Multiple sequence alignment - TraesCS4D01G064700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G064700 chr4D 100.000 4232 0 0 1 4232 40112671 40116902 0.000000e+00 7816.0
1 TraesCS4D01G064700 chr4D 89.826 806 60 13 3337 4128 375117697 375118494 0.000000e+00 1014.0
2 TraesCS4D01G064700 chr4D 91.489 141 12 0 3198 3338 29662393 29662253 1.200000e-45 195.0
3 TraesCS4D01G064700 chr4B 91.770 2418 82 26 608 2989 58564679 58567015 0.000000e+00 3254.0
4 TraesCS4D01G064700 chr4B 88.141 312 31 3 1 310 58440159 58440466 2.400000e-97 366.0
5 TraesCS4D01G064700 chr4B 88.060 201 22 1 306 504 58564214 58564414 1.970000e-58 237.0
6 TraesCS4D01G064700 chr4A 91.733 2141 67 25 573 2685 559951519 559949461 0.000000e+00 2872.0
7 TraesCS4D01G064700 chr4A 87.282 802 83 11 3340 4128 597896842 597896047 0.000000e+00 898.0
8 TraesCS4D01G064700 chr4A 90.095 525 47 4 1 521 559952406 559951883 0.000000e+00 676.0
9 TraesCS4D01G064700 chr4A 94.118 255 15 0 2735 2989 559949466 559949212 5.130000e-104 388.0
10 TraesCS4D01G064700 chr4A 87.500 144 12 4 3195 3338 626924969 626925106 1.220000e-35 161.0
11 TraesCS4D01G064700 chr4A 91.589 107 9 0 3055 3161 559948889 559948783 9.480000e-32 148.0
12 TraesCS4D01G064700 chr4A 95.775 71 3 0 2986 3056 559949053 559948983 9.620000e-22 115.0
13 TraesCS4D01G064700 chr3B 88.642 810 75 9 3337 4134 548054326 548053522 0.000000e+00 970.0
14 TraesCS4D01G064700 chr3B 93.525 139 7 1 3195 3333 615529991 615529855 5.550000e-49 206.0
15 TraesCS4D01G064700 chr3B 87.013 154 16 2 3012 3165 615530552 615530403 2.020000e-38 171.0
16 TraesCS4D01G064700 chr3B 91.892 74 6 0 4159 4232 647227870 647227797 2.080000e-18 104.0
17 TraesCS4D01G064700 chr5B 87.961 814 81 8 3334 4134 265436455 265435646 0.000000e+00 944.0
18 TraesCS4D01G064700 chr5B 86.101 813 73 20 3330 4128 338933574 338934360 0.000000e+00 839.0
19 TraesCS4D01G064700 chr5B 81.757 148 27 0 148 295 50226975 50227122 1.600000e-24 124.0
20 TraesCS4D01G064700 chr5B 86.111 72 10 0 224 295 50003376 50003447 1.260000e-10 78.7
21 TraesCS4D01G064700 chr1D 88.323 805 70 14 3338 4128 289773033 289773827 0.000000e+00 944.0
22 TraesCS4D01G064700 chr1D 87.141 801 86 12 3335 4128 364522420 364523210 0.000000e+00 893.0
23 TraesCS4D01G064700 chr1D 87.879 99 10 2 4128 4226 42981846 42981942 9.620000e-22 115.0
24 TraesCS4D01G064700 chr7A 88.148 810 72 13 3335 4128 736501117 736501918 0.000000e+00 942.0
25 TraesCS4D01G064700 chr5D 88.060 804 68 15 3338 4128 385949453 385950241 0.000000e+00 928.0
26 TraesCS4D01G064700 chr5D 88.189 762 69 11 3380 4128 356999460 357000213 0.000000e+00 889.0
27 TraesCS4D01G064700 chr5D 92.958 142 10 0 3195 3336 109565452 109565311 1.540000e-49 207.0
28 TraesCS4D01G064700 chr5D 84.409 186 28 1 146 330 46732444 46732259 9.350000e-42 182.0
29 TraesCS4D01G064700 chr5D 87.662 154 17 1 3012 3165 109566013 109565862 1.210000e-40 178.0
30 TraesCS4D01G064700 chr5D 82.569 109 18 1 4125 4232 545283069 545282961 1.250000e-15 95.3
31 TraesCS4D01G064700 chr6D 87.469 806 78 13 3337 4130 380588909 380589703 0.000000e+00 907.0
32 TraesCS4D01G064700 chr6D 84.925 796 71 17 3338 4128 97667427 97668178 0.000000e+00 760.0
33 TraesCS4D01G064700 chr6D 85.897 156 14 5 3014 3165 51195670 51195519 4.380000e-35 159.0
34 TraesCS4D01G064700 chr6D 85.443 158 15 5 3008 3161 306834550 306834703 1.580000e-34 158.0
35 TraesCS4D01G064700 chr3D 86.989 807 75 13 3337 4131 491992986 491992198 0.000000e+00 881.0
36 TraesCS4D01G064700 chr3D 90.972 144 13 0 3195 3338 459498798 459498941 1.200000e-45 195.0
37 TraesCS4D01G064700 chr3D 88.961 154 16 1 3012 3165 15699625 15699473 5.590000e-44 189.0
38 TraesCS4D01G064700 chr3D 89.781 137 12 2 3199 3334 15699042 15698907 1.560000e-39 174.0
39 TraesCS4D01G064700 chr5A 83.538 814 103 24 3334 4128 632833204 632834005 0.000000e+00 732.0
40 TraesCS4D01G064700 chr7B 87.063 572 62 5 3562 4126 616568973 616569539 1.660000e-178 636.0
41 TraesCS4D01G064700 chr7B 86.713 572 65 4 3562 4126 616688799 616689366 3.590000e-175 625.0
42 TraesCS4D01G064700 chr6B 93.056 144 10 0 3195 3338 269077587 269077444 1.190000e-50 211.0
43 TraesCS4D01G064700 chr6B 87.975 158 16 2 3009 3165 663019623 663019778 2.600000e-42 183.0
44 TraesCS4D01G064700 chr6B 91.589 107 9 0 4126 4232 652148818 652148712 9.480000e-32 148.0
45 TraesCS4D01G064700 chr2B 93.525 139 7 1 3195 3333 643299970 643299834 5.550000e-49 206.0
46 TraesCS4D01G064700 chr2B 87.013 154 16 2 3012 3165 643300531 643300382 2.020000e-38 171.0
47 TraesCS4D01G064700 chr2B 91.589 107 9 0 4126 4232 758149064 758148958 9.480000e-32 148.0
48 TraesCS4D01G064700 chr6A 87.013 154 16 2 3009 3162 613642671 613642820 2.020000e-38 171.0
49 TraesCS4D01G064700 chr1A 87.500 144 17 1 3195 3338 52531144 52531286 9.410000e-37 165.0
50 TraesCS4D01G064700 chr2D 91.176 102 9 0 4126 4227 33023779 33023880 5.710000e-29 139.0
51 TraesCS4D01G064700 chr1B 88.679 106 8 3 4128 4232 1184073 1183971 4.440000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G064700 chr4D 40112671 40116902 4231 False 7816.0 7816 100.000 1 4232 1 chr4D.!!$F1 4231
1 TraesCS4D01G064700 chr4D 375117697 375118494 797 False 1014.0 1014 89.826 3337 4128 1 chr4D.!!$F2 791
2 TraesCS4D01G064700 chr4B 58564214 58567015 2801 False 1745.5 3254 89.915 306 2989 2 chr4B.!!$F2 2683
3 TraesCS4D01G064700 chr4A 597896047 597896842 795 True 898.0 898 87.282 3340 4128 1 chr4A.!!$R1 788
4 TraesCS4D01G064700 chr4A 559948783 559952406 3623 True 839.8 2872 92.662 1 3161 5 chr4A.!!$R2 3160
5 TraesCS4D01G064700 chr3B 548053522 548054326 804 True 970.0 970 88.642 3337 4134 1 chr3B.!!$R1 797
6 TraesCS4D01G064700 chr5B 265435646 265436455 809 True 944.0 944 87.961 3334 4134 1 chr5B.!!$R1 800
7 TraesCS4D01G064700 chr5B 338933574 338934360 786 False 839.0 839 86.101 3330 4128 1 chr5B.!!$F3 798
8 TraesCS4D01G064700 chr1D 289773033 289773827 794 False 944.0 944 88.323 3338 4128 1 chr1D.!!$F2 790
9 TraesCS4D01G064700 chr1D 364522420 364523210 790 False 893.0 893 87.141 3335 4128 1 chr1D.!!$F3 793
10 TraesCS4D01G064700 chr7A 736501117 736501918 801 False 942.0 942 88.148 3335 4128 1 chr7A.!!$F1 793
