Multiple sequence alignment - TraesCS4D01G062600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G062600 chr4D 100.000 4331 0 0 1 4331 38355853 38351523 0.000000e+00 7998.0
1 TraesCS4D01G062600 chr4D 81.228 1955 339 16 1337 3287 38446360 38448290 0.000000e+00 1552.0
2 TraesCS4D01G062600 chr4B 95.418 3928 112 25 6 3898 55757512 55753618 0.000000e+00 6194.0
3 TraesCS4D01G062600 chr4B 81.352 1952 336 17 1340 3287 55925229 55923302 0.000000e+00 1563.0
4 TraesCS4D01G062600 chr4B 100.000 31 0 0 3882 3912 55752765 55752735 1.680000e-04 58.4
5 TraesCS4D01G062600 chr4A 95.035 3847 115 33 1 3814 562451077 562454880 0.000000e+00 5976.0
6 TraesCS4D01G062600 chr4A 81.483 1955 334 18 1337 3287 562405164 562407094 0.000000e+00 1580.0
7 TraesCS4D01G062600 chr6D 82.338 1942 322 18 921 2850 67393017 67391085 0.000000e+00 1666.0
8 TraesCS4D01G062600 chr6D 85.714 175 21 3 4083 4253 93628844 93628670 9.570000e-42 182.0
9 TraesCS4D01G062600 chr6D 86.301 146 12 6 4064 4203 297306216 297306359 7.500000e-33 152.0
10 TraesCS4D01G062600 chr6A 81.804 1984 320 26 898 2850 84970747 84968774 0.000000e+00 1626.0
11 TraesCS4D01G062600 chr6A 82.474 194 30 4 4064 4253 606095800 606095607 2.680000e-37 167.0
12 TraesCS4D01G062600 chrUn 100.000 393 0 0 1247 1639 479657734 479657342 0.000000e+00 726.0
13 TraesCS4D01G062600 chr3D 86.082 194 22 5 4064 4253 516966434 516966242 2.040000e-48 204.0
14 TraesCS4D01G062600 chr3D 85.492 193 25 3 4064 4253 545256561 545256753 9.500000e-47 198.0
15 TraesCS4D01G062600 chr3A 84.974 193 20 7 4065 4253 471582062 471581875 2.060000e-43 187.0
16 TraesCS4D01G062600 chr6B 84.574 188 24 5 4065 4248 707212910 707213096 9.570000e-42 182.0
17 TraesCS4D01G062600 chr2A 91.339 127 9 2 4066 4190 619858207 619858333 5.760000e-39 172.0
18 TraesCS4D01G062600 chr5B 82.653 196 26 7 4064 4253 494034471 494034664 2.680000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G062600 chr4D 38351523 38355853 4330 True 7998.0 7998 100.000 1 4331 1 chr4D.!!$R1 4330
1 TraesCS4D01G062600 chr4D 38446360 38448290 1930 False 1552.0 1552 81.228 1337 3287 1 chr4D.!!$F1 1950
2 TraesCS4D01G062600 chr4B 55752735 55757512 4777 True 3126.2 6194 97.709 6 3912 2 chr4B.!!$R2 3906
3 TraesCS4D01G062600 chr4B 55923302 55925229 1927 True 1563.0 1563 81.352 1340 3287 1 chr4B.!!$R1 1947
4 TraesCS4D01G062600 chr4A 562451077 562454880 3803 False 5976.0 5976 95.035 1 3814 1 chr4A.!!$F2 3813
5 TraesCS4D01G062600 chr4A 562405164 562407094 1930 False 1580.0 1580 81.483 1337 3287 1 chr4A.!!$F1 1950
