Multiple sequence alignment - TraesCS4D01G062900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G062900 chr4D 100.000 5543 0 0 1 5543 38595538 38589996 0.000000e+00 10237.0
1 TraesCS4D01G062900 chr4D 97.872 47 1 0 4445 4491 38591047 38591001 1.280000e-11 82.4
2 TraesCS4D01G062900 chr4D 97.872 47 1 0 4492 4538 38591094 38591048 1.280000e-11 82.4
3 TraesCS4D01G062900 chr4A 91.968 3536 140 61 1037 4491 561371278 561367806 0.000000e+00 4824.0
4 TraesCS4D01G062900 chr4A 85.579 1054 41 42 7 1042 561372508 561371548 0.000000e+00 1002.0
5 TraesCS4D01G062900 chr4A 84.615 130 15 2 3095 3221 428994556 428994683 2.100000e-24 124.0
6 TraesCS4D01G062900 chr4B 93.563 2905 105 36 1625 4491 56275325 56272465 0.000000e+00 4253.0
7 TraesCS4D01G062900 chr4B 86.798 1621 79 54 6 1565 56276881 56275335 0.000000e+00 1683.0
8 TraesCS4D01G062900 chr4B 91.503 459 27 7 4876 5329 56271689 56271238 6.100000e-174 621.0
9 TraesCS4D01G062900 chr4B 86.239 545 56 9 3053 3589 64454854 64455387 1.730000e-159 573.0
10 TraesCS4D01G062900 chr4B 91.351 185 8 3 4833 5017 56271865 56271689 4.290000e-61 246.0
11 TraesCS4D01G062900 chr4B 81.900 221 9 12 4492 4684 56272510 56272293 2.070000e-34 158.0
12 TraesCS4D01G062900 chr2D 90.465 1311 77 25 2490 3762 154949281 154950581 0.000000e+00 1685.0
13 TraesCS4D01G062900 chr2D 90.160 1311 81 25 2490 3762 94715550 94714250 0.000000e+00 1663.0
14 TraesCS4D01G062900 chr2D 86.466 665 51 16 2940 3590 68786155 68786794 0.000000e+00 693.0
15 TraesCS4D01G062900 chr2D 91.176 510 28 2 3484 3993 488987903 488987411 0.000000e+00 676.0
16 TraesCS4D01G062900 chr2D 90.476 420 24 8 1799 2217 488989806 488989402 1.760000e-149 540.0
17 TraesCS4D01G062900 chr2D 90.000 420 26 8 1799 2217 94716163 94715759 3.800000e-146 529.0
18 TraesCS4D01G062900 chr2D 88.333 420 33 7 1799 2217 154948666 154949070 1.790000e-134 490.0
19 TraesCS4D01G062900 chr2D 94.652 187 7 1 2533 2719 488987904 488988087 2.530000e-73 287.0
20 TraesCS4D01G062900 chr2D 79.130 345 53 16 5105 5437 601609616 601609279 2.600000e-53 220.0
21 TraesCS4D01G062900 chr2D 93.023 129 4 2 2367 2494 94715757 94715633 3.410000e-42 183.0
22 TraesCS4D01G062900 chr2D 92.248 129 5 2 2367 2494 154949072 154949196 1.590000e-40 178.0
23 TraesCS4D01G062900 chr2D 92.373 118 6 3 2367 2482 488989400 488989284 1.240000e-36 165.0
24 TraesCS4D01G062900 chr2D 91.209 91 4 3 2715 2804 488989199 488989286 2.710000e-23 121.0
25 TraesCS4D01G062900 chr7D 91.765 510 28 3 3484 3993 505332612 505333107 0.000000e+00 697.0
26 TraesCS4D01G062900 chr7D 87.523 545 49 9 3053 3589 346568220 346567687 3.670000e-171 612.0
27 TraesCS4D01G062900 chr7D 88.571 490 41 7 3107 3587 49472705 49472222 1.040000e-161 580.0
28 TraesCS4D01G062900 chr7D 86.071 481 54 10 3107 3587 49521739 49521272 6.410000e-139 505.0
29 TraesCS4D01G062900 chr7D 93.925 214 8 3 2005 2217 505330902 505331111 8.960000e-83 318.0
30 TraesCS4D01G062900 chr7D 94.118 187 7 2 2533 2719 505332611 505332429 1.180000e-71 281.0
31 TraesCS4D01G062900 chr7D 88.136 177 16 3 2940 3114 49525706 49525533 7.280000e-49 206.0
32 TraesCS4D01G062900 chr7D 77.612 335 59 14 5105 5425 489013359 489013691 7.330000e-44 189.0
33 TraesCS4D01G062900 chr7D 76.627 338 65 13 5105 5436 436379470 436379799 2.050000e-39 174.0
34 TraesCS4D01G062900 chr7D 85.143 175 11 9 1799 1969 505330745 505330908 1.240000e-36 165.0
35 TraesCS4D01G062900 chr7D 92.373 118 6 3 2367 2482 505331113 505331229 1.240000e-36 165.0
36 TraesCS4D01G062900 chr5A 85.757 674 50 22 2940 3590 580276509 580275859 0.000000e+00 671.0
37 TraesCS4D01G062900 chr5A 79.198 399 56 18 4968 5353 635463813 635464197 9.220000e-63 252.0
38 TraesCS4D01G062900 chr5A 83.846 130 16 2 3095 3221 98397766 98397893 9.750000e-23 119.0
39 TraesCS4D01G062900 chr2B 92.341 457 16 6 2493 2935 577443329 577442878 2.820000e-177 632.0
40 TraesCS4D01G062900 chr2B 86.667 420 25 13 1799 2217 577443899 577443510 2.370000e-118 436.0
41 TraesCS4D01G062900 chr2B 92.308 130 6 1 2367 2496 577443508 577443383 1.230000e-41 182.0
42 TraesCS4D01G062900 chr2B 98.485 66 1 0 3815 3880 577442248 577442183 3.510000e-22 117.0
43 TraesCS4D01G062900 chr3D 77.228 505 77 29 4954 5446 387349050 387349528 1.530000e-65 261.0
44 TraesCS4D01G062900 chr6D 78.510 349 58 15 5105 5447 461625303 461625640 4.350000e-51 213.0
45 TraesCS4D01G062900 chr7A 78.333 360 51 22 4794 5138 126870246 126870593 2.020000e-49 207.0
46 TraesCS4D01G062900 chr7A 77.876 339 55 13 5105 5436 63385298 63385623 5.670000e-45 193.0
47 TraesCS4D01G062900 chr6B 77.650 349 59 16 5105 5447 703445529 703445864 1.580000e-45 195.0
48 TraesCS4D01G062900 chr1D 77.586 348 58 17 5093 5432 46460595 46460930 5.670000e-45 193.0
49 TraesCS4D01G062900 chr2A 88.525 61 6 1 4677 4736 778749503 778749443 7.700000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G062900 chr4D 38589996 38595538 5542 True 10237.000000 10237 100.000000 1 5543 1 chr4D.!!$R1 5542
1 TraesCS4D01G062900 chr4A 561367806 561372508 4702 True 2913.000000 4824 88.773500 7 4491 2 chr4A.!!$R1 4484
2 TraesCS4D01G062900 chr4B 56271238 56276881 5643 True 1392.200000 4253 89.023000 6 5329 5 chr4B.!!$R1 5323
3 TraesCS4D01G062900 chr4B 64454854 64455387 533 False 573.000000 573 86.239000 3053 3589 1 chr4B.!!$F1 536
4 TraesCS4D01G062900 chr2D 94714250 94716163 1913 True 791.666667 1663 91.061000 1799 3762 3 chr2D.!!$R2 1963
5 TraesCS4D01G062900 chr2D 154948666 154950581 1915 False 784.333333 1685 90.348667 1799 3762 3 chr2D.!!$F2 1963
6 TraesCS4D01G062900 chr2D 68786155 68786794 639 False 693.000000 693 86.466000 2940 3590 1 chr2D.!!$F1 650
7 TraesCS4D01G062900 chr2D 488987411 488989806 2395 True 460.333333 676 91.341667 1799 3993 3 chr2D.!!$R3 2194
8 TraesCS4D01G062900 chr2D 488987904 488989286 1382 False 204.000000 287 92.930500 2533 2804 2 chr2D.!!$F3 271
9 TraesCS4D01G062900 chr7D 346567687 346568220 533 True 612.000000 612 87.523000 3053 3589 1 chr7D.!!$R2 536
10 TraesCS4D01G062900 chr7D 49521272 49525706 4434 True 355.500000 505 87.103500 2940 3587 2 chr7D.!!$R4 647
11 TraesCS4D01G062900 chr7D 505330745 505333107 2362 False 336.250000 697 90.801500 1799 3993 4 chr7D.!!$F3 2194
12 TraesCS4D01G062900 chr5A 580275859 580276509 650 True 671.000000 671 85.757000 2940 3590 1 chr5A.!!$R1 650
13 TraesCS4D01G062900 chr2B 577442183 577443899 1716 True 341.750000 632 92.450250 1799 3880 4 chr2B.!!$R1 2081

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 448 0.249784 CCTCCAGCGATGGATGTCTG 60.250 60.000 24.87 11.05 37.34 3.51 F
939 996 0.252974 TGCATGGTGGTAGGGGTAGT 60.253 55.000 0.00 0.00 0.00 2.73 F
1278 1669 0.035458 GGTGGTCTTGTGTGGAGAGG 59.965 60.000 0.00 0.00 0.00 3.69 F
