Multiple sequence alignment - TraesCS4D01G063800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G063800 chr4D 100.000 2495 0 0 1 2495 39367052 39364558 0.000000e+00 4608.0
1 TraesCS4D01G063800 chr4D 82.701 422 50 16 1074 1494 39273807 39274206 1.100000e-93 353.0
2 TraesCS4D01G063800 chr4A 82.955 1279 94 47 987 2210 560998565 560997356 0.000000e+00 1040.0
3 TraesCS4D01G063800 chr4A 90.780 282 22 4 2215 2495 441960622 441960344 8.430000e-100 374.0
4 TraesCS4D01G063800 chr4A 84.314 408 37 13 111 515 560999515 560999132 8.430000e-100 374.0
5 TraesCS4D01G063800 chr4A 82.482 411 51 13 1088 1494 561106028 561105635 8.550000e-90 340.0
6 TraesCS4D01G063800 chr4B 78.639 955 116 48 575 1488 57743898 57744805 1.010000e-153 553.0
7 TraesCS4D01G063800 chr4B 82.033 423 56 13 1073 1494 57272045 57271642 2.380000e-90 342.0
8 TraesCS4D01G063800 chr4B 83.155 374 41 17 1070 1425 57529996 57530365 3.100000e-84 322.0
9 TraesCS4D01G063800 chr3A 92.958 284 19 1 2212 2495 382147529 382147811 1.790000e-111 412.0
10 TraesCS4D01G063800 chr3A 90.941 287 20 4 2210 2495 604692023 604691742 5.040000e-102 381.0
11 TraesCS4D01G063800 chr3A 81.988 161 25 2 99 259 83958503 83958659 1.560000e-27 134.0
12 TraesCS4D01G063800 chr3A 76.596 282 39 15 255 516 1004263 1003989 2.010000e-26 130.0
13 TraesCS4D01G063800 chr3A 74.030 335 65 19 187 517 120354385 120354701 1.570000e-22 117.0
14 TraesCS4D01G063800 chr5A 92.254 284 21 1 2212 2495 265273308 265273026 3.870000e-108 401.0
15 TraesCS4D01G063800 chr5D 91.873 283 20 3 2212 2494 497703652 497703373 2.330000e-105 392.0
16 TraesCS4D01G063800 chr5D 75.652 230 34 14 255 480 389824862 389825073 7.350000e-16 95.3
17 TraesCS4D01G063800 chr3D 91.319 288 19 5 2210 2495 536119516 536119799 3.010000e-104 388.0
18 TraesCS4D01G063800 chr3D 91.139 79 7 0 180 258 594061537 594061615 9.440000e-20 108.0
19 TraesCS4D01G063800 chr2D 91.289 287 21 4 2210 2495 640818532 640818815 3.010000e-104 388.0
20 TraesCS4D01G063800 chr2D 73.746 339 65 19 176 507 616435702 616436023 7.290000e-21 111.0
21 TraesCS4D01G063800 chrUn 92.279 272 18 3 2223 2494 310665008 310665276 1.400000e-102 383.0
22 TraesCS4D01G063800 chr2B 91.429 280 23 1 2216 2495 31908488 31908766 1.400000e-102 383.0
23 TraesCS4D01G063800 chr2B 80.620 258 27 8 1 258 172860258 172860492 7.090000e-41 178.0
24 TraesCS4D01G063800 chr2B 76.562 192 25 12 255 442 799037429 799037604 1.230000e-13 87.9
25 TraesCS4D01G063800 chr2A 89.051 137 15 0 1289 1425 541387022 541386886 1.190000e-38 171.0
26 TraesCS4D01G063800 chr2A 76.667 270 42 11 255 507 745734782 745735047 2.010000e-26 130.0
27 TraesCS4D01G063800 chr2A 88.060 67 8 0 255 321 745815125 745815191 2.060000e-11 80.5
28 TraesCS4D01G063800 chr6B 78.676 272 40 10 255 513 533533110 533532844 5.520000e-37 165.0
29 TraesCS4D01G063800 chr1D 74.664 446 65 16 99 527 363058822 363058408 1.200000e-33 154.0
30 TraesCS4D01G063800 chr1D 75.829 211 26 8 111 321 298336467 298336282 1.590000e-12 84.2
31 TraesCS4D01G063800 chr6A 76.061 330 53 20 176 495 496238683 496238370 5.560000e-32 148.0
32 TraesCS4D01G063800 chr1B 73.803 355 69 19 158 506 322116644 322116980 4.360000e-23 119.0
33 TraesCS4D01G063800 chr6D 73.278 363 75 19 158 514 347136457 347136803 2.030000e-21 113.0
34 TraesCS4D01G063800 chr1A 74.643 280 49 13 255 517 371826218 371825944 1.220000e-18 104.0
35 TraesCS4D01G063800 chr7B 73.228 254 44 17 251 497 678264717 678264953 1.240000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G063800 chr4D 39364558 39367052 2494 True 4608 4608 100.0000 1 2495 1 chr4D.!!$R1 2494
1 TraesCS4D01G063800 chr4A 560997356 560999515 2159 True 707 1040 83.6345 111 2210 2 chr4A.!!$R3 2099
2 TraesCS4D01G063800 chr4B 57743898 57744805 907 False 553 553 78.6390 575 1488 1 chr4B.!!$F2 913

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
940 1092 0.034059 GCGGATCCATCGACTCCAAT 59.966 55.0 13.41 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2054 2280 0.038159 AGTGACTACTGCAACTCCGC 60.038 55.0 0.0 0.0 35.34 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.761910 GTATGAACGAGCACTACACATG 57.238 45.455 0.00 0.00 0.00 3.21
22 23 2.078849 TGAACGAGCACTACACATGG 57.921 50.000 0.00 0.00 0.00 3.66
23 24 1.616374 TGAACGAGCACTACACATGGA 59.384 47.619 0.00 0.00 0.00 3.41
24 25 1.993370 GAACGAGCACTACACATGGAC 59.007 52.381 0.00 0.00 0.00 4.02
25 26 0.966179 ACGAGCACTACACATGGACA 59.034 50.000 0.00 0.00 0.00 4.02
26 27 1.067565 ACGAGCACTACACATGGACAG 60.068 52.381 0.00 0.00 0.00 3.51
27 28 1.067565 CGAGCACTACACATGGACAGT 60.068 52.381 0.00 0.00 0.00 3.55
28 29 2.341257 GAGCACTACACATGGACAGTG 58.659 52.381 14.89 14.89 41.06 3.66
37 38 3.281727 ACATGGACAGTGTGAACAAGT 57.718 42.857 0.00 0.00 0.00 3.16
38 39 4.415881 ACATGGACAGTGTGAACAAGTA 57.584 40.909 0.00 0.00 0.00 2.24
39 40 4.127171 ACATGGACAGTGTGAACAAGTAC 58.873 43.478 0.00 0.00 0.00 2.73
40 41 4.141711 ACATGGACAGTGTGAACAAGTACT 60.142 41.667 0.00 0.00 0.00 2.73
41 42 5.069914 ACATGGACAGTGTGAACAAGTACTA 59.930 40.000 0.00 0.00 0.00 1.82
42 43 4.940463 TGGACAGTGTGAACAAGTACTAC 58.060 43.478 0.00 0.00 0.00 2.73
43 44 4.403113 TGGACAGTGTGAACAAGTACTACA 59.597 41.667 0.00 0.00 0.00 2.74
44 45 4.743644 GGACAGTGTGAACAAGTACTACAC 59.256 45.833 15.17 15.17 41.32 2.90
45 46 5.333299 ACAGTGTGAACAAGTACTACACA 57.667 39.130 21.89 18.72 42.93 3.72
46 47 5.726397 ACAGTGTGAACAAGTACTACACAA 58.274 37.500 21.89 8.50 42.93 3.33
47 48 5.810587 ACAGTGTGAACAAGTACTACACAAG 59.189 40.000 21.89 17.04 42.93 3.16
48 49 5.810587 CAGTGTGAACAAGTACTACACAAGT 59.189 40.000 21.89 12.34 42.93 3.16
49 50 6.976349 CAGTGTGAACAAGTACTACACAAGTA 59.024 38.462 21.89 3.62 42.93 2.24
59 60 4.698583 ACTACACAAGTACAGACGGATC 57.301 45.455 0.00 0.00 36.36 3.36
60 61 4.077108 ACTACACAAGTACAGACGGATCA 58.923 43.478 0.00 0.00 36.36 2.92
61 62 4.705507 ACTACACAAGTACAGACGGATCAT 59.294 41.667 0.00 0.00 36.36 2.45
62 63 4.111375 ACACAAGTACAGACGGATCATC 57.889 45.455 0.00 0.00 0.00 2.92
63 64 3.764434 ACACAAGTACAGACGGATCATCT 59.236 43.478 0.00 0.00 0.00 2.90
64 65 4.948004 ACACAAGTACAGACGGATCATCTA 59.052 41.667 0.00 0.00 0.00 1.98
65 66 5.066634 ACACAAGTACAGACGGATCATCTAG 59.933 44.000 0.00 0.00 0.00 2.43
66 67 5.066634 CACAAGTACAGACGGATCATCTAGT 59.933 44.000 0.00 1.68 0.00 2.57
67 68 5.652891 ACAAGTACAGACGGATCATCTAGTT 59.347 40.000 0.00 0.00 0.00 2.24
68 69 6.183360 ACAAGTACAGACGGATCATCTAGTTC 60.183 42.308 0.00 0.00 0.00 3.01
69 70 5.437946 AGTACAGACGGATCATCTAGTTCA 58.562 41.667 0.00 0.00 0.00 3.18
70 71 5.886474 AGTACAGACGGATCATCTAGTTCAA 59.114 40.000 0.00 0.00 0.00 2.69
