Multiple sequence alignment - TraesCS4D01G063500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G063500 chr4D 100.000 2288 0 0 1 2288 39352766 39355053 0.000000e+00 4226
1 TraesCS4D01G063500 chr4D 91.667 300 13 4 996 1289 39394541 39394248 2.740000e-109 405
2 TraesCS4D01G063500 chr4D 92.857 84 6 0 1007 1090 418358168 418358085 3.090000e-24 122
3 TraesCS4D01G063500 chr4D 96.667 60 2 0 817 876 39394779 39394720 1.450000e-17 100
4 TraesCS4D01G063500 chr4B 88.005 1509 100 34 785 2266 57801834 57800380 0.000000e+00 1709
5 TraesCS4D01G063500 chr4B 86.220 537 30 23 789 1289 57806597 57806069 2.000000e-150 542
6 TraesCS4D01G063500 chr4B 86.354 491 51 8 1 478 57803851 57803364 2.600000e-144 521
7 TraesCS4D01G063500 chr4B 86.640 247 18 6 551 792 57802110 57801874 2.250000e-65 259
8 TraesCS4D01G063500 chr4A 90.153 782 42 14 789 1542 560964734 560965508 0.000000e+00 985
9 TraesCS4D01G063500 chr4A 90.722 679 44 14 3 666 560963925 560964599 0.000000e+00 887
10 TraesCS4D01G063500 chr4A 91.354 613 39 9 1682 2288 560969271 560969875 0.000000e+00 826
11 TraesCS4D01G063500 chr4A 87.037 540 27 26 789 1289 560951425 560951960 9.170000e-159 569
12 TraesCS4D01G063500 chr4A 93.684 95 2 1 698 792 560964601 560964691 3.060000e-29 139
13 TraesCS4D01G063500 chr4A 92.222 90 7 0 1001 1090 46561059 46561148 6.630000e-26 128
14 TraesCS4D01G063500 chr3D 82.524 206 32 4 157 360 461952533 461952736 6.500000e-41 178
15 TraesCS4D01G063500 chr7B 89.888 89 9 0 1001 1089 469742201 469742289 5.170000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G063500 chr4D 39352766 39355053 2287 False 4226.00 4226 100.00000 1 2288 1 chr4D.!!$F1 2287
1 TraesCS4D01G063500 chr4D 39394248 39394779 531 True 252.50 405 94.16700 817 1289 2 chr4D.!!$R2 472
2 TraesCS4D01G063500 chr4B 57800380 57806597 6217 True 757.75 1709 86.80475 1 2266 4 chr4B.!!$R1 2265
3 TraesCS4D01G063500 chr4A 560963925 560969875 5950 False 709.25 985 91.47825 3 2288 4 chr4A.!!$F3 2285
4 TraesCS4D01G063500 chr4A 560951425 560951960 535 False 569.00 569 87.03700 789 1289 1 chr4A.!!$F2 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
672 4619 0.036875 AAGCCCCACTAGTTCACAGC 59.963 55.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1542 5699 0.450983 CCCTTCGACCTCGTACTCAC 59.549 60.0 0.0 0.0 40.8 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 2773 9.545105 TGTAATTTTACTTTTGAGAGGTCGTTA 57.455 29.630 2.45 0.00 34.77 3.18
35 2782 7.228706 ACTTTTGAGAGGTCGTTAATGTTTCAT 59.771 33.333 0.00 0.00 0.00 2.57