1286 1677 0.040351 TGTGTGGAGAGGAGAGAGGG 59.960 60.000 0.00 0.00 0.00 4.30 F
1289 1680 0.336737 GTGGAGAGGAGAGAGGGGAA 59.663 60.000 0.00 0.00 0.00 3.97 F
2120 2537 0.465642 GTAGTAACCATGGCAGGCCC 60.466 60.000 13.04 0.00 34.56 5.80 F
3430 9494 1.078143 AGGGAGCGCATCTTTGGTC 60.078 57.895 11.47 0.00 0.00 4.02 F
4169 10471 1.443828 GAGGAAGGAAGCTAGGCCG 59.556 63.158 0.00 0.00 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1272 1663 0.105709 CCTTCCCCTCTCTCCTCTCC 60.106 65.000 0.00 0.0 0.00 3.71 R
2937 4984 0.108662 CACGAGTGCAGTGCTCCATA 60.109 55.000 17.60 0.0 32.52 2.74 R
3189 9078 1.203994 TCGGCCTAGAACTAGCACAAC 59.796 52.381 0.00 0.0 31.95 3.32 R
3252 9143 2.736144 TCCACACAGTAATCACGTCC 57.264 50.000 0.00 0.0 0.00 4.79 R
3295 9188 1.534595 GGAAGCAGAGAAACAGTGCAG 59.465 52.381 0.00 0.0 39.80 4.41 R
3563 9634 0.035881 TGAGGTTCTGCTGGAGCTTG 59.964 55.000 4.96 0.0 42.66 4.01 R
4262 10567 0.039527 GCCAACGCAACAACCTTAGG 60.040 55.000 0.00 0.0 34.03 2.69 R
5384 12156 3.074675 TGTTGGCATTGGTATTACCGT 57.925 42.857 8.32 0.0 42.58 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.837788 ACAAGTTATAGTAACTTTTTACCGCT 57.162 30.769 11.31 0.00 38.79 5.52
106 107 3.838271 GCGCCCATCCACGAGAGA 61.838 66.667 0.00 0.00 0.00 3.10
107 108 2.415010 CGCCCATCCACGAGAGAG 59.585 66.667 0.00 0.00 0.00 3.20
108 109 2.121538 CGCCCATCCACGAGAGAGA 61.122 63.158 0.00 0.00 0.00 3.10
109 110 1.739049 GCCCATCCACGAGAGAGAG 59.261 63.158 0.00 0.00 0.00 3.20
110 111 0.753479 GCCCATCCACGAGAGAGAGA 60.753 60.000 0.00 0.00 0.00 3.10
176 177 4.096311 GTGTAGCGTATACACACACAGAG 58.904 47.826 21.02 0.00 45.13 3.35
230 231 6.570957 GCTGTAACTTTTGGTGTTATTACCCC 60.571 42.308 0.00 0.00 40.09 4.95
231 232 6.371278 TGTAACTTTTGGTGTTATTACCCCA 58.629 36.000 0.00 0.00 40.09 4.96
232 233 6.490721 TGTAACTTTTGGTGTTATTACCCCAG 59.509 38.462 0.00 0.00 40.09 4.45
233 234 5.069518 ACTTTTGGTGTTATTACCCCAGT 57.930 39.130 0.00 0.00 40.09 4.00
234 235 4.830600 ACTTTTGGTGTTATTACCCCAGTG 59.169 41.667 0.00 0.00 40.09 3.66
235 236 3.443145 TTGGTGTTATTACCCCAGTGG 57.557 47.619 0.63 0.63 40.09 4.00
236 237 1.004979 TGGTGTTATTACCCCAGTGGC 59.995 52.381 2.61 0.00 40.09 5.01
237 238 1.683938 GGTGTTATTACCCCAGTGGCC 60.684 57.143 2.61 0.00 37.83 5.36
261 266 2.403378 CCGTGGCCATGGTAAACGG 61.403 63.158 32.79 28.52 46.69 4.44
341 357 1.801913 GCCTCACTGTAGCACGTCG 60.802 63.158 0.00 0.00 0.00 5.12
421 444 2.281345 GCCCTCCAGCGATGGATG 60.281 66.667 24.87 20.52 37.34 3.51
422 445 3.112205 GCCCTCCAGCGATGGATGT 62.112 63.158 24.87 0.00 37.34 3.06
423 446 1.070445 CCCTCCAGCGATGGATGTC 59.930 63.158 24.87 0.00 37.34 3.06
424 447 1.406065 CCCTCCAGCGATGGATGTCT 61.406 60.000 24.87 0.00 37.34 3.41
425 448 0.249784 CCTCCAGCGATGGATGTCTG 60.250 60.000 24.87 11.05 37.34 3.51
441 485 1.989165 GTCTGACGAGTTCATCTGCAC 59.011 52.381 0.00 0.00 32.17 4.57
443 487 0.388520 TGACGAGTTCATCTGCACCG 60.389 55.000 0.00 0.00 0.00 4.94
452 496 5.242434 AGTTCATCTGCACCGTTATTTACA 58.758 37.500 0.00 0.00 0.00 2.41
502 548 0.944311 CTCCGTTGCTGCACGTTACT 60.944 55.000 18.25 0.00 38.57 2.24
503 549 0.314618 TCCGTTGCTGCACGTTACTA 59.685 50.000 18.25 0.00 38.57 1.82
504 550 0.713883 CCGTTGCTGCACGTTACTAG 59.286 55.000 18.25 0.00 38.57 2.57
505 551 1.415374 CGTTGCTGCACGTTACTAGT 58.585 50.000 0.00 0.00 35.34 2.57
514 560 5.239359 TGCACGTTACTAGTACCATGTAG 57.761 43.478 0.91 0.00 0.00 2.74
516 562 4.336433 GCACGTTACTAGTACCATGTAGGA 59.664 45.833 0.91 0.00 41.22 2.94
517 563 5.505324 GCACGTTACTAGTACCATGTAGGAG 60.505 48.000 0.91 0.00 41.22 3.69
518 564 5.587844 CACGTTACTAGTACCATGTAGGAGT 59.412 44.000 0.91 0.00 41.22 3.85
545 595 9.674068 AATATTTGTTTTTAACTGGTTGGTGTT 57.326 25.926 0.00 0.00 0.00 3.32
619 669 0.842635 AGAAATGGAGGCAGCCTAGG 59.157 55.000 16.16 3.67 31.76 3.02
656 711 1.924731 CTCGGATCACATAGCCCCTA 58.075 55.000 0.00 0.00 0.00 3.53
664 719 0.822532 ACATAGCCCCTAGACGGACG 60.823 60.000 0.00 0.00 33.16 4.79
718 773 2.035576 ACTCGCCCGAGACATAAATACC 59.964 50.000 22.90 0.00 44.53 2.73
720 775 1.069513 CGCCCGAGACATAAATACCCA 59.930 52.381 0.00 0.00 0.00 4.51
722 777 2.104281 GCCCGAGACATAAATACCCACT 59.896 50.000 0.00 0.00 0.00 4.00
723 778 3.802675 GCCCGAGACATAAATACCCACTC 60.803 52.174 0.00 0.00 0.00 3.51
724 779 3.552273 CCCGAGACATAAATACCCACTCG 60.552 52.174 0.00 0.00 43.07 4.18
725 780 3.639538 CGAGACATAAATACCCACTCGG 58.360 50.000 0.00 0.00 40.89 4.63
798 853 2.812591 ACGCCTACAGATACGATCGATT 59.187 45.455 24.34 8.30 0.00 3.34
799 854 3.120269 ACGCCTACAGATACGATCGATTC 60.120 47.826 24.34 17.00 0.00 2.52
930 987 1.050204 AAGTTGCATTGCATGGTGGT 58.950 45.000 12.95 0.00 38.76 4.16
939 996 0.252974 TGCATGGTGGTAGGGGTAGT 60.253 55.000 0.00 0.00 0.00 2.73
941 998 2.121129 GCATGGTGGTAGGGGTAGTAA 58.879 52.381 0.00 0.00 0.00 2.24
942 999 2.506644 GCATGGTGGTAGGGGTAGTAAA 59.493 50.000 0.00 0.00 0.00 2.01
990 1059 2.797177 AAGATCTGCTCCTCCAAACC 57.203 50.000 0.00 0.00 0.00 3.27
1250 1641 2.118076 CAGAGGGCAAAAGGGGCA 59.882 61.111 0.00 0.00 34.52 5.36
1272 1663 2.978010 GGGCGGTGGTCTTGTGTG 60.978 66.667 0.00 0.00 0.00 3.82
1273 1664 2.978010 GGCGGTGGTCTTGTGTGG 60.978 66.667 0.00 0.00 0.00 4.17
1274 1665 2.110213 GCGGTGGTCTTGTGTGGA 59.890 61.111 0.00 0.00 0.00 4.02
1275 1666 1.961277 GCGGTGGTCTTGTGTGGAG 60.961 63.158 0.00 0.00 0.00 3.86
1276 1667 1.745890 CGGTGGTCTTGTGTGGAGA 59.254 57.895 0.00 0.00 0.00 3.71
1277 1668 0.319900 CGGTGGTCTTGTGTGGAGAG 60.320 60.000 0.00 0.00 0.00 3.20
1278 1669 0.035458 GGTGGTCTTGTGTGGAGAGG 59.965 60.000 0.00 0.00 0.00 3.69
1279 1670 1.048601 GTGGTCTTGTGTGGAGAGGA 58.951 55.000 0.00 0.00 0.00 3.71
1280 1671 1.001406 GTGGTCTTGTGTGGAGAGGAG 59.999 57.143 0.00 0.00 0.00 3.69
1281 1672 1.133167 TGGTCTTGTGTGGAGAGGAGA 60.133 52.381 0.00 0.00 0.00 3.71
1282 1673 1.548269 GGTCTTGTGTGGAGAGGAGAG 59.452 57.143 0.00 0.00 0.00 3.20
1283 1674 2.520069 GTCTTGTGTGGAGAGGAGAGA 58.480 52.381 0.00 0.00 0.00 3.10
1284 1675 2.491693 GTCTTGTGTGGAGAGGAGAGAG 59.508 54.545 0.00 0.00 0.00 3.20
1285 1676 1.824230 CTTGTGTGGAGAGGAGAGAGG 59.176 57.143 0.00 0.00 0.00 3.69
1286 1677 0.040351 TGTGTGGAGAGGAGAGAGGG 59.960 60.000 0.00 0.00 0.00 4.30
1287 1678 0.686112 GTGTGGAGAGGAGAGAGGGG 60.686 65.000 0.00 0.00 0.00 4.79
1288 1679 0.851332 TGTGGAGAGGAGAGAGGGGA 60.851 60.000 0.00 0.00 0.00 4.81
1289 1680 0.336737 GTGGAGAGGAGAGAGGGGAA 59.663 60.000 0.00 0.00 0.00 3.97
1290 1681 0.633921 TGGAGAGGAGAGAGGGGAAG 59.366 60.000 0.00 0.00 0.00 3.46
1468 1860 4.287326 TCTCTTTTCCCCTCTCTTCTTTCC 59.713 45.833 0.00 0.00 0.00 3.13
1469 1861 4.243643 TCTTTTCCCCTCTCTTCTTTCCT 58.756 43.478 0.00 0.00 0.00 3.36
1470 1862 4.665483 TCTTTTCCCCTCTCTTCTTTCCTT 59.335 41.667 0.00 0.00 0.00 3.36
1471 1863 4.642466 TTTCCCCTCTCTTCTTTCCTTC 57.358 45.455 0.00 0.00 0.00 3.46
1472 1864 3.569135 TCCCCTCTCTTCTTTCCTTCT 57.431 47.619 0.00 0.00 0.00 2.85
1480 1872 6.429692 CCTCTCTTCTTTCCTTCTTTCTTTCC 59.570 42.308 0.00 0.00 0.00 3.13
1533 1942 6.761714 TCCTTGCTTATTTCTTCCGTATTCTC 59.238 38.462 0.00 0.00 0.00 2.87
1544 1954 6.283694 TCTTCCGTATTCTCCTTCATTCATG 58.716 40.000 0.00 0.00 0.00 3.07
1596 2006 6.560253 TCTTTCTGTTAATGAGAAGCAACC 57.440 37.500 0.00 0.00 31.17 3.77
1642 2053 1.202580 CGCTGCTCTATACTGGCCTTT 60.203 52.381 3.32 0.00 0.00 3.11
1643 2054 2.743183 CGCTGCTCTATACTGGCCTTTT 60.743 50.000 3.32 0.00 0.00 2.27
1653 2064 7.106239 TCTATACTGGCCTTTTTCTTCTTCTG 58.894 38.462 3.32 0.00 0.00 3.02
1668 2079 6.046593 TCTTCTTCTGTAAGTTTTTCGCAGA 58.953 36.000 0.00 0.00 34.80 4.26
1749 2160 7.533426 CACTTTTCCAGGAGTATTTGATCTTG 58.467 38.462 0.00 0.00 0.00 3.02
1802 2213 1.071471 CACGCTGAGTTTGACCCCT 59.929 57.895 0.00 0.00 0.00 4.79
1831 2242 4.697514 TCTTGATGCTTATTCTTCTCCCG 58.302 43.478 0.00 0.00 0.00 5.14
1960 2375 2.092429 TGTTGCTGTCTTTCTTGTCCCT 60.092 45.455 0.00 0.00 0.00 4.20
1963 2378 4.431416 TGCTGTCTTTCTTGTCCCTTTA 57.569 40.909 0.00 0.00 0.00 1.85
2037 2452 3.375299 CCCTTCTCGCAAAAATCCTAGTG 59.625 47.826 0.00 0.00 0.00 2.74
2052 2467 3.941483 TCCTAGTGCTATTTTCAGCTTGC 59.059 43.478 0.00 0.00 42.30 4.01
2094 2510 2.032030 CCATGATCACGCCGGTATTTTC 60.032 50.000 1.90 0.00 0.00 2.29
2113 2530 2.980568 TCGGCAAAGTAGTAACCATGG 58.019 47.619 11.19 11.19 0.00 3.66
2120 2537 0.465642 GTAGTAACCATGGCAGGCCC 60.466 60.000 13.04 0.00 34.56 5.80
2227 2645 1.606224 GGAAACGAGTAAAGGCCGTGA 60.606 52.381 0.00 0.00 36.58 4.35
2229 2647 1.722011 AACGAGTAAAGGCCGTGATG 58.278 50.000 0.00 0.00 36.58 3.07
2242 2660 3.632145 GGCCGTGATGTTTCCATAAATCT 59.368 43.478 0.00 0.00 0.00 2.40
2243 2661 4.097892 GGCCGTGATGTTTCCATAAATCTT 59.902 41.667 0.00 0.00 0.00 2.40
2244 2662 5.273944 GCCGTGATGTTTCCATAAATCTTC 58.726 41.667 0.00 0.00 0.00 2.87
2245 2663 5.733373 GCCGTGATGTTTCCATAAATCTTCC 60.733 44.000 0.00 0.00 0.00 3.46
2246 2664 5.221048 CCGTGATGTTTCCATAAATCTTCCC 60.221 44.000 0.00 0.00 0.00 3.97
2247 2665 5.356751 CGTGATGTTTCCATAAATCTTCCCA 59.643 40.000 0.00 0.00 0.00 4.37
2248 2666 6.564328 GTGATGTTTCCATAAATCTTCCCAC 58.436 40.000 0.00 0.00 0.00 4.61
2249 2667 5.656416 TGATGTTTCCATAAATCTTCCCACC 59.344 40.000 0.00 0.00 0.00 4.61
2250 2668 4.349365 TGTTTCCATAAATCTTCCCACCC 58.651 43.478 0.00 0.00 0.00 4.61
2251 2669 3.680777 TTCCATAAATCTTCCCACCCC 57.319 47.619 0.00 0.00 0.00 4.95
2252 2670 2.579100 TCCATAAATCTTCCCACCCCA 58.421 47.619 0.00 0.00 0.00 4.96
2302 2720 5.044179 TGAATGTTTTCCCAGGGATATGTCT 60.044 40.000 9.80 0.00 0.00 3.41
2323 2742 6.599244 TGTCTTGGCATATCTTGGTAGAAAAG 59.401 38.462 0.00 0.00 33.20 2.27
2393 2812 1.247567 GGTCCAAGTTCATGTGGGTG 58.752 55.000 0.59 0.00 35.46 4.61
2428 2847 1.472082 TCGCTTGTGCCATTGGTATTG 59.528 47.619 4.26 0.00 35.36 1.90
2453 2873 1.271108 GCTAGATCCCTAAAGCTGGCC 60.271 57.143 0.00 0.00 0.00 5.36
2541 3065 1.341285 TGATTGACCCTGGGCTTGATG 60.341 52.381 14.08 0.00 0.00 3.07
2574 3098 5.011635 TGTTGGCAGTCAGATCTTTAGTGTA 59.988 40.000 0.00 0.00 0.00 2.90
2672 3362 7.437713 TCTACTGACTGATATGGGAAAACAT 57.562 36.000 0.00 0.00 34.90 2.71
2762 4785 7.337938 TCAAGATATGCCTTCACTGAAATGTA 58.662 34.615 0.00 0.00 0.00 2.29
2765 4788 8.162878 AGATATGCCTTCACTGAAATGTATTG 57.837 34.615 0.00 0.00 0.00 1.90
2917 4964 4.468713 CTGGTCTGATCTGATCTGGTCTA 58.531 47.826 20.10 12.52 0.00 2.59
2918 4965 4.468713 TGGTCTGATCTGATCTGGTCTAG 58.531 47.826 20.10 8.80 0.00 2.43
2937 4984 5.892686 GTCTAGTATCCTTGTGAACTACCCT 59.107 44.000 0.00 0.00 0.00 4.34
2958 5018 1.735920 GGAGCACTGCACTCGTGAG 60.736 63.158 8.64 0.00 34.87 3.51
2985 5045 5.356882 TGCTGCAGTGTTTTATGTAGTTC 57.643 39.130 16.64 0.00 32.43 3.01
3039 5101 5.884792 TCAGTTAGGAGTAGTAGTGTTAGGC 59.115 44.000 0.00 0.00 0.00 3.93
3041 5103 6.152323 CAGTTAGGAGTAGTAGTGTTAGGCAA 59.848 42.308 0.00 0.00 0.00 4.52
3050 5112 9.433153 AGTAGTAGTGTTAGGCAAAATTAGAAC 57.567 33.333 0.00 0.00 0.00 3.01
3130 8997 5.988310 ATGTGTTCACAAATGACATCCAT 57.012 34.783 9.68 0.00 33.38 3.41
3142 9012 2.277084 GACATCCATGTTGGTCGTACC 58.723 52.381 0.00 0.00 41.95 3.34
3173 9057 4.628333 TGCTACTGATTTTAGTACGTTGGC 59.372 41.667 0.00 0.00 32.19 4.52
3189 9078 3.993535 GCTGAGGCCCAAGTTGAG 58.006 61.111 3.87 0.00 0.00 3.02
3207 9096 2.233922 TGAGTTGTGCTAGTTCTAGGCC 59.766 50.000 0.00 0.00 0.00 5.19
3225 9115 7.479980 TCTAGGCCGATGAAAAATTATGTTTG 58.520 34.615 0.00 0.00 0.00 2.93
3252 9143 8.260270 TCATGAAAAAGTGTCTGTCTGATATG 57.740 34.615 0.00 0.00 0.00 1.78
3295 9188 5.813080 AAGTACCACTGTTTCTTGTTCAC 57.187 39.130 0.00 0.00 0.00 3.18
3430 9494 1.078143 AGGGAGCGCATCTTTGGTC 60.078 57.895 11.47 0.00 0.00 4.02
3563 9634 2.598394 TGCTGCAGGAACCAAGCC 60.598 61.111 17.12 0.00 0.00 4.35
3964 10266 1.671379 GTTCAACCTCCTCCACGGC 60.671 63.158 0.00 0.00 0.00 5.68
4169 10471 1.443828 GAGGAAGGAAGCTAGGCCG 59.556 63.158 0.00 0.00 0.00 6.13
4206 10508 3.277602 CGGCATAGCAGCTGCAGG 61.278 66.667 38.24 26.73 45.16 4.85
4228 10533 2.043252 AGGAGGAGTAGCAGGTAGTGTT 59.957 50.000 0.00 0.00 0.00 3.32
4229 10534 2.427812 GGAGGAGTAGCAGGTAGTGTTC 59.572 54.545 0.00 0.00 0.00 3.18
4230 10535 2.093106 AGGAGTAGCAGGTAGTGTTCG 58.907 52.381 0.00 0.00 0.00 3.95
4231 10536 2.089980 GGAGTAGCAGGTAGTGTTCGA 58.910 52.381 0.00 0.00 0.00 3.71
4232 10537 2.097791 GGAGTAGCAGGTAGTGTTCGAG 59.902 54.545 0.00 0.00 0.00 4.04
4262 10567 3.567164 TGGTAGTAGCGGATTAGCAGTAC 59.433 47.826 0.00 0.00 40.15 2.73
4295 10600 2.872842 GCGTTGGCTAAGGTTTAGGTGA 60.873 50.000 4.39 0.00 35.83 4.02
4297 10602 3.556423 CGTTGGCTAAGGTTTAGGTGAGT 60.556 47.826 0.00 0.00 0.00 3.41
4342 10647 1.741401 TAGTGGCGTCTGCATGCAC 60.741 57.895 18.46 7.32 45.35 4.57
4468 10773 4.540824 GTGTTTTCTTCTTCACATGCCTC 58.459 43.478 0.00 0.00 0.00 4.70
4469 10774 4.276926 GTGTTTTCTTCTTCACATGCCTCT 59.723 41.667 0.00 0.00 0.00 3.69
4470 10775 4.516698 TGTTTTCTTCTTCACATGCCTCTC 59.483 41.667 0.00 0.00 0.00 3.20
4471 10776 4.630644 TTTCTTCTTCACATGCCTCTCT 57.369 40.909 0.00 0.00 0.00 3.10
4472 10777 3.883830 TCTTCTTCACATGCCTCTCTC 57.116 47.619 0.00 0.00 0.00 3.20
4473 10778 3.439154 TCTTCTTCACATGCCTCTCTCT 58.561 45.455 0.00 0.00 0.00 3.10
4474 10779 4.604156 TCTTCTTCACATGCCTCTCTCTA 58.396 43.478 0.00 0.00 0.00 2.43
4475 10780 4.644234 TCTTCTTCACATGCCTCTCTCTAG 59.356 45.833 0.00 0.00 0.00 2.43
4476 10781 3.974719 TCTTCACATGCCTCTCTCTAGT 58.025 45.455 0.00 0.00 0.00 2.57
4477 10782 4.348486 TCTTCACATGCCTCTCTCTAGTT 58.652 43.478 0.00 0.00 0.00 2.24
4478 10783 4.159321 TCTTCACATGCCTCTCTCTAGTTG 59.841 45.833 0.00 0.00 0.00 3.16
4479 10784 3.435275 TCACATGCCTCTCTCTAGTTGT 58.565 45.455 0.00 0.00 0.00 3.32
4480 10785 3.194329 TCACATGCCTCTCTCTAGTTGTG 59.806 47.826 0.00 0.00 35.67 3.33
4481 10786 3.056250 CACATGCCTCTCTCTAGTTGTGT 60.056 47.826 0.00 0.00 0.00 3.72
4482 10787 3.580458 ACATGCCTCTCTCTAGTTGTGTT 59.420 43.478 0.00 0.00 0.00 3.32
4483 10788 3.944055 TGCCTCTCTCTAGTTGTGTTC 57.056 47.619 0.00 0.00 0.00 3.18
4484 10789 3.230976 TGCCTCTCTCTAGTTGTGTTCA 58.769 45.455 0.00 0.00 0.00 3.18
4485 10790 3.834813 TGCCTCTCTCTAGTTGTGTTCAT 59.165 43.478 0.00 0.00 0.00 2.57
4486 10791 4.284490 TGCCTCTCTCTAGTTGTGTTCATT 59.716 41.667 0.00 0.00 0.00 2.57
4487 10792 4.629200 GCCTCTCTCTAGTTGTGTTCATTG 59.371 45.833 0.00 0.00 0.00 2.82
4488 10793 5.788450 CCTCTCTCTAGTTGTGTTCATTGT 58.212 41.667 0.00 0.00 0.00 2.71
4489 10794 5.636965 CCTCTCTCTAGTTGTGTTCATTGTG 59.363 44.000 0.00 0.00 0.00 3.33
4490 10795 4.991056 TCTCTCTAGTTGTGTTCATTGTGC 59.009 41.667 0.00 0.00 0.00 4.57
4491 10796 4.960938 TCTCTAGTTGTGTTCATTGTGCT 58.039 39.130 0.00 0.00 0.00 4.40
4492 10797 4.751600 TCTCTAGTTGTGTTCATTGTGCTG 59.248 41.667 0.00 0.00 0.00 4.41
4493 10798 3.814842 TCTAGTTGTGTTCATTGTGCTGG 59.185 43.478 0.00 0.00 0.00 4.85
4494 10799 2.378038 AGTTGTGTTCATTGTGCTGGT 58.622 42.857 0.00 0.00 0.00 4.00
4495 10800 2.099592 AGTTGTGTTCATTGTGCTGGTG 59.900 45.455 0.00 0.00 0.00 4.17
4496 10801 1.761449 TGTGTTCATTGTGCTGGTGT 58.239 45.000 0.00 0.00 0.00 4.16
4497 10802 2.098614 TGTGTTCATTGTGCTGGTGTT 58.901 42.857 0.00 0.00 0.00 3.32
4498 10803 2.495270 TGTGTTCATTGTGCTGGTGTTT 59.505 40.909 0.00 0.00 0.00 2.83
4499 10804 3.056250 TGTGTTCATTGTGCTGGTGTTTT 60.056 39.130 0.00 0.00 0.00 2.43
4500 10805 3.551485 GTGTTCATTGTGCTGGTGTTTTC 59.449 43.478 0.00 0.00 0.00 2.29
4501 10806 3.446873 TGTTCATTGTGCTGGTGTTTTCT 59.553 39.130 0.00 0.00 0.00 2.52
4502 10807 4.081752 TGTTCATTGTGCTGGTGTTTTCTT 60.082 37.500 0.00 0.00 0.00 2.52
4503 10808 4.305989 TCATTGTGCTGGTGTTTTCTTC 57.694 40.909 0.00 0.00 0.00 2.87
4504 10809 3.953612 TCATTGTGCTGGTGTTTTCTTCT 59.046 39.130 0.00 0.00 0.00 2.85
4505 10810 4.402155 TCATTGTGCTGGTGTTTTCTTCTT 59.598 37.500 0.00 0.00 0.00 2.52
4506 10811 4.370364 TTGTGCTGGTGTTTTCTTCTTC 57.630 40.909 0.00 0.00 0.00 2.87
4507 10812 3.351740 TGTGCTGGTGTTTTCTTCTTCA 58.648 40.909 0.00 0.00 0.00 3.02
4508 10813 3.128589 TGTGCTGGTGTTTTCTTCTTCAC 59.871 43.478 0.00 0.00 0.00 3.18
4509 10814 3.128589 GTGCTGGTGTTTTCTTCTTCACA 59.871 43.478 0.00 0.00 33.17 3.58
4510 10815 3.953612 TGCTGGTGTTTTCTTCTTCACAT 59.046 39.130 0.00 0.00 33.17 3.21
4511 10816 4.202040 TGCTGGTGTTTTCTTCTTCACATG 60.202 41.667 0.00 0.00 33.17 3.21
4512 10817 4.293415 CTGGTGTTTTCTTCTTCACATGC 58.707 43.478 0.00 0.00 33.17 4.06
4513 10818 3.068024 TGGTGTTTTCTTCTTCACATGCC 59.932 43.478 0.00 0.00 33.17 4.40
4514 10819 3.319122 GGTGTTTTCTTCTTCACATGCCT 59.681 43.478 0.00 0.00 33.17 4.75
4515 10820 4.540824 GTGTTTTCTTCTTCACATGCCTC 58.459 43.478 0.00 0.00 0.00 4.70
4585 10893 3.511934 AGAGTAGCTCAACTCCGTTTCAT 59.488 43.478 12.16 0.00 45.86 2.57
4588 10896 2.693069 AGCTCAACTCCGTTTCATCAG 58.307 47.619 0.00 0.00 0.00 2.90
4591 10899 3.368236 GCTCAACTCCGTTTCATCAGTAC 59.632 47.826 0.00 0.00 0.00 2.73
4592 10900 4.810790 CTCAACTCCGTTTCATCAGTACT 58.189 43.478 0.00 0.00 0.00 2.73
4594 10902 5.706916 TCAACTCCGTTTCATCAGTACTAC 58.293 41.667 0.00 0.00 0.00 2.73
4650 10983 2.647683 TGCATGTAAACCACCAGTCA 57.352 45.000 0.00 0.00 0.00 3.41
4651 10984 2.937519 TGCATGTAAACCACCAGTCAA 58.062 42.857 0.00 0.00 0.00 3.18
4656 10989 5.496556 CATGTAAACCACCAGTCAATCCTA 58.503 41.667 0.00 0.00 0.00 2.94
4669 11002 6.127535 CCAGTCAATCCTAAATGCTCACAAAT 60.128 38.462 0.00 0.00 0.00 2.32
4697 11030 9.757227 AAAAATTAACACTTTAGCTGTATGCAA 57.243 25.926 0.00 0.00 45.94 4.08
4698 11031 8.970691 AAATTAACACTTTAGCTGTATGCAAG 57.029 30.769 0.00 0.00 45.94 4.01
4699 11032 7.687941 ATTAACACTTTAGCTGTATGCAAGT 57.312 32.000 0.00 0.00 45.94 3.16
4700 11033 5.613358 AACACTTTAGCTGTATGCAAGTC 57.387 39.130 0.00 0.00 45.94 3.01
4701 11034 4.641396 ACACTTTAGCTGTATGCAAGTCA 58.359 39.130 0.00 0.00 45.94 3.41
4702 11035 4.452455 ACACTTTAGCTGTATGCAAGTCAC 59.548 41.667 0.00 0.00 45.94 3.67
4703 11036 4.003648 ACTTTAGCTGTATGCAAGTCACC 58.996 43.478 0.00 0.00 45.94 4.02
4704 11037 3.981071 TTAGCTGTATGCAAGTCACCT 57.019 42.857 0.00 0.00 45.94 4.00
4705 11038 2.105006 AGCTGTATGCAAGTCACCTG 57.895 50.000 0.00 0.00 45.94 4.00
4715 11345 8.584157 TGTATGCAAGTCACCTGAAAATTAATT 58.416 29.630 0.00 0.00 0.00 1.40
4720 11350 7.307930 GCAAGTCACCTGAAAATTAATTTTGGG 60.308 37.037 26.69 25.85 39.86 4.12
4724 11354 7.877612 GTCACCTGAAAATTAATTTTGGGTCAT 59.122 33.333 27.57 15.16 39.86 3.06
4755 11385 1.278985 TGCACCATCGATTTCACCTCT 59.721 47.619 0.00 0.00 0.00 3.69
4757 11387 1.667724 CACCATCGATTTCACCTCTGC 59.332 52.381 0.00 0.00 0.00 4.26
4758 11388 1.556911 ACCATCGATTTCACCTCTGCT 59.443 47.619 0.00 0.00 0.00 4.24
4759 11389 2.026822 ACCATCGATTTCACCTCTGCTT 60.027 45.455 0.00 0.00 0.00 3.91
4787 11425 1.662044 GGCTGTTTTGTGAGCTGGG 59.338 57.895 0.00 0.00 35.42 4.45
4792 11430 2.202395 TTTTGTGAGCTGGGCTGCC 61.202 57.895 11.05 11.05 39.88 4.85
4803 11441 0.106268 TGGGCTGCCTTTTTGACTGA 60.106 50.000 19.68 0.00 0.00 3.41
4804 11442 0.315251 GGGCTGCCTTTTTGACTGAC 59.685 55.000 19.68 0.00 0.00 3.51
4805 11443 0.315251 GGCTGCCTTTTTGACTGACC 59.685 55.000 12.43 0.00 0.00 4.02
4806 11444 0.040067 GCTGCCTTTTTGACTGACCG 60.040 55.000 0.00 0.00 0.00 4.79
4807 11445 0.040067 CTGCCTTTTTGACTGACCGC 60.040 55.000 0.00 0.00 0.00 5.68
4808 11446 0.749818 TGCCTTTTTGACTGACCGCA 60.750 50.000 0.00 0.00 0.00 5.69
4809 11447 0.598065 GCCTTTTTGACTGACCGCAT 59.402 50.000 0.00 0.00 0.00 4.73
4810 11448 1.810151 GCCTTTTTGACTGACCGCATA 59.190 47.619 0.00 0.00 0.00 3.14
4811 11449 2.423538 GCCTTTTTGACTGACCGCATAT 59.576 45.455 0.00 0.00 0.00 1.78
4812 11450 3.625764 GCCTTTTTGACTGACCGCATATA 59.374 43.478 0.00 0.00 0.00 0.86
4813 11451 4.495844 GCCTTTTTGACTGACCGCATATAC 60.496 45.833 0.00 0.00 0.00 1.47
4814 11452 4.634004 CCTTTTTGACTGACCGCATATACA 59.366 41.667 0.00 0.00 0.00 2.29
4815 11453 5.220662 CCTTTTTGACTGACCGCATATACAG 60.221 44.000 0.00 0.00 36.58 2.74
4816 11454 3.452755 TTGACTGACCGCATATACAGG 57.547 47.619 0.00 0.00 35.08 4.00
4817 11455 2.384828 TGACTGACCGCATATACAGGT 58.615 47.619 0.00 0.00 41.63 4.00
4823 11461 2.384828 ACCGCATATACAGGTCAGTCA 58.615 47.619 0.00 0.00 31.69 3.41
4824 11462 2.764010 ACCGCATATACAGGTCAGTCAA 59.236 45.455 0.00 0.00 31.69 3.18
4825 11463 3.388024 ACCGCATATACAGGTCAGTCAAT 59.612 43.478 0.00 0.00 31.69 2.57
4826 11464 4.141711 ACCGCATATACAGGTCAGTCAATT 60.142 41.667 0.00 0.00 31.69 2.32
4827 11465 4.816385 CCGCATATACAGGTCAGTCAATTT 59.184 41.667 0.00 0.00 0.00 1.82
4828 11466 5.277490 CCGCATATACAGGTCAGTCAATTTG 60.277 44.000 0.00 0.00 0.00 2.32
4829 11467 5.514279 GCATATACAGGTCAGTCAATTTGC 58.486 41.667 0.00 0.00 0.00 3.68
4830 11468 5.297776 GCATATACAGGTCAGTCAATTTGCT 59.702 40.000 0.00 0.00 0.00 3.91
4831 11469 6.483307 GCATATACAGGTCAGTCAATTTGCTA 59.517 38.462 0.00 0.00 0.00 3.49
4836 11474 2.162408 GGTCAGTCAATTTGCTACTGGC 59.838 50.000 14.72 13.48 43.48 4.85
4915 11682 8.211116 TGTTTTTCTGTTTTGATTGATGCATT 57.789 26.923 0.00 0.00 0.00 3.56
4918 11685 7.424227 TTTCTGTTTTGATTGATGCATTTCC 57.576 32.000 0.00 0.00 0.00 3.13
4922 11689 5.221884 TGTTTTGATTGATGCATTTCCCCTT 60.222 36.000 0.00 0.00 0.00 3.95
4984 11751 7.948034 TTGTAGGTATTTTTAGGATGTTGGG 57.052 36.000 0.00 0.00 0.00 4.12
5025 11792 6.435430 ACACGAATACAATGCAATATGTGT 57.565 33.333 11.97 8.85 32.49 3.72
5035 11802 8.172159 ACAATGCAATATGTGTGAAAATTACG 57.828 30.769 0.00 0.00 0.00 3.18
5089 11857 6.094742 TCAAAAGTGCAATTAGACAGTTGTGA 59.905 34.615 0.00 9.86 39.84 3.58
5147 11917 4.494597 AAACAGTAATACGAATGACGCG 57.505 40.909 3.53 3.53 46.94 6.01
5160 11930 4.651994 GAATGACGCGAATTCATTGTTCT 58.348 39.130 23.17 4.05 42.53 3.01
5165 11935 6.020984 TGACGCGAATTCATTGTTCTTTATG 58.979 36.000 15.93 0.00 0.00 1.90
5245 12015 8.082242 GGTAATACCAATGCCACTAATTCATTC 58.918 37.037 4.24 0.00 38.42 2.67
5246 12016 6.655078 ATACCAATGCCACTAATTCATTCC 57.345 37.500 0.00 0.00 0.00 3.01
5249 12019 5.127682 ACCAATGCCACTAATTCATTCCTTC 59.872 40.000 0.00 0.00 0.00 3.46
5331 12103 8.931905 AAAAAGCGCAATTTTTGTGTATATTG 57.068 26.923 16.52 0.00 40.07 1.90
5332 12104 7.650834 AAAGCGCAATTTTTGTGTATATTGT 57.349 28.000 11.47 0.00 42.92 2.71
5333 12105 6.630676 AGCGCAATTTTTGTGTATATTGTG 57.369 33.333 11.47 0.00 42.92 3.33
5334 12106 6.155827 AGCGCAATTTTTGTGTATATTGTGT 58.844 32.000 11.47 0.00 42.92 3.72
5335 12107 6.089283 AGCGCAATTTTTGTGTATATTGTGTG 59.911 34.615 11.47 0.00 42.92 3.82
5336 12108 6.232788 CGCAATTTTTGTGTATATTGTGTGC 58.767 36.000 0.00 0.00 35.10 4.57
5337 12109 6.128982 CGCAATTTTTGTGTATATTGTGTGCA 60.129 34.615 0.00 0.00 35.10 4.57
5338 12110 7.008859 GCAATTTTTGTGTATATTGTGTGCAC 58.991 34.615 10.75 10.75 32.10 4.57
5339 12111 7.307042 GCAATTTTTGTGTATATTGTGTGCACA 60.307 33.333 17.42 17.42 39.98 4.57
5340 12112 8.710551 CAATTTTTGTGTATATTGTGTGCACAT 58.289 29.630 24.69 9.98 41.52 3.21
5341 12113 8.830201 ATTTTTGTGTATATTGTGTGCACATT 57.170 26.923 24.69 13.50 41.52 2.71
5342 12114 8.654230 TTTTTGTGTATATTGTGTGCACATTT 57.346 26.923 24.69 13.14 41.52 2.32
5343 12115 8.654230 TTTTGTGTATATTGTGTGCACATTTT 57.346 26.923 24.69 12.77 41.52 1.82
5344 12116 8.654230 TTTGTGTATATTGTGTGCACATTTTT 57.346 26.923 24.69 10.95 41.52 1.94
5400 12172 6.439675 TTCTTAAACGGTAATACCAATGCC 57.560 37.500 10.40 0.00 38.47 4.40
5401 12173 5.498393 TCTTAAACGGTAATACCAATGCCA 58.502 37.500 10.40 0.00 38.47 4.92
5402 12174 5.944599 TCTTAAACGGTAATACCAATGCCAA 59.055 36.000 10.40 0.00 38.47 4.52
5403 12175 4.443913 AAACGGTAATACCAATGCCAAC 57.556 40.909 10.40 0.00 38.47 3.77
5404 12176 3.074675 ACGGTAATACCAATGCCAACA 57.925 42.857 10.40 0.00 38.47 3.33
5405 12177 3.422796 ACGGTAATACCAATGCCAACAA 58.577 40.909 10.40 0.00 38.47 2.83
5406 12178 4.020543 ACGGTAATACCAATGCCAACAAT 58.979 39.130 10.40 0.00 38.47 2.71
5407 12179 4.464597 ACGGTAATACCAATGCCAACAATT 59.535 37.500 10.40 0.00 38.47 2.32
5408 12180 5.040635 CGGTAATACCAATGCCAACAATTC 58.959 41.667 10.40 0.00 38.47 2.17
5409 12181 5.163561 CGGTAATACCAATGCCAACAATTCT 60.164 40.000 10.40 0.00 38.47 2.40
5410 12182 6.627065 CGGTAATACCAATGCCAACAATTCTT 60.627 38.462 10.40 0.00 38.47 2.52
5411 12183 7.102993 GGTAATACCAATGCCAACAATTCTTT 58.897 34.615 4.24 0.00 38.42 2.52
5412 12184 7.277760 GGTAATACCAATGCCAACAATTCTTTC 59.722 37.037 4.24 0.00 38.42 2.62
5413 12185 4.961438 ACCAATGCCAACAATTCTTTCT 57.039 36.364 0.00 0.00 0.00 2.52
5414 12186 5.294734 ACCAATGCCAACAATTCTTTCTT 57.705 34.783 0.00 0.00 0.00 2.52
5415 12187 5.683681 ACCAATGCCAACAATTCTTTCTTT 58.316 33.333 0.00 0.00 0.00 2.52
5416 12188 5.759763 ACCAATGCCAACAATTCTTTCTTTC 59.240 36.000 0.00 0.00 0.00 2.62
5417 12189 5.993441 CCAATGCCAACAATTCTTTCTTTCT 59.007 36.000 0.00 0.00 0.00 2.52
5418 12190 6.484308 CCAATGCCAACAATTCTTTCTTTCTT 59.516 34.615 0.00 0.00 0.00 2.52
5419 12191 7.656948 CCAATGCCAACAATTCTTTCTTTCTTA 59.343 33.333 0.00 0.00 0.00 2.10
5420 12192 8.706035 CAATGCCAACAATTCTTTCTTTCTTAG 58.294 33.333 0.00 0.00 0.00 2.18
5421 12193 7.581213 TGCCAACAATTCTTTCTTTCTTAGA 57.419 32.000 0.00 0.00 0.00 2.10
5422 12194 8.006298 TGCCAACAATTCTTTCTTTCTTAGAA 57.994 30.769 0.00 0.00 41.11 2.10
5479 12251 9.819267 AAAGACTAATACTAATGCCACTAAGTC 57.181 33.333 0.00 0.00 0.00 3.01
5480 12252 8.534954 AGACTAATACTAATGCCACTAAGTCA 57.465 34.615 0.00 0.00 33.70 3.41
5481 12253 9.148879 AGACTAATACTAATGCCACTAAGTCAT 57.851 33.333 0.00 0.00 33.70 3.06
5482 12254 9.765795 GACTAATACTAATGCCACTAAGTCATT 57.234 33.333 0.00 0.00 35.02 2.57
5487 12259 7.158099 ACTAATGCCACTAAGTCATTTTTCC 57.842 36.000 0.00 0.00 33.13 3.13
5488 12260 6.948309 ACTAATGCCACTAAGTCATTTTTCCT 59.052 34.615 0.00 0.00 33.13 3.36
5489 12261 6.670695 AATGCCACTAAGTCATTTTTCCTT 57.329 33.333 0.00 0.00 0.00 3.36
5490 12262 7.775053 AATGCCACTAAGTCATTTTTCCTTA 57.225 32.000 0.00 0.00 0.00 2.69
5491 12263 7.961326 ATGCCACTAAGTCATTTTTCCTTAT 57.039 32.000 0.00 0.00 0.00 1.73
5492 12264 9.474313 AATGCCACTAAGTCATTTTTCCTTATA 57.526 29.630 0.00 0.00 0.00 0.98
5493 12265 8.871629 TGCCACTAAGTCATTTTTCCTTATAA 57.128 30.769 0.00 0.00 0.00 0.98
5494 12266 8.736244 TGCCACTAAGTCATTTTTCCTTATAAC 58.264 33.333 0.00 0.00 0.00 1.89
5495 12267 8.736244 GCCACTAAGTCATTTTTCCTTATAACA 58.264 33.333 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.715088 CAGCGGTAAAAAGTTACTATAACTTGT 58.285 33.333 13.30 6.54 40.10 3.16
4 5 7.761249 TCCTCAGCGGTAAAAAGTTACTATAAC 59.239 37.037 0.00 0.00 39.73 1.89
8 9 5.726980 TCCTCAGCGGTAAAAAGTTACTA 57.273 39.130 0.00 0.00 39.73 1.82
10 11 4.331992 GGATCCTCAGCGGTAAAAAGTTAC 59.668 45.833 3.84 0.00 39.18 2.50
12 13 3.344515 GGATCCTCAGCGGTAAAAAGTT 58.655 45.455 3.84 0.00 0.00 2.66
13 14 2.677037 CGGATCCTCAGCGGTAAAAAGT 60.677 50.000 10.75 0.00 0.00 2.66
14 15 1.933853 CGGATCCTCAGCGGTAAAAAG 59.066 52.381 10.75 0.00 0.00 2.27
25 26 2.302260 GTCATCTGACTCGGATCCTCA 58.698 52.381 10.75 6.09 41.65 3.86
101 102 4.261405 CGTCTCTCTCTCTCTCTCTCTCTC 60.261 54.167 0.00 0.00 0.00 3.20
102 103 3.634448 CGTCTCTCTCTCTCTCTCTCTCT 59.366 52.174 0.00 0.00 0.00 3.10
103 104 3.243569 CCGTCTCTCTCTCTCTCTCTCTC 60.244 56.522 0.00 0.00 0.00 3.20
104 105 2.695666 CCGTCTCTCTCTCTCTCTCTCT 59.304 54.545 0.00 0.00 0.00 3.10
105 106 2.803492 GCCGTCTCTCTCTCTCTCTCTC 60.803 59.091 0.00 0.00 0.00 3.20
106 107 1.139058 GCCGTCTCTCTCTCTCTCTCT 59.861 57.143 0.00 0.00 0.00 3.10
107 108 1.583054 GCCGTCTCTCTCTCTCTCTC 58.417 60.000 0.00 0.00 0.00 3.20
108 109 0.179084 CGCCGTCTCTCTCTCTCTCT 60.179 60.000 0.00 0.00 0.00 3.10
109 110 0.179094 TCGCCGTCTCTCTCTCTCTC 60.179 60.000 0.00 0.00 0.00 3.20