71 72 5.000012 ACAGACGGATCATCTAGTTCAAC 58.000 43.478 0.00 0.00 0.00 3.18
72 73 4.707448 ACAGACGGATCATCTAGTTCAACT 59.293 41.667 0.00 0.00 0.00 3.16
73 74 5.163602 ACAGACGGATCATCTAGTTCAACTC 60.164 44.000 0.00 0.00 0.00 3.01
74 75 4.950475 AGACGGATCATCTAGTTCAACTCA 59.050 41.667 0.00 0.00 0.00 3.41
75 76 5.067153 AGACGGATCATCTAGTTCAACTCAG 59.933 44.000 0.00 0.00 0.00 3.35
76 77 4.047822 CGGATCATCTAGTTCAACTCAGC 58.952 47.826 0.00 0.00 0.00 4.26
77 78 4.440663 CGGATCATCTAGTTCAACTCAGCA 60.441 45.833 0.00 0.00 0.00 4.41
78 79 5.049167 GGATCATCTAGTTCAACTCAGCAG 58.951 45.833 0.00 0.00 0.00 4.24
79 80 3.854666 TCATCTAGTTCAACTCAGCAGC 58.145 45.455 0.00 0.00 0.00 5.25
80 81 3.259123 TCATCTAGTTCAACTCAGCAGCA 59.741 43.478 0.00 0.00 0.00 4.41
81 82 3.969287 TCTAGTTCAACTCAGCAGCAT 57.031 42.857 0.00 0.00 0.00 3.79
82 83 5.127682 TCATCTAGTTCAACTCAGCAGCATA 59.872 40.000 0.00 0.00 0.00 3.14
83 84 4.748892 TCTAGTTCAACTCAGCAGCATAC 58.251 43.478 0.00 0.00 0.00 2.39
84 85 2.341257 AGTTCAACTCAGCAGCATACG 58.659 47.619 0.00 0.00 0.00 3.06
85 86 2.029020 AGTTCAACTCAGCAGCATACGA 60.029 45.455 0.00 0.00 0.00 3.43
86 87 2.736721 GTTCAACTCAGCAGCATACGAA 59.263 45.455 0.00 0.00 0.00 3.85
87 88 3.251479 TCAACTCAGCAGCATACGAAT 57.749 42.857 0.00 0.00 0.00 3.34
88 89 2.931969 TCAACTCAGCAGCATACGAATG 59.068 45.455 0.00 0.00 36.09 2.67
89 90 2.674852 CAACTCAGCAGCATACGAATGT 59.325 45.455 0.00 0.00 35.38 2.71
90 91 2.977914 ACTCAGCAGCATACGAATGTT 58.022 42.857 0.00 0.00 35.38 2.71
91 92 2.932614 ACTCAGCAGCATACGAATGTTC 59.067 45.455 0.00 0.00 35.38 3.18
92 93 3.193263 CTCAGCAGCATACGAATGTTCT 58.807 45.455 0.00 0.00 35.38 3.01
93 94 3.599343 TCAGCAGCATACGAATGTTCTT 58.401 40.909 0.00 0.00 35.38 2.52
94 95 4.002982 TCAGCAGCATACGAATGTTCTTT 58.997 39.130 0.00 0.00 35.38 2.52
95 96 5.175127 TCAGCAGCATACGAATGTTCTTTA 58.825 37.500 0.00 0.00 35.38 1.85
96 97 5.641636 TCAGCAGCATACGAATGTTCTTTAA 59.358 36.000 0.00 0.00 35.38 1.52
97 98 6.316140 TCAGCAGCATACGAATGTTCTTTAAT 59.684 34.615 0.00 0.00 35.38 1.40
98 99 6.630443 CAGCAGCATACGAATGTTCTTTAATC 59.370 38.462 0.00 0.00 35.38 1.75
99 100 6.540189 AGCAGCATACGAATGTTCTTTAATCT 59.460 34.615 0.00 0.00 35.38 2.40
100 101 6.848296 GCAGCATACGAATGTTCTTTAATCTC 59.152 38.462 0.00 0.00 35.38 2.75
101 102 7.465916 GCAGCATACGAATGTTCTTTAATCTCA 60.466 37.037 0.00 0.00 35.38 3.27
102 103 8.390354 CAGCATACGAATGTTCTTTAATCTCAA 58.610 33.333 0.00 0.00 35.38 3.02
103 104 8.946085 AGCATACGAATGTTCTTTAATCTCAAA 58.054 29.630 0.00 0.00 35.38 2.69
104 105 9.214953 GCATACGAATGTTCTTTAATCTCAAAG 57.785 33.333 0.00 0.00 35.07 2.77
105 106 9.214953 CATACGAATGTTCTTTAATCTCAAAGC 57.785 33.333 0.00 0.00 35.82 3.51
106 107 7.202016 ACGAATGTTCTTTAATCTCAAAGCA 57.798 32.000 0.00 0.00 35.82 3.91
107 108 7.820648 ACGAATGTTCTTTAATCTCAAAGCAT 58.179 30.769 0.00 0.00 35.82 3.79
108 109 7.752239 ACGAATGTTCTTTAATCTCAAAGCATG 59.248 33.333 0.00 0.00 35.82 4.06
109 110 7.253552 CGAATGTTCTTTAATCTCAAAGCATGC 60.254 37.037 10.51 10.51 35.82 4.06
124 125 1.340889 GCATGCCAAGGAGTTCAACAA 59.659 47.619 6.36 0.00 0.00 2.83
125 126 2.224018 GCATGCCAAGGAGTTCAACAAA 60.224 45.455 6.36 0.00 0.00 2.83
151 152 2.294233 CCACACATGCTTGCAAACTAGT 59.706 45.455 0.00 0.00 0.00 2.57
182 183 8.383318 ACACATCAACTAGCATATTACCAATC 57.617 34.615 0.00 0.00 0.00 2.67
184 185 6.650807 ACATCAACTAGCATATTACCAATCCG 59.349 38.462 0.00 0.00 0.00 4.18
189 190 1.539827 GCATATTACCAATCCGCCACC 59.460 52.381 0.00 0.00 0.00 4.61
226 227 5.357878 TCATTGCTGACATGGAAATAACTCC 59.642 40.000 0.00 0.00 35.88 3.85
240 241 6.542370 GGAAATAACTCCTAGCATGCTACAAA 59.458 38.462 23.52 10.51 32.21 2.83
241 242 7.229506 GGAAATAACTCCTAGCATGCTACAAAT 59.770 37.037 23.52 11.10 32.21 2.32
242 243 7.736447 AATAACTCCTAGCATGCTACAAATC 57.264 36.000 23.52 0.00 0.00 2.17
243 244 4.078639 ACTCCTAGCATGCTACAAATCC 57.921 45.455 23.52 0.00 0.00 3.01
244 245 3.455910 ACTCCTAGCATGCTACAAATCCA 59.544 43.478 23.52 2.64 0.00 3.41
245 246 4.103785 ACTCCTAGCATGCTACAAATCCAT 59.896 41.667 23.52 0.00 0.00 3.41
246 247 4.645535 TCCTAGCATGCTACAAATCCATC 58.354 43.478 23.52 0.00 0.00 3.51
247 248 4.102996 TCCTAGCATGCTACAAATCCATCA 59.897 41.667 23.52 0.50 0.00 3.07
248 249 4.214971 CCTAGCATGCTACAAATCCATCAC 59.785 45.833 23.52 0.00 0.00 3.06
249 250 2.954318 AGCATGCTACAAATCCATCACC 59.046 45.455 21.21 0.00 0.00 4.02
250 251 2.689471 GCATGCTACAAATCCATCACCA 59.311 45.455 11.37 0.00 0.00 4.17
251 252 3.489738 GCATGCTACAAATCCATCACCAC 60.490 47.826 11.37 0.00 0.00 4.16
252 253 3.719268 TGCTACAAATCCATCACCACT 57.281 42.857 0.00 0.00 0.00 4.00
253 254 4.835284 TGCTACAAATCCATCACCACTA 57.165 40.909 0.00 0.00 0.00 2.74
254 255 4.769688 TGCTACAAATCCATCACCACTAG 58.230 43.478 0.00 0.00 0.00 2.57
255 256 3.561725 GCTACAAATCCATCACCACTAGC 59.438 47.826 0.00 0.00 0.00 3.42
256 257 4.684485 GCTACAAATCCATCACCACTAGCT 60.684 45.833 0.00 0.00 0.00 3.32
257 258 5.453339 GCTACAAATCCATCACCACTAGCTA 60.453 44.000 0.00 0.00 0.00 3.32
258 259 4.770795 ACAAATCCATCACCACTAGCTAC 58.229 43.478 0.00 0.00 0.00 3.58
259 260 4.225042 ACAAATCCATCACCACTAGCTACA 59.775 41.667 0.00 0.00 0.00 2.74
260 261 5.185454 CAAATCCATCACCACTAGCTACAA 58.815 41.667 0.00 0.00 0.00 2.41
261 262 5.435686 AATCCATCACCACTAGCTACAAA 57.564 39.130 0.00 0.00 0.00 2.83
290 291 3.195825 ACCACTAGCTACCAGAACATCAC 59.804 47.826 0.00 0.00 0.00 3.06
298 299 5.104610 AGCTACCAGAACATCACATTCTCAT 60.105 40.000 0.00 0.00 34.08 2.90
306 307 7.114670 CAGAACATCACATTCTCATAGATCGAC 59.885 40.741 0.00 0.00 34.08 4.20
313 314 7.862873 TCACATTCTCATAGATCGACAATGTAC 59.137 37.037 0.00 0.00 32.54 2.90
345 346 3.063588 CACAGCTTATCACATGCTCACAG 59.936 47.826 0.00 0.00 35.55 3.66
350 351 5.303845 AGCTTATCACATGCTCACAGATCTA 59.696 40.000 0.00 0.00 32.36 1.98
355 356 4.277921 TCACATGCTCACAGATCTAGCTAG 59.722 45.833 15.01 15.01 37.16 3.42
360 361 4.133820 GCTCACAGATCTAGCTAGAGTGA 58.866 47.826 28.67 28.67 34.60 3.41
373 374 5.925509 AGCTAGAGTGAGTAAGTAGAGAGG 58.074 45.833 0.00 0.00 0.00 3.69
384 386 1.940957 AGTAGAGAGGAGGGGGTGATT 59.059 52.381 0.00 0.00 0.00 2.57
399 401 3.191371 GGGTGATTGAACTCACAACCATC 59.809 47.826 6.55 0.00 45.95 3.51
402 404 4.393062 GTGATTGAACTCACAACCATCGAT 59.607 41.667 0.00 0.00 44.03 3.59
405 407 1.061131 GAACTCACAACCATCGATGCG 59.939 52.381 20.25 14.99 0.00 4.73
409 411 2.823593 CAACCATCGATGCGGCCA 60.824 61.111 20.25 0.00 0.00 5.36
410 412 2.045438 AACCATCGATGCGGCCAA 60.045 55.556 20.25 0.00 0.00 4.52
425 427 1.581447 CCAAAAGGAGGCGCAGAAC 59.419 57.895 10.83 0.00 0.00 3.01
447 449 2.381961 AGGTCAGAGAAGAGGAGGACTT 59.618 50.000 0.00 0.00 0.00 3.01
450 452 3.829601 GTCAGAGAAGAGGAGGACTTGAA 59.170 47.826 0.00 0.00 0.00 2.69
452 454 5.046663 GTCAGAGAAGAGGAGGACTTGAATT 60.047 44.000 0.00 0.00 0.00 2.17
453 455 5.046735 TCAGAGAAGAGGAGGACTTGAATTG 60.047 44.000 0.00 0.00 0.00 2.32
454 456 3.938334 GAGAAGAGGAGGACTTGAATTGC 59.062 47.826 0.00 0.00 0.00 3.56
456 458 1.988107 AGAGGAGGACTTGAATTGCCA 59.012 47.619 0.00 0.00 0.00 4.92
457 459 2.087646 GAGGAGGACTTGAATTGCCAC 58.912 52.381 0.00 0.00 0.00 5.01
458 460 1.707427 AGGAGGACTTGAATTGCCACT 59.293 47.619 0.00 0.00 0.00 4.00
460 462 2.508526 GAGGACTTGAATTGCCACTGT 58.491 47.619 0.00 0.00 0.00 3.55
467 469 1.601903 TGAATTGCCACTGTCGTGAAC 59.398 47.619 0.00 0.00 43.97 3.18
487 489 4.436998 ACGGCCGGAGAAGAAGCG 62.437 66.667 31.76 0.00 0.00 4.68
535 617 0.322546 AAATCGGCAGAAGGTGACCC 60.323 55.000 0.00 0.00 0.00 4.46
545 627 3.777522 CAGAAGGTGACCCTAATTCCTCT 59.222 47.826 0.00 0.00 41.56 3.69
546 628 4.226168 CAGAAGGTGACCCTAATTCCTCTT 59.774 45.833 0.00 0.00 41.56 2.85
557 639 6.780522 ACCCTAATTCCTCTTGTTGCTTTTTA 59.219 34.615 0.00 0.00 0.00 1.52
558 640 7.289084 ACCCTAATTCCTCTTGTTGCTTTTTAA 59.711 33.333 0.00 0.00 0.00 1.52
563 645 8.648557 ATTCCTCTTGTTGCTTTTTAAAAGAC 57.351 30.769 20.14 11.07 0.00 3.01
564 646 7.164230 TCCTCTTGTTGCTTTTTAAAAGACA 57.836 32.000 20.14 13.31 0.00 3.41
565 647 7.781056 TCCTCTTGTTGCTTTTTAAAAGACAT 58.219 30.769 20.14 0.00 0.00 3.06
566 648 7.706179 TCCTCTTGTTGCTTTTTAAAAGACATG 59.294 33.333 20.14 16.30 0.00 3.21
570 652 7.176285 TGTTGCTTTTTAAAAGACATGCATC 57.824 32.000 20.14 10.86 0.00 3.91
601 683 2.284625 TCCATGGTCGCAGGAGGT 60.285 61.111 12.58 0.00 0.00 3.85
616 698 2.143594 GAGGTCAGCGTCGTGTTCCT 62.144 60.000 0.00 4.56 0.00 3.36
656 742 2.033602 CTGGGGGAACGGGTGAAC 59.966 66.667 0.00 0.00 0.00 3.18
674 760 0.824759 ACCGAGTGTTCCTATCAGGC 59.175 55.000 0.00 0.00 34.61 4.85
679 765 2.630580 GAGTGTTCCTATCAGGCCTAGG 59.369 54.545 13.29 13.29 37.66 3.02
685 771 1.414538 CCTATCAGGCCTAGGTGGGAA 60.415 57.143 3.98 0.00 36.00 3.97
700 786 2.551032 GTGGGAAGTGGTTTAAGTTCCG 59.449 50.000 5.04 0.00 46.60 4.30
705 791 2.927028 AGTGGTTTAAGTTCCGTGCTT 58.073 42.857 0.00 0.00 0.00 3.91
713 799 2.203337 TTCCGTGCTTTGCAGGCT 60.203 55.556 13.44 0.00 42.17 4.58
721 807 2.552315 GTGCTTTGCAGGCTAAACAGTA 59.448 45.455 13.44 0.00 40.08 2.74
722 808 3.004315 GTGCTTTGCAGGCTAAACAGTAA 59.996 43.478 13.44 0.00 40.08 2.24
723 809 3.634448 TGCTTTGCAGGCTAAACAGTAAA 59.366 39.130 13.44 0.00 33.32 2.01
724 810 4.098654 TGCTTTGCAGGCTAAACAGTAAAA 59.901 37.500 13.44 0.00 33.32 1.52
725 811 5.221422 TGCTTTGCAGGCTAAACAGTAAAAT 60.221 36.000 13.44 0.00 33.32 1.82
726 812 5.119125 GCTTTGCAGGCTAAACAGTAAAATG 59.881 40.000 6.51 0.00 0.00 2.32
727 813 4.173036 TGCAGGCTAAACAGTAAAATGC 57.827 40.909 0.00 0.00 0.00 3.56
728 814 3.571828 TGCAGGCTAAACAGTAAAATGCA 59.428 39.130 0.00 0.00 38.70 3.96
729 815 4.168760 GCAGGCTAAACAGTAAAATGCAG 58.831 43.478 0.00 0.00 0.00 4.41
730 816 4.082787 GCAGGCTAAACAGTAAAATGCAGA 60.083 41.667 0.00 0.00 0.00 4.26
731 817 5.393962 CAGGCTAAACAGTAAAATGCAGAC 58.606 41.667 0.00 0.00 0.00 3.51
732 818 5.048782 CAGGCTAAACAGTAAAATGCAGACA 60.049 40.000 0.00 0.00 0.00 3.41
733 819 5.182001 AGGCTAAACAGTAAAATGCAGACAG 59.818 40.000 0.00 0.00 0.00 3.51
734 820 5.393962 GCTAAACAGTAAAATGCAGACAGG 58.606 41.667 0.00 0.00 0.00 4.00
746 832 0.609957 CAGACAGGGAATGCAGGCAA 60.610 55.000 0.00 0.00 0.00 4.52
766 852 2.379972 ACCAAACGGTCCAATTTCACA 58.620 42.857 0.00 0.00 26.76 3.58
771 857 0.098728 CGGTCCAATTTCACATCGCC 59.901 55.000 0.00 0.00 0.00 5.54
774 860 0.035915 TCCAATTTCACATCGCCCGA 60.036 50.000 0.00 0.00 0.00 5.14
775 861 0.808125 CCAATTTCACATCGCCCGAA 59.192 50.000 0.00 0.00 0.00 4.30
780 866 0.108520 TTCACATCGCCCGAACCTAC 60.109 55.000 0.00 0.00 0.00 3.18
789 875 1.265454 CCCGAACCTACTTGGGCTCT 61.265 60.000 0.00 0.00 41.11 4.09
808 894 4.635765 GCTCTATGCAGGTAATCAAACACA 59.364 41.667 0.00 0.00 42.31 3.72
810 896 6.483307 GCTCTATGCAGGTAATCAAACACATA 59.517 38.462 0.00 0.00 42.31 2.29
811 897 7.173907 GCTCTATGCAGGTAATCAAACACATAT 59.826 37.037 0.00 0.00 42.31 1.78
812 898 8.978874 TCTATGCAGGTAATCAAACACATATT 57.021 30.769 0.00 0.00 0.00 1.28
823 912 4.704540 TCAAACACATATTTGGCCGAAGAT 59.295 37.500 12.01 9.50 39.57 2.40
828 917 5.065988 ACACATATTTGGCCGAAGATACAAC 59.934 40.000 12.58 0.00 0.00 3.32
838 984 2.591148 CGAAGATACAACCACGTACGTG 59.409 50.000 35.57 35.57 45.02 4.49
940 1092 0.034059 GCGGATCCATCGACTCCAAT 59.966 55.000 13.41 0.00 0.00 3.16
1052 1206 0.109086 ACAGATCGCACGGACTCAAG 60.109 55.000 0.00 0.00 0.00 3.02
1086 1243 2.246397 CACACACGCAAGCTGACG 59.754 61.111 7.07 7.07 45.62 4.35
1137 1294 0.753848 CCTTCGTCCTCCTCCTCTCC 60.754 65.000 0.00 0.00 0.00 3.71
1162 1325 1.270907 GCCTCCATCCGTATCCTCAT 58.729 55.000 0.00 0.00 0.00 2.90
1163 1326 1.066573 GCCTCCATCCGTATCCTCATG 60.067 57.143 0.00 0.00 0.00 3.07
1164 1327 1.066573 CCTCCATCCGTATCCTCATGC 60.067 57.143 0.00 0.00 0.00 4.06
1165 1328 1.898472 CTCCATCCGTATCCTCATGCT 59.102 52.381 0.00 0.00 0.00 3.79
1201 1364 0.733150 CGTGTGATACGCTCTCTCCA 59.267 55.000 0.00 0.00 46.92 3.86
1213 1376 2.109774 CTCTCTCCAGCACTTCATCCT 58.890 52.381 0.00 0.00 0.00 3.24
1241 1409 2.798976 TTTGTTGTGGATCAAGCAGC 57.201 45.000 0.00 0.00 36.66 5.25
1334 1502 1.265454 AAGAACTACCCCGGCCAGAG 61.265 60.000 2.24 0.00 0.00 3.35
1440 1608 2.483538 CCCCAAAACCAAGTGCTGAAAG 60.484 50.000 0.00 0.00 0.00 2.62
1475 1650 1.784856 CGTTCGTCGTGTTCATCTTGT 59.215 47.619 0.00 0.00 34.52 3.16
1502 1683 5.049680 TCTCGTGTTTGAGTTCAATAAAGCC 60.050 40.000 0.00 0.00 37.28 4.35
1510 1691 3.253230 AGTTCAATAAAGCCGCAATTGC 58.747 40.909 20.76 20.76 31.98 3.56
1527 1708 3.398954 TTGCGTCTTGAAACAACTGAC 57.601 42.857 0.00 0.00 0.00 3.51
1549 1735 3.552684 CGAATGGAATGGCAAGTTTGTGT 60.553 43.478 0.00 0.00 0.00 3.72
1568 1754 7.681939 TTGTGTCCTGGAATAAGTAATGAAC 57.318 36.000 0.00 0.00 0.00 3.18
1578 1764 8.956426 TGGAATAAGTAATGAACTGATTGGAAC 58.044 33.333 0.00 0.00 39.12 3.62
1580 1766 9.178758 GAATAAGTAATGAACTGATTGGAACCT 57.821 33.333 0.00 0.00 39.12 3.50
1612 1798 3.676093 GGAAGATGTCCGGAACTTCTTT 58.324 45.455 29.16 13.87 46.68 2.52
1613 1799 4.072839 GGAAGATGTCCGGAACTTCTTTT 58.927 43.478 29.16 15.05 46.68 2.27
1614 1800 4.519350 GGAAGATGTCCGGAACTTCTTTTT 59.481 41.667 29.16 14.58 46.68 1.94
1633 1819 2.697431 TTTGCGAAAAAGATGTCCGG 57.303 45.000 0.00 0.00 0.00 5.14
1634 1820 1.885560 TTGCGAAAAAGATGTCCGGA 58.114 45.000 0.00 0.00 0.00 5.14
1635 1821 1.885560 TGCGAAAAAGATGTCCGGAA 58.114 45.000 5.23 0.00 0.00 4.30
1636 1822 2.222886 TGCGAAAAAGATGTCCGGAAA 58.777 42.857 5.23 0.00 0.00 3.13
1637 1823 2.031508 TGCGAAAAAGATGTCCGGAAAC 60.032 45.455 5.23 0.00 0.00 2.78
1638 1824 2.225727 GCGAAAAAGATGTCCGGAAACT 59.774 45.455 5.23 2.67 0.00 2.66
1639 1825 3.304458 GCGAAAAAGATGTCCGGAAACTT 60.304 43.478 5.23 9.51 0.00 2.66
1651 1837 1.332904 CGGAAACTTGAACGCACTGTC 60.333 52.381 0.00 0.00 0.00 3.51
1667 1853 4.136796 CACTGTCCAAGGATGAAAAGACA 58.863 43.478 0.00 0.00 33.51 3.41
1696 1882 3.750639 TGGTTTCAGTTTTCACGTCAC 57.249 42.857 0.00 0.00 0.00 3.67
1720 1906 6.329986 ACATACCTTAACCATCCTCATCATGA 59.670 38.462 0.00 0.00 0.00 3.07
1721 1907 5.041191 ACCTTAACCATCCTCATCATGAC 57.959 43.478 0.00 0.00 0.00 3.06
1745 1931 5.066593 GGAGTTGTTTCTGTTCTCTGGATT 58.933 41.667 0.00 0.00 0.00 3.01
1751 1937 3.708403 TCTGTTCTCTGGATTGTGCAT 57.292 42.857 0.00 0.00 0.00 3.96
1770 1956 3.667360 CATGGCTCATCGTGATTGGATA 58.333 45.455 0.00 0.00 0.00 2.59
1791 1977 4.833478 ACATAGAGAACACTGAGGCAAT 57.167 40.909 0.00 0.00 0.00 3.56
1829 2019 2.809174 CCACTGCGACGATGCGAA 60.809 61.111 0.00 0.00 37.81 4.70
1831 2021 2.258591 ACTGCGACGATGCGAAGT 59.741 55.556 0.00 5.20 45.03 3.01
1844 2034 1.693083 GCGAAGTACATGACGTGCCC 61.693 60.000 0.00 0.00 0.00 5.36
1860 2050 4.135153 CCGTCGACAGGCTGGGAG 62.135 72.222 20.34 9.51 0.00 4.30
1861 2051 4.803426 CGTCGACAGGCTGGGAGC 62.803 72.222 20.34 9.23 41.46 4.70
1862 2052 3.695606 GTCGACAGGCTGGGAGCA 61.696 66.667 20.34 0.00 44.75 4.26
1863 2053 3.385384 TCGACAGGCTGGGAGCAG 61.385 66.667 20.34 3.32 44.75 4.24
1906 2096 4.760047 GCCGGCGAGAAAGGCTGA 62.760 66.667 12.58 0.00 46.83 4.26
1919 2109 1.661463 AGGCTGAACCATCTTCCTCA 58.339 50.000 0.00 0.00 43.14 3.86
1928 2118 0.745845 CATCTTCCTCAGCAACGGGG 60.746 60.000 0.00 0.00 0.00 5.73
1930 2120 0.909610 TCTTCCTCAGCAACGGGGAT 60.910 55.000 0.00 0.00 0.00 3.85
1936 2126 1.302431 CAGCAACGGGGATGTGACA 60.302 57.895 0.00 0.00 0.00 3.58
1947 2137 2.354003 GGGATGTGACAAAATGCCCTTG 60.354 50.000 0.00 0.00 0.00 3.61
1948 2138 2.562298 GGATGTGACAAAATGCCCTTGA 59.438 45.455 0.00 0.00 0.00 3.02
1951 2141 4.478206 TGTGACAAAATGCCCTTGAAAA 57.522 36.364 0.00 0.00 0.00 2.29
1953 2143 5.435291 TGTGACAAAATGCCCTTGAAAAAT 58.565 33.333 0.00 0.00 0.00 1.82
1954 2144 6.586344 TGTGACAAAATGCCCTTGAAAAATA 58.414 32.000 0.00 0.00 0.00 1.40
2005 2207 8.836413 TGTATCTTAATGCTGCATAAAACCTAC 58.164 33.333 16.58 13.09 0.00 3.18
2011 2213 2.706890 CTGCATAAAACCTACCGGTGT 58.293 47.619 19.93 4.09 44.73 4.16
2013 2215 2.038689 TGCATAAAACCTACCGGTGTGA 59.961 45.455 19.93 0.00 44.73 3.58
2021 2223 1.816863 CTACCGGTGTGAGTGCCACT 61.817 60.000 19.93 0.00 45.86 4.00
2022 2224 2.094757 TACCGGTGTGAGTGCCACTG 62.095 60.000 19.93 0.00 45.86 3.66
2023 2225 3.349006 CGGTGTGAGTGCCACTGC 61.349 66.667 0.00 0.00 45.86 4.40
2047 2273 2.099756 GGGTGATTCTGCAAATGCCTAC 59.900 50.000 2.46 0.00 41.18 3.18
2054 2280 1.741706 CTGCAAATGCCTACTGGAGTG 59.258 52.381 2.46 0.00 41.18 3.51
2062 2288 0.108615 CCTACTGGAGTGCGGAGTTG 60.109 60.000 0.00 0.00 34.57 3.16
2071 2297 2.046108 TGCGGAGTTGCAGTAGTCA 58.954 52.632 0.00 0.00 40.62 3.41
2096 2323 6.529125 ACTGAAAAGAAATATGAAATGCAGCG 59.471 34.615 0.00 0.00 0.00 5.18
2113 2340 3.372730 GGCTGCCCGCAATTCACA 61.373 61.111 7.66 0.00 41.67 3.58
2114 2341 2.650196 GCTGCCCGCAATTCACAA 59.350 55.556 0.00 0.00 38.92 3.33
2122 2349 3.858877 GCCCGCAATTCACAATGTAAACA 60.859 43.478 0.00 0.00 0.00 2.83
2129 2356 7.201291 CGCAATTCACAATGTAAACAGAAGATG 60.201 37.037 0.00 0.00 0.00 2.90
2173 2400 1.993956 TGCAGTGTTGGCAGGTAAAT 58.006 45.000 0.00 0.00 36.11 1.40
2184 2411 6.095300 TGTTGGCAGGTAAATTGATGTGATAG 59.905 38.462 0.00 0.00 0.00 2.08
2185 2412 5.132502 TGGCAGGTAAATTGATGTGATAGG 58.867 41.667 0.00 0.00 0.00 2.57
2189 2416 6.238759 GCAGGTAAATTGATGTGATAGGAACC 60.239 42.308 0.00 0.00 0.00 3.62
2190 2417 6.828273 CAGGTAAATTGATGTGATAGGAACCA 59.172 38.462 0.00 0.00 0.00 3.67
2191 2418 7.339212 CAGGTAAATTGATGTGATAGGAACCAA 59.661 37.037 0.00 0.00 0.00 3.67
2194 2421 7.537596 AAATTGATGTGATAGGAACCAAACA 57.462 32.000 0.00 0.00 0.00 2.83
2210 2437 8.978539 GGAACCAAACAATTAGATCAGAAAAAC 58.021 33.333 0.00 0.00 0.00 2.43
2211 2438 9.528018 GAACCAAACAATTAGATCAGAAAAACA 57.472 29.630 0.00 0.00 0.00 2.83
2241 2468 5.708736 ATGGTGTTACTATTCATCACCCA 57.291 39.130 9.61 0.00 45.27 4.51
2242 2469 5.097742 TGGTGTTACTATTCATCACCCAG 57.902 43.478 9.61 0.00 45.27 4.45
2243 2470 4.080582 TGGTGTTACTATTCATCACCCAGG 60.081 45.833 9.61 0.00 45.27 4.45
2244 2471 4.080526 GGTGTTACTATTCATCACCCAGGT 60.081 45.833 0.00 0.00 41.58 4.00
2245 2472 4.876107 GTGTTACTATTCATCACCCAGGTG 59.124 45.833 10.73 10.73 46.64 4.00
2246 2473 4.080582 TGTTACTATTCATCACCCAGGTGG 60.081 45.833 16.63 2.00 45.43 4.61
2261 2488 5.675684 CCAGGTGGGCAAAATAAGTTATT 57.324 39.130 2.10 2.10 0.00 1.40
2262 2489 5.660460 CCAGGTGGGCAAAATAAGTTATTC 58.340 41.667 8.56 0.00 0.00 1.75
2263 2490 5.422012 CCAGGTGGGCAAAATAAGTTATTCT 59.578 40.000 8.56 0.00 0.00 2.40
2264 2491 6.070824 CCAGGTGGGCAAAATAAGTTATTCTT 60.071 38.462 8.56 3.60 39.89 2.52
2265 2492 7.035612 CAGGTGGGCAAAATAAGTTATTCTTC 58.964 38.462 8.56 1.55 37.56 2.87
2266 2493 6.723977 AGGTGGGCAAAATAAGTTATTCTTCA 59.276 34.615 8.56 1.98 37.56 3.02
2267 2494 6.811665 GGTGGGCAAAATAAGTTATTCTTCAC 59.188 38.462 8.56 11.63 37.56 3.18
2268 2495 6.811665 GTGGGCAAAATAAGTTATTCTTCACC 59.188 38.462 8.56 8.42 37.56 4.02
2269 2496 6.071051 TGGGCAAAATAAGTTATTCTTCACCC 60.071 38.462 8.56 14.05 37.56 4.61
2270 2497 6.071051 GGGCAAAATAAGTTATTCTTCACCCA 60.071 38.462 18.26 0.00 37.56 4.51
2271 2498 7.382898 GGCAAAATAAGTTATTCTTCACCCAA 58.617 34.615 8.56 0.00 37.56 4.12
2272 2499 7.545615 GGCAAAATAAGTTATTCTTCACCCAAG 59.454 37.037 8.56 0.00 37.56 3.61
2273 2500 7.545615 GCAAAATAAGTTATTCTTCACCCAAGG 59.454 37.037 8.56 0.00 37.56 3.61
2274 2501 8.585018 CAAAATAAGTTATTCTTCACCCAAGGT 58.415 33.333 8.56 0.00 37.56 3.50
2275 2502 9.816787 AAAATAAGTTATTCTTCACCCAAGGTA 57.183 29.630 8.56 0.00 37.56 3.08
2276 2503 9.816787 AAATAAGTTATTCTTCACCCAAGGTAA 57.183 29.630 8.56 0.00 37.56 2.85
2277 2504 9.990868 AATAAGTTATTCTTCACCCAAGGTAAT 57.009 29.630 2.10 0.00 37.56 1.89
2278 2505 9.990868 ATAAGTTATTCTTCACCCAAGGTAATT 57.009 29.630 0.00 0.00 37.56 1.40
2279 2506 8.721133 AAGTTATTCTTCACCCAAGGTAATTT 57.279 30.769 0.00 0.00 32.11 1.82
2280 2507 8.721133 AGTTATTCTTCACCCAAGGTAATTTT 57.279 30.769 0.00 0.00 32.11 1.82
2281 2508 9.816787 AGTTATTCTTCACCCAAGGTAATTTTA 57.183 29.630 0.00 0.00 32.11 1.52
2282 2509 9.850628 GTTATTCTTCACCCAAGGTAATTTTAC 57.149 33.333 0.00 0.00 32.11 2.01
2283 2510 6.563222 TTCTTCACCCAAGGTAATTTTACG 57.437 37.500 0.00 0.00 32.11 3.18