54 2804 9.126151 TGTTTCATGTTTGTCCTTTTATAGTGA 57.874 29.630 0.00 0.00 0.00 3.41
74 2824 7.178712 AGTGACTCGTGTTTTTCTTGATAAG 57.821 36.000 0.00 0.00 0.00 1.73
317 3076 3.578688 CATGCTTCCCAACTAAACTTGC 58.421 45.455 0.00 0.00 0.00 4.01
322 3081 3.806949 TCCCAACTAAACTTGCCATCT 57.193 42.857 0.00 0.00 0.00 2.90
375 3141 9.783081 AGTTTGATTTGCTATGATTTTTCCTTT 57.217 25.926 0.00 0.00 0.00 3.11
405 3171 3.741344 GCGTCACATTTGTAGTTGAGTCT 59.259 43.478 0.00 0.00 0.00 3.24
454 3220 7.821846 AGAACATTGTTGTAACACCACAATTTT 59.178 29.630 6.80 7.69 40.36 1.82
666 4613 1.065126 GCATCTCAAGCCCCACTAGTT 60.065 52.381 0.00 0.00 0.00 2.24
667 4614 2.911484 CATCTCAAGCCCCACTAGTTC 58.089 52.381 0.00 0.00 0.00 3.01
668 4615 2.024176 TCTCAAGCCCCACTAGTTCA 57.976 50.000 0.00 0.00 0.00 3.18
669 4616 1.623811 TCTCAAGCCCCACTAGTTCAC 59.376 52.381 0.00 0.00 0.00 3.18
670 4617 1.347707 CTCAAGCCCCACTAGTTCACA 59.652 52.381 0.00 0.00 0.00 3.58
671 4618 1.347707 TCAAGCCCCACTAGTTCACAG 59.652 52.381 0.00 0.00 0.00 3.66
672 4619 0.036875 AAGCCCCACTAGTTCACAGC 59.963 55.000 0.00 0.00 0.00 4.40
673 4620 0.838122 AGCCCCACTAGTTCACAGCT 60.838 55.000 0.00 0.00 0.00 4.24
674 4621 0.036875 GCCCCACTAGTTCACAGCTT 59.963 55.000 0.00 0.00 0.00 3.74
675 4622 1.813513 CCCCACTAGTTCACAGCTTG 58.186 55.000 0.00 0.00 0.00 4.01
676 4623 1.611673 CCCCACTAGTTCACAGCTTGG 60.612 57.143 0.00 0.00 0.00 3.61
677 4624 1.072331 CCCACTAGTTCACAGCTTGGT 59.928 52.381 0.00 0.00 0.00 3.67
678 4625 2.417719 CCACTAGTTCACAGCTTGGTC 58.582 52.381 0.00 0.00 0.00 4.02
679 4626 2.037772 CCACTAGTTCACAGCTTGGTCT 59.962 50.000 0.00 0.00 0.00 3.85
680 4627 3.258372 CCACTAGTTCACAGCTTGGTCTA 59.742 47.826 0.00 0.00 0.00 2.59
681 4628 4.238514 CACTAGTTCACAGCTTGGTCTAC 58.761 47.826 0.00 0.00 0.00 2.59
682 4629 4.021894 CACTAGTTCACAGCTTGGTCTACT 60.022 45.833 0.00 0.00 0.00 2.57
683 4630 3.669251 AGTTCACAGCTTGGTCTACTC 57.331 47.619 0.00 0.00 0.00 2.59
684 4631 3.235200 AGTTCACAGCTTGGTCTACTCT 58.765 45.455 0.00 0.00 0.00 3.24
685 4632 4.408276 AGTTCACAGCTTGGTCTACTCTA 58.592 43.478 0.00 0.00 0.00 2.43
686 4633 4.461081 AGTTCACAGCTTGGTCTACTCTAG 59.539 45.833 0.00 0.00 0.00 2.43
687 4634 4.302559 TCACAGCTTGGTCTACTCTAGA 57.697 45.455 0.00 0.00 0.00 2.43
688 4635 4.663334 TCACAGCTTGGTCTACTCTAGAA 58.337 43.478 0.00 0.00 36.40 2.10
689 4636 5.077564 TCACAGCTTGGTCTACTCTAGAAA 58.922 41.667 0.00 0.00 36.40 2.52
690 4637 5.538813 TCACAGCTTGGTCTACTCTAGAAAA 59.461 40.000 0.00 0.00 36.40 2.29
691 4638 6.041637 TCACAGCTTGGTCTACTCTAGAAAAA 59.958 38.462 0.00 0.00 36.40 1.94