11 TraesCS4D01G064700 chr5D 385949453 385950241 788 False 928.0 928 88.060 3338 4128 1 chr5D.!!$F2 790
12 TraesCS4D01G064700 chr5D 356999460 357000213 753 False 889.0 889 88.189 3380 4128 1 chr5D.!!$F1 748
13 TraesCS4D01G064700 chr6D 380588909 380589703 794 False 907.0 907 87.469 3337 4130 1 chr6D.!!$F3 793
14 TraesCS4D01G064700 chr6D 97667427 97668178 751 False 760.0 760 84.925 3338 4128 1 chr6D.!!$F1 790
15 TraesCS4D01G064700 chr3D 491992198 491992986 788 True 881.0 881 86.989 3337 4131 1 chr3D.!!$R1 794
16 TraesCS4D01G064700 chr5A 632833204 632834005 801 False 732.0 732 83.538 3334 4128 1 chr5A.!!$F1 794
17 TraesCS4D01G064700 chr7B 616568973 616569539 566 False 636.0 636 87.063 3562 4126 1 chr7B.!!$F1 564
18 TraesCS4D01G064700 chr7B 616688799 616689366 567 False 625.0 625 86.713 3562 4126 1 chr7B.!!$F2 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 554 0.037232 CTTGGACTCGGGAGGTTGTC 60.037 60.000 0.0 0.0 0.0 3.18 F
559 564 1.003718 GAGGTTGTCGGGGTTCCTG 60.004 63.158 0.0 0.0 0.0 3.86 F
596 913 1.119684 GAGAGAGGAAGAGGAAGGGC 58.880 60.000 0.0 0.0 0.0 5.19 F
2180 2531 1.519455 GAGGAGGACGCCGTTGATG 60.519 63.158 0.0 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2495 2875 1.613925 CCTAGCCTGGAAATCGATCGA 59.386 52.381 21.86 21.86 0.00 3.59 R
2496 2876 1.613925 TCCTAGCCTGGAAATCGATCG 59.386 52.381 9.36 9.36 32.39 3.69 R
2499 2879 2.032620 GAGTCCTAGCCTGGAAATCGA 58.967 52.381 0.00 0.00 37.93 3.59 R
3665 4336 0.251832 ACACACTCCATCGTCTCCCT 60.252 55.000 0.00 0.00 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.222603 AGGGAAAACATTTCGCTTCACT 58.777 40.909 14.39 0.00 38.34 3.41
26 27 3.004734 AGGGAAAACATTTCGCTTCACTG 59.995 43.478 14.39 0.00 38.34 3.66
28 29 3.975035 GGAAAACATTTCGCTTCACTGAC 59.025 43.478 0.00 0.00 0.00 3.51
47 48 1.790157 ACTAGGAGGTAGAGGGGATGG 59.210 57.143 0.00 0.00 32.41 3.51
56 57 2.277008 AGAGGGGATGGACAATGAGT 57.723 50.000 0.00 0.00 0.00 3.41
64 65 4.321974 GGGATGGACAATGAGTTTTGGAAC 60.322 45.833 0.00 0.00 35.97 3.62
65 66 4.280677 GGATGGACAATGAGTTTTGGAACA 59.719 41.667 0.00 0.00 38.26 3.18
95 97 2.286772 GCCATTTTATAAGGGTGCGACG 60.287 50.000 0.00 0.00 37.52 5.12
102 104 0.810648 TAAGGGTGCGACGTCGTATT 59.189 50.000 35.48 24.89 42.22 1.89
129 131 1.987855 CGTGGCTAGAACCCCCTCA 60.988 63.158 0.00 0.00 0.00 3.86
134 136 0.761802 GCTAGAACCCCCTCATCCAG 59.238 60.000 0.00 0.00 0.00 3.86
175 177 2.905085 CCTGCACTATCTGGGATCTGAT 59.095 50.000 0.00 0.00 35.97 2.90
177 179 2.636403 TGCACTATCTGGGATCTGATGG 59.364 50.000 0.00 0.00 36.43 3.51
200 202 2.097629 GGACCCTAAAATTCAGCGCTTC 59.902 50.000 7.50 0.00 0.00 3.86
218 220 2.423926 TCGTCTGCAAGTCTCTCAAC 57.576 50.000 0.00 0.00 33.76 3.18
227 229 1.374758 GTCTCTCAACGGCCAGGTG 60.375 63.158 2.24 4.72 39.43 4.00
280 282 1.004918 CCCTCGTCTTCCACCACAC 60.005 63.158 0.00 0.00 0.00 3.82
285 287 0.663568 CGTCTTCCACCACACGAGTC 60.664 60.000 0.00 0.00 34.06 3.36
296 298 0.469331 ACACGAGTCTTCTCACCCCA 60.469 55.000 0.00 0.00 40.44 4.96
303 305 0.620556 TCTTCTCACCCCAGCCAATC 59.379 55.000 0.00 0.00 0.00 2.67
364 367 1.086634 GCTGCCTTCGAGCGATTTCT 61.087 55.000 0.00 0.00 34.65 2.52
365 368 1.802880 GCTGCCTTCGAGCGATTTCTA 60.803 52.381 0.00 0.00 34.65 2.10
375 378 4.272991 TCGAGCGATTTCTACTAGAGGAAC 59.727 45.833 0.00 0.00 0.00 3.62
378 381 4.822896 AGCGATTTCTACTAGAGGAACGAT 59.177 41.667 0.00 0.00 0.00 3.73
419 422 2.167398 TAGCGTTGCTCCCACTCCAC 62.167 60.000 0.00 0.00 40.44 4.02
435 440 2.919856 ACAGAGGTGGCGCAGAGT 60.920 61.111 10.83 0.00 0.00 3.24
467 472 1.153939 CCTCGACTCGCTCAACCTG 60.154 63.158 0.00 0.00 0.00 4.00
504 509 0.179062 GATCTTCATCGCTGCCTGGT 60.179 55.000 0.00 0.00 0.00 4.00
506 511 1.078918 CTTCATCGCTGCCTGGTGA 60.079 57.895 0.00 0.00 0.00 4.02
507 512 0.674581 CTTCATCGCTGCCTGGTGAA 60.675 55.000 3.74 3.74 0.00 3.18
528 533 4.711949 CAGCGCAGGGGCTTGAGT 62.712 66.667 11.47 0.00 42.53 3.41
529 534 3.958860 AGCGCAGGGGCTTGAGTT 61.959 61.111 11.47 0.00 41.39 3.01
530 535 3.435186 GCGCAGGGGCTTGAGTTC 61.435 66.667 0.30 0.00 38.10 3.01
531 536 2.348998 CGCAGGGGCTTGAGTTCT 59.651 61.111 0.00 0.00 38.10 3.01
532 537 1.302832 CGCAGGGGCTTGAGTTCTT 60.303 57.895 0.00 0.00 38.10 2.52
533 538 1.580845 CGCAGGGGCTTGAGTTCTTG 61.581 60.000 0.00 0.00 38.10 3.02
534 539 1.246737 GCAGGGGCTTGAGTTCTTGG 61.247 60.000 0.00 0.00 36.96 3.61
535 540 0.401738 CAGGGGCTTGAGTTCTTGGA 59.598 55.000 0.00 0.00 0.00 3.53
536 541 0.402121 AGGGGCTTGAGTTCTTGGAC 59.598 55.000 0.00 0.00 0.00 4.02
537 542 0.402121 GGGGCTTGAGTTCTTGGACT 59.598 55.000 0.00 0.00 0.00 3.85
538 543 1.611936 GGGGCTTGAGTTCTTGGACTC 60.612 57.143 2.22 2.22 44.97 3.36
544 549 0.533032 GAGTTCTTGGACTCGGGAGG 59.467 60.000 0.00 0.00 36.97 4.30
545 550 0.178929 AGTTCTTGGACTCGGGAGGT 60.179 55.000 0.00 0.00 0.00 3.85
546 551 0.685660 GTTCTTGGACTCGGGAGGTT 59.314 55.000 0.00 0.00 0.00 3.50
547 552 0.685097 TTCTTGGACTCGGGAGGTTG 59.315 55.000 0.00 0.00 0.00 3.77
548 553 0.471211 TCTTGGACTCGGGAGGTTGT 60.471 55.000 0.00 0.00 0.00 3.32
549 554 0.037232 CTTGGACTCGGGAGGTTGTC 60.037 60.000 0.00 0.00 0.00 3.18
550 555 1.812686 TTGGACTCGGGAGGTTGTCG 61.813 60.000 0.00 0.00 0.00 4.35
551 556 2.572284 GACTCGGGAGGTTGTCGG 59.428 66.667 0.00 0.00 0.00 4.79
552 557 2.995574 ACTCGGGAGGTTGTCGGG 60.996 66.667 0.00 0.00 0.00 5.14
553 558 3.771160 CTCGGGAGGTTGTCGGGG 61.771 72.222 0.00 0.00 0.00 5.73
554 559 4.626402 TCGGGAGGTTGTCGGGGT 62.626 66.667 0.00 0.00 0.00 4.95
555 560 3.633116 CGGGAGGTTGTCGGGGTT 61.633 66.667 0.00 0.00 0.00 4.11
556 561 2.350134 GGGAGGTTGTCGGGGTTC 59.650 66.667 0.00 0.00 0.00 3.62
557 562 2.350134 GGAGGTTGTCGGGGTTCC 59.650 66.667 0.00 0.00 0.00 3.62
558 563 2.222013 GGAGGTTGTCGGGGTTCCT 61.222 63.158 0.00 0.00 0.00 3.36
559 564 1.003718 GAGGTTGTCGGGGTTCCTG 60.004 63.158 0.00 0.00 0.00 3.86
560 565 2.671963 GGTTGTCGGGGTTCCTGC 60.672 66.667 0.00 0.00 0.00 4.85
561 566 2.112297 GTTGTCGGGGTTCCTGCA 59.888 61.111 0.00 0.00 0.00 4.41
562 567 1.527380 GTTGTCGGGGTTCCTGCAA 60.527 57.895 0.00 0.00 0.00 4.08
563 568 1.228124 TTGTCGGGGTTCCTGCAAG 60.228 57.895 0.00 0.00 0.00 4.01
564 569 3.056328 GTCGGGGTTCCTGCAAGC 61.056 66.667 0.00 0.00 0.00 4.01
565 570 4.697756 TCGGGGTTCCTGCAAGCG 62.698 66.667 0.00 0.00 32.81 4.68
569 574 3.435186 GGTTCCTGCAAGCGGCTC 61.435 66.667 1.45 0.00 45.15 4.70
570 575 3.793144 GTTCCTGCAAGCGGCTCG 61.793 66.667 1.45 0.00 45.15 5.03
571 576 4.314440 TTCCTGCAAGCGGCTCGT 62.314 61.111 1.45 0.00 45.15 4.18
572 577 4.742201 TCCTGCAAGCGGCTCGTC 62.742 66.667 1.45 0.00 45.15 4.20
594 911 1.691163 GGGGAGAGAGGAAGAGGAAGG 60.691 61.905 0.00 0.00 0.00 3.46
596 913 1.119684 GAGAGAGGAAGAGGAAGGGC 58.880 60.000 0.00 0.00 0.00 5.19
616 933 2.496817 GCACGGCGAAGGAGAGAT 59.503 61.111 16.62 0.00 0.00 2.75
711 1028 3.414700 GTGTGCAACGCTCTCCCG 61.415 66.667 0.00 0.00 45.72 5.14
856 1175 6.855836 TCTTTAGTGCATTTTGTCATGGATC 58.144 36.000 0.00 0.00 0.00 3.36
896 1222 4.938080 TGGTAAAACGTAAAGTGACGGTA 58.062 39.130 0.00 0.00 43.33 4.02
928 1256 4.728772 TGATCTCAGAAATGTGGTGGTTT 58.271 39.130 0.00 0.00 0.00 3.27
1069 1408 3.022287 CGCGCTCTCCTCTCTCTC 58.978 66.667 5.56 0.00 0.00 3.20
1075 1414 3.623060 GCGCTCTCCTCTCTCTCTATATG 59.377 52.174 0.00 0.00 0.00 1.78
1259 1598 4.399395 CCGCCAGAGCCAGCAAGA 62.399 66.667 0.00 0.00 34.57 3.02
1260 1599 2.359107 CGCCAGAGCCAGCAAGAA 60.359 61.111 0.00 0.00 34.57 2.52
1261 1600 2.396955 CGCCAGAGCCAGCAAGAAG 61.397 63.158 0.00 0.00 34.57 2.85
1262 1601 2.698763 GCCAGAGCCAGCAAGAAGC 61.699 63.158 0.00 0.00 46.19 3.86
1293 1632 2.342648 GGACCGCGAGTTCTTGGT 59.657 61.111 8.23 0.00 37.44 3.67
2166 2517 2.220586 TTGATGCCCCACACGAGGA 61.221 57.895 0.00 0.00 0.00 3.71
2167 2518 2.184020 TTGATGCCCCACACGAGGAG 62.184 60.000 0.00 0.00 0.00 3.69
2168 2519 3.391665 GATGCCCCACACGAGGAGG 62.392 68.421 0.00 0.00 0.00 4.30
2169 2520 3.924013 ATGCCCCACACGAGGAGGA 62.924 63.158 0.00 0.00 0.00 3.71
2170 2521 4.083862 GCCCCACACGAGGAGGAC 62.084 72.222 0.00 0.00 0.00 3.85
2171 2522 3.760035 CCCCACACGAGGAGGACG 61.760 72.222 0.00 0.00 0.00 4.79
2172 2523 4.436998 CCCACACGAGGAGGACGC 62.437 72.222 0.00 0.00 0.00 5.19
2173 2524 4.436998 CCACACGAGGAGGACGCC 62.437 72.222 0.00 0.00 0.00 5.68
2174 2525 4.778415 CACACGAGGAGGACGCCG 62.778 72.222 0.00 0.00 0.00 6.46
2176 2527 4.052229 CACGAGGAGGACGCCGTT 62.052 66.667 0.00 0.00 32.58 4.44
2177 2528 4.052229 ACGAGGAGGACGCCGTTG 62.052 66.667 0.00 0.00 31.24 4.10
2178 2529 3.744719 CGAGGAGGACGCCGTTGA 61.745 66.667 0.00 0.00 0.00 3.18
2179 2530 2.893398 GAGGAGGACGCCGTTGAT 59.107 61.111 0.00 0.00 0.00 2.57
2180 2531 1.519455 GAGGAGGACGCCGTTGATG 60.519 63.158 0.00 0.00 0.00 3.07
2181 2532 3.195698 GGAGGACGCCGTTGATGC 61.196 66.667 0.00 0.00 0.00 3.91
2182 2533 3.195698 GAGGACGCCGTTGATGCC 61.196 66.667 0.00 0.00 0.00 4.40
2183 2534 4.778143 AGGACGCCGTTGATGCCC 62.778 66.667 0.00 0.00 0.00 5.36
2188 2539 3.747976 GCCGTTGATGCCCCACAC 61.748 66.667 0.00 0.00 0.00 3.82
2189 2540 3.430862 CCGTTGATGCCCCACACG 61.431 66.667 0.00 0.00 0.00 4.49
2190 2541 2.358125 CGTTGATGCCCCACACGA 60.358 61.111 0.00 0.00 0.00 4.35
2191 2542 2.390599 CGTTGATGCCCCACACGAG 61.391 63.158 0.00 0.00 0.00 4.18
2192 2543 2.040544 GTTGATGCCCCACACGAGG 61.041 63.158 0.00 0.00 0.00 4.63
2344 2724 3.889538 TGTAGATCGATCGATTTCCAGGT 59.110 43.478 29.89 7.72 34.60 4.00
2396 2776 7.852971 AACATTATTTGGCATCTTGATTTGG 57.147 32.000 0.00 0.00 0.00 3.28
2456 2836 3.570125 GGAATGCAATTTAGTAGGCCTCC 59.430 47.826 9.68 0.00 36.07 4.30
2484 2864 7.009179 TCCATGAGTTTCTTCAGTGTAGATT 57.991 36.000 0.00 0.00 0.00 2.40
2488 2868 8.602328 CATGAGTTTCTTCAGTGTAGATTGATC 58.398 37.037 0.00 0.00 0.00 2.92
2489 2869 7.099764 TGAGTTTCTTCAGTGTAGATTGATCC 58.900 38.462 0.00 0.00 0.00 3.36
2490 2870 6.410540 AGTTTCTTCAGTGTAGATTGATCCC 58.589 40.000 0.00 0.00 0.00 3.85
2491 2871 6.214412 AGTTTCTTCAGTGTAGATTGATCCCT 59.786 38.462 0.00 0.00 0.00 4.20
2492 2872 7.400339 AGTTTCTTCAGTGTAGATTGATCCCTA 59.600 37.037 0.00 0.00 0.00 3.53
2493 2873 6.968263 TCTTCAGTGTAGATTGATCCCTAG 57.032 41.667 0.00 0.00 0.00 3.02
2494 2874 6.673583 TCTTCAGTGTAGATTGATCCCTAGA 58.326 40.000 0.00 0.00 0.00 2.43
2495 2875 7.301420 TCTTCAGTGTAGATTGATCCCTAGAT 58.699 38.462 0.00 0.00 34.57 1.98
2515 2895 1.613925 TCGATCGATTTCCAGGCTAGG 59.386 52.381 15.15 0.00 0.00 3.02
2520 2900 1.269309 CGATTTCCAGGCTAGGACTCG 60.269 57.143 15.72 15.72 37.42 4.18
2603 2983 4.933400 AGAAACATTGGCATTCTGATTTGC 59.067 37.500 0.47 4.93 38.14 3.68
2723 3107 3.554934 AGAAGTGAATGTTTGTGCTCCA 58.445 40.909 0.00 0.00 0.00 3.86
2729 3113 4.629200 GTGAATGTTTGTGCTCCAAAACAA 59.371 37.500 8.05 0.00 44.36 2.83
2731 3115 4.734398 ATGTTTGTGCTCCAAAACAAGA 57.266 36.364 8.05 0.00 44.36 3.02
2758 3142 6.549364 ACCACACCTAATGATGAAAAGACAAA 59.451 34.615 0.00 0.00 0.00 2.83
2833 3217 7.857885 GGAATCAACAATGATATCTTCGAAACC 59.142 37.037 3.98 0.00 45.60 3.27
2857 3241 9.010029 ACCAACTTTTTATATGATTTCTCGTGT 57.990 29.630 0.00 0.00 0.00 4.49
3045 3591 5.572896 GGTCGTATGGAAGAATTTGCAAAAG 59.427 40.000 17.19 0.00 38.19 2.27
3069 3710 8.836268 AGTTTTGTACTATTTCATTACGGACA 57.164 30.769 0.00 0.00 34.56 4.02
3078 3719 3.260475 TCATTACGGACACCAATCCTG 57.740 47.619 0.00 0.00 36.52 3.86
3083 3724 1.264749 CGGACACCAATCCTGGAGGA 61.265 60.000 8.85 0.00 46.92 3.71
3141 3782 7.681939 TCTAATCCAAATTTGTACACCACTC 57.318 36.000 16.73 0.00 0.00 3.51
3161 3802 8.395633 ACCACTCGCTTTATATTGTGATAAAAC 58.604 33.333 0.00 0.00 32.30 2.43
3162 3803 8.394877 CCACTCGCTTTATATTGTGATAAAACA 58.605 33.333 0.00 0.00 32.30 2.83
3163 3804 9.767684 CACTCGCTTTATATTGTGATAAAACAA 57.232 29.630 0.00 0.00 43.82 2.83
3173 3814 6.702972 TTGTGATAAAACAATGGCGATTTG 57.297 33.333 0.00 0.00 35.16 2.32
3174 3815 5.777802 TGTGATAAAACAATGGCGATTTGT 58.222 33.333 0.00 0.00 38.91 2.83
3175 3816 6.219473 TGTGATAAAACAATGGCGATTTGTT 58.781 32.000 7.06 7.06 46.38 2.83
3176 3817 7.371159 TGTGATAAAACAATGGCGATTTGTTA 58.629 30.769 11.70 2.12 44.32 2.41
3177 3818 8.031864 TGTGATAAAACAATGGCGATTTGTTAT 58.968 29.630 11.70 5.97 44.32 1.89
3178 3819 8.868916 GTGATAAAACAATGGCGATTTGTTATT 58.131 29.630 11.70 10.67 44.32 1.40
3179 3820 8.867935 TGATAAAACAATGGCGATTTGTTATTG 58.132 29.630 11.70 0.00 44.32 1.90
3180 3821 5.529014 AAACAATGGCGATTTGTTATTGC 57.471 34.783 11.70 0.00 44.32 3.56
3181 3822 4.185467 ACAATGGCGATTTGTTATTGCA 57.815 36.364 0.00 0.00 33.64 4.08
3182 3823 4.175516 ACAATGGCGATTTGTTATTGCAG 58.824 39.130 0.00 0.00 33.64 4.41
3183 3824 4.175516 CAATGGCGATTTGTTATTGCAGT 58.824 39.130 0.00 0.00 0.00 4.40
3184 3825 5.105957 ACAATGGCGATTTGTTATTGCAGTA 60.106 36.000 0.00 0.00 33.64 2.74
3185 3826 4.614555 TGGCGATTTGTTATTGCAGTAG 57.385 40.909 0.00 0.00 0.00 2.57
3186 3827 3.376859 TGGCGATTTGTTATTGCAGTAGG 59.623 43.478 0.00 0.00 0.00 3.18
3187 3828 3.377172 GGCGATTTGTTATTGCAGTAGGT 59.623 43.478 0.00 0.00 0.00 3.08
3188 3829 4.495844 GGCGATTTGTTATTGCAGTAGGTC 60.496 45.833 0.00 0.00 0.00 3.85
3189 3830 4.094294 GCGATTTGTTATTGCAGTAGGTCA 59.906 41.667 0.00 0.00 0.00 4.02
3190 3831 5.220854 GCGATTTGTTATTGCAGTAGGTCAT 60.221 40.000 0.00 0.00 0.00 3.06
3191 3832 6.018262 GCGATTTGTTATTGCAGTAGGTCATA 60.018 38.462 0.00 0.00 0.00 2.15
3192 3833 7.307989 GCGATTTGTTATTGCAGTAGGTCATAT 60.308 37.037 0.00 0.00 0.00 1.78
3193 3834 8.223769 CGATTTGTTATTGCAGTAGGTCATATC 58.776 37.037 0.00 0.35 0.00 1.63
3194 3835 7.801716 TTTGTTATTGCAGTAGGTCATATCC 57.198 36.000 0.00 0.00 0.00 2.59
3195 3836 5.865085 TGTTATTGCAGTAGGTCATATCCC 58.135 41.667 0.00 0.00 0.00 3.85
3196 3837 5.221843 TGTTATTGCAGTAGGTCATATCCCC 60.222 44.000 0.00 0.00 0.00 4.81
3197 3838 2.487746 TGCAGTAGGTCATATCCCCA 57.512 50.000 0.00 0.00 0.00 4.96
3198 3839 2.047061 TGCAGTAGGTCATATCCCCAC 58.953 52.381 0.00 0.00 0.00 4.61
3199 3840 2.330216 GCAGTAGGTCATATCCCCACT 58.670 52.381 0.00 0.00 0.00 4.00
3200 3841 3.116900 TGCAGTAGGTCATATCCCCACTA 60.117 47.826 0.00 0.00 0.00 2.74
3201 3842 4.097418 GCAGTAGGTCATATCCCCACTAT 58.903 47.826 0.00 0.00 0.00 2.12
3202 3843 4.081420 GCAGTAGGTCATATCCCCACTATG 60.081 50.000 0.00 0.00 0.00 2.23
3203 3844 5.087323 CAGTAGGTCATATCCCCACTATGT 58.913 45.833 0.00 0.00 0.00 2.29
3204 3845 6.253758 CAGTAGGTCATATCCCCACTATGTA 58.746 44.000 0.00 0.00 0.00 2.29
3205 3846 6.378564 CAGTAGGTCATATCCCCACTATGTAG 59.621 46.154 0.00 0.00 0.00 2.74
3206 3847 5.616975 AGGTCATATCCCCACTATGTAGA 57.383 43.478 0.00 0.00 0.00 2.59
3207 3848 5.584913 AGGTCATATCCCCACTATGTAGAG 58.415 45.833 0.00 0.00 0.00 2.43
3208 3849 5.076598 AGGTCATATCCCCACTATGTAGAGT 59.923 44.000 0.00 0.00 0.00 3.24
3209 3850 5.186021 GGTCATATCCCCACTATGTAGAGTG 59.814 48.000 0.00 0.00 45.43 3.51
3224 3865 2.674796 GAGTGGACTCTATGCGGTTT 57.325 50.000 0.00 0.00 39.81 3.27
3225 3866 2.973945 GAGTGGACTCTATGCGGTTTT 58.026 47.619 0.00 0.00 39.81 2.43
3226 3867 4.119442 GAGTGGACTCTATGCGGTTTTA 57.881 45.455 0.00 0.00 39.81 1.52
3227 3868 4.501071 GAGTGGACTCTATGCGGTTTTAA 58.499 43.478 0.00 0.00 39.81 1.52
3228 3869 5.099042 AGTGGACTCTATGCGGTTTTAAT 57.901 39.130 0.00 0.00 0.00 1.40
3229 3870 6.229936 AGTGGACTCTATGCGGTTTTAATA 57.770 37.500 0.00 0.00 0.00 0.98
3230 3871 6.646267 AGTGGACTCTATGCGGTTTTAATAA 58.354 36.000 0.00 0.00 0.00 1.40
3231 3872 7.107542 AGTGGACTCTATGCGGTTTTAATAAA 58.892 34.615 0.00 0.00 0.00 1.40
3232 3873 7.773690 AGTGGACTCTATGCGGTTTTAATAAAT 59.226 33.333 0.00 0.00 0.00 1.40
3233 3874 9.048446 GTGGACTCTATGCGGTTTTAATAAATA 57.952 33.333 0.00 0.00 0.00 1.40
3234 3875 9.048446 TGGACTCTATGCGGTTTTAATAAATAC 57.952 33.333 0.00 0.00 0.00 1.89
3235 3876 8.501580 GGACTCTATGCGGTTTTAATAAATACC 58.498 37.037 6.89 6.89 0.00 2.73
3236 3877 9.269453 GACTCTATGCGGTTTTAATAAATACCT 57.731 33.333 12.05 1.88 0.00 3.08
3237 3878 9.623000 ACTCTATGCGGTTTTAATAAATACCTT 57.377 29.630 12.05 4.16 0.00 3.50
3267 3908 9.947669 TTAGAGATGTACTAGCTTTTATCGTTC 57.052 33.333 0.00 0.00 0.00 3.95
3268 3909 8.228035 AGAGATGTACTAGCTTTTATCGTTCT 57.772 34.615 0.00 0.00 0.00 3.01
3269 3910 8.132362 AGAGATGTACTAGCTTTTATCGTTCTG 58.868 37.037 0.00 0.00 0.00 3.02
3270 3911 7.773149 AGATGTACTAGCTTTTATCGTTCTGT 58.227 34.615 0.00 0.00 0.00 3.41
3271 3912 8.251721 AGATGTACTAGCTTTTATCGTTCTGTT 58.748 33.333 0.00 0.00 0.00 3.16
3272 3913 8.773404 ATGTACTAGCTTTTATCGTTCTGTTT 57.227 30.769 0.00 0.00 0.00 2.83
3273 3914 9.865321 ATGTACTAGCTTTTATCGTTCTGTTTA 57.135 29.630 0.00 0.00 0.00 2.01
3274 3915 9.865321 TGTACTAGCTTTTATCGTTCTGTTTAT 57.135 29.630 0.00 0.00 0.00 1.40
3276 3917 8.997621 ACTAGCTTTTATCGTTCTGTTTATCA 57.002 30.769 0.00 0.00 0.00 2.15
3277 3918 9.088512 ACTAGCTTTTATCGTTCTGTTTATCAG 57.911 33.333 0.00 0.00 44.85 2.90
3278 3919 6.776094 AGCTTTTATCGTTCTGTTTATCAGC 58.224 36.000 0.00 0.00 43.32 4.26
3279 3920 6.371548 AGCTTTTATCGTTCTGTTTATCAGCA 59.628 34.615 0.00 0.00 43.32 4.41
3280 3921 7.066284 AGCTTTTATCGTTCTGTTTATCAGCAT 59.934 33.333 0.00 0.00 43.32 3.79
3281 3922 7.164826 GCTTTTATCGTTCTGTTTATCAGCATG 59.835 37.037 0.00 0.00 43.32 4.06
3282 3923 7.609760 TTTATCGTTCTGTTTATCAGCATGT 57.390 32.000 0.00 0.00 43.32 3.21
3283 3924 8.710835 TTTATCGTTCTGTTTATCAGCATGTA 57.289 30.769 0.00 0.00 43.32 2.29
3284 3925 8.887036 TTATCGTTCTGTTTATCAGCATGTAT 57.113 30.769 0.00 0.00 43.32 2.29
3285 3926 6.828502 TCGTTCTGTTTATCAGCATGTATC 57.171 37.500 0.00 0.00 43.32 2.24
3286 3927 6.337356 TCGTTCTGTTTATCAGCATGTATCA 58.663 36.000 0.00 0.00 43.32 2.15
3287 3928 6.986231 TCGTTCTGTTTATCAGCATGTATCAT 59.014 34.615 0.00 0.00 43.32 2.45
3288 3929 7.042523 TCGTTCTGTTTATCAGCATGTATCATG 60.043 37.037 5.49 5.49 43.32 3.07
3289 3930 6.549912 TCTGTTTATCAGCATGTATCATGC 57.450 37.500 22.09 22.09 43.32 4.06
3290 3931 6.056884 TCTGTTTATCAGCATGTATCATGCA 58.943 36.000 28.18 14.65 46.77 3.96
3291 3932 6.713450 TCTGTTTATCAGCATGTATCATGCAT 59.287 34.615 28.18 19.15 46.77 3.96
3292 3933 6.674066 TGTTTATCAGCATGTATCATGCATG 58.326 36.000 28.18 21.07 46.77 4.06
3293 3934 5.890424 TTATCAGCATGTATCATGCATGG 57.110 39.130 28.18 19.51 46.77 3.66
3297 3938 3.720949 GCATGTATCATGCATGGTTGT 57.279 42.857 25.97 12.38 44.00 3.32
3298 3939 4.834357 GCATGTATCATGCATGGTTGTA 57.166 40.909 25.97 7.18 44.00 2.41
3299 3940 5.185668 GCATGTATCATGCATGGTTGTAA 57.814 39.130 25.97 6.40 44.00 2.41
3300 3941 5.775686 GCATGTATCATGCATGGTTGTAAT 58.224 37.500 25.97 13.39 44.00 1.89
3301 3942 6.912082 GCATGTATCATGCATGGTTGTAATA 58.088 36.000 25.97 12.40 44.00 0.98
3302 3943 7.369607 GCATGTATCATGCATGGTTGTAATAA 58.630 34.615 25.97 4.08 44.00 1.40
3303 3944 7.866898 GCATGTATCATGCATGGTTGTAATAAA 59.133 33.333 25.97 10.90 44.00 1.40
3304 3945 9.917129 CATGTATCATGCATGGTTGTAATAAAT 57.083 29.630 25.97 12.58 39.82 1.40
3305 3946 9.917129 ATGTATCATGCATGGTTGTAATAAATG 57.083 29.630 25.97 0.00 0.00 2.32
3306 3947 8.911965 TGTATCATGCATGGTTGTAATAAATGT 58.088 29.630 25.97 0.00 0.00 2.71