6 TraesCS4D01G062600 chr6D 67391085 67393017 1932 True 1666.0 1666 82.338 921 2850 1 chr6D.!!$R1 1929
7 TraesCS4D01G062600 chr6A 84968774 84970747 1973 True 1626.0 1626 81.804 898 2850 1 chr6A.!!$R1 1952

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.035725 GCGTAGGGGCTGGTTTAGTT 60.036 55.000 0.0 0.0 0.0 2.24 F
77 78 1.068748 GTCTGGCTGCAAACATGACTG 60.069 52.381 0.0 0.0 0.0 3.51 F
1806 1861 1.147153 GGAGGCAGAGGTGTATGGC 59.853 63.158 0.0 0.0 40.7 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1806 1861 6.471198 GGTTGTTTTTCTCTTTCTGGTAAACG 59.529 38.462 0.0 0.0 0.00 3.60 R
2562 2617 4.858692 CACGCCTCATGGAAAAATAAGTTG 59.141 41.667 0.0 0.0 34.57 3.16 R
3942 4025 0.104304 CGTATAGGGGTGTGGAGCAC 59.896 60.000 0.0 0.0 46.97 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.035725 GCGTAGGGGCTGGTTTAGTT 60.036 55.000 0.00 0.00 0.00 2.24
32 33 3.743269 CGTAGGGGCTGGTTTAGTTATGG 60.743 52.174 0.00 0.00 0.00 2.74
76 77 1.242076 GTCTGGCTGCAAACATGACT 58.758 50.000 0.00 0.00 0.00 3.41
77 78 1.068748 GTCTGGCTGCAAACATGACTG 60.069 52.381 0.00 0.00 0.00 3.51
109 113 6.197655 CCATTTGCAACAGATGATAATGTTCG 59.802 38.462 10.52 0.00 37.54 3.95
149 153 1.374758 GGAGCAGGTGAAGTGACCG 60.375 63.158 0.00 0.00 41.35 4.79
152 156 2.607892 GCAGGTGAAGTGACCGCAC 61.608 63.158 0.00 0.00 45.49 5.34
221 225 2.624838 CGACCCCTAGAAGCCGTAATTA 59.375 50.000 0.00 0.00 0.00 1.40
332 355 3.827876 GAGCCTACCTAGGTTCTATCCAC 59.172 52.174 22.11 1.67 46.46 4.02
350 373 9.409918 TCTATCCACTAGGTTGCTATATATCAC 57.590 37.037 0.00 0.00 35.89 3.06
427 451 6.127619 CCTTTTTAGCTTGTTCCCAGGAATAG 60.128 42.308 1.73 4.99 36.45 1.73
456 480 5.646467 TTCGCGTTTGTATATAAGAAGCC 57.354 39.130 5.77 0.00 0.00 4.35
749 780 7.509546 ACTTTTCAAGAGATCACAGTTCCTTA 58.490 34.615 0.00 0.00 0.00 2.69
910 941 3.963129 TCCAACTTTCCAAGTGTTCTGT 58.037 40.909 0.00 0.00 41.91 3.41
923 954 8.962679 TCCAAGTGTTCTGTTTTAACTACATTT 58.037 29.630 0.00 0.00 0.00 2.32
1806 1861 1.147153 GGAGGCAGAGGTGTATGGC 59.853 63.158 0.00 0.00 40.70 4.40
2514 2569 5.185635 AGCTGCCTGCAACTATTTGAAATTA 59.814 36.000 0.00 0.00 45.94 1.40
2562 2617 0.109132 CTGCGGCAAATCCAACTTCC 60.109 55.000 3.44 0.00 34.01 3.46
3130 3185 1.673033 CGAAGATGGCCCGTGATATCC 60.673 57.143 0.00 0.00 0.00 2.59
3331 3386 0.247736 AGCGGTGAAGATGGAGTGAC 59.752 55.000 0.00 0.00 0.00 3.67
3343 3400 0.537653 GGAGTGACTGGTCCCTTAGC 59.462 60.000 0.00 0.00 0.00 3.09
3498 3556 6.674694 ATTCTTGTCGAATTCAGATTCTGG 57.325 37.500 13.59 0.00 39.28 3.86
3525 3586 0.035056 ACATACTTