.323629 TGGGCGTTCTCTTCGGATTT 59.676 50.000 0.00 0.00 0.00 2.17
490 491 0.108138 CTGGGCGTTCTCTTCGGATT 60.108 55.000 0.00 0.00 0.00 3.01
491 492 0.970937 TCTGGGCGTTCTCTTCGGAT 60.971 55.000 0.00 0.00 0.00 4.18
492 493 1.595993 CTCTGGGCGTTCTCTTCGGA 61.596 60.000 0.00 0.00 0.00 4.55
493 494 1.153745 CTCTGGGCGTTCTCTTCGG 60.154 63.158 0.00 0.00 0.00 4.30
494 495 1.807573 GCTCTGGGCGTTCTCTTCG 60.808 63.158 0.00 0.00 0.00 3.79
495 496 4.193653 GCTCTGGGCGTTCTCTTC 57.806 61.111 0.00 0.00 0.00 2.87
525 526 3.628280 GACACGCTCTCGGTCACCC 62.628 68.421 0.00 0.00 40.69 4.61
526 527 2.126424 GACACGCTCTCGGTCACC 60.126 66.667 0.00 0.00 40.69 4.02
527 528 1.004277 CTTGACACGCTCTCGGTCAC 61.004 60.000 0.00 0.00 41.77 3.67
528 529 1.285950 CTTGACACGCTCTCGGTCA 59.714 57.895 0.00 0.00 41.01 4.02
529 530 1.004277 CACTTGACACGCTCTCGGTC 61.004 60.000 0.00 0.00 40.69 4.79
530 531 1.007271 CACTTGACACGCTCTCGGT 60.007 57.895 0.00 0.00 40.69 4.69
531 532 1.734477 CCACTTGACACGCTCTCGG 60.734 63.158 0.00 0.00 40.69 4.63
532 533 2.375766 GCCACTTGACACGCTCTCG 61.376 63.158 0.00 0.00 42.43 4.04
533 534 2.375766 CGCCACTTGACACGCTCTC 61.376 63.158 0.00 0.00 0.00 3.20
534 535 2.356313 CGCCACTTGACACGCTCT 60.356 61.111 0.00 0.00 0.00 4.09
535 536 2.244651 AACGCCACTTGACACGCTC 61.245 57.895 0.00 0.00 0.00 5.03
536 537 2.203015 AACGCCACTTGACACGCT 60.203 55.556 0.00 0.00 0.00 5.07
537 538 1.841663 ATCAACGCCACTTGACACGC 61.842 55.000 0.00 0.00 32.95 5.34
538 539 0.163788 GATCAACGCCACTTGACACG 59.836 55.000 0.00 0.00 32.95 4.49
539 540 1.461127 GAGATCAACGCCACTTGACAC 59.539 52.381 0.00 0.00 32.95 3.67
540 541 1.344438 AGAGATCAACGCCACTTGACA 59.656 47.619 0.00 0.00 32.95 3.58
541 542 1.728971 CAGAGATCAACGCCACTTGAC 59.271 52.381 0.00 0.00 32.95 3.18
542 543 1.941209 GCAGAGATCAACGCCACTTGA 60.941 52.381 0.00 0.00 34.65 3.02
543 544 0.445436 GCAGAGATCAACGCCACTTG 59.555 55.000 0.00 0.00 0.00 3.16
544 545 0.035317 TGCAGAGATCAACGCCACTT 59.965 50.000 0.00 0.00 0.00 3.16
545 546 0.035317 TTGCAGAGATCAACGCCACT 59.965 50.000 0.00 0.00 0.00 4.00
546 547 0.445436 CTTGCAGAGATCAACGCCAC 59.555 55.000 0.00 0.00 0.00 5.01
547 548 1.300971 GCTTGCAGAGATCAACGCCA 61.301 55.000 0.00 0.00 0.00 5.69
548 549 1.427020 GCTTGCAGAGATCAACGCC 59.573 57.895 0.00 0.00 0.00 5.68
549 550 1.023513 AGGCTTGCAGAGATCAACGC 61.024 55.000 0.00 0.00 0.00 4.84
550 551 1.396301 GAAGGCTTGCAGAGATCAACG 59.604 52.381 3.46 0.00 0.00 4.10
551 552 1.742268 GGAAGGCTTGCAGAGATCAAC 59.258 52.381 14.34 0.00 0.00 3.18
552 553 1.352017 TGGAAGGCTTGCAGAGATCAA 59.648 47.619 18.03 0.00 0.00 2.57
553 554 0.986527 TGGAAGGCTTGCAGAGATCA 59.013 50.000 18.03 0.00 0.00 2.92
554 555 2.119801 TTGGAAGGCTTGCAGAGATC 57.880 50.000 20.76 0.00 30.85 2.75
555 556 2.444421 CTTTGGAAGGCTTGCAGAGAT 58.556 47.619 27.95 0.00 35.63 2.75
556 557 1.546323 CCTTTGGAAGGCTTGCAGAGA 60.546 52.381 31.71 17.39 42.78 3.10
557 558 0.886563 CCTTTGGAAGGCTTGCAGAG 59.113 55.000 25.91 25.91 42.78 3.35
558 559 3.040965 CCTTTGGAAGGCTTGCAGA 57.959 52.632 20.76 15.98 42.78 4.26
567 568 1.528129 AAAGAGCGCTCCTTTGGAAG 58.472 50.000 32.94 0.00 33.07 3.46
568 569 2.812011 GTTAAAGAGCGCTCCTTTGGAA 59.188 45.455 32.94 19.21 35.65 3.53
569 570 2.038557 AGTTAAAGAGCGCTCCTTTGGA 59.961 45.455 32.94 19.66 35.65 3.53
570 571 2.427506 AGTTAAAGAGCGCTCCTTTGG 58.572 47.619 32.94 0.00 35.65 3.28
571 572 4.489679 AAAGTTAAAGAGCGCTCCTTTG 57.510 40.909 32.94 0.00 35.65 2.77
572 573 5.515797 AAAAAGTTAAAGAGCGCTCCTTT 57.484 34.783 32.94 27.73 37.57 3.11
593 594 0.457851 CGTGCACCCCTCAACAAAAA 59.542 50.000 12.15 0.00 0.00 1.94
594 595 0.681564 ACGTGCACCCCTCAACAAAA 60.682 50.000 12.15 0.00 0.00 2.44
595 596 0.681564 AACGTGCACCCCTCAACAAA 60.682 50.000 12.15 0.00 0.00 2.83
596 597 0.180642 TAACGTGCACCCCTCAACAA 59.819 50.000 12.15 0.00 0.00 2.83
597 598 0.180642 TTAACGTGCACCCCTCAACA 59.819 50.000 12.15 0.00 0.00 3.33
598 599 0.589708 GTTAACGTGCACCCCTCAAC 59.410 55.000 12.15 5.10 0.00 3.18
599 600 0.470766 AGTTAACGTGCACCCCTCAA 59.529 50.000 12.15 0.00 0.00 3.02
600 601 1.274167 CTAGTTAACGTGCACCCCTCA 59.726 52.381 12.15 0.00 0.00 3.86
601 602 1.274447 ACTAGTTAACGTGCACCCCTC 59.726 52.381 12.15 0.00 0.00 4.30
602 603 1.345063 ACTAGTTAACGTGCACCCCT 58.655 50.000 12.15 2.60 0.00 4.79
603 604 1.802365 CAACTAGTTAACGTGCACCCC 59.198 52.381 12.15 0.00 0.00 4.95
604 605 1.196127 GCAACTAGTTAACGTGCACCC 59.804 52.381 12.15 0.00 0.00 4.61
605 606 2.140717 AGCAACTAGTTAACGTGCACC 58.859 47.619 16.62 0.00 0.00 5.01
606 607 3.057734 AGAGCAACTAGTTAACGTGCAC 58.942 45.455 16.62 6.82 0.00 4.57
607 608 3.243602 TGAGAGCAACTAGTTAACGTGCA 60.244 43.478 16.62 5.89 0.00 4.57
608 609 3.121445 GTGAGAGCAACTAGTTAACGTGC 59.879 47.826 8.04 8.12 0.00 5.34
609 610 3.673809 GGTGAGAGCAACTAGTTAACGTG 59.326 47.826 8.04 0.00 0.00 4.49
610 611 3.319972 TGGTGAGAGCAACTAGTTAACGT 59.680 43.478 8.04 0.00 31.28 3.99
611 612 3.909430 TGGTGAGAGCAACTAGTTAACG 58.091 45.455 8.04 0.00 31.28 3.18
612 613 4.152580 GCTTGGTGAGAGCAACTAGTTAAC 59.847 45.833 8.04 3.72 37.00 2.01
613 614 4.040461 AGCTTGGTGAGAGCAACTAGTTAA 59.960 41.667 8.04 0.00 42.56 2.01
614 615 3.578716 AGCTTGGTGAGAGCAACTAGTTA 59.421 43.478 8.04 0.00 42.56 2.24
615 616 2.370189 AGCTTGGTGAGAGCAACTAGTT 59.630 45.455 1.12 1.12 42.56 2.24
616 617 1.974236 AGCTTGGTGAGAGCAACTAGT 59.026 47.619 0.00 0.00 42.56 2.57
617 618 2.028658 TGAGCTTGGTGAGAGCAACTAG 60.029 50.000 0.00 0.00 42.56 2.57
618 619 1.970640 TGAGCTTGGTGAGAGCAACTA 59.029 47.619 0.00 0.00 42.56 2.24
619 620 0.761187 TGAGCTTGGTGAGAGCAACT 59.239 50.000 0.00 0.00 42.56 3.16
620 621 1.818642 ATGAGCTTGGTGAGAGCAAC 58.181 50.000 0.00 0.00 42.56 4.17
621 622 2.355108 GGTATGAGCTTGGTGAGAGCAA 60.355 50.000 0.00 0.00 42.56 3.91
622 623 1.208052 GGTATGAGCTTGGTGAGAGCA 59.792 52.381 0.00 0.00 42.56 4.26
623 624 1.804372 CGGTATGAGCTTGGTGAGAGC 60.804 57.143 0.00 0.00 40.43 4.09
624 625 1.804372 GCGGTATGAGCTTGGTGAGAG 60.804 57.143 0.00 0.00 0.00 3.20
625 626 0.175760 GCGGTATGAGCTTGGTGAGA 59.824 55.000 0.00 0.00 0.00 3.27
626 627 0.811616 GGCGGTATGAGCTTGGTGAG 60.812 60.000 0.00 0.00 34.52 3.51
627 628 1.220749 GGCGGTATGAGCTTGGTGA 59.779 57.895 0.00 0.00 34.52 4.02
628 629 2.173669 CGGCGGTATGAGCTTGGTG 61.174 63.158 0.00 0.00 34.52 4.17
629 630 2.186903 CGGCGGTATGAGCTTGGT 59.813 61.111 0.00 0.00 34.52 3.67
630 631 3.272334 GCGGCGGTATGAGCTTGG 61.272 66.667 9.78 0.00 34.52 3.61
631 632 1.815421 AAGCGGCGGTATGAGCTTG 60.815 57.895 13.69 0.00 46.64 4.01
632 633 2.584608 AAGCGGCGGTATGAGCTT 59.415 55.556 13.69 0.00 44.08 3.74
633 634 0.177141 TTTAAGCGGCGGTATGAGCT 59.823 50.000 13.69 0.00 42.35 4.09
634 635 1.003866 CTTTTAAGCGGCGGTATGAGC 60.004 52.381 13.69 0.00 0.00 4.26
635 636 1.597663 CCTTTTAAGCGGCGGTATGAG 59.402 52.381 13.69 8.28 0.00 2.90
636 637 1.658994 CCTTTTAAGCGGCGGTATGA 58.341 50.000 13.69 0.00 0.00 2.15
637 638 0.661020 CCCTTTTAAGCGGCGGTATG 59.339 55.000 13.69 0.00 0.00 2.39
638 639 1.099295 GCCCTTTTAAGCGGCGGTAT 61.099 55.000 13.69 5.49 34.34 2.73
639 640 1.746239 GCCCTTTTAAGCGGCGGTA 60.746 57.895 13.69 0.00 34.34 4.02
640 641 3.060000 GCCCTTTTAAGCGGCGGT 61.060 61.111 5.44 5.44 34.34 5.68
641 642 3.822192 GGCCCTTTTAAGCGGCGG 61.822 66.667 9.78 0.00 40.85 6.13
642 643 2.148558 TTTGGCCCTTTTAAGCGGCG 62.149 55.000 0.51 0.51 40.85 6.46
643 644 0.669318 GTTTGGCCCTTTTAAGCGGC 60.669 55.000 0.00 11.34 39.89 6.53
644 645 0.966179 AGTTTGGCCCTTTTAAGCGG 59.034 50.000 0.00 0.00 0.00 5.52
645 646 2.296190 AGAAGTTTGGCCCTTTTAAGCG 59.704 45.455 0.00 0.00 0.00 4.68
646 647 4.336889 AAGAAGTTTGGCCCTTTTAAGC 57.663 40.909 0.00 0.00 0.00 3.09
647 648 6.040955 AGAGAAAGAAGTTTGGCCCTTTTAAG 59.959 38.462 0.00 0.00 0.00 1.85
648 649 5.897250 AGAGAAAGAAGTTTGGCCCTTTTAA 59.103 36.000 0.00 0.00 0.00 1.52
742 744 3.066760 CGATAAGCCAGAAAAATCCACCC 59.933 47.826 0.00 0.00 0.00 4.61
749 751 5.160641 GCAATGTTCGATAAGCCAGAAAAA 58.839 37.500 0.00 0.00 0.00 1.94
789 791 6.899393 TTCTACCTAAGTCGGTTTGTAGAA 57.101 37.500 0.00 0.00 38.11 2.10
806 808 2.096762 CGTTTCCGTTTCCGTTTCTACC 60.097 50.000 0.00 0.00 0.00 3.18
830 832 0.035056 CTACAGCTTGGGACCTTGGG 60.035 60.000 0.00 0.00 0.00 4.12
861 871 4.139786 GGCGTCGGGATATATATGGACTA 58.860 47.826 0.00 0.00 0.00 2.59
903 913 0.596082 GTGTGGTTCGGATTGGTTGG 59.404 55.000 0.00 0.00 0.00 3.77
1032 1069 2.436292 CCGTCGTCCTCCTCGTCT 60.436 66.667 0.00 0.00 0.00 4.18
1354 4615 3.383505 TGTAACGATGATCTAGGTGGTGG 59.616 47.826 0.00 0.00 0.00 4.61
1355 4616 4.649088 TGTAACGATGATCTAGGTGGTG 57.351 45.455 0.00 0.00 0.00 4.17
1356 4617 5.010112 CAGATGTAACGATGATCTAGGTGGT 59.990 44.000 0.00 0.00 0.00 4.16
1458 4999 9.649316 AAACTAGCTAGTATGTCCTCTTATCTT 57.351 33.333 26.29 9.09 34.99 2.40
1459 5000 9.649316 AAAACTAGCTAGTATGTCCTCTTATCT 57.351 33.333 26.29 3.01 34.99 1.98
1460 5001 9.685828 CAAAACTAGCTAGTATGTCCTCTTATC 57.314 37.037 26.29 0.00 34.99 1.75
1461 5002 8.145122 GCAAAACTAGCTAGTATGTCCTCTTAT 58.855 37.037 26.29 3.67 34.99 1.73
1511 5573 5.750547 TCAATCGCAGCTTCTCTTAATGTAG 59.249 40.000 0.00 0.00 0.00 2.74
1608 5677 0.095935 CAAGCAGCGTCCTTGAATCG 59.904 55.000 7.90 0.00 41.64 3.34
1754 6540 8.951787 AGTTACATGTTACAGACAAGTTACAA 57.048 30.769 16.65 0.00 40.18 2.41
1756 6542 8.823818 ACAAGTTACATGTTACAGACAAGTTAC 58.176 33.333 16.65 0.00 42.62 2.50
1759 6545 7.272978 AGACAAGTTACATGTTACAGACAAGT 58.727 34.615 16.65 5.91 42.62 3.16
1760 6546 7.715265 AGACAAGTTACATGTTACAGACAAG 57.285 36.000 16.65 3.14 42.62 3.16
1766 6552 9.158233 GCCTAAATAGACAAGTTACATGTTACA 57.842 33.333 16.65 0.00 0.00 2.41
2225 7596 1.769098 CGGGATCATTCAGTGCTGCG 61.769 60.000 0.00 0.00 0.00 5.18
2507 7878 2.173356 ACCATAGCCATTGAGCTTGCTA 59.827 45.455 5.20 0.00 41.41 3.49
2568 7939 3.311596 GGCAACAACTAATTACTAGGCCG 59.688 47.826 0.00 0.00 31.14 6.13
2586 7957 6.038825 TGTCTTGATTTAAGAAACGAAGGCAA 59.961 34.615 0.00 0.00 46.48 4.52
2600 7971 7.654022 ACAAACTTTTCCCTGTCTTGATTTA 57.346 32.000 0.00 0.00 0.00 1.40
2608 7979 4.499188 GGCAGTAACAAACTTTTCCCTGTC 60.499 45.833 0.00 0.00 35.76 3.51
2771 8142 7.140475 GCAAAAGCTTTGCAAAATTTAAGTG 57.860 32.000 13.54 12.41 44.34 3.16
2784 8155 5.550232 AACCAAAGAAAGCAAAAGCTTTG 57.450 34.783 18.89 8.26 44.05 2.77
2786 8157 5.116180 GGTAACCAAAGAAAGCAAAAGCTT 58.884 37.500 0.00 0.00 0.00 3.74
2799 8171 5.503846 GCACAAATTTTGCTGGTAACCAAAG 60.504 40.000 9.04 0.00 37.00 2.77
2871 8275 3.737172 CCGGGAAGTGCTTTGGCG 61.737 66.667 0.00 0.00 42.25 5.69
2889 8293 5.053145 CCTGGAAGATATTGGAAGAGTTCG 58.947 45.833 0.00 0.00 34.07 3.95
2920 8324 3.264947 TCAGAATTTGGAGATGTCAGCG 58.735 45.455 0.00 0.00 0.00 5.18
2950 8354 3.627395 AAGATAACCGCTGGATGAACA 57.373 42.857 1.50 0.00 0.00 3.18
3071 8492 4.389374 TCCTCTTTAAAGGAGCACACTTG 58.611 43.478 15.13 0.00 40.60 3.16
3072 8493 4.706842 TCCTCTTTAAAGGAGCACACTT 57.293 40.909 15.13 0.00 40.60 3.16
3106 8527 0.252467 AGGGCTCTACTCCACTTGCT 60.252 55.000 0.00 0.00 0.00 3.91
3121 8542 3.821033 CAGCACTATGGGTATTTAAGGGC 59.179 47.826 0.00 0.00 36.84 5.19
3122 8543 4.821805 CACAGCACTATGGGTATTTAAGGG 59.178 45.833 0.00 0.00 0.00 3.95
3123 8544 4.275936 GCACAGCACTATGGGTATTTAAGG 59.724 45.833 0.00 0.00 0.00 2.69
3131 8575 1.538047 CTTTGCACAGCACTATGGGT 58.462 50.000 0.00 0.00 38.71 4.51
3184 8628 1.287730 GACACTCTTGCTGCGACCTG 61.288 60.000 0.00 0.00 0.00 4.00
3226 8672 6.648879 ACTTGCAGGCTGTTTATAGAAAAA 57.351 33.333 17.16 0.00 0.00 1.94
3234 8680 3.550820 TCAGAAACTTGCAGGCTGTTTA 58.449 40.909 17.16 0.00 34.55 2.01
3269 8715 2.346766 TATGGTATTGCTGCACAGGG 57.653 50.000 0.00 0.00 0.00 4.45
3319 8765 2.288666 CACGGATGGAACTAATGGTGG 58.711 52.381 0.00 0.00 0.00 4.61
3322 8768 1.308998 GGCACGGATGGAACTAATGG 58.691 55.000 0.00 0.00 0.00 3.16
3420 8878 0.602905 AACTTTCTTCACCTCGCGGG 60.603 55.000 6.13 0.59 41.89 6.13
3423 8881 3.064820 TCAACAAACTTTCTTCACCTCGC 59.935 43.478 0.00 0.00 0.00 5.03
3450 8908 4.456911 ACTGGTGTTGACATCATCATTGAC 59.543 41.667 0.00 0.00 36.24 3.18
3476 8934 3.815809 TCAACCAAACACACCCTTAGAG 58.184 45.455 0.00 0.00 0.00 2.43
3493 8951 6.385649 TTCCATAACAGTTGGTTCTTCAAC 57.614 37.500 0.00 0.00 45.22 3.18
3494 8952 6.015519 CCATTCCATAACAGTTGGTTCTTCAA 60.016 38.462 0.00 0.00 40.96 2.69
3495 8953 5.476599 CCATTCCATAACAGTTGGTTCTTCA 59.523 40.000 0.00 0.00 40.96 3.02
3496 8954 5.710099 TCCATTCCATAACAGTTGGTTCTTC 59.290 40.000 0.00 0.00 40.96 2.87
3497 8955 5.640147 TCCATTCCATAACAGTTGGTTCTT 58.360 37.500 0.00 0.00 40.96 2.52
3498 8956 5.255397 TCCATTCCATAACAGTTGGTTCT 57.745 39.130 0.00 0.00 40.96 3.01
3499 8957 5.975693 TTCCATTCCATAACAGTTGGTTC 57.024 39.130 0.00 0.00 40.96 3.62
3500 8958 5.187576 CCATTCCATTCCATAACAGTTGGTT 59.812 40.000 0.00 0.00 43.62 3.67
3501 8959 4.711355 CCATTCCATTCCATAACAGTTGGT 59.289 41.667 0.00 0.00 35.64 3.67
3502 8960 4.711355 ACCATTCCATTCCATAACAGTTGG 59.289 41.667 0.00 0.00 35.45 3.77
3503 8961 5.920193 ACCATTCCATTCCATAACAGTTG 57.080 39.130 0.00 0.00 0.00 3.16
3504 8962 6.530019 GAACCATTCCATTCCATAACAGTT 57.470 37.500 0.00 0.00 0.00 3.16
3528 8986 1.812571 CTGACCCGTTCCTTTGGAATG 59.187 52.381 10.66 10.66 44.04 2.67
3529 8987 1.423921 ACTGACCCGTTCCTTTGGAAT 59.576 47.619 2.17 0.00 44.04 3.01
3530 8988 0.841289 ACTGACCCGTTCCTTTGGAA 59.159 50.000 0.00 0.00 39.66 3.53
3531 8989 0.841289 AACTGACCCGTTCCTTTGGA 59.159 50.000 0.00 0.00 0.00 3.53
3532 8990 1.235724 GAACTGACCCGTTCCTTTGG 58.764 55.000 0.00 0.00 37.82 3.28
3542 9000 0.602905 CACAGGAACGGAACTGACCC 60.603 60.000 9.08 0.00 38.09 4.46
3543 9001 0.106149 ACACAGGAACGGAACTGACC 59.894 55.000 9.08 0.00 38.09 4.02
3544 9002 1.949465 AACACAGGAACGGAACTGAC 58.051 50.000 9.08 0.00 38.09 3.51
3545 9003 2.285083 CAAACACAGGAACGGAACTGA 58.715 47.619 9.08 0.00 38.09 3.41
3546 9004 1.333619 CCAAACACAGGAACGGAACTG 59.666 52.381 0.00 0.00 40.48 3.16
3547 9005 1.064979 ACCAAACACAGGAACGGAACT 60.065 47.619 0.00 0.00 0.00 3.01
3548 9006 1.385528 ACCAAACACAGGAACGGAAC 58.614 50.000 0.00 0.00 0.00 3.62
3549 9007 3.181453 TGATACCAAACACAGGAACGGAA 60.181 43.478 0.00 0.00 0.00 4.30
3550 9008 2.369203 TGATACCAAACACAGGAACGGA 59.631 45.455 0.00 0.00 0.00 4.69
3551 9009 2.742053 CTGATACCAAACACAGGAACGG 59.258 50.000 0.00 0.00 0.00 4.44
3552 9010 2.159627 GCTGATACCAAACACAGGAACG 59.840 50.000 0.00 0.00 0.00 3.95
3553 9011 3.146066 TGCTGATACCAAACACAGGAAC 58.854 45.455 0.00 0.00 0.00 3.62
3554 9012 3.500448 TGCTGATACCAAACACAGGAA 57.500 42.857 0.00 0.00 0.00 3.36
3555 9013 3.500448 TTGCTGATACCAAACACAGGA 57.500 42.857 0.00 0.00 0.00 3.86
3556 9014 4.582701 TTTTGCTGATACCAAACACAGG 57.417 40.909 0.00 0.00 32.40 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.