692 4639 6.146347 CACAGCTTGGTCTACTCTAGAAAAAC 59.854 42.308 0.00 0.00 36.40 2.43
693 4640 6.183360 ACAGCTTGGTCTACTCTAGAAAAACA 60.183 38.462 0.00 0.00 36.40 2.83
694 4641 6.146347 CAGCTTGGTCTACTCTAGAAAAACAC 59.854 42.308 0.00 0.00 36.40 3.32
695 4642 5.408909 GCTTGGTCTACTCTAGAAAAACACC 59.591 44.000 0.00 0.00 36.40 4.16
696 4643 5.130292 TGGTCTACTCTAGAAAAACACCG 57.870 43.478 0.00 0.00 36.40 4.94
712 4694 2.320587 CCGGTTCACAGCTGAGTGC 61.321 63.158 23.35 9.72 39.35 4.40
811 4840 3.411351 CGTCAACTTCCCACCGCG 61.411 66.667 0.00 0.00 0.00 6.46
946 5014 2.755469 GCAACACGCATCCCCCAT 60.755 61.111 0.00 0.00 41.79 4.00
947 5015 1.453015 GCAACACGCATCCCCCATA 60.453 57.895 0.00 0.00 41.79 2.74
948 5016 1.447317 GCAACACGCATCCCCCATAG 61.447 60.000 0.00 0.00 41.79 2.23
950 5018 2.281761 CACGCATCCCCCATAGCC 60.282 66.667 0.00 0.00 0.00 3.93
951 5019 3.941188 ACGCATCCCCCATAGCCG 61.941 66.667 0.00 0.00 0.00 5.52
953 5021 3.249189 GCATCCCCCATAGCCGGA 61.249 66.667 5.05 0.00 0.00 5.14
954 5022 2.829384 GCATCCCCCATAGCCGGAA 61.829 63.158 5.05 0.00 0.00 4.30
1293 5446 1.360551 CGAGGTCGTATGAGGCTGG 59.639 63.158 0.00 0.00 34.11 4.85
1351 5504 3.904800 TGGATGAGGATAGTTTTGCGA 57.095 42.857 0.00 0.00 0.00 5.10
1354 5507 2.004583 TGAGGATAGTTTTGCGACCG 57.995 50.000 0.00 0.00 0.00 4.79
1370 5523 3.447918 GACCGAGGAATTGGTCGATTA 57.552 47.619 7.46 0.00 44.68 1.75
1371 5524 3.991367 GACCGAGGAATTGGTCGATTAT 58.009 45.455 7.46 0.00 44.68 1.28
1372 5525 5.130292 GACCGAGGAATTGGTCGATTATA 57.870 43.478 7.46 0.00 44.68 0.98
1488 5644 3.131223 ACGACAATGATGAATCTCGTCCT 59.869 43.478 0.00 0.00 31.51 3.85
1535 5692 6.311690 ACCAAAATGTCCGTTAAACAAACAAG 59.688 34.615 0.00 0.00 38.03 3.16
1536 5693 6.531948 CCAAAATGTCCGTTAAACAAACAAGA 59.468 34.615 0.00 0.00 38.03 3.02
1540 5697 8.710835 AATGTCCGTTAAACAAACAAGATTTT 57.289 26.923 0.00 0.00 38.03 1.82
1542 5699 8.844441 TGTCCGTTAAACAAACAAGATTTTAG 57.156 30.769 0.00 0.00 38.03 1.85
1564 5760 1.153881 GTACGAGGTCGAAGGGCAC 60.154 63.158 6.35 0.00 43.02 5.01
1591 5787 2.124901 CCTAATTGTCGCCGCCCA 60.125 61.111 0.00 0.00 0.00 5.36
1592 5788 1.525995 CCTAATTGTCGCCGCCCAT 60.526 57.895 0.00 0.00 0.00 4.00
1593 5789 1.507141 CCTAATTGTCGCCGCCCATC 61.507 60.000 0.00 0.00 0.00 3.51
1594 5790 1.831389 CTAATTGTCGCCGCCCATCG 61.831 60.000 0.00 0.00 38.08 3.84
1641 5837 2.622962 GCACCCCCGGAAAAAGACG 61.623 63.158 0.73 0.00 0.00 4.18
1688 9475 4.991056 TGAAAGAGTTTCATTCGAGACCAG 59.009 41.667 0.00 0.00 44.21 4.00
1714 9514 6.370994 ACTGCTTTGTGAATCTCATCTAGTTG 59.629 38.462 0.00 0.00 0.00 3.16