110 111 0.468226 ATCGCCGTCTCTCTCTCTCT 59.532 55.000 0.00 0.00 0.00 3.10
341 357 4.549516 GGCGCCGGAGAGACGTAC 62.550 72.222 12.58 0.00 0.00 3.67
412 435 0.101399 ACTCGTCAGACATCCATCGC 59.899 55.000 0.41 0.00 0.00 4.58
416 439 3.092301 AGATGAACTCGTCAGACATCCA 58.908 45.455 0.41 0.00 40.43 3.41
417 440 3.443037 CAGATGAACTCGTCAGACATCC 58.557 50.000 0.41 0.00 40.43 3.51
418 441 2.857152 GCAGATGAACTCGTCAGACATC 59.143 50.000 0.41 0.00 40.43 3.06
419 442 2.232208 TGCAGATGAACTCGTCAGACAT 59.768 45.455 0.41 0.00 40.43 3.06
420 443 1.613437 TGCAGATGAACTCGTCAGACA 59.387 47.619 0.41 0.00 40.43 3.41
421 444 1.989165 GTGCAGATGAACTCGTCAGAC 59.011 52.381 1.94 0.00 40.43 3.51
422 445 1.067565 GGTGCAGATGAACTCGTCAGA 60.068 52.381 1.94 0.00 40.43 3.27
423 446 1.354040 GGTGCAGATGAACTCGTCAG 58.646 55.000 1.94 0.00 40.43 3.51
424 447 0.388520 CGGTGCAGATGAACTCGTCA 60.389 55.000 1.94 0.00 41.67 4.35
425 448 0.388649 ACGGTGCAGATGAACTCGTC 60.389 55.000 0.00 0.00 28.81 4.20
441 485 4.860907 AGACGTGCTTACTGTAAATAACGG 59.139 41.667 22.27 11.77 40.63 4.44
443 487 6.939551 TCAGACGTGCTTACTGTAAATAAC 57.060 37.500 0.00 0.36 33.93 1.89
452 496 4.689345 GTGGTAAAATCAGACGTGCTTACT 59.311 41.667 0.00 0.00 0.00 2.24
526 572 4.185394 CCCAACACCAACCAGTTAAAAAC 58.815 43.478 0.00 0.00 0.00 2.43
527 573 3.197983 CCCCAACACCAACCAGTTAAAAA 59.802 43.478 0.00 0.00 0.00 1.94
545 595 2.920912 GTCACCCGTCACTCCCCA 60.921 66.667 0.00 0.00 0.00 4.96
619 669 2.789917 CGGCTTGTGATGAGCAGC 59.210 61.111 0.00 0.00 41.89 5.25
664 719 4.416738 GTCCAGTCTGGCCTGCCC 62.417 72.222 14.64 0.00 37.47 5.36
718 773 4.821589 GCCCGAAGAGCCGAGTGG 62.822 72.222 0.00 0.00 38.77 4.00
798 853 6.603201 AGAGGCAAAAATAAAATCTCCATCGA 59.397 34.615 0.00 0.00 0.00 3.59
799 854 6.694411 CAGAGGCAAAAATAAAATCTCCATCG 59.306 38.462 0.00 0.00 0.00 3.84
800 855 6.982724 CCAGAGGCAAAAATAAAATCTCCATC 59.017 38.462 0.00 0.00 0.00 3.51
801 856 6.881570 CCAGAGGCAAAAATAAAATCTCCAT 58.118 36.000 0.00 0.00 0.00 3.41
802 857 6.284891 CCAGAGGCAAAAATAAAATCTCCA 57.715 37.500 0.00 0.00 0.00 3.86
930 987 3.026694 GCCGAGACTTTTACTACCCCTA 58.973 50.000 0.00 0.00 0.00 3.53
939 996 4.648651 AGCTTTAAAGGCCGAGACTTTTA 58.351 39.130 16.78 0.00 37.67 1.52
941 998 3.075148 GAGCTTTAAAGGCCGAGACTTT 58.925 45.455 16.78 9.30 43.90 2.66
942 999 2.701107 GAGCTTTAAAGGCCGAGACTT 58.299 47.619 16.78 0.00 28.57 3.01
988 1057 1.412079 TGGTCAAGCAAGCATTTGGT 58.588 45.000 0.00 0.00 46.37 3.67
989 1058 2.036217 TCTTGGTCAAGCAAGCATTTGG 59.964 45.455 15.34 0.00 38.28 3.28
990 1059 3.374220 TCTTGGTCAAGCAAGCATTTG 57.626 42.857 15.34 0.00 38.28 2.32
1058 1406 1.993948 GGAGGGGAGTACCACCACC 60.994 68.421 5.48 4.68 41.27 4.61
1059 1407 1.993948 GGGAGGGGAGTACCACCAC 60.994 68.421 8.78 3.46 41.27 4.16
1060 1408 2.453054 GGGAGGGGAGTACCACCA 59.547 66.667 8.78 0.00 41.27 4.17
1272 1663 0.105709 CCTTCCCCTCTCTCCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
1273 1664 0.105709 CCCTTCCCCTCTCTCCTCTC 60.106 65.000 0.00 0.00 0.00 3.20
1274 1665 0.556380 TCCCTTCCCCTCTCTCCTCT 60.556 60.000 0.00 0.00 0.00 3.69
1275 1666 0.105709 CTCCCTTCCCCTCTCTCCTC 60.106 65.000 0.00 0.00 0.00 3.71
1276 1667 1.598856 CCTCCCTTCCCCTCTCTCCT 61.599 65.000 0.00 0.00 0.00 3.69
1277 1668 1.074850 CCTCCCTTCCCCTCTCTCC 60.075 68.421 0.00 0.00 0.00 3.71
1278 1669 1.074850 CCCTCCCTTCCCCTCTCTC 60.075 68.421 0.00 0.00 0.00 3.20
1279 1670 2.652113 CCCCTCCCTTCCCCTCTCT 61.652 68.421 0.00 0.00 0.00 3.10
1280 1671 2.040359 CCCCTCCCTTCCCCTCTC 60.040 72.222 0.00 0.00 0.00 3.20
1281 1672 4.439901 GCCCCTCCCTTCCCCTCT 62.440 72.222 0.00 0.00 0.00 3.69
1284 1675 4.810184 TACGCCCCTCCCTTCCCC 62.810 72.222 0.00 0.00 0.00 4.81
1285 1676 2.689771 TTACGCCCCTCCCTTCCC 60.690 66.667 0.00 0.00 0.00 3.97
1286 1677 2.908796 CTTACGCCCCTCCCTTCC 59.091 66.667 0.00 0.00 0.00 3.46
1287 1678 1.911702 AAGCTTACGCCCCTCCCTTC 61.912 60.000 0.00 0.00 36.60 3.46
1288 1679 1.498176 AAAGCTTACGCCCCTCCCTT 61.498 55.000 0.00 0.00 36.60 3.95
1289 1680 1.498176 AAAAGCTTACGCCCCTCCCT 61.498 55.000 0.00 0.00 36.60 4.20
1290 1681 0.611062 AAAAAGCTTACGCCCCTCCC 60.611 55.000 0.00 0.00 36.60 4.30
1468 1860 9.553064 AGTATATATGCACAGGAAAGAAAGAAG 57.447 33.333 3.52 0.00 0.00 2.85
1469 1861 9.547753 GAGTATATATGCACAGGAAAGAAAGAA 57.452 33.333 3.52 0.00 0.00 2.52
1470 1862 8.150945 GGAGTATATATGCACAGGAAAGAAAGA 58.849 37.037 3.52 0.00 0.00 2.52
1471 1863 7.933577 TGGAGTATATATGCACAGGAAAGAAAG 59.066 37.037 3.52 0.00 0.00 2.62
1472 1864 7.801104 TGGAGTATATATGCACAGGAAAGAAA 58.199 34.615 3.52 0.00 0.00 2.52
1480 1872 5.660417 AGAGGGATGGAGTATATATGCACAG 59.340 44.000 3.52 0.00 0.00 3.66
1533 1942 5.710513 TTCAAGAACCACATGAATGAAGG 57.289 39.130 0.00 1.62 32.43 3.46
1544 1954 7.040132 AGGAAAGAGAAATGATTCAAGAACCAC 60.040 37.037 0.00 0.00 38.06 4.16
1620 2031 1.464376 GGCCAGTATAGAGCAGCGGA 61.464 60.000 0.00 0.00 0.00 5.54
1633 2044 3.903467 ACAGAAGAAGAAAAAGGCCAGT 58.097 40.909 5.01 0.00 0.00 4.00
1642 2053 7.065324 TCTGCGAAAAACTTACAGAAGAAGAAA 59.935 33.333 0.00 0.00 34.59 2.52
1643 2054 6.537301 TCTGCGAAAAACTTACAGAAGAAGAA 59.463 34.615 0.00 0.00 34.59 2.52
1653 2064 7.908193 TGAAAAGAATCTGCGAAAAACTTAC 57.092 32.000 0.00 0.00 0.00 2.34
1668 2079 7.954835 TGATTCAAGAACCACATGAAAAGAAT 58.045 30.769 0.00 0.00 39.17 2.40
1749 2160 3.604582 CTCCTCACAAATCTCCTGAACC 58.395 50.000 0.00 0.00 0.00 3.62
1843 2258 9.168553 ACATCAAGGGTATCTAGACTACTACTA 57.831 37.037 0.00 0.00 0.00 1.82
1844 2259 7.940137 CACATCAAGGGTATCTAGACTACTACT 59.060 40.741 0.00 0.67 0.00 2.57
1845 2260 7.720515 ACACATCAAGGGTATCTAGACTACTAC 59.279 40.741 0.00 0.00 26.29 2.73
1846 2261 7.813331 ACACATCAAGGGTATCTAGACTACTA 58.187 38.462 0.00 0.00 26.29 1.82
1847 2262 6.674573 ACACATCAAGGGTATCTAGACTACT 58.325 40.000 0.00 0.00 26.29 2.57
1848 2263 6.963083 ACACATCAAGGGTATCTAGACTAC 57.037 41.667 0.00 0.00 26.29 2.73
1960 2375 6.171932 TCGCAACGAGCAAGAAAATATAAA 57.828 33.333 0.00 0.00 46.13 1.40
1963 2378 4.882671 ATCGCAACGAGCAAGAAAATAT 57.117 36.364 0.00 0.00 46.13 1.28
2037 2452 3.917988 ACCAAAGCAAGCTGAAAATAGC 58.082 40.909 0.00 0.00 44.01 2.97
2086 2501 5.412286 TGGTTACTACTTTGCCGAAAATACC 59.588 40.000 0.00 0.00 0.00 2.73
2094 2510 1.400494 GCCATGGTTACTACTTTGCCG 59.600 52.381 14.67 0.00 0.00 5.69
2120 2537 3.197790 CCAGATGCAGGGAACGCG 61.198 66.667 3.53 3.53 33.51 6.01
2229 2647 3.704566 GGGGTGGGAAGATTTATGGAAAC 59.295 47.826 0.00 0.00 0.00 2.78
2242 2660 1.761711 TAGTGGAAATGGGGTGGGAA 58.238 50.000 0.00 0.00 0.00 3.97
2243 2661 1.761711 TTAGTGGAAATGGGGTGGGA 58.238 50.000 0.00 0.00 0.00 4.37
2244 2662 2.666317 GATTAGTGGAAATGGGGTGGG 58.334 52.381 0.00 0.00 0.00 4.61
2245 2663 2.024464 TGGATTAGTGGAAATGGGGTGG 60.024 50.000 0.00 0.00 0.00 4.61
2246 2664 3.380471 TGGATTAGTGGAAATGGGGTG 57.620 47.619 0.00 0.00 0.00 4.61
2247 2665 3.708451 GTTGGATTAGTGGAAATGGGGT 58.292 45.455 0.00 0.00 0.00 4.95
2248 2666 2.687935 CGTTGGATTAGTGGAAATGGGG 59.312 50.000 0.00 0.00 0.00 4.96
2249 2667 3.128589 CACGTTGGATTAGTGGAAATGGG 59.871 47.826 0.00 0.00 32.68 4.00
2250 2668 3.427503 GCACGTTGGATTAGTGGAAATGG 60.428 47.826 0.00 0.00 36.48 3.16
2251 2669 3.190327 TGCACGTTGGATTAGTGGAAATG 59.810 43.478 0.00 0.00 36.48 2.32
2252 2670 3.417101 TGCACGTTGGATTAGTGGAAAT 58.583 40.909 0.00 0.00 36.48 2.17
2302 2720 6.073447 TCCTTTTCTACCAAGATATGCCAA 57.927 37.500 0.00 0.00 0.00 4.52
2323 2742 0.530870 GCCACTCTGACCGCTAATCC 60.531 60.000 0.00 0.00 0.00 3.01
2393 2812 3.195661 CAAGCGAACCTACATTCCTACC 58.804 50.000 0.00 0.00 0.00 3.18
2428 2847 2.969262 AGCTTTAGGGATCTAGCAGTCC 59.031 50.000 0.00 1.31 0.00 3.85
2541 3065 4.567318 CTGCCAACAGCCTATCCC 57.433 61.111 0.00 0.00 42.71 3.85
2574 3098 1.921982 TTAGGGTGTTGCATGCACAT 58.078 45.000 22.58 9.29 38.51 3.21
2762 4785 7.442062 CCCAAGAAACTTTTTCATGTTAGCAAT 59.558 33.333 1.72 0.00 0.00 3.56
2765 4788 5.177511 GCCCAAGAAACTTTTTCATGTTAGC 59.822 40.000 1.72 0.09 0.00 3.09
2917 4964 6.584553 TCCATAGGGTAGTTCACAAGGATACT 60.585 42.308 0.00 0.00 42.83 2.12
2918 4965 5.601313 TCCATAGGGTAGTTCACAAGGATAC 59.399 44.000 0.00 0.00 34.93 2.24
2937 4984 0.108662 CACGAGTGCAGTGCTCCATA 60.109 55.000 17.60 0.00 32.52 2.74
2958 5018 3.056607 ACATAAAACACTGCAGCATTCCC 60.057 43.478 15.27 0.00 0.00 3.97
3002 5062 6.644347 ACTCCTAACTGATGATGTTACCAAG 58.356 40.000 0.00 0.00 0.00 3.61
3016 5077 5.651139 TGCCTAACACTACTACTCCTAACTG 59.349 44.000 0.00 0.00 0.00 3.16
3017 5078 5.824421 TGCCTAACACTACTACTCCTAACT 58.176 41.667 0.00 0.00 0.00 2.24
3018 5079 6.521151 TTGCCTAACACTACTACTCCTAAC 57.479 41.667 0.00 0.00 0.00 2.34
3019 5080 7.543359 TTTTGCCTAACACTACTACTCCTAA 57.457 36.000 0.00 0.00 0.00 2.69
3020 5081 7.729124 ATTTTGCCTAACACTACTACTCCTA 57.271 36.000 0.00 0.00 0.00 2.94
3021 5082 6.622427 ATTTTGCCTAACACTACTACTCCT 57.378 37.500 0.00 0.00 0.00 3.69
3022 5083 8.255905 TCTAATTTTGCCTAACACTACTACTCC 58.744 37.037 0.00 0.00 0.00 3.85
3023 5084 9.649167 TTCTAATTTTGCCTAACACTACTACTC 57.351 33.333 0.00 0.00 0.00 2.59
3039 5101 6.785191 ACGACCATAGCATGTTCTAATTTTG 58.215 36.000 0.00 0.00 0.00 2.44
3041 5103 6.349300 AGACGACCATAGCATGTTCTAATTT 58.651 36.000 0.00 0.00 0.00 1.82
3050 5112 6.372937 TCTCTCTATTAGACGACCATAGCATG 59.627 42.308 0.00 0.00 0.00 4.06
3142 9012 6.932356 ACTAAAATCAGTAGCATCACCATG 57.068 37.500 0.00 0.00 0.00 3.66
3173 9057 1.242076 CAACTCAACTTGGGCCTCAG 58.758 55.000 4.53 3.08 0.00 3.35
3189 9078 1.203994 TCGGCCTAGAACTAGCACAAC 59.796 52.381 0.00 0.00 31.95 3.32
3225 9115 6.363577 TCAGACAGACACTTTTTCATGAAC 57.636 37.500 7.89 0.00 0.00 3.18
3239 9130 4.576216 ATCACGTCCATATCAGACAGAC 57.424 45.455 0.00 0.00 33.70 3.51
3252 9143 2.736144 TCCACACAGTAATCACGTCC 57.264 50.000 0.00 0.00 0.00 4.79
3295 9188 1.534595 GGAAGCAGAGAAACAGTGCAG 59.465 52.381 0.00 0.00 39.80 4.41
3563 9634 0.035881 TGAGGTTCTGCTGGAGCTTG 59.964 55.000 4.96 0.00 42.66 4.01
3662 9908 4.984161 CCAGAAAAACAAGAATCGCAACAT 59.016 37.500 0.00 0.00 0.00 2.71
3999 10301 1.730121 CGTTCATCATGCTGTTGCCAC 60.730 52.381 0.00 0.00 38.71 5.01
4180 10482 2.666526 GCTATGCCGGTGCTAGCC 60.667 66.667 13.29 3.27 37.82 3.93
4206 10508 2.303175 CACTACCTGCTACTCCTCCTC 58.697 57.143 0.00 0.00 0.00 3.71
4228 10533 2.806019 GCTACTACCATCCTCGACTCGA 60.806 54.545 0.29 0.29 0.00 4.04
4229 10534 1.532007 GCTACTACCATCCTCGACTCG 59.468 57.143 0.00 0.00 0.00 4.18
4230 10535 1.532007 CGCTACTACCATCCTCGACTC 59.468 57.143 0.00 0.00 0.00 3.36
4231 10536 1.595466 CGCTACTACCATCCTCGACT 58.405 55.000 0.00 0.00 0.00 4.18
4232 10537 0.592148 CCGCTACTACCATCCTCGAC 59.408 60.000 0.00 0.00 0.00 4.20
4262 10567 0.039527 GCCAACGCAACAACCTTAGG 60.040 55.000 0.00 0.00 34.03 2.69
4342 10647 0.238289 ACATCCAAAACAAGCGAGCG 59.762 50.000 0.00 0.00 0.00 5.03
4468 10773 4.993584 AGCACAATGAACACAACTAGAGAG 59.006 41.667 0.00 0.00 0.00 3.20
4469 10774 4.751600 CAGCACAATGAACACAACTAGAGA 59.248 41.667 0.00 0.00 0.00 3.10
4470 10775 4.083643 CCAGCACAATGAACACAACTAGAG 60.084 45.833 0.00 0.00 0.00 2.43
4471 10776 3.814842 CCAGCACAATGAACACAACTAGA 59.185 43.478 0.00 0.00 0.00 2.43
4472 10777 3.565482 ACCAGCACAATGAACACAACTAG 59.435 43.478 0.00 0.00 0.00 2.57
4473 10778 3.314913 CACCAGCACAATGAACACAACTA 59.685 43.478 0.00 0.00 0.00 2.24
4474 10779 2.099592 CACCAGCACAATGAACACAACT 59.900 45.455 0.00 0.00 0.00 3.16
4475 10780 2.159254 ACACCAGCACAATGAACACAAC 60.159 45.455 0.00 0.00 0.00 3.32
4476 10781 2.098614 ACACCAGCACAATGAACACAA 58.901 42.857 0.00 0.00 0.00 3.33
4477 10782 1.761449 ACACCAGCACAATGAACACA 58.239 45.000 0.00 0.00 0.00 3.72
4478 10783 2.869233 AACACCAGCACAATGAACAC 57.131 45.000 0.00 0.00 0.00 3.32
4479 10784 3.446873 AGAAAACACCAGCACAATGAACA 59.553 39.130 0.00 0.00 0.00 3.18
4480 10785 4.045636 AGAAAACACCAGCACAATGAAC 57.954 40.909 0.00 0.00 0.00 3.18
4481 10786 4.402155 AGAAGAAAACACCAGCACAATGAA 59.598 37.500 0.00 0.00 0.00 2.57
4482 10787 3.953612 AGAAGAAAACACCAGCACAATGA 59.046 39.130 0.00 0.00 0.00 2.57
4483 10788 4.311816 AGAAGAAAACACCAGCACAATG 57.688 40.909 0.00 0.00 0.00 2.82
4484 10789 4.402155 TGAAGAAGAAAACACCAGCACAAT 59.598 37.500 0.00 0.00 0.00 2.71
4485 10790 3.761218 TGAAGAAGAAAACACCAGCACAA 59.239 39.130 0.00 0.00 0.00 3.33
4486 10791 3.128589 GTGAAGAAGAAAACACCAGCACA 59.871 43.478 0.00 0.00 0.00 4.57
4487 10792 3.128589 TGTGAAGAAGAAAACACCAGCAC 59.871 43.478 0.00 0.00 33.08 4.40
4488 10793 3.351740 TGTGAAGAAGAAAACACCAGCA 58.648 40.909 0.00 0.00 33.08 4.41
4489 10794 4.293415 CATGTGAAGAAGAAAACACCAGC 58.707 43.478 0.00 0.00 33.08 4.85
4490 10795 4.293415 GCATGTGAAGAAGAAAACACCAG 58.707 43.478 0.00 0.00 33.08 4.00
4491 10796 3.068024 GGCATGTGAAGAAGAAAACACCA 59.932 43.478 0.00 0.00 33.08 4.17
4492 10797 3.319122 AGGCATGTGAAGAAGAAAACACC 59.681 43.478 0.00 0.00 33.08 4.16
4493 10798 4.276926 AGAGGCATGTGAAGAAGAAAACAC 59.723 41.667 0.00 0.00 0.00 3.32
4494 10799 4.464008 AGAGGCATGTGAAGAAGAAAACA 58.536 39.130 0.00 0.00 0.00 2.83
4495 10800 4.759183 AGAGAGGCATGTGAAGAAGAAAAC 59.241 41.667 0.00 0.00 0.00 2.43
4496 10801 4.978099 AGAGAGGCATGTGAAGAAGAAAA 58.022 39.130 0.00 0.00 0.00 2.29
4497 10802 4.285517 AGAGAGAGGCATGTGAAGAAGAAA 59.714 41.667 0.00 0.00 0.00 2.52
4498 10803 3.837146 AGAGAGAGGCATGTGAAGAAGAA 59.163 43.478 0.00 0.00 0.00 2.52
4499 10804 3.439154 AGAGAGAGGCATGTGAAGAAGA 58.561 45.455 0.00 0.00 0.00 2.87
4500 10805 3.891422 AGAGAGAGGCATGTGAAGAAG 57.109 47.619 0.00 0.00 0.00 2.85
4501 10806 3.131933 GCTAGAGAGAGGCATGTGAAGAA 59.868 47.826 0.00 0.00 0.00 2.52
4502 10807 2.692557 GCTAGAGAGAGGCATGTGAAGA 59.307 50.000 0.00 0.00 0.00 2.87