2284 2511 5.867330 TCTTCACCCAAGGTAATTTTACGA 58.133 37.500 0.00 0.00 32.11 3.43
2285 2512 6.478129 TCTTCACCCAAGGTAATTTTACGAT 58.522 36.000 0.00 0.00 32.11 3.73
2286 2513 6.596497 TCTTCACCCAAGGTAATTTTACGATC 59.404 38.462 0.00 0.00 32.11 3.69
2287 2514 4.871557 TCACCCAAGGTAATTTTACGATCG 59.128 41.667 14.88 14.88 32.11 3.69
2288 2515 4.632688 CACCCAAGGTAATTTTACGATCGT 59.367 41.667 25.94 25.94 32.11 3.73
2289 2516 5.122711 CACCCAAGGTAATTTTACGATCGTT 59.877 40.000 27.88 10.55 32.11 3.85
2290 2517 5.706833 ACCCAAGGTAATTTTACGATCGTTT 59.293 36.000 27.88 16.67 32.11 3.60
2291 2518 6.128200 ACCCAAGGTAATTTTACGATCGTTTC 60.128 38.462 27.88 5.50 32.11 2.78
2292 2519 6.128227 CCCAAGGTAATTTTACGATCGTTTCA 60.128 38.462 27.88 10.69 34.50 2.69
2293 2520 7.414762 CCCAAGGTAATTTTACGATCGTTTCAT 60.415 37.037 27.88 12.58 34.50 2.57
2294 2521 8.605746 CCAAGGTAATTTTACGATCGTTTCATA 58.394 33.333 27.88 4.54 34.50 2.15
2295 2522 9.976255 CAAGGTAATTTTACGATCGTTTCATAA 57.024 29.630 27.88 11.38 34.50 1.90
2398 2625 6.749923 AGGTCATAAGATGAGAAAAGTTGC 57.250 37.500 0.00 0.00 40.53 4.17
2399 2626 6.240894 AGGTCATAAGATGAGAAAAGTTGCA 58.759 36.000 0.00 0.00 40.53 4.08
2400 2627 6.888632 AGGTCATAAGATGAGAAAAGTTGCAT 59.111 34.615 0.00 0.00 40.53 3.96
2401 2628 7.395489 AGGTCATAAGATGAGAAAAGTTGCATT 59.605 33.333 0.00 0.00 40.53 3.56
2402 2629 8.031277 GGTCATAAGATGAGAAAAGTTGCATTT 58.969 33.333 0.00 0.00 40.53 2.32
2403 2630 9.415544 GTCATAAGATGAGAAAAGTTGCATTTT 57.584 29.630 0.00 0.00 40.53 1.82
2485 2712 8.659569 TTACGGCGACTATATATTTTCTTACG 57.340 34.615 16.62 0.00 0.00 3.18
2486 2713 6.902341 ACGGCGACTATATATTTTCTTACGA 58.098 36.000 16.62 0.00 0.00 3.43
2487 2714 7.362662 ACGGCGACTATATATTTTCTTACGAA 58.637 34.615 16.62 0.00 0.00 3.85
2488 2715 7.324616 ACGGCGACTATATATTTTCTTACGAAC 59.675 37.037 16.62 0.00 0.00 3.95
2489 2716 7.536622 CGGCGACTATATATTTTCTTACGAACT 59.463 37.037 0.00 0.00 0.00 3.01
2490 2717 9.831737 GGCGACTATATATTTTCTTACGAACTA 57.168 33.333 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.551890 CCATGTGTAGTGCTCGTTCATAC 59.448 47.826 0.00 0.00 0.00 2.39
1 2 3.445805 TCCATGTGTAGTGCTCGTTCATA 59.554 43.478 0.00 0.00 0.00 2.15
2 3 2.233676 TCCATGTGTAGTGCTCGTTCAT 59.766 45.455 0.00 0.00 0.00 2.57
3 4 1.616374 TCCATGTGTAGTGCTCGTTCA 59.384 47.619 0.00 0.00 0.00 3.18
4 5 1.993370 GTCCATGTGTAGTGCTCGTTC 59.007 52.381 0.00 0.00 0.00 3.95
5 6 1.343142 TGTCCATGTGTAGTGCTCGTT 59.657 47.619 0.00 0.00 0.00 3.85
6 7 0.966179 TGTCCATGTGTAGTGCTCGT 59.034 50.000 0.00 0.00 0.00 4.18
7 8 1.067565 ACTGTCCATGTGTAGTGCTCG 60.068 52.381 0.00 0.00 0.00 5.03
8 9 2.289072 ACACTGTCCATGTGTAGTGCTC 60.289 50.000 15.99 0.00 45.49 4.26
9 10 1.694150 ACACTGTCCATGTGTAGTGCT 59.306 47.619 15.99 5.59 45.49 4.40
10 11 1.800586 CACACTGTCCATGTGTAGTGC 59.199 52.381 15.99 0.00 45.56 4.40
11 12 3.385193 TCACACTGTCCATGTGTAGTG 57.615 47.619 15.00 15.00 45.56 2.74
12 13 3.133901 TGTTCACACTGTCCATGTGTAGT 59.866 43.478 5.14 0.00 45.56 2.73
13 14 3.727726 TGTTCACACTGTCCATGTGTAG 58.272 45.455 5.14 0.00 45.56 2.74
14 15 3.828875 TGTTCACACTGTCCATGTGTA 57.171 42.857 5.14 0.00 45.56 2.90
17 18 3.281727 ACTTGTTCACACTGTCCATGT 57.718 42.857 0.00 0.00 0.00 3.21
18 19 4.380531 AGTACTTGTTCACACTGTCCATG 58.619 43.478 0.00 0.00 0.00 3.66
19 20 4.689612 AGTACTTGTTCACACTGTCCAT 57.310 40.909 0.00 0.00 0.00 3.41
20 21 4.403113 TGTAGTACTTGTTCACACTGTCCA 59.597 41.667 0.00 0.00 0.00 4.02
21 22 4.743644 GTGTAGTACTTGTTCACACTGTCC 59.256 45.833 15.54 0.00 37.20 4.02
22 23 5.345702 TGTGTAGTACTTGTTCACACTGTC 58.654 41.667 20.85 2.17 40.08 3.51
23 24 5.333299 TGTGTAGTACTTGTTCACACTGT 57.667 39.130 20.85 0.00 40.08 3.55
24 25 5.810587 ACTTGTGTAGTACTTGTTCACACTG 59.189 40.000 20.85 16.61 40.08 3.66
25 26 5.974108 ACTTGTGTAGTACTTGTTCACACT 58.026 37.500 20.85 4.53 40.08 3.55
37 38 5.247862 TGATCCGTCTGTACTTGTGTAGTA 58.752 41.667 0.00 0.00 38.33 1.82
38 39 4.077108 TGATCCGTCTGTACTTGTGTAGT 58.923 43.478 0.00 0.00 41.04 2.73
39 40 4.696899 TGATCCGTCTGTACTTGTGTAG 57.303 45.455 0.00 0.00 0.00 2.74
40 41 4.948004 AGATGATCCGTCTGTACTTGTGTA 59.052 41.667 0.00 0.00 0.00 2.90
41 42 3.764434 AGATGATCCGTCTGTACTTGTGT 59.236 43.478 0.00 0.00 0.00 3.72
42 43 4.377839 AGATGATCCGTCTGTACTTGTG 57.622 45.455 0.00 0.00 0.00 3.33
43 44 5.194432 ACTAGATGATCCGTCTGTACTTGT 58.806 41.667 0.00 0.00 31.62 3.16
44 45 5.759506 ACTAGATGATCCGTCTGTACTTG 57.240 43.478 0.00 0.00 31.62 3.16
45 46 5.886474 TGAACTAGATGATCCGTCTGTACTT 59.114 40.000 0.00 0.00 31.62 2.24
46 47 5.437946 TGAACTAGATGATCCGTCTGTACT 58.562 41.667 0.00 0.00 31.62 2.73
47 48 5.752892 TGAACTAGATGATCCGTCTGTAC 57.247 43.478 0.00 0.00 31.62 2.90
48 49 5.886474 AGTTGAACTAGATGATCCGTCTGTA 59.114 40.000 0.00 0.00 31.62 2.74
49 50 4.707448 AGTTGAACTAGATGATCCGTCTGT 59.293 41.667 0.00 2.71 31.62 3.41
50 51 5.163612 TGAGTTGAACTAGATGATCCGTCTG 60.164 44.000 0.00 2.23 31.62 3.51
51 52 4.950475 TGAGTTGAACTAGATGATCCGTCT 59.050 41.667 0.00 3.56 33.90 4.18
52 53 5.250235 TGAGTTGAACTAGATGATCCGTC 57.750 43.478 0.00 0.00 0.00 4.79
53 54 4.440802 GCTGAGTTGAACTAGATGATCCGT 60.441 45.833 0.00 0.00 0.00 4.69
54 55 4.047822 GCTGAGTTGAACTAGATGATCCG 58.952 47.826 0.00 0.00 0.00 4.18
55 56 5.016051 TGCTGAGTTGAACTAGATGATCC 57.984 43.478 0.00 0.00 0.00 3.36
56 57 4.507388 GCTGCTGAGTTGAACTAGATGATC 59.493 45.833 0.00 0.00 0.00 2.92
57 58 4.081254 TGCTGCTGAGTTGAACTAGATGAT 60.081 41.667 0.00 0.00 0.00 2.45
58 59 3.259123 TGCTGCTGAGTTGAACTAGATGA 59.741 43.478 0.00 0.00 0.00 2.92
59 60 3.593096 TGCTGCTGAGTTGAACTAGATG 58.407 45.455 0.00 0.00 0.00 2.90
60 61 3.969287 TGCTGCTGAGTTGAACTAGAT 57.031 42.857 0.00 0.00 0.00 1.98
61 62 3.969287 ATGCTGCTGAGTTGAACTAGA 57.031 42.857 0.00 0.00 0.00 2.43
62 63 3.549471 CGTATGCTGCTGAGTTGAACTAG 59.451 47.826 0.00 0.00 0.00 2.57
63 64 3.192633 TCGTATGCTGCTGAGTTGAACTA 59.807 43.478 0.00 0.00 0.00 2.24
64 65 2.029020 TCGTATGCTGCTGAGTTGAACT 60.029 45.455 0.00 0.00 0.00 3.01
65 66 2.337583 TCGTATGCTGCTGAGTTGAAC 58.662 47.619 0.00 0.00 0.00 3.18
66 67 2.741759 TCGTATGCTGCTGAGTTGAA 57.258 45.000 0.00 0.00 0.00 2.69
67 68 2.741759 TTCGTATGCTGCTGAGTTGA 57.258 45.000 0.00 0.00 0.00 3.18
68 69 2.674852 ACATTCGTATGCTGCTGAGTTG 59.325 45.455 1.46 0.00 35.03 3.16
69 70 2.977914 ACATTCGTATGCTGCTGAGTT 58.022 42.857 1.46 0.00 35.03 3.01
70 71 2.680312 ACATTCGTATGCTGCTGAGT 57.320 45.000 1.46 0.00 35.03 3.41
71 72 3.193263 AGAACATTCGTATGCTGCTGAG 58.807 45.455 1.46 0.00 35.03 3.35
72 73 3.251479 AGAACATTCGTATGCTGCTGA 57.749 42.857 1.46 0.00 35.03 4.26
73 74 4.346734 AAAGAACATTCGTATGCTGCTG 57.653 40.909 1.46 0.00 35.03 4.41