3309 3950 8.518430 TCATGCATGGTTGTAATAAATGTACT 57.482 30.769 25.97 0.00 0.00 2.73
3310 3951 8.965819 TCATGCATGGTTGTAATAAATGTACTT 58.034 29.630 25.97 0.00 0.00 2.24
3311 3952 9.236691 CATGCATGGTTGTAATAAATGTACTTC 57.763 33.333 19.40 0.00 0.00 3.01
3312 3953 8.574251 TGCATGGTTGTAATAAATGTACTTCT 57.426 30.769 0.00 0.00 0.00 2.85
3313 3954 9.019656 TGCATGGTTGTAATAAATGTACTTCTT 57.980 29.630 0.00 0.00 0.00 2.52
3314 3955 9.855021 GCATGGTTGTAATAAATGTACTTCTTT 57.145 29.630 0.00 0.00 0.00 2.52
3316 3957 9.855021 ATGGTTGTAATAAATGTACTTCTTTGC 57.145 29.630 0.00 0.00 0.00 3.68
3317 3958 8.301002 TGGTTGTAATAAATGTACTTCTTTGCC 58.699 33.333 0.00 0.00 0.00 4.52
3318 3959 8.301002 GGTTGTAATAAATGTACTTCTTTGCCA 58.699 33.333 0.00 0.00 0.00 4.92
3319 3960 9.855021 GTTGTAATAAATGTACTTCTTTGCCAT 57.145 29.630 0.00 0.00 0.00 4.40
3321 3962 9.461312 TGTAATAAATGTACTTCTTTGCCATCT 57.539 29.630 0.00 0.00 0.00 2.90
3324 3965 6.899393 AAATGTACTTCTTTGCCATCTTGA 57.101 33.333 0.00 0.00 0.00 3.02
3325 3966 6.899393 AATGTACTTCTTTGCCATCTTGAA 57.101 33.333 0.00 0.00 0.00 2.69
3326 3967 5.689383 TGTACTTCTTTGCCATCTTGAAC 57.311 39.130 0.00 0.00 0.00 3.18
3327 3968 5.376625 TGTACTTCTTTGCCATCTTGAACT 58.623 37.500 0.00 0.00 0.00 3.01
3328 3969 5.827797 TGTACTTCTTTGCCATCTTGAACTT 59.172 36.000 0.00 0.00 0.00 2.66
3329 3970 5.859205 ACTTCTTTGCCATCTTGAACTTT 57.141 34.783 0.00 0.00 0.00 2.66
3330 3971 6.225981 ACTTCTTTGCCATCTTGAACTTTT 57.774 33.333 0.00 0.00 0.00 2.27
3331 3972 7.346751 ACTTCTTTGCCATCTTGAACTTTTA 57.653 32.000 0.00 0.00 0.00 1.52
3332 3973 7.955918 ACTTCTTTGCCATCTTGAACTTTTAT 58.044 30.769 0.00 0.00 0.00 1.40
3333 3974 9.077885 ACTTCTTTGCCATCTTGAACTTTTATA 57.922 29.630 0.00 0.00 0.00 0.98
3370 4011 1.776580 CGCGCTTTGCTACGTTGTA 59.223 52.632 5.56 0.00 43.27 2.41
3555 4213 9.603921 ATGAATTTCCATAATTTTGTGGCTTAG 57.396 29.630 1.49 0.00 39.09 2.18
3580 4238 7.773224 AGTATTGTGGATGTCGATATTTTTGGA 59.227 33.333 0.00 0.00 0.00 3.53
3655 4317 7.239563 ACCCCTTTTATTTTGGAATTGAAGGAT 59.760 33.333 0.00 0.00 37.81 3.24
3656 4318 8.767436 CCCCTTTTATTTTGGAATTGAAGGATA 58.233 33.333 0.00 0.00 37.81 2.59
3665 4336 3.244561 GGAATTGAAGGATAGGCGGATGA 60.245 47.826 0.00 0.00 0.00 2.92
3749 4422 9.859427 CTTTCATGGTGTGATTTTATGTTATGT 57.141 29.630 0.00 0.00 36.54 2.29
3775 4448 5.391312 AATCAACTCATACTTTTGTGGGC 57.609 39.130 0.00 0.00 0.00 5.36
3776 4449 2.811431 TCAACTCATACTTTTGTGGGCG 59.189 45.455 0.00 0.00 0.00 6.13
3806 4479 2.097954 CGTCGGTGGCTACATGTACTAA 59.902 50.000 0.08 0.00 0.00 2.24
3847 4520 1.000274 ACATGGTGGCGCTTCTTTTTC 60.000 47.619 7.64 0.00 0.00 2.29
3852 4525 2.152016 GTGGCGCTTCTTTTTCCTAGT 58.848 47.619 7.64 0.00 0.00 2.57
3891 4564 4.881850 CGGGGTTGATATGTTTTTCTAGCT 59.118 41.667 0.00 0.00 0.00 3.32
3892 4565 5.357032 CGGGGTTGATATGTTTTTCTAGCTT 59.643 40.000 0.00 0.00 0.00 3.74
3936 4610 1.540267 TCGTTGGCCCGATCAAAATT 58.460 45.000 0.00 0.00 30.63 1.82
4097 4781 5.930135 ACTGAAGACCTCAATTAACTGTGT 58.070 37.500 0.00 0.00 32.17 3.72
4102 4786 4.102524 AGACCTCAATTAACTGTGTGGACA 59.897 41.667 9.52 0.00 33.54 4.02
4107 4791 7.669722 ACCTCAATTAACTGTGTGGACATAAAT 59.330 33.333 9.52 0.00 33.54 1.40
4135 4820 7.768807 AGGAAGCATAGTGTATACTAGAAGG 57.231 40.000 4.17 0.00 42.36 3.46
4136 4821 6.722129 AGGAAGCATAGTGTATACTAGAAGGG 59.278 42.308 4.17 0.00 42.36 3.95
4137 4822 6.494146 GGAAGCATAGTGTATACTAGAAGGGT 59.506 42.308 4.17 0.00 42.36 4.34
4138 4823 7.015389 GGAAGCATAGTGTATACTAGAAGGGTT 59.985 40.741 4.17 6.54 42.36 4.11
4139 4824 9.075678 GAAGCATAGTGTATACTAGAAGGGTTA 57.924 37.037 4.17 0.00 42.36 2.85
4140 4825 8.638629 AGCATAGTGTATACTAGAAGGGTTAG 57.361 38.462 4.17 0.00 42.36 2.34
4141 4826 7.670559 AGCATAGTGTATACTAGAAGGGTTAGG 59.329 40.741 4.17 0.00 42.36 2.69
4142 4827 7.577236 GCATAGTGTATACTAGAAGGGTTAGGC 60.577 44.444 4.17 0.00 42.36 3.93
4143 4828 5.774179 AGTGTATACTAGAAGGGTTAGGCA 58.226 41.667 4.17 0.00 34.74 4.75
4144 4829 5.597594 AGTGTATACTAGAAGGGTTAGGCAC 59.402 44.000 4.17 0.00 34.74 5.01
4145 4830 4.581824 TGTATACTAGAAGGGTTAGGCACG 59.418 45.833 4.17 0.00 0.00 5.34
4146 4831 0.535797 ACTAGAAGGGTTAGGCACGC 59.464 55.000 0.00 0.00 38.67 5.34
4150 4835 4.397348 AGGGTTAGGCACGCTTTG 57.603 55.556 0.00 0.00 46.40 2.77
4151 4836 1.971695 AGGGTTAGGCACGCTTTGC 60.972 57.895 0.00 0.00 46.40 3.68
4163 4848 4.101790 CTTTGCGGCGCCGTTGAT 62.102 61.111 45.02 0.00 42.09 2.57
4164 4849 4.397090 TTTGCGGCGCCGTTGATG 62.397 61.111 45.02 21.18 42.09 3.07
4168 4853 3.722295 CGGCGCCGTTGATGTTGT 61.722 61.111 39.71 0.00 34.35 3.32
4169 4854 2.642700 GGCGCCGTTGATGTTGTT 59.357 55.556 12.58 0.00 0.00 2.83
4170 4855 1.729131 GGCGCCGTTGATGTTGTTG 60.729 57.895 12.58 0.00 0.00 3.33
4171 4856 1.281353 GCGCCGTTGATGTTGTTGA 59.719 52.632 0.00 0.00 0.00 3.18
4172 4857 0.725784 GCGCCGTTGATGTTGTTGAG 60.726 55.000 0.00 0.00 0.00 3.02
4173 4858 0.865111 CGCCGTTGATGTTGTTGAGA 59.135 50.000 0.00 0.00 0.00 3.27
4174 4859 1.464608 CGCCGTTGATGTTGTTGAGAT 59.535 47.619 0.00 0.00 0.00 2.75
4175 4860 2.095768 CGCCGTTGATGTTGTTGAGATT 60.096 45.455 0.00 0.00 0.00 2.40
4176 4861 3.492313 GCCGTTGATGTTGTTGAGATTC 58.508 45.455 0.00 0.00 0.00 2.52
4177 4862 3.189287 GCCGTTGATGTTGTTGAGATTCT 59.811 43.478 0.00 0.00 0.00 2.40
4178 4863 4.320494 GCCGTTGATGTTGTTGAGATTCTT 60.320 41.667 0.00 0.00 0.00 2.52
4179 4864 5.106712 GCCGTTGATGTTGTTGAGATTCTTA 60.107 40.000 0.00 0.00 0.00 2.10
4180 4865 6.567701 GCCGTTGATGTTGTTGAGATTCTTAA 60.568 38.462 0.00 0.00 0.00 1.85
4181 4866 7.359595 CCGTTGATGTTGTTGAGATTCTTAAA 58.640 34.615 0.00 0.00 0.00 1.52
4182 4867 8.023128 CCGTTGATGTTGTTGAGATTCTTAAAT 58.977 33.333 0.00 0.00 0.00 1.40
4183 4868 9.398170 CGTTGATGTTGTTGAGATTCTTAAATT 57.602 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.298619 TCCCCTCTACCTCCTAGTCA 57.701 55.000 0.00 0.00 0.00 3.41
26 27 2.225167 CCATCCCCTCTACCTCCTAGTC 60.225 59.091 0.00 0.00 0.00 2.59
28 29 2.074579 TCCATCCCCTCTACCTCCTAG 58.925 57.143 0.00 0.00 0.00 3.02
47 48 6.756074 TCACAAATGTTCCAAAACTCATTGTC 59.244 34.615 0.00 0.00 35.71 3.18
56 57 4.412796 TGGCATCACAAATGTTCCAAAA 57.587 36.364 0.00 0.00 0.00 2.44
64 65 7.225145 CACCCTTATAAAATGGCATCACAAATG 59.775 37.037 0.00 0.00 0.00 2.32
65 66 7.274447 CACCCTTATAAAATGGCATCACAAAT 58.726 34.615 0.00 0.00 0.00 2.32