4503 10808 2.694628 AGCTAGAGAGAGGCATGTGAAG 59.305 50.000 0.00 0.00 0.00 3.02
4504 10809 2.429971 CAGCTAGAGAGAGGCATGTGAA 59.570 50.000 0.00 0.00 0.00 3.18
4505 10810 2.030371 CAGCTAGAGAGAGGCATGTGA 58.970 52.381 0.00 0.00 0.00 3.58
4506 10811 1.755959 ACAGCTAGAGAGAGGCATGTG 59.244 52.381 0.00 0.00 0.00 3.21
4507 10812 1.755959 CACAGCTAGAGAGAGGCATGT 59.244 52.381 0.00 0.00 0.00 3.21
4508 10813 1.755959 ACACAGCTAGAGAGAGGCATG 59.244 52.381 0.00 0.00 0.00 4.06
4509 10814 2.157640 ACACAGCTAGAGAGAGGCAT 57.842 50.000 0.00 0.00 0.00 4.40
4510 10815 1.821753 GAACACAGCTAGAGAGAGGCA 59.178 52.381 0.00 0.00 0.00 4.75
4511 10816 1.821753 TGAACACAGCTAGAGAGAGGC 59.178 52.381 0.00 0.00 0.00 4.70
4512 10817 4.081752 ACAATGAACACAGCTAGAGAGAGG 60.082 45.833 0.00 0.00 0.00 3.69
4513 10818 4.863689 CACAATGAACACAGCTAGAGAGAG 59.136 45.833 0.00 0.00 0.00 3.20
4514 10819 4.814147 CACAATGAACACAGCTAGAGAGA 58.186 43.478 0.00 0.00 0.00 3.10
4515 10820 3.370366 GCACAATGAACACAGCTAGAGAG 59.630 47.826 0.00 0.00 0.00 3.20
4620 10953 3.307782 GGTTTACATGCATGCATTTGAGC 59.692 43.478 30.32 21.34 33.90 4.26
4675 11008 7.390440 TGACTTGCATACAGCTAAAGTGTTAAT 59.610 33.333 0.00 0.00 45.94 1.40
4676 11009 6.708502 TGACTTGCATACAGCTAAAGTGTTAA 59.291 34.615 0.00 0.00 45.94 2.01
4678 11011 5.049405 GTGACTTGCATACAGCTAAAGTGTT 60.049 40.000 0.00 0.00 45.94 3.32
4681 11014 4.003648 GGTGACTTGCATACAGCTAAAGT 58.996 43.478 9.21 0.00 45.94 2.66
4683 11016 4.002982 CAGGTGACTTGCATACAGCTAAA 58.997 43.478 15.67 0.00 41.78 1.85
4684 11017 3.260632 TCAGGTGACTTGCATACAGCTAA 59.739 43.478 15.67 3.81 41.78 3.09
4686 11019 1.625315 TCAGGTGACTTGCATACAGCT 59.375 47.619 12.04 12.04 41.78 4.24
4687 11020 2.099141 TCAGGTGACTTGCATACAGC 57.901 50.000 8.66 8.66 40.21 4.40
4690 11023 8.986477 AATTAATTTTCAGGTGACTTGCATAC 57.014 30.769 0.00 0.00 40.21 2.39
4692 11025 8.776470 CAAAATTAATTTTCAGGTGACTTGCAT 58.224 29.630 20.71 0.00 36.79 3.96
4694 11027 7.307930 CCCAAAATTAATTTTCAGGTGACTTGC 60.308 37.037 20.71 0.00 36.79 4.01
4695 11028 7.714813 ACCCAAAATTAATTTTCAGGTGACTTG 59.285 33.333 28.30 15.02 39.82 3.16
4697 11030 7.070571 TGACCCAAAATTAATTTTCAGGTGACT 59.929 33.333 31.30 17.61 40.65 3.41
4698 11031 7.213678 TGACCCAAAATTAATTTTCAGGTGAC 58.786 34.615 31.30 23.23 40.65 3.67
4699 11032 7.366847 TGACCCAAAATTAATTTTCAGGTGA 57.633 32.000 31.30 25.47 40.65 4.02
4700 11033 8.620116 AATGACCCAAAATTAATTTTCAGGTG 57.380 30.769 31.30 21.46 40.65 4.00
4787 11425 0.040067 CGGTCAGTCAAAAAGGCAGC 60.040 55.000 0.00 0.00 0.00 5.25
4792 11430 5.220662 CCTGTATATGCGGTCAGTCAAAAAG 60.221 44.000 0.00 0.00 0.00 2.27
4803 11441 2.384828 TGACTGACCTGTATATGCGGT 58.615 47.619 6.95 6.95 0.00 5.68
4804 11442 3.452755 TTGACTGACCTGTATATGCGG 57.547 47.619 0.00 0.00 0.00 5.69
4805 11443 5.741425 CAAATTGACTGACCTGTATATGCG 58.259 41.667 0.00 0.00 0.00 4.73
4806 11444 5.297776 AGCAAATTGACTGACCTGTATATGC 59.702 40.000 0.00 0.00 0.00 3.14
4807 11445 6.932356 AGCAAATTGACTGACCTGTATATG 57.068 37.500 0.00 0.00 0.00 1.78
4808 11446 7.712639 CAGTAGCAAATTGACTGACCTGTATAT 59.287 37.037 8.59 0.00 42.65 0.86
4809 11447 7.041721 CAGTAGCAAATTGACTGACCTGTATA 58.958 38.462 8.59 0.00 42.65 1.47
4810 11448 5.877012 CAGTAGCAAATTGACTGACCTGTAT 59.123 40.000 8.59 0.00 42.65 2.29
4811 11449 5.237815 CAGTAGCAAATTGACTGACCTGTA 58.762 41.667 8.59 0.00 42.65 2.74
4812 11450 4.067896 CAGTAGCAAATTGACTGACCTGT 58.932 43.478 8.59 0.00 42.65 4.00
4813 11451 3.438087 CCAGTAGCAAATTGACTGACCTG 59.562 47.826 14.13 9.73 42.65 4.00
4814 11452 3.679389 CCAGTAGCAAATTGACTGACCT 58.321 45.455 14.13 0.00 42.65 3.85
4815 11453 2.162408 GCCAGTAGCAAATTGACTGACC 59.838 50.000 14.13 4.03 42.65 4.02
4816 11454 3.477899 GCCAGTAGCAAATTGACTGAC 57.522 47.619 14.13 1.80 42.65 3.51
4836 11474 5.705905 GGGCAGTATAGTTAATGGGCTTTAG 59.294 44.000 0.00 0.00 0.00 1.85
5015 11782 8.560576 AATAGCGTAATTTTCACACATATTGC 57.439 30.769 0.00 0.00 0.00 3.56
5056 11823 8.397906 TGTCTAATTGCACTTTTGATAGTATGC 58.602 33.333 0.00 0.00 0.00 3.14
5057 11824 9.926751 CTGTCTAATTGCACTTTTGATAGTATG 57.073 33.333 0.00 0.00 0.00 2.39
5129 11899 4.948864 ATTCGCGTCATTCGTATTACTG 57.051 40.909 5.77 0.00 42.13 2.74
5220 11990 8.082242 GGAATGAATTAGTGGCATTGGTATTAC 58.918 37.037 0.00 0.00 32.80 1.89
5374 12146 8.623030 GGCATTGGTATTACCGTTTAAGAATAA 58.377 33.333 8.32 0.00 42.58 1.40
5375 12147 7.774157 TGGCATTGGTATTACCGTTTAAGAATA 59.226 33.333 8.32 0.00 42.58 1.75
5376 12148 6.603997 TGGCATTGGTATTACCGTTTAAGAAT 59.396 34.615 8.32 0.00 42.58 2.40
5377 12149 5.944599 TGGCATTGGTATTACCGTTTAAGAA 59.055 36.000 8.32 0.00 42.58 2.52
5378 12150 5.498393 TGGCATTGGTATTACCGTTTAAGA 58.502 37.500 8.32 0.00 42.58 2.10
5379 12151 5.821516 TGGCATTGGTATTACCGTTTAAG 57.178 39.130 8.32 0.00 42.58 1.85
5380 12152 5.475909 TGTTGGCATTGGTATTACCGTTTAA 59.524 36.000 8.32 0.00 42.58 1.52
5381 12153 5.008331 TGTTGGCATTGGTATTACCGTTTA 58.992 37.500 8.32 0.00 42.58 2.01
5382 12154 3.827302 TGTTGGCATTGGTATTACCGTTT 59.173 39.130 8.32 0.00 42.58 3.60
5383 12155 3.422796 TGTTGGCATTGGTATTACCGTT 58.577 40.909 8.32 0.00 42.58 4.44
5384 12156 3.074675 TGTTGGCATTGGTATTACCGT 57.925 42.857 8.32 0.00 42.58 4.83
5385 12157 4.647424 ATTGTTGGCATTGGTATTACCG 57.353 40.909 8.32 0.00 42.58 4.02
5386 12158 6.220726 AGAATTGTTGGCATTGGTATTACC 57.779 37.500 5.87 5.87 39.22 2.85
5387 12159 8.034804 AGAAAGAATTGTTGGCATTGGTATTAC 58.965 33.333 0.00 0.00 0.00 1.89
5388 12160 8.133024 AGAAAGAATTGTTGGCATTGGTATTA 57.867 30.769 0.00 0.00 0.00 0.98
5389 12161 7.008021 AGAAAGAATTGTTGGCATTGGTATT 57.992 32.000 0.00 0.00 0.00 1.89
5390 12162 6.610075 AGAAAGAATTGTTGGCATTGGTAT 57.390 33.333 0.00 0.00 0.00 2.73
5391 12163 6.418057 AAGAAAGAATTGTTGGCATTGGTA 57.582 33.333 0.00 0.00 0.00 3.25
5392 12164 4.961438 AGAAAGAATTGTTGGCATTGGT 57.039 36.364 0.00 0.00 0.00 3.67
5393 12165 5.993441 AGAAAGAAAGAATTGTTGGCATTGG 59.007 36.000 0.00 0.00 0.00 3.16
5394 12166 7.486802 AAGAAAGAAAGAATTGTTGGCATTG 57.513 32.000 0.00 0.00 0.00 2.82
5395 12167 8.641541 TCTAAGAAAGAAAGAATTGTTGGCATT 58.358 29.630 0.00 0.00 0.00 3.56
5396 12168 8.181904 TCTAAGAAAGAAAGAATTGTTGGCAT 57.818 30.769 0.00 0.00 0.00 4.40
5397 12169 7.581213 TCTAAGAAAGAAAGAATTGTTGGCA 57.419 32.000 0.00 0.00 0.00 4.92
5398 12170 8.871686 TTTCTAAGAAAGAAAGAATTGTTGGC 57.128 30.769 0.00 0.00 46.88 4.52
5453 12225 9.819267 GACTTAGTGGCATTAGTATTAGTCTTT 57.181 33.333 10.03 0.00 0.00 2.52
5454 12226 8.978472 TGACTTAGTGGCATTAGTATTAGTCTT 58.022 33.333 15.41 0.00 31.89 3.01
5455 12227 8.534954 TGACTTAGTGGCATTAGTATTAGTCT 57.465 34.615 15.41 0.00 31.89 3.24
5468 12240 8.736244 GTTATAAGGAAAAATGACTTAGTGGCA 58.264 33.333 0.00 0.00 38.56 4.92
5469 12241 8.736244 TGTTATAAGGAAAAATGACTTAGTGGC 58.264 33.333 0.00 0.00 31.02 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.