74 75 6.540189 AGATTAAAGAACATTCGTATGCTGCT 59.460 34.615 1.46 0.00 35.03 4.24
75 76 6.719365 AGATTAAAGAACATTCGTATGCTGC 58.281 36.000 1.46 0.00 35.03 5.25
76 77 7.909267 TGAGATTAAAGAACATTCGTATGCTG 58.091 34.615 1.46 0.00 35.03 4.41
77 78 8.492673 TTGAGATTAAAGAACATTCGTATGCT 57.507 30.769 1.46 0.00 35.03 3.79
78 79 9.214953 CTTTGAGATTAAAGAACATTCGTATGC 57.785 33.333 1.46 0.00 39.46 3.14
79 80 9.214953 GCTTTGAGATTAAAGAACATTCGTATG 57.785 33.333 0.00 0.00 39.46 2.39
80 81 8.946085 TGCTTTGAGATTAAAGAACATTCGTAT 58.054 29.630 1.61 0.00 39.46 3.06
81 82 8.317891 TGCTTTGAGATTAAAGAACATTCGTA 57.682 30.769 1.61 0.00 39.46 3.43
82 83 7.202016 TGCTTTGAGATTAAAGAACATTCGT 57.798 32.000 1.61 0.00 39.46 3.85
83 84 7.253552 GCATGCTTTGAGATTAAAGAACATTCG 60.254 37.037 11.37 0.00 39.46 3.34
84 85 7.009907 GGCATGCTTTGAGATTAAAGAACATTC 59.990 37.037 18.92 0.00 39.46 2.67
85 86 6.815142 GGCATGCTTTGAGATTAAAGAACATT 59.185 34.615 18.92 0.00 39.46 2.71
86 87 6.071221 TGGCATGCTTTGAGATTAAAGAACAT 60.071 34.615 18.92 0.00 39.46 2.71
87 88 5.243507 TGGCATGCTTTGAGATTAAAGAACA 59.756 36.000 18.92 0.00 39.46 3.18
88 89 5.713025 TGGCATGCTTTGAGATTAAAGAAC 58.287 37.500 18.92 0.00 39.46 3.01
89 90 5.981088 TGGCATGCTTTGAGATTAAAGAA 57.019 34.783 18.92 0.00 39.46 2.52
90 91 5.105635 CCTTGGCATGCTTTGAGATTAAAGA 60.106 40.000 18.92 0.00 39.46 2.52
91 92 5.105635 TCCTTGGCATGCTTTGAGATTAAAG 60.106 40.000 18.92 6.08 39.95 1.85
92 93 4.771577 TCCTTGGCATGCTTTGAGATTAAA 59.228 37.500 18.92 0.00 0.00 1.52
93 94 4.343231 TCCTTGGCATGCTTTGAGATTAA 58.657 39.130 18.92 0.00 0.00 1.40
94 95 3.949754 CTCCTTGGCATGCTTTGAGATTA 59.050 43.478 18.92 0.00 0.00 1.75
95 96 2.758979 CTCCTTGGCATGCTTTGAGATT 59.241 45.455 18.92 0.00 0.00 2.40
96 97 2.291411 ACTCCTTGGCATGCTTTGAGAT 60.291 45.455 23.79 11.87 0.00 2.75
97 98 1.074405 ACTCCTTGGCATGCTTTGAGA 59.926 47.619 23.79 13.09 0.00 3.27
98 99 1.542492 ACTCCTTGGCATGCTTTGAG 58.458 50.000 18.92 18.78 0.00 3.02
99 100 1.888512 GAACTCCTTGGCATGCTTTGA 59.111 47.619 18.92 8.44 0.00 2.69
100 101 1.614903 TGAACTCCTTGGCATGCTTTG 59.385 47.619 18.92 7.47 0.00 2.77
101 102 1.999648 TGAACTCCTTGGCATGCTTT 58.000 45.000 18.92 0.00 0.00 3.51
102 103 1.615392 GTTGAACTCCTTGGCATGCTT 59.385 47.619 18.92 1.09 0.00 3.91
103 104 1.251251 GTTGAACTCCTTGGCATGCT 58.749 50.000 18.92 0.00 0.00 3.79
104 105 0.961019 TGTTGAACTCCTTGGCATGC 59.039 50.000 9.90 9.90 0.00 4.06
105 106 3.731652 TTTGTTGAACTCCTTGGCATG 57.268 42.857 0.00 0.00 0.00 4.06
106 107 3.706086 AGTTTTGTTGAACTCCTTGGCAT 59.294 39.130 0.00 0.00 34.94 4.40
107 108 3.096092 AGTTTTGTTGAACTCCTTGGCA 58.904 40.909 0.00 0.00 34.94 4.92
108 109 3.801114 AGTTTTGTTGAACTCCTTGGC 57.199 42.857 0.00 0.00 34.94 4.52
109 110 4.642885 TGGTAGTTTTGTTGAACTCCTTGG 59.357 41.667 0.00 0.00 40.24 3.61
124 125 2.305928 TGCAAGCATGTGTGGTAGTTT 58.694 42.857 0.00 0.00 34.36 2.66
125 126 1.979855 TGCAAGCATGTGTGGTAGTT 58.020 45.000 0.00 0.00 34.36 2.24
174 175 1.208535 CTAGTGGTGGCGGATTGGTAA 59.791 52.381 0.00 0.00 0.00 2.85
182 183 2.107141 GCTAGCTAGTGGTGGCGG 59.893 66.667 21.62 0.00 38.31 6.13
184 185 1.134401 TGATTGCTAGCTAGTGGTGGC 60.134 52.381 21.62 7.97 46.19 5.01
220 221 5.130311 TGGATTTGTAGCATGCTAGGAGTTA 59.870 40.000 27.54 10.41 0.00 2.24
226 227 4.214971 GGTGATGGATTTGTAGCATGCTAG 59.785 45.833 27.54 0.00 0.00 3.42
240 241 5.455326 GGATTTGTAGCTAGTGGTGATGGAT 60.455 44.000 0.00 0.00 0.00 3.41
241 242 4.141711 GGATTTGTAGCTAGTGGTGATGGA 60.142 45.833 0.00 0.00 0.00 3.41
242 243 4.130118 GGATTTGTAGCTAGTGGTGATGG 58.870 47.826 0.00 0.00 0.00 3.51
243 244 4.769688 TGGATTTGTAGCTAGTGGTGATG 58.230 43.478 0.00 0.00 0.00 3.07
244 245 5.130975 TGATGGATTTGTAGCTAGTGGTGAT 59.869 40.000 0.00 0.00 0.00 3.06
245 246 4.469586 TGATGGATTTGTAGCTAGTGGTGA 59.530 41.667 0.00 0.00 0.00 4.02
246 247 4.572389 GTGATGGATTTGTAGCTAGTGGTG 59.428 45.833 0.00 0.00 0.00 4.17
247 248 4.384208 GGTGATGGATTTGTAGCTAGTGGT 60.384 45.833 0.00 0.00 0.00 4.16
248 249 4.130118 GGTGATGGATTTGTAGCTAGTGG 58.870 47.826 0.00 0.00 0.00 4.00
249 250 4.572389 GTGGTGATGGATTTGTAGCTAGTG 59.428 45.833 0.00 0.00 0.00 2.74
250 251 4.471386 AGTGGTGATGGATTTGTAGCTAGT 59.529 41.667 0.00 0.00 0.00 2.57
251 252 5.028549 AGTGGTGATGGATTTGTAGCTAG 57.971 43.478 0.00 0.00 0.00 3.42
252 253 5.453339 GCTAGTGGTGATGGATTTGTAGCTA 60.453 44.000 0.00 0.00 0.00 3.32
253 254 4.684485 GCTAGTGGTGATGGATTTGTAGCT 60.684 45.833 0.00 0.00 0.00 3.32
254 255 3.561725 GCTAGTGGTGATGGATTTGTAGC 59.438 47.826 0.00 0.00 0.00 3.58
255 256 5.028549 AGCTAGTGGTGATGGATTTGTAG 57.971 43.478 0.00 0.00 0.00 2.74
256 257 5.163343 GGTAGCTAGTGGTGATGGATTTGTA 60.163 44.000 0.00 0.00 0.00 2.41
257 258 4.384208 GGTAGCTAGTGGTGATGGATTTGT 60.384 45.833 0.00 0.00 0.00 2.83
258 259 4.130118 GGTAGCTAGTGGTGATGGATTTG 58.870 47.826 0.00 0.00 0.00 2.32
259 260 3.780294 TGGTAGCTAGTGGTGATGGATTT 59.220 43.478 0.00 0.00 0.00 2.17
260 261 3.384168 TGGTAGCTAGTGGTGATGGATT 58.616 45.455 0.00 0.00 0.00 3.01
261 262 2.968574 CTGGTAGCTAGTGGTGATGGAT 59.031 50.000 0.00 0.00 0.00 3.41
290 291 7.864882 ACTGTACATTGTCGATCTATGAGAATG 59.135 37.037 13.74 13.74 46.67 2.67
298 299 4.983671 AGCACTGTACATTGTCGATCTA 57.016 40.909 13.98 0.00 0.00 1.98
306 307 2.674852 CTGTGGCTAGCACTGTACATTG 59.325 50.000 18.24 8.77 0.00 2.82
345 346 8.582437 TCTCTACTTACTCACTCTAGCTAGATC 58.418 40.741 23.48 0.00 0.00 2.75
350 351 5.664006 TCCTCTCTACTTACTCACTCTAGCT 59.336 44.000 0.00 0.00 0.00 3.32
355 356 4.457466 CCCTCCTCTCTACTTACTCACTC 58.543 52.174 0.00 0.00 0.00 3.51
360 361 2.245287 CACCCCCTCCTCTCTACTTACT 59.755 54.545 0.00 0.00 0.00 2.24
373 374 2.115343 GTGAGTTCAATCACCCCCTC 57.885 55.000 0.00 0.00 43.12 4.30
384 386 2.076100 GCATCGATGGTTGTGAGTTCA 58.924 47.619 26.00 0.00 0.00 3.18
399 401 2.764314 CCTCCTTTTGGCCGCATCG 61.764 63.158 0.00 0.00 40.12 3.84
409 411 0.890996 CCTGTTCTGCGCCTCCTTTT 60.891 55.000 4.18 0.00 0.00 2.27
410 412 1.302832 CCTGTTCTGCGCCTCCTTT 60.303 57.895 4.18 0.00 0.00 3.11
421 423 3.430453 CTCCTCTTCTCTGACCTGTTCT 58.570 50.000 0.00 0.00 0.00 3.01
425 427 2.099405 GTCCTCCTCTTCTCTGACCTG 58.901 57.143 0.00 0.00 0.00 4.00
476 478 1.153628 TAAGCGGCGCTTCTTCTCC 60.154 57.895 45.55 8.98 46.77 3.71
515 517 0.804989 GGTCACCTTCTGCCGATTTG 59.195 55.000 0.00 0.00 0.00 2.32
516 518 0.322546 GGGTCACCTTCTGCCGATTT 60.323 55.000 0.00 0.00 0.00 2.17
545 627 6.974932 TGCATGTCTTTTAAAAAGCAACAA 57.025 29.167 1.66 0.00 0.00 2.83
546 628 6.074409 CGATGCATGTCTTTTAAAAAGCAACA 60.074 34.615 2.46 5.13 34.15 3.33
557 639 0.729116 CGAGCCGATGCATGTCTTTT 59.271 50.000 2.46 0.00 41.13 2.27
558 640 0.391661 ACGAGCCGATGCATGTCTTT 60.392 50.000 2.46 0.00 41.13 2.52
587 669 3.023949 GCTGACCTCCTGCGACCAT 62.024 63.158 0.00 0.00 0.00 3.55
601 683 1.579932 GAGAGGAACACGACGCTGA 59.420 57.895 0.00 0.00 0.00 4.26
616 698 3.214253 CAGGCGATGCAGAGGAGA 58.786 61.111 0.00 0.00 0.00 3.71
638 720 3.961414 TTCACCCGTTCCCCCAGC 61.961 66.667 0.00 0.00 0.00 4.85
640 726 3.572222 GGTTCACCCGTTCCCCCA 61.572 66.667 0.00 0.00 0.00 4.96
656 742 0.105039 GGCCTGATAGGAACACTCGG 59.895 60.000 0.00 0.00 37.67 4.63
660 746 2.103263 CACCTAGGCCTGATAGGAACAC 59.897 54.545 24.39 0.00 42.15 3.32
661 747 2.398588 CACCTAGGCCTGATAGGAACA 58.601 52.381 24.39 0.00 42.15 3.18
669 755 0.909610 CACTTCCCACCTAGGCCTGA 60.910 60.000 17.99 0.00 35.39 3.86
671 757 1.616628 CCACTTCCCACCTAGGCCT 60.617 63.158 11.78 11.78 35.39 5.19
674 760 3.329814 ACTTAAACCACTTCCCACCTAGG 59.670 47.826 7.41 7.41 37.03 3.02
679 765 2.551032 CGGAACTTAAACCACTTCCCAC 59.449 50.000 0.00 0.00 30.10 4.61
685 771 2.632987 AGCACGGAACTTAAACCACT 57.367 45.000 0.00 0.00 0.00 4.00
700 786 1.338020 ACTGTTTAGCCTGCAAAGCAC 59.662 47.619 10.73 1.60 33.79 4.40
705 791 4.038522 TGCATTTTACTGTTTAGCCTGCAA 59.961 37.500 0.00 0.00 34.48 4.08
713 799 5.626142 TCCCTGTCTGCATTTTACTGTTTA 58.374 37.500 0.00 0.00 0.00 2.01
721 807 2.232941 CTGCATTCCCTGTCTGCATTTT 59.767 45.455 0.00 0.00 44.25 1.82
722 808 1.822990 CTGCATTCCCTGTCTGCATTT 59.177 47.619 0.00 0.00 44.25 2.32
723 809 1.471119 CTGCATTCCCTGTCTGCATT 58.529 50.000 0.00 0.00 44.25 3.56
724 810 0.395311 CCTGCATTCCCTGTCTGCAT 60.395 55.000 0.00 0.00 44.25 3.96
725 811 1.001764 CCTGCATTCCCTGTCTGCA 60.002 57.895 0.00 0.00 43.20 4.41
726 812 2.413142 GCCTGCATTCCCTGTCTGC 61.413 63.158 0.00 0.00 36.45 4.26
727 813 0.609957 TTGCCTGCATTCCCTGTCTG 60.610 55.000 0.00 0.00 0.00 3.51
728 814 0.610232 GTTGCCTGCATTCCCTGTCT 60.610 55.000 0.00 0.00 0.00 3.41
729 815 1.598701 GGTTGCCTGCATTCCCTGTC 61.599 60.000 0.00 0.00 0.00 3.51
730 816 1.607467 GGTTGCCTGCATTCCCTGT 60.607 57.895 0.00 0.00 0.00 4.00
731 817 1.186917 TTGGTTGCCTGCATTCCCTG 61.187 55.000 10.05 0.00 0.00 4.45
732 818 0.471591 TTTGGTTGCCTGCATTCCCT 60.472 50.000 10.05 0.00 0.00 4.20
733 819 0.320683 GTTTGGTTGCCTGCATTCCC 60.321 55.000 10.05 4.43 0.00 3.97
734 820 0.667184 CGTTTGGTTGCCTGCATTCC 60.667 55.000 0.00 0.00 0.00 3.01
766 852 1.520666 CCAAGTAGGTTCGGGCGAT 59.479 57.895 0.00 0.00 0.00 4.58
771 857 1.481871 TAGAGCCCAAGTAGGTTCGG 58.518 55.000 0.00 0.00 41.69 4.30
774 860 2.171448 CTGCATAGAGCCCAAGTAGGTT 59.829 50.000 0.00 0.00 44.83 3.50
775 861 1.765314 CTGCATAGAGCCCAAGTAGGT 59.235 52.381 0.00 0.00 44.83 3.08
780 866 3.181451 TGATTACCTGCATAGAGCCCAAG 60.181 47.826 0.00 0.00 44.83 3.61
789 875 8.412456 CCAAATATGTGTTTGATTACCTGCATA 58.588 33.333 4.11 0.00 40.64 3.14
808 894 4.578928 GTGGTTGTATCTTCGGCCAAATAT 59.421 41.667 2.24 0.00 0.00 1.28
810 896 2.752903 GTGGTTGTATCTTCGGCCAAAT 59.247 45.455 2.24 0.00 0.00 2.32
811 897 2.156098 GTGGTTGTATCTTCGGCCAAA 58.844 47.619 2.24 0.00 0.00 3.28
812 898 1.816074 GTGGTTGTATCTTCGGCCAA 58.184 50.000 2.24 0.00 0.00 4.52
823 912 3.980646 AGTAACACGTACGTGGTTGTA 57.019 42.857 41.62 27.59 44.62 2.41
828 917 5.063944 ACTACTGATAGTAACACGTACGTGG 59.936 44.000 41.62 27.63 43.69 4.94
838 984 5.269313 GTGGTACGCACTACTGATAGTAAC 58.731 45.833 7.10 0.00 39.80 2.50
1052 1206 2.127609 GCTTTCGTGTGCTGCGTC 60.128 61.111 0.00 0.00 0.00 5.19
1086 1243 2.441532 ATGGTGGCTGCCATGCTC 60.442 61.111 26.22 11.70 46.63 4.26
1162 1325 2.712539 CGTGCGTGGTTGAAAGCA 59.287 55.556 0.00 0.00 37.26 3.91
1163 1326 2.725815 GCGTGCGTGGTTGAAAGC 60.726 61.111 0.00 0.00 0.00 3.51
1164 1327 1.082756 GAGCGTGCGTGGTTGAAAG 60.083 57.895 0.00 0.00 0.00 2.62
1165 1328 2.876879 CGAGCGTGCGTGGTTGAAA 61.877 57.895 0.00 0.00 0.00 2.69
1440 1608 2.154427 GAACGCGTGTGGTGCAGTAC 62.154 60.000 14.98 0.00 0.00 2.73
1475 1650 7.571244 GCTTTATTGAACTCAAACACGAGATCA 60.571 37.037 0.00 0.00 41.45 2.92
1517 1698 3.305335 GCCATTCCATTCGTCAGTTGTTT 60.305 43.478 0.00 0.00 0.00 2.83
1527 1708 2.988493 CACAAACTTGCCATTCCATTCG 59.012 45.455 0.00 0.00 0.00 3.34
1549 1735 7.775093 CCAATCAGTTCATTACTTATTCCAGGA 59.225 37.037 0.00 0.00 33.85 3.86
1568 1754 4.510167 AATCCAGGTAGGTTCCAATCAG 57.490 45.455 0.00 0.00 39.02 2.90
1578 1764 4.455606 GACATCTTCCAAATCCAGGTAGG 58.544 47.826 0.00 0.00 39.47 3.18
1580 1766 3.118408 CGGACATCTTCCAAATCCAGGTA 60.118 47.826 0.00 0.00 46.29 3.08
1612 1798 3.066900 TCCGGACATCTTTTTCGCAAAAA 59.933 39.130 0.00 0.80 37.99 1.94
1613 1799 2.619177 TCCGGACATCTTTTTCGCAAAA 59.381 40.909 0.00 0.00 0.00 2.44
1614 1800 2.222886 TCCGGACATCTTTTTCGCAAA 58.777 42.857 0.00 0.00 0.00 3.68
1615 1801 1.885560 TCCGGACATCTTTTTCGCAA 58.114 45.000 0.00 0.00 0.00 4.85
1616 1802 1.885560 TTCCGGACATCTTTTTCGCA 58.114 45.000 1.83 0.00 0.00 5.10
1617 1803 2.225727 AGTTTCCGGACATCTTTTTCGC 59.774 45.455 1.83 0.00 0.00 4.70
1618 1804 4.024387 TCAAGTTTCCGGACATCTTTTTCG 60.024 41.667 1.83 0.00 0.00 3.46
1619 1805 5.432885 TCAAGTTTCCGGACATCTTTTTC 57.567 39.130 1.83 0.00 0.00 2.29
1620 1806 5.588240 GTTCAAGTTTCCGGACATCTTTTT 58.412 37.500 1.83 0.00 0.00 1.94
1621 1807 4.261031 CGTTCAAGTTTCCGGACATCTTTT 60.261 41.667 1.83 0.00 0.00 2.27
1622 1808 3.250040 CGTTCAAGTTTCCGGACATCTTT 59.750 43.478 1.83 0.00 0.00 2.52
1623 1809 2.806244 CGTTCAAGTTTCCGGACATCTT 59.194 45.455 1.83 6.39 0.00 2.40
1624 1810 2.413837 CGTTCAAGTTTCCGGACATCT 58.586 47.619 1.83 0.00 0.00 2.90
1625 1811 1.136057 GCGTTCAAGTTTCCGGACATC 60.136 52.381 1.83 0.00 0.00 3.06
1626 1812 0.872388 GCGTTCAAGTTTCCGGACAT 59.128 50.000 1.83 0.00 0.00 3.06
1627 1813 0.462225 TGCGTTCAAGTTTCCGGACA 60.462 50.000 1.83 0.00 0.00 4.02
1628 1814 0.041576 GTGCGTTCAAGTTTCCGGAC 60.042 55.000 1.83 0.00 34.68 4.79
1629 1815 0.179067 AGTGCGTTCAAGTTTCCGGA 60.179 50.000 0.00 0.00 0.00 5.14
1630 1816 0.041312 CAGTGCGTTCAAGTTTCCGG 60.041 55.000 0.00 0.00 0.00 5.14
1631 1817 0.655733 ACAGTGCGTTCAAGTTTCCG 59.344 50.000 0.00 0.00 0.00 4.30
1632 1818 1.002792 GGACAGTGCGTTCAAGTTTCC 60.003 52.381 0.00 0.00 0.00 3.13
1633 1819 1.668751 TGGACAGTGCGTTCAAGTTTC 59.331 47.619 0.00 0.00 26.45 2.78
1634 1820 1.745232 TGGACAGTGCGTTCAAGTTT 58.255 45.000 0.00 0.00 26.45 2.66
1635 1821 1.745232 TTGGACAGTGCGTTCAAGTT 58.255 45.000 0.00 0.00 38.25 2.66
1636 1822 3.469564 TTGGACAGTGCGTTCAAGT 57.530 47.368 0.00 0.00 38.25 3.16
1638 1824 0.179234 TCCTTGGACAGTGCGTTCAA 59.821 50.000 0.00 0.00 41.06 2.69
1639 1825 0.396435 ATCCTTGGACAGTGCGTTCA 59.604 50.000 0.00 0.00 0.00 3.18
1651 1837 4.219070 TGCAATCTGTCTTTTCATCCTTGG 59.781 41.667 0.00 0.00 0.00 3.61