1715 9515 6.466812 TGCTTTGTGAATCTCATCTAGTTGA 58.533 36.000 3.53 3.53 0.00 3.18
1717 9517 7.279536 TGCTTTGTGAATCTCATCTAGTTGATC 59.720 37.037 3.98 0.84 32.05 2.92
1726 9526 8.954834 ATCTCATCTAGTTGATCCTCAATACT 57.045 34.615 3.98 0.00 38.79 2.12
1769 9570 5.682862 CCATTCGAAAGTCTGTTCAAACAAG 59.317 40.000 0.00 0.00 38.66 3.16
1783 9584 0.104120 AACAAGGGCAAAGGAAACGC 59.896 50.000 0.00 0.00 0.00 4.84
1793 9594 4.321378 GGCAAAGGAAACGCTAATTTGGTA 60.321 41.667 0.00 0.00 32.74 3.25
1838 9639 7.524717 AACTACTACACATCAAGCCAAAAAT 57.475 32.000 0.00 0.00 0.00 1.82
1872 9673 6.183361 TGGGAATATGATGTTTGATCATCCCT 60.183 38.462 19.46 0.00 41.82 4.20
1890 9691 3.009473 TCCCTCTGATTCCTCACCAAAAG 59.991 47.826 0.00 0.00 0.00 2.27
1893 9694 4.699257 CCTCTGATTCCTCACCAAAAGAAG 59.301 45.833 0.00 0.00 0.00 2.85
1894 9695 5.513788 CCTCTGATTCCTCACCAAAAGAAGA 60.514 44.000 0.00 0.00 0.00 2.87
1897 9698 6.833416 TCTGATTCCTCACCAAAAGAAGAAAA 59.167 34.615 0.00 0.00 0.00 2.29
1919 9722 4.715527 AACTCCGACATGTACTTAGTCC 57.284 45.455 0.00 0.00 0.00 3.85
1942 9745 2.522638 GCCGGCGGATTACTCAACG 61.523 63.158 33.44 0.00 0.00 4.10
1997 9802 4.261489 CCGCTCGGCTTAGTTATCTTAAGA 60.261 45.833 7.82 7.82 0.00 2.10
2140 9946 1.226746 GCGGCTGGCGAATAATTAGT 58.773 50.000 28.34 0.00 0.00 2.24
2141 9947 2.409975 GCGGCTGGCGAATAATTAGTA 58.590 47.619 28.34 0.00 0.00 1.82
2142 9948 2.157085 GCGGCTGGCGAATAATTAGTAC 59.843 50.000 28.34 0.53 0.00 2.73
2186 9992 1.568504 TGGACCGCTCCAACTAATCT 58.431 50.000 0.00 0.00 44.26 2.40
2222 10028 2.094442 TGATCAGCCGTAACGTGATTCA 60.094 45.455 0.00 0.00 30.93 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.441312 AACGACCTCTCAAAAGTAAAATTACA 57.559 30.769 6.13 0.00 36.12 2.41
27 2774 9.912634 CACTATAAAAGGACAAACATGAAACAT 57.087 29.630 0.00 0.00 0.00 2.71
35 2782 6.422701 CACGAGTCACTATAAAAGGACAAACA 59.577 38.462 0.00 0.00 31.45 2.83
54 2804 5.277828 GGTGCTTATCAAGAAAAACACGAGT 60.278 40.000 0.00 0.00 0.00 4.18
74 2824 1.542108 GGAGTGCCTCATATCTGGTGC 60.542 57.143 4.85 0.00 31.08 5.01
153 2904 9.719355 TCTAACAACTGATCTTTTAGCATTACA 57.281 29.630 0.00 0.00 0.00 2.41
176 2927 9.352784 CGTTCAATTTGCCATTCTTAAAATCTA 57.647 29.630 0.00 0.00 0.00 1.98
317 3076 7.424803 TGACAATTTATATTTGCCGAAGATGG 58.575 34.615 0.00 0.00 0.00 3.51
375 3141 2.886081 ACAAATGTGACGCTTGCAAAA 58.114 38.095 0.00 0.00 0.00 2.44
377 3143 2.616376 ACTACAAATGTGACGCTTGCAA 59.384 40.909 0.00 0.00 0.00 4.08
378 3144 2.217750 ACTACAAATGTGACGCTTGCA 58.782 42.857 0.00 0.00 0.00 4.08
380 3146 4.024893 ACTCAACTACAAATGTGACGCTTG 60.025 41.667 0.00 0.00 0.00 4.01
381 3147 4.127171 ACTCAACTACAAATGTGACGCTT 58.873 39.130 0.00 0.00 0.00 4.68
382 3148 3.728845 ACTCAACTACAAATGTGACGCT 58.271 40.909 0.00 0.00 0.00 5.07
383 3149 3.741344 AGACTCAACTACAAATGTGACGC 59.259 43.478 0.00 0.00 0.00 5.19
604 4551 2.922503 TGGACTGAGCTGGCGGAA 60.923 61.111 0.00 0.00 0.00 4.30
666 4613 4.302559 TCTAGAGTAGACCAAGCTGTGA 57.697 45.455 0.00 0.00 0.00 3.58
667 4614 5.392767 TTTCTAGAGTAGACCAAGCTGTG 57.607 43.478 0.00 0.00 33.84 3.66
668 4615 6.183360 TGTTTTTCTAGAGTAGACCAAGCTGT 60.183 38.462 0.00 0.00 33.84 4.40
669 4616 6.146347 GTGTTTTTCTAGAGTAGACCAAGCTG 59.854 42.308 0.00 0.00 33.84 4.24
670 4617 6.224584 GTGTTTTTCTAGAGTAGACCAAGCT 58.775 40.000 0.00 0.00 33.84 3.74
671 4618 5.408909 GGTGTTTTTCTAGAGTAGACCAAGC 59.591 44.000 10.42 0.00 33.84 4.01
672 4619 5.634020 CGGTGTTTTTCTAGAGTAGACCAAG 59.366 44.000 13.76 0.77 33.84 3.61
673 4620 5.510179 CCGGTGTTTTTCTAGAGTAGACCAA 60.510 44.000 13.76 0.00 33.84 3.67
674 4621 4.021719 CCGGTGTTTTTCTAGAGTAGACCA 60.022 45.833 13.76 0.00 33.84 4.02
675 4622 4.021632 ACCGGTGTTTTTCTAGAGTAGACC 60.022 45.833 6.12 0.28 33.84 3.85
676 4623 5.131594 ACCGGTGTTTTTCTAGAGTAGAC 57.868 43.478 6.12 0.00 33.84 2.59
677 4624 5.302568 TGAACCGGTGTTTTTCTAGAGTAGA 59.697 40.000 8.52 0.00 33.97 2.59
678 4625 5.404667 GTGAACCGGTGTTTTTCTAGAGTAG 59.595 44.000 8.52 0.00 33.97 2.57
679 4626 5.163426 TGTGAACCGGTGTTTTTCTAGAGTA 60.163 40.000 8.52 0.00 33.97 2.59
680 4627 4.124970 GTGAACCGGTGTTTTTCTAGAGT 58.875 43.478 8.52 0.00 33.97 3.24
681 4628 4.124238 TGTGAACCGGTGTTTTTCTAGAG 58.876 43.478 8.52 0.00 33.97 2.43
682 4629 4.124238 CTGTGAACCGGTGTTTTTCTAGA 58.876 43.478 8.52 0.00 33.97 2.43
683 4630 3.303791 GCTGTGAACCGGTGTTTTTCTAG 60.304 47.826 8.52 5.83 33.97 2.43
684 4631 2.614983 GCTGTGAACCGGTGTTTTTCTA 59.385 45.455 8.52 0.00 33.97 2.10
685 4632 1.404035 GCTGTGAACCGGTGTTTTTCT 59.596 47.619 8.52 0.00 33.97 2.52
686 4633 1.404035 AGCTGTGAACCGGTGTTTTTC 59.596 47.619 8.52 0.97 33.97 2.29
687 4634 1.134175 CAGCTGTGAACCGGTGTTTTT 59.866 47.619 8.52 0.00 33.97 1.94
688 4635 0.738389 CAGCTGTGAACCGGTGTTTT 59.262 50.000 8.52 0.00 33.97 2.43
689 4636 0.107410 TCAGCTGTGAACCGGTGTTT 60.107 50.000 8.52 0.00 33.97 2.83
690 4637 0.532862 CTCAGCTGTGAACCGGTGTT 60.533 55.000 8.52 0.00 37.42 3.32
691 4638 1.069765 CTCAGCTGTGAACCGGTGT 59.930 57.895 8.52 0.00 30.14 4.16
692 4639 1.069765 ACTCAGCTGTGAACCGGTG 59.930 57.895 21.96 0.00 30.14 4.94
693 4640 1.069765 CACTCAGCTGTGAACCGGT 59.930 57.895 21.96 0.00 40.12 5.28