129 131 3.388841 GGTGACGGTGTCCTGGAT 58.611 61.111 0.00 0.00 0.00 3.41
155 157 3.306849 CCATCAGATCCCAGATAGTGCAG 60.307 52.174 0.00 0.00 0.00 4.41
177 179 1.389555 CGCTGAATTTTAGGGTCCCC 58.610 55.000 3.51 0.00 0.00 4.81
185 187 2.159707 GCAGACGAAGCGCTGAATTTTA 60.160 45.455 12.58 0.00 34.71 1.52
200 202 1.056103 CGTTGAGAGACTTGCAGACG 58.944 55.000 0.00 0.00 0.00 4.18
227 229 3.061260 GACGTCGGGTAGGTGGAGC 62.061 68.421 0.00 0.00 0.00 4.70
280 282 1.216710 GCTGGGGTGAGAAGACTCG 59.783 63.158 0.00 0.00 45.25 4.18
285 287 0.394899 GGATTGGCTGGGGTGAGAAG 60.395 60.000 0.00 0.00 0.00 2.85
313 316 2.280797 GTGTCAGGCGGCTTGTGA 60.281 61.111 9.66 1.02 0.00 3.58
319 322 2.697761 TAGACTCGTGTCAGGCGGC 61.698 63.158 18.92 0.00 45.20 6.53
364 367 7.337167 AGTCTTTCACTATCGTTCCTCTAGTA 58.663 38.462 0.00 0.00 31.37 1.82
365 368 6.181908 AGTCTTTCACTATCGTTCCTCTAGT 58.818 40.000 0.00 0.00 31.37 2.57
375 378 4.926238 GCCCATCATAGTCTTTCACTATCG 59.074 45.833 0.00 0.00 43.91 2.92
378 381 3.704566 ACGCCCATCATAGTCTTTCACTA 59.295 43.478 0.00 0.00 42.09 2.74
383 386 2.545952 CGCTACGCCCATCATAGTCTTT 60.546 50.000 0.00 0.00 0.00 2.52
389 392 0.878523 GCAACGCTACGCCCATCATA 60.879 55.000 0.00 0.00 0.00 2.15
419 422 2.031516 CAACTCTGCGCCACCTCTG 61.032 63.158 4.18 0.00 0.00 3.35
432 437 1.446966 GGTCGAGCTCCAGCAACTC 60.447 63.158 8.47 0.00 45.16 3.01
435 440 2.973899 GAGGTCGAGCTCCAGCAA 59.026 61.111 29.89 0.00 45.16 3.91
504 509 4.020617 CCCCTGCGCTGGACTTCA 62.021 66.667 32.43 0.00 0.00 3.02
513 518 3.435186 GAACTCAAGCCCCTGCGC 61.435 66.667 0.00 0.00 44.33 6.09
515 520 1.246737 CCAAGAACTCAAGCCCCTGC 61.247 60.000 0.00 0.00 37.95 4.85
524 529 1.257743 CTCCCGAGTCCAAGAACTCA 58.742 55.000 5.04 0.00 44.88 3.41
526 531 0.178929 ACCTCCCGAGTCCAAGAACT 60.179 55.000 0.00 0.00 0.00 3.01
527 532 0.685660 AACCTCCCGAGTCCAAGAAC 59.314 55.000 0.00 0.00 0.00 3.01
528 533 0.685097 CAACCTCCCGAGTCCAAGAA 59.315 55.000 0.00 0.00 0.00 2.52
529 534 0.471211 ACAACCTCCCGAGTCCAAGA 60.471 55.000 0.00 0.00 0.00 3.02
530 535 0.037232 GACAACCTCCCGAGTCCAAG 60.037 60.000 0.00 0.00 0.00 3.61
531 536 1.812686 CGACAACCTCCCGAGTCCAA 61.813 60.000 0.00 0.00 0.00 3.53
532 537 2.273179 CGACAACCTCCCGAGTCCA 61.273 63.158 0.00 0.00 0.00 4.02
533 538 2.572284 CGACAACCTCCCGAGTCC 59.428 66.667 0.00 0.00 0.00 3.85
534 539 2.572284 CCGACAACCTCCCGAGTC 59.428 66.667 0.00 0.00 0.00 3.36
535 540 2.995574 CCCGACAACCTCCCGAGT 60.996 66.667 0.00 0.00 0.00 4.18
536 541 3.771160 CCCCGACAACCTCCCGAG 61.771 72.222 0.00 0.00 0.00 4.63
537 542 4.626402 ACCCCGACAACCTCCCGA 62.626 66.667 0.00 0.00 0.00 5.14
538 543 3.600898 GAACCCCGACAACCTCCCG 62.601 68.421 0.00 0.00 0.00 5.14
539 544 2.350134 GAACCCCGACAACCTCCC 59.650 66.667 0.00 0.00 0.00 4.30
540 545 2.222013 AGGAACCCCGACAACCTCC 61.222 63.158 0.00 0.00 37.58 4.30
541 546 1.003718 CAGGAACCCCGACAACCTC 60.004 63.158 0.00 0.00 37.58 3.85
542 547 3.157680 CAGGAACCCCGACAACCT 58.842 61.111 0.00 0.00 37.58 3.50
543 548 2.671963 GCAGGAACCCCGACAACC 60.672 66.667 0.00 0.00 37.58 3.77
544 549 1.515521 CTTGCAGGAACCCCGACAAC 61.516 60.000 0.00 0.00 37.58 3.32
545 550 1.228124 CTTGCAGGAACCCCGACAA 60.228 57.895 0.00 0.00 37.58 3.18
546 551 2.429930 CTTGCAGGAACCCCGACA 59.570 61.111 0.00 0.00 37.58 4.35
547 552 3.056328 GCTTGCAGGAACCCCGAC 61.056 66.667 0.00 0.00 37.58 4.79
548 553 4.697756 CGCTTGCAGGAACCCCGA 62.698 66.667 0.00 0.00 37.58 5.14
552 557 3.435186 GAGCCGCTTGCAGGAACC 61.435 66.667 0.00 0.00 44.83 3.62
553 558 3.793144 CGAGCCGCTTGCAGGAAC 61.793 66.667 0.00 0.00 44.83 3.62
554 559 4.314440 ACGAGCCGCTTGCAGGAA 62.314 61.111 7.60 0.00 44.83 3.36
555 560 4.742201 GACGAGCCGCTTGCAGGA 62.742 66.667 7.60 0.00 44.83 3.86
565 570 4.816984 TCTCTCCCCCGACGAGCC 62.817 72.222 0.00 0.00 0.00 4.70
566 571 3.213402 CTCTCTCCCCCGACGAGC 61.213 72.222 0.00 0.00 0.00 5.03
567 572 2.517402 CCTCTCTCCCCCGACGAG 60.517 72.222 0.00 0.00 0.00 4.18
568 573 2.553765 CTTCCTCTCTCCCCCGACGA 62.554 65.000 0.00 0.00 0.00 4.20
569 574 2.044252 TTCCTCTCTCCCCCGACG 60.044 66.667 0.00 0.00 0.00 5.12
570 575 0.753848 CTCTTCCTCTCTCCCCCGAC 60.754 65.000 0.00 0.00 0.00 4.79
571 576 1.615814 CTCTTCCTCTCTCCCCCGA 59.384 63.158 0.00 0.00 0.00 5.14
572 577 1.456705 CCTCTTCCTCTCTCCCCCG 60.457 68.421 0.00 0.00 0.00 5.73
573 578 0.340208 TTCCTCTTCCTCTCTCCCCC 59.660 60.000 0.00 0.00 0.00 5.40
574 579 1.691163 CCTTCCTCTTCCTCTCTCCCC 60.691 61.905 0.00 0.00 0.00 4.81
575 580 1.691163 CCCTTCCTCTTCCTCTCTCCC 60.691 61.905 0.00 0.00 0.00 4.30
604 921 1.135915 TGCTCTTCATCTCTCCTTCGC 59.864 52.381 0.00 0.00 0.00 4.70
606 923 4.432712 GTCTTGCTCTTCATCTCTCCTTC 58.567 47.826 0.00 0.00 0.00 3.46
616 933 0.319900 GCGTCTGGTCTTGCTCTTCA 60.320 55.000 0.00 0.00 0.00 3.02
711 1028 0.768609 CCTTACCCCATCCTCCTCCC 60.769 65.000 0.00 0.00 0.00 4.30
725 1042 2.120312 CCCTCTCCCTTTCCTCCTTAC 58.880 57.143 0.00 0.00 0.00 2.34
795 1113 3.132160 TCGACGTGGCAAAGAAATAACA 58.868 40.909 0.00 0.00 0.00 2.41
798 1116 4.434989 CGAATTCGACGTGGCAAAGAAATA 60.435 41.667 23.29 0.00 43.02 1.40
856 1175 8.760569 GTTTTACCAATAAATTTCACAGTGGTG 58.239 33.333 17.62 0.00 38.34 4.17
873 1199 4.187694 ACCGTCACTTTACGTTTTACCAA 58.812 39.130 0.00 0.00 41.27 3.67
875 1201 6.466308 AATACCGTCACTTTACGTTTTACC 57.534 37.500 0.00 0.00 41.27 2.85
876 1202 7.850492 ACAAAATACCGTCACTTTACGTTTTAC 59.150 33.333 0.00 0.00 41.27 2.01
891 1217 8.786826 TTCTGAGATCATTAACAAAATACCGT 57.213 30.769 0.00 0.00 0.00 4.83
896 1222 9.865321 CCACATTTCTGAGATCATTAACAAAAT 57.135 29.630 0.00 0.00 0.00 1.82
910 1238 4.362279 CACAAAACCACCACATTTCTGAG 58.638 43.478 0.00 0.00 0.00 3.35
1069 1408 7.683578 TGGATGATTCTTTGAGGGACATATAG 58.316 38.462 0.00 0.00 0.00 1.31
1075 1414 4.163078 TCTCTGGATGATTCTTTGAGGGAC 59.837 45.833 0.00 0.00 0.00 4.46
1254 1593 4.143466 GCTTCTTGCGCTTCTTGC 57.857 55.556 9.73 4.11 38.57 4.01
1293 1632 2.748647 TCGTCGACTCCATGCCGA 60.749 61.111 14.70 0.00 0.00 5.54
1910 2261 2.577059 GAACCTGATGACCGGCGA 59.423 61.111 9.30 0.00 0.00 5.54
1911 2262 2.629050 ATCGAACCTGATGACCGGCG 62.629 60.000 0.00 0.00 0.00 6.46
2166 2517 4.778143 GGGCATCAACGGCGTCCT 62.778 66.667 15.17 0.00 0.00 3.85
2171 2522 3.747976 GTGTGGGGCATCAACGGC 61.748 66.667 0.00 0.00 0.00 5.68
2172 2523 3.430862 CGTGTGGGGCATCAACGG 61.431 66.667 0.00 0.00 0.00 4.44
2173 2524 2.358125 TCGTGTGGGGCATCAACG 60.358 61.111 0.00 0.00 0.00 4.10
2174 2525 2.040544 CCTCGTGTGGGGCATCAAC 61.041 63.158 0.00 0.00 0.00 3.18
2175 2526 2.184020 CTCCTCGTGTGGGGCATCAA 62.184 60.000 0.00 0.00 0.00 2.57
2176 2527 2.606213 TCCTCGTGTGGGGCATCA 60.606 61.111 0.00 0.00 0.00 3.07
2177 2528 2.187946 CTCCTCGTGTGGGGCATC 59.812 66.667 0.00 0.00 0.00 3.91
2178 2529 3.402681 CCTCCTCGTGTGGGGCAT 61.403 66.667 0.00 0.00 0.00 4.40
2189 2540 4.162690 ATCAACGGCGCCCTCCTC 62.163 66.667 23.46 0.00 0.00 3.71
2190 2541 4.473520 CATCAACGGCGCCCTCCT 62.474 66.667 23.46 0.00 0.00 3.69
2344 2724 2.483877 GTCGTGCCAAGAATCAATCACA 59.516 45.455 0.00 0.00 0.00 3.58
2456 2836 5.243981 ACACTGAAGAAACTCATGGAGATG 58.756 41.667 0.00 0.00 33.32 2.90
2484 2864 4.399618 GGAAATCGATCGATCTAGGGATCA 59.600 45.833 29.48 0.00 46.30 2.92
2488 2868 3.119316 CCTGGAAATCGATCGATCTAGGG 60.119 52.174 29.61 23.07 33.08 3.53
2489 2869 3.674682 GCCTGGAAATCGATCGATCTAGG 60.675 52.174 31.45 31.45 33.08 3.02
2490 2870 3.192422 AGCCTGGAAATCGATCGATCTAG 59.808 47.826 29.48 23.80 33.08 2.43
2491 2871 3.157881 AGCCTGGAAATCGATCGATCTA 58.842 45.455 29.48 16.54 33.08 1.98
2492 2872 1.967066 AGCCTGGAAATCGATCGATCT 59.033 47.619 29.48 17.99 33.08 2.75
2493 2873 2.447244 AGCCTGGAAATCGATCGATC 57.553 50.000 29.48 19.27 33.08 3.69
2494 2874 2.232452 CCTAGCCTGGAAATCGATCGAT 59.768 50.000 24.60 24.60 36.23 3.59
2495 2875 1.613925 CCTAGCCTGGAAATCGATCGA 59.386 52.381 21.86 21.86 0.00 3.59
2496 2876 1.613925 TCCTAGCCTGGAAATCGATCG 59.386 52.381 9.36 9.36 32.39 3.69
2497 2877 2.630580 AGTCCTAGCCTGGAAATCGATC 59.369 50.000 0.00 0.00 37.93 3.69
2498 2878 2.630580 GAGTCCTAGCCTGGAAATCGAT 59.369 50.000 0.00 0.00 37.93 3.59
2499 2879 2.032620 GAGTCCTAGCCTGGAAATCGA 58.967 52.381 0.00 0.00 37.93 3.59
2515 2895 5.048507 AGTAACTGAAAACAGAACCGAGTC 58.951 41.667 0.00 0.00 0.00 3.36
2520 2900 8.883954 AGTAAGTAGTAACTGAAAACAGAACC 57.116 34.615 0.00 0.00 35.62 3.62
2547 2927 4.661222 TCCAAGGATCAAACATGCTTACA 58.339 39.130 0.00 0.00 0.00 2.41
2603 2983 5.880341 AGTCTTGTCCGAAAACAAAGAAAG 58.120 37.500 0.00 0.00 38.60 2.62
2698 3082 3.316308 AGCACAAACATTCACTTCTCCAC 59.684 43.478 0.00 0.00 0.00 4.02
2723 3107 5.690865 TCATTAGGTGTGGTCTCTTGTTTT 58.309 37.500 0.00 0.00 0.00 2.43
2729 3113 5.762179 TTTCATCATTAGGTGTGGTCTCT 57.238 39.130 0.00 0.00 0.00 3.10
2731 3115 5.940470 GTCTTTTCATCATTAGGTGTGGTCT 59.060 40.000 0.00 0.00 0.00 3.85
2795 3179 9.699410 ATCATTGTTGATTCCAAAGGTAGATAA 57.301 29.630 0.00 0.00 39.64 1.75
2857 3241 5.067153 ACACACAGTTTGCTGCTACAAATAA 59.933 36.000 0.00 0.00 46.30 1.40
3023 3569 6.325919 ACTTTTGCAAATTCTTCCATACGA 57.674 33.333 13.65 0.00 0.00 3.43
3045 3591 7.959109 GGTGTCCGTAATGAAATAGTACAAAAC 59.041 37.037 0.00 0.00 30.48 2.43
3064 3705 1.221840 CCTCCAGGATTGGTGTCCG 59.778 63.158 0.00 0.00 45.26 4.79
3078 3719 6.013379 TCATTATCTAGTGATCACCTCCTCC 58.987 44.000 22.21 0.00 34.32 4.30
3079 3720 7.531857 TTCATTATCTAGTGATCACCTCCTC 57.468 40.000 22.21 0.00 34.32 3.71
3119 3760 5.106475 GCGAGTGGTGTACAAATTTGGATTA 60.106 40.000 21.74 4.79 0.00 1.75
3137 3778 9.767684 TTGTTTTATCACAATATAAAGCGAGTG 57.232 29.630 0.00 0.00 36.11 3.51
3141 3782 8.479280 GCCATTGTTTTATCACAATATAAAGCG 58.521 33.333 0.00 0.00 44.08 4.68
3161 3802 4.175516 ACTGCAATAACAAATCGCCATTG 58.824 39.130 0.00 0.00 0.00 2.82
3162 3803 4.454728 ACTGCAATAACAAATCGCCATT 57.545 36.364 0.00 0.00 0.00 3.16
3163 3804 4.036734 CCTACTGCAATAACAAATCGCCAT 59.963 41.667 0.00 0.00 0.00 4.40
3164 3805 3.376859 CCTACTGCAATAACAAATCGCCA 59.623 43.478 0.00 0.00 0.00 5.69
3165 3806 3.377172 ACCTACTGCAATAACAAATCGCC 59.623 43.478 0.00 0.00 0.00 5.54
3166 3807 4.094294 TGACCTACTGCAATAACAAATCGC 59.906 41.667 0.00 0.00 0.00 4.58
3167 3808 5.794687 TGACCTACTGCAATAACAAATCG 57.205 39.130 0.00 0.00 0.00 3.34
3168 3809 8.507249 GGATATGACCTACTGCAATAACAAATC 58.493 37.037 0.00 0.00 0.00 2.17
3169 3810 7.448469 GGGATATGACCTACTGCAATAACAAAT 59.552 37.037 0.00 0.00 0.00 2.32
3170 3811 6.770785 GGGATATGACCTACTGCAATAACAAA 59.229 38.462 0.00 0.00 0.00 2.83
3171 3812 6.296026 GGGATATGACCTACTGCAATAACAA 58.704 40.000 0.00 0.00 0.00 2.83
3172 3813 5.221843 GGGGATATGACCTACTGCAATAACA 60.222 44.000 0.00 0.00 0.00 2.41
3173 3814 5.221843 TGGGGATATGACCTACTGCAATAAC 60.222 44.000 0.00 0.00 0.00 1.89
3174 3815 4.910913 TGGGGATATGACCTACTGCAATAA 59.089 41.667 0.00 0.00 0.00 1.40
3175 3816 4.286032 GTGGGGATATGACCTACTGCAATA 59.714 45.833 0.00 0.00 36.63 1.90
3176 3817 3.073062 GTGGGGATATGACCTACTGCAAT 59.927 47.826 0.00 0.00 36.63 3.56
3177 3818 2.438021 GTGGGGATATGACCTACTGCAA 59.562 50.000 0.00 0.00 36.63 4.08
3178 3819 2.047061 GTGGGGATATGACCTACTGCA 58.953 52.381 3.17 0.00 36.63 4.41
3179 3820 2.330216 AGTGGGGATATGACCTACTGC 58.670 52.381 10.23 0.00 46.47 4.40
3182 3823 6.491383 TCTACATAGTGGGGATATGACCTAC 58.509 44.000 0.24 2.34 39.52 3.18
3183 3824 6.277283 ACTCTACATAGTGGGGATATGACCTA 59.723 42.308 0.24 0.00 35.15 3.08
3184 3825 5.076598 ACTCTACATAGTGGGGATATGACCT 59.923 44.000 0.24 0.00 35.15 3.85
3185 3826 5.186021 CACTCTACATAGTGGGGATATGACC 59.814 48.000 0.24 0.00 42.63 4.02
3186 3827 6.274157 CACTCTACATAGTGGGGATATGAC 57.726 45.833 0.24 0.00 42.63 3.06
3205 3846 2.674796 AAACCGCATAGAGTCCACTC 57.325 50.000 0.00 0.00 43.17 3.51
3206 3847 4.546829 TTAAAACCGCATAGAGTCCACT 57.453 40.909 0.00 0.00 0.00 4.00
3207 3848 6.913873 TTATTAAAACCGCATAGAGTCCAC 57.086 37.500 0.00 0.00 0.00 4.02
3208 3849 9.048446 GTATTTATTAAAACCGCATAGAGTCCA 57.952 33.333 0.00 0.00 0.00 4.02
3209 3850 8.501580 GGTATTTATTAAAACCGCATAGAGTCC 58.498 37.037 0.00 0.00 0.00 3.85
3210 3851 9.269453 AGGTATTTATTAAAACCGCATAGAGTC 57.731 33.333 11.49 0.00 37.09 3.36
3211 3852 9.623000 AAGGTATTTATTAAAACCGCATAGAGT 57.377 29.630 11.49 0.00 37.09 3.24
3241 3882 9.947669 GAACGATAAAAGCTAGTACATCTCTAA 57.052 33.333 0.00 0.00 0.00 2.10
3242 3883 9.339850 AGAACGATAAAAGCTAGTACATCTCTA 57.660 33.333 0.00 0.00 0.00 2.43
3243 3884 8.132362 CAGAACGATAAAAGCTAGTACATCTCT 58.868 37.037 0.00 0.00 0.00 3.10
3244 3885 7.916450 ACAGAACGATAAAAGCTAGTACATCTC 59.084 37.037 0.00 0.00 0.00 2.75