1667 1853 5.754890 GTGAAAACTGAAACCAATGCAATCT 59.245 36.000 0.00 0.00 0.00 2.40
1696 1882 6.652481 GTCATGATGAGGATGGTTAAGGTATG 59.348 42.308 0.00 0.00 0.00 2.39
1720 1906 3.458189 CAGAGAACAGAAACAACTCCGT 58.542 45.455 0.00 0.00 0.00 4.69
1721 1907 2.802816 CCAGAGAACAGAAACAACTCCG 59.197 50.000 0.00 0.00 0.00 4.63
1733 1919 2.439409 CCATGCACAATCCAGAGAACA 58.561 47.619 0.00 0.00 0.00 3.18
1745 1931 0.107557 ATCACGATGAGCCATGCACA 60.108 50.000 0.00 0.00 33.26 4.57
1751 1937 2.433970 TGTATCCAATCACGATGAGCCA 59.566 45.455 0.00 0.00 0.00 4.75
1770 1956 4.833478 ATTGCCTCAGTGTTCTCTATGT 57.167 40.909 0.00 0.00 0.00 2.29
1775 1961 4.579869 TCCTTTATTGCCTCAGTGTTCTC 58.420 43.478 0.00 0.00 0.00 2.87
1777 1963 4.156739 CCTTCCTTTATTGCCTCAGTGTTC 59.843 45.833 0.00 0.00 0.00 3.18
1783 1969 3.309121 CCTTCCCTTCCTTTATTGCCTCA 60.309 47.826 0.00 0.00 0.00 3.86
1791 1977 2.510613 CGCAAACCTTCCCTTCCTTTA 58.489 47.619 0.00 0.00 0.00 1.85
1821 2011 1.252779 CACGTCATGTACTTCGCATCG 59.747 52.381 0.00 0.00 0.00 3.84
1844 2034 4.803426 GCTCCCAGCCTGTCGACG 62.803 72.222 11.62 5.76 34.48 5.12
1906 2096 1.611673 CCGTTGCTGAGGAAGATGGTT 60.612 52.381 0.00 0.00 0.00 3.67
1919 2109 0.179004 TTTGTCACATCCCCGTTGCT 60.179 50.000 0.00 0.00 0.00 3.91
1928 2118 3.940209 TCAAGGGCATTTTGTCACATC 57.060 42.857 0.00 0.00 0.00 3.06
1930 2120 4.478206 TTTTCAAGGGCATTTTGTCACA 57.522 36.364 0.00 0.00 0.00 3.58
1936 2126 9.743581 AGAAATGATATTTTTCAAGGGCATTTT 57.256 25.926 12.13 0.00 35.56 1.82
1979 2181 7.880160 AGGTTTTATGCAGCATTAAGATACA 57.120 32.000 14.58 0.00 0.00 2.29
1980 2182 8.290325 GGTAGGTTTTATGCAGCATTAAGATAC 58.710 37.037 14.58 13.17 0.00 2.24
1985 2187 4.336993 CCGGTAGGTTTTATGCAGCATTAA 59.663 41.667 14.58 8.12 0.00 1.40
2021 2223 1.702182 TTTGCAGAATCACCCAAGCA 58.298 45.000 0.00 0.00 0.00 3.91
2022 2224 2.613691 CATTTGCAGAATCACCCAAGC 58.386 47.619 0.00 0.00 0.00 4.01
2023 2225 2.613691 GCATTTGCAGAATCACCCAAG 58.386 47.619 0.00 0.00 41.59 3.61
2047 2273 2.031012 TGCAACTCCGCACTCCAG 59.969 61.111 0.00 0.00 36.86 3.86
2054 2280 0.038159 AGTGACTACTGCAACTCCGC 60.038 55.000 0.00 0.00 35.34 5.54
2071 2297 6.529125 CGCTGCATTTCATATTTCTTTTCAGT 59.471 34.615 0.00 0.00 0.00 3.41
2102 2329 4.793071 TCTGTTTACATTGTGAATTGCGG 58.207 39.130 0.00 0.00 0.00 5.69
2104 2331 7.809331 TCATCTTCTGTTTACATTGTGAATTGC 59.191 33.333 0.00 0.00 0.00 3.56
2113 2340 6.176183 CCTGGTCTCATCTTCTGTTTACATT 58.824 40.000 0.00 0.00 0.00 2.71
2114 2341 5.738909 CCTGGTCTCATCTTCTGTTTACAT 58.261 41.667 0.00 0.00 0.00 2.29
2122 2349 1.830477 GACTGCCTGGTCTCATCTTCT 59.170 52.381 0.00 0.00 33.81 2.85
2129 2356 4.215349 GCATGACTGCCTGGTCTC 57.785 61.111 0.00 0.00 42.88 3.36
2152 2379 1.993956 TTACCTGCCAACACTGCAAT 58.006 45.000 0.00 0.00 38.46 3.56
2163 2390 5.376625 TCCTATCACATCAATTTACCTGCC 58.623 41.667 0.00 0.00 0.00 4.85
2173 2400 7.537596 AATTGTTTGGTTCCTATCACATCAA 57.462 32.000 0.00 0.00 0.00 2.57
2184 2411 8.978539 GTTTTTCTGATCTAATTGTTTGGTTCC 58.021 33.333 0.00 0.00 0.00 3.62
2185 2412 9.528018 TGTTTTTCTGATCTAATTGTTTGGTTC 57.472 29.630 0.00 0.00 0.00 3.62
2221 2448 4.080526 ACCTGGGTGATGAATAGTAACACC 60.081 45.833 0.00 0.00 46.79 4.16
2222 2449 5.099042 ACCTGGGTGATGAATAGTAACAC 57.901 43.478 0.00 0.00 0.00 3.32
2238 2465 8.942209 AAGAATAACTTATTTTGCCCACCTGGG 61.942 40.741 5.94 5.94 46.81 4.45
2239 2466 5.422012 AGAATAACTTATTTTGCCCACCTGG 59.578 40.000 0.00 0.00 37.09 4.45
2240 2467 6.530019 AGAATAACTTATTTTGCCCACCTG 57.470 37.500 0.00 0.00 0.00 4.00
2241 2468 6.723977 TGAAGAATAACTTATTTTGCCCACCT 59.276 34.615 0.00 0.00 39.13 4.00
2242 2469 6.811665 GTGAAGAATAACTTATTTTGCCCACC 59.188 38.462 0.00 0.00 39.13 4.61
2243 2470 6.811665 GGTGAAGAATAACTTATTTTGCCCAC 59.188 38.462 0.00 0.00 39.13 4.61
2244 2471 6.071051 GGGTGAAGAATAACTTATTTTGCCCA 60.071 38.462 11.11 0.00 39.13 5.36
2245 2472 6.071051 TGGGTGAAGAATAACTTATTTTGCCC 60.071 38.462 0.00 0.00 39.13 5.36
2246 2473 6.930731 TGGGTGAAGAATAACTTATTTTGCC 58.069 36.000 0.00 0.00 39.13 4.52
2247 2474 7.545615 CCTTGGGTGAAGAATAACTTATTTTGC 59.454 37.037 0.00 0.00 39.13 3.68
2248 2475 8.585018 ACCTTGGGTGAAGAATAACTTATTTTG 58.415 33.333 0.00 0.00 39.13 2.44
2249 2476 8.721133 ACCTTGGGTGAAGAATAACTTATTTT 57.279 30.769 0.00 0.00 39.13 1.82
2250 2477 9.816787 TTACCTTGGGTGAAGAATAACTTATTT 57.183 29.630 0.00 0.00 36.67 1.40
2251 2478 9.990868 ATTACCTTGGGTGAAGAATAACTTATT 57.009 29.630 0.00 0.00 36.67 1.40
2252 2479 9.990868 AATTACCTTGGGTGAAGAATAACTTAT 57.009 29.630 0.00 0.00 36.67 1.73
2253 2480 9.816787 AAATTACCTTGGGTGAAGAATAACTTA 57.183 29.630 0.00 0.00 36.67 2.24
2254 2481 8.721133 AAATTACCTTGGGTGAAGAATAACTT 57.279 30.769 0.00 0.00 38.14 2.66
2255 2482 8.721133 AAAATTACCTTGGGTGAAGAATAACT 57.279 30.769 0.00 0.00 36.19 2.24
2256 2483 9.850628 GTAAAATTACCTTGGGTGAAGAATAAC 57.149 33.333 0.00 0.00 36.19 1.89
2257 2484 8.732531 CGTAAAATTACCTTGGGTGAAGAATAA 58.267 33.333 0.00 0.00 36.19 1.40
2258 2485 8.102047 TCGTAAAATTACCTTGGGTGAAGAATA 58.898 33.333 0.00 0.00 36.19 1.75
2259 2486 6.943718 TCGTAAAATTACCTTGGGTGAAGAAT 59.056 34.615 0.00 0.00 36.19 2.40
2260 2487 6.297582 TCGTAAAATTACCTTGGGTGAAGAA 58.702 36.000 0.00 0.00 36.19 2.52
2261 2488 5.867330 TCGTAAAATTACCTTGGGTGAAGA 58.133 37.500 0.00 0.00 36.19 2.87
2262 2489 6.456449 CGATCGTAAAATTACCTTGGGTGAAG 60.456 42.308 7.03 0.00 36.19 3.02
2263 2490 5.352016 CGATCGTAAAATTACCTTGGGTGAA 59.648 40.000 7.03 0.00 36.19 3.18
2264 2491 4.871557 CGATCGTAAAATTACCTTGGGTGA 59.128 41.667 7.03 0.00 36.19 4.02
2265 2492 4.632688 ACGATCGTAAAATTACCTTGGGTG 59.367 41.667 21.32 0.00 36.19 4.61
2266 2493 4.835678 ACGATCGTAAAATTACCTTGGGT 58.164 39.130 21.32 0.00 40.16 4.51
2267 2494 5.806366 AACGATCGTAAAATTACCTTGGG 57.194 39.130 23.04 0.00 0.00 4.12
2268 2495 6.833839 TGAAACGATCGTAAAATTACCTTGG 58.166 36.000 23.04 0.00 0.00 3.61
2269 2496 9.976255 TTATGAAACGATCGTAAAATTACCTTG 57.024 29.630 23.04 0.00 36.74 3.61
2372 2599 9.547753 GCAACTTTTCTCATCTTATGACCTATA 57.452 33.333 0.00 0.00 35.06 1.31
2373 2600 8.049117 TGCAACTTTTCTCATCTTATGACCTAT 58.951 33.333 0.00 0.00 35.06 2.57
2374 2601 7.394016 TGCAACTTTTCTCATCTTATGACCTA 58.606 34.615 0.00 0.00 35.06 3.08
2375 2602 6.240894 TGCAACTTTTCTCATCTTATGACCT 58.759 36.000 0.00 0.00 35.06 3.85
2376 2603 6.500684 TGCAACTTTTCTCATCTTATGACC 57.499 37.500 0.00 0.00 35.06 4.02
2377 2604 8.976986 AAATGCAACTTTTCTCATCTTATGAC 57.023 30.769 0.00 0.00 35.06 3.06
2459 2686 9.117145 CGTAAGAAAATATATAGTCGCCGTAAA 57.883 33.333 0.00 0.00 43.02 2.01
2460 2687 8.659569 CGTAAGAAAATATATAGTCGCCGTAA 57.340 34.615 0.00 0.00 43.02 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.