694 4641 2.320587 GCACTCAGCTGTGAACCGG 61.321 63.158 21.96 0.00 40.12 5.28
695 4642 2.661566 CGCACTCAGCTGTGAACCG 61.662 63.158 21.96 15.43 42.61 4.44
696 4643 1.560860 GACGCACTCAGCTGTGAACC 61.561 60.000 21.96 8.49 42.61 3.62
944 5012 1.300233 GGAGCTCGTTCCGGCTATG 60.300 63.158 7.83 0.00 39.05 2.23
966 5050 4.388499 GCCGCGGGAACAAGGAGA 62.388 66.667 29.38 0.00 0.00 3.71
1339 5492 2.288961 TCCTCGGTCGCAAAACTATC 57.711 50.000 0.00 0.00 0.00 2.08
1351 5504 5.163385 TGTTATAATCGACCAATTCCTCGGT 60.163 40.000 0.00 0.00 38.56 4.69
1354 5507 6.053005 TGGTGTTATAATCGACCAATTCCTC 58.947 40.000 10.14 0.00 35.51 3.71
1535 5692 5.227238 TCGACCTCGTACTCACTAAAATC 57.773 43.478 0.00 0.00 40.80 2.17
1536 5693 5.392811 CCTTCGACCTCGTACTCACTAAAAT 60.393 44.000 0.00 0.00 40.80 1.82
1540 5697 2.625737 CCTTCGACCTCGTACTCACTA 58.374 52.381 0.00 0.00 40.80 2.74
1542 5699 0.450983 CCCTTCGACCTCGTACTCAC 59.549 60.000 0.00 0.00 40.80 3.51
1564 5760 2.030457 GCGACAATTAGGTTGGACATCG 59.970 50.000 0.00 0.00 42.28 3.84
1613 5809 4.875713 GGGGGTGCTATGGTGGCG 62.876 72.222 0.00 0.00 0.00 5.69
1628 5824 3.023591 GCTCGCGTCTTTTTCCGGG 62.024 63.158 5.77 0.00 38.24 5.73
1688 9475 6.105333 ACTAGATGAGATTCACAAAGCAGTC 58.895 40.000 0.00 0.00 0.00 3.51
1714 9514 4.160439 TCAGTGGTGACAGTATTGAGGATC 59.840 45.833 0.00 0.00 43.90 3.36
1715 9515 4.096681 TCAGTGGTGACAGTATTGAGGAT 58.903 43.478 0.00 0.00 43.90 3.24
1717 9517 3.961480 TCAGTGGTGACAGTATTGAGG 57.039 47.619 0.00 0.00 43.90 3.86
1726 9526 1.202758 GGTGGTGAATCAGTGGTGACA 60.203 52.381 0.00 0.00 34.75 3.58
1769 9570 2.993220 CAAATTAGCGTTTCCTTTGCCC 59.007 45.455 0.00 0.00 0.00 5.36
1838 9639 5.551305 ACATCATATTCCCACTTCATCGA 57.449 39.130 0.00 0.00 0.00 3.59
1872 9673 5.567037 TCTTCTTTTGGTGAGGAATCAGA 57.433 39.130 0.00 0.00 0.00 3.27
1897 9698 4.771054 AGGACTAAGTACATGTCGGAGTTT 59.229 41.667 0.00 0.00 0.00 2.66
1900 9701 4.025061 CGTAGGACTAAGTACATGTCGGAG 60.025 50.000 0.00 0.00 0.00 4.63
1901 9702 3.873361 CGTAGGACTAAGTACATGTCGGA 59.127 47.826 0.00 0.00 0.00 4.55
1919 9722 2.355481 GTAATCCGCCGGCCGTAG 60.355 66.667 26.12 17.19 34.38 3.51
2156 9962 2.872858 GGAGCGGTCCATGATTAAGTTC 59.127 50.000 28.27 0.00 43.31 3.01
2184 9990 3.070015 TGATCATTAGCGCCATCAGAAGA 59.930 43.478 2.29 0.00 0.00 2.87
2185 9991 3.396560 TGATCATTAGCGCCATCAGAAG 58.603 45.455 2.29 0.00 0.00 2.85
2186 9992 3.396560 CTGATCATTAGCGCCATCAGAA 58.603 45.455 18.78 1.28 43.39 3.02
2222 10028 6.671614 TCTTAAATATTCCACGCGATTTGT 57.328 33.333 15.93 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.