3245 3886 7.773149 ACAGAACGATAAAAGCTAGTACATCT 58.227 34.615 0.00 0.00 0.00 2.90
3246 3887 7.988904 ACAGAACGATAAAAGCTAGTACATC 57.011 36.000 0.00 0.00 0.00 3.06
3247 3888 8.773404 AAACAGAACGATAAAAGCTAGTACAT 57.227 30.769 0.00 0.00 0.00 2.29
3248 3889 9.865321 ATAAACAGAACGATAAAAGCTAGTACA 57.135 29.630 0.00 0.00 0.00 2.90
3251 3892 8.997621 TGATAAACAGAACGATAAAAGCTAGT 57.002 30.769 0.00 0.00 0.00 2.57
3268 3909 6.294286 CCATGCATGATACATGCTGATAAACA 60.294 38.462 28.31 12.68 44.79 2.83
3269 3910 6.090783 CCATGCATGATACATGCTGATAAAC 58.909 40.000 28.31 6.55 44.79 2.01
3270 3911 5.771165 ACCATGCATGATACATGCTGATAAA 59.229 36.000 28.31 13.83 44.79 1.40
3271 3912 5.318630 ACCATGCATGATACATGCTGATAA 58.681 37.500 28.31 14.40 44.79 1.75
3272 3913 4.913784 ACCATGCATGATACATGCTGATA 58.086 39.130 28.31 14.69 44.79 2.15
3273 3914 3.763057 ACCATGCATGATACATGCTGAT 58.237 40.909 28.31 16.79 44.79 2.90
3274 3915 3.217681 ACCATGCATGATACATGCTGA 57.782 42.857 28.31 15.56 44.79 4.26
3275 3916 3.067601 ACAACCATGCATGATACATGCTG 59.932 43.478 28.31 23.16 44.79 4.41
3276 3917 3.293337 ACAACCATGCATGATACATGCT 58.707 40.909 28.31 16.19 44.79 3.79
3277 3918 3.720949 ACAACCATGCATGATACATGC 57.279 42.857 28.31 23.96 42.89 4.06
3278 3919 9.917129 ATTTATTACAACCATGCATGATACATG 57.083 29.630 28.31 18.68 43.67 3.21
3279 3920 9.917129 CATTTATTACAACCATGCATGATACAT 57.083 29.630 28.31 11.52 0.00 2.29
3280 3921 8.911965 ACATTTATTACAACCATGCATGATACA 58.088 29.630 28.31 9.77 0.00 2.29
3283 3924 9.135189 AGTACATTTATTACAACCATGCATGAT 57.865 29.630 28.31 8.39 0.00 2.45
3284 3925 8.518430 AGTACATTTATTACAACCATGCATGA 57.482 30.769 28.31 7.14 0.00 3.07
3285 3926 9.236691 GAAGTACATTTATTACAACCATGCATG 57.763 33.333 20.19 20.19 0.00 4.06
3286 3927 9.189156 AGAAGTACATTTATTACAACCATGCAT 57.811 29.630 0.00 0.00 0.00 3.96
3287 3928 8.574251 AGAAGTACATTTATTACAACCATGCA 57.426 30.769 0.00 0.00 0.00 3.96
3288 3929 9.855021 AAAGAAGTACATTTATTACAACCATGC 57.145 29.630 0.00 0.00 0.00 4.06
3290 3931 9.855021 GCAAAGAAGTACATTTATTACAACCAT 57.145 29.630 0.00 0.00 0.00 3.55
3291 3932 8.301002 GGCAAAGAAGTACATTTATTACAACCA 58.699 33.333 0.00 0.00 0.00 3.67
3292 3933 8.301002 TGGCAAAGAAGTACATTTATTACAACC 58.699 33.333 0.00 0.00 0.00 3.77
3293 3934 9.855021 ATGGCAAAGAAGTACATTTATTACAAC 57.145 29.630 0.00 0.00 0.00 3.32
3295 3936 9.461312 AGATGGCAAAGAAGTACATTTATTACA 57.539 29.630 0.00 0.00 0.00 2.41
3298 3939 9.023962 TCAAGATGGCAAAGAAGTACATTTATT 57.976 29.630 0.00 0.00 0.00 1.40
3299 3940 8.579850 TCAAGATGGCAAAGAAGTACATTTAT 57.420 30.769 0.00 0.00 0.00 1.40
3300 3941 7.994425 TCAAGATGGCAAAGAAGTACATTTA 57.006 32.000 0.00 0.00 0.00 1.40
3301 3942 6.899393 TCAAGATGGCAAAGAAGTACATTT 57.101 33.333 0.00 0.00 0.00 2.32
3302 3943 6.491403 AGTTCAAGATGGCAAAGAAGTACATT 59.509 34.615 0.00 0.00 0.00 2.71
3303 3944 6.006449 AGTTCAAGATGGCAAAGAAGTACAT 58.994 36.000 0.00 0.00 0.00 2.29
3304 3945 5.376625 AGTTCAAGATGGCAAAGAAGTACA 58.623 37.500 0.00 0.00 0.00 2.90
3305 3946 5.948992 AGTTCAAGATGGCAAAGAAGTAC 57.051 39.130 0.00 0.00 0.00 2.73
3306 3947 6.959639 AAAGTTCAAGATGGCAAAGAAGTA 57.040 33.333 0.00 0.00 0.00 2.24
3307 3948 5.859205 AAAGTTCAAGATGGCAAAGAAGT 57.141 34.783 0.00 0.00 0.00 3.01
3328 3969 8.202137 GCGCCCAATCCTTCTAGTATATATAAA 58.798 37.037 0.00 0.00 0.00 1.40
3329 3970 7.469594 CGCGCCCAATCCTTCTAGTATATATAA 60.470 40.741 0.00 0.00 0.00 0.98
3330 3971 6.016527 CGCGCCCAATCCTTCTAGTATATATA 60.017 42.308 0.00 0.00 0.00 0.86
3331 3972 5.221263 CGCGCCCAATCCTTCTAGTATATAT 60.221 44.000 0.00 0.00 0.00 0.86
3332 3973 4.097437 CGCGCCCAATCCTTCTAGTATATA 59.903 45.833 0.00 0.00 0.00 0.86
3333 3974 3.119101 CGCGCCCAATCCTTCTAGTATAT 60.119 47.826 0.00 0.00 0.00 0.86
3370 4011 9.847224 TTCTTTTTAAGAATCTCTACAACACCT 57.153 29.630 0.00 0.00 42.31 4.00
3431 4082 9.599866 CTTAAAGAGGTTGGACTTTTCAAAAAT 57.400 29.630 0.00 0.00 37.49 1.82
3547 4205 3.555956 CGACATCCACAATACTAAGCCAC 59.444 47.826 0.00 0.00 0.00 5.01
3555 4213 7.925993 TCCAAAAATATCGACATCCACAATAC 58.074 34.615 0.00 0.00 0.00 1.89
3607 4267 7.309012 GGGGTATTAGTTCTTTGGAAAGTCAAC 60.309 40.741 0.00 0.00 37.31 3.18
3647 4309 1.694150 CCTCATCCGCCTATCCTTCAA 59.306 52.381 0.00 0.00 0.00 2.69
3651 4313 0.252012 CTCCCTCATCCGCCTATCCT 60.252 60.000 0.00 0.00 0.00 3.24
3655 4317 1.528542 CGTCTCCCTCATCCGCCTA 60.529 63.158 0.00 0.00 0.00 3.93
3656 4318 2.648613 ATCGTCTCCCTCATCCGCCT 62.649 60.000 0.00 0.00 0.00 5.52
3665 4336 0.251832 ACACACTCCATCGTCTCCCT 60.252 55.000 0.00 0.00 0.00 4.20
3712 4384 2.899256 CACCATGAAAGGTCCACCAATT 59.101 45.455 0.00 0.00 40.77 2.32
3713 4385 2.158325 ACACCATGAAAGGTCCACCAAT 60.158 45.455 0.00 0.00 40.77 3.16
3714 4386 1.216678 ACACCATGAAAGGTCCACCAA 59.783 47.619 0.00 0.00 40.77 3.67
3749 4422 6.150976 CCCACAAAAGTATGAGTTGATTAGCA 59.849 38.462 0.00 0.00 0.00 3.49
3775 4448 0.643820 GCCACCGACGTAGAAATTCG 59.356 55.000 0.00 0.00 0.00 3.34
3776 4449 2.005971 AGCCACCGACGTAGAAATTC 57.994 50.000 0.00 0.00 0.00 2.17
3806 4479 7.609146 CCATGTGATGATACTATAGCACCAATT 59.391 37.037 0.00 0.00 0.00 2.32
3847 4520 1.906574 TGCACCCTCTTACCAACTAGG 59.093 52.381 0.00 0.00 45.67 3.02
3852 4525 1.373435 CCGTGCACCCTCTTACCAA 59.627 57.895 12.15 0.00 0.00 3.67
3891 4564 7.912056 TTTTCAAATCAATCAACACCAACAA 57.088 28.000 0.00 0.00 0.00 2.83
3892 4565 7.912056 TTTTTCAAATCAATCAACACCAACA 57.088 28.000 0.00 0.00 0.00 3.33
4097 4781 9.725019 CACTATGCTTCCTAATATTTATGTCCA 57.275 33.333 0.00 0.00 0.00 4.02
4131 4816 0.521735 CAAAGCGTGCCTAACCCTTC 59.478 55.000 0.00 0.00 0.00 3.46
4146 4831 4.101790 ATCAACGGCGCCGCAAAG 62.102 61.111 46.22 31.79 44.19 2.77
4147 4832 4.397090 CATCAACGGCGCCGCAAA 62.397 61.111 46.22 31.52 44.19 3.68
4151 4836 3.248630 AACAACATCAACGGCGCCG 62.249 57.895 44.88 44.88 46.03 6.46
4152 4837 1.729131 CAACAACATCAACGGCGCC 60.729 57.895 19.07 19.07 0.00 6.53
4153 4838 0.725784 CTCAACAACATCAACGGCGC 60.726 55.000 6.90 0.00 0.00 6.53
4154 4839 0.865111 TCTCAACAACATCAACGGCG 59.135 50.000 4.80 4.80 0.00 6.46
4155 4840 3.189287 AGAATCTCAACAACATCAACGGC 59.811 43.478 0.00 0.00 0.00 5.68
4156 4841 5.362556 AAGAATCTCAACAACATCAACGG 57.637 39.130 0.00 0.00 0.00 4.44
4157 4842 8.955061 ATTTAAGAATCTCAACAACATCAACG 57.045 30.769 0.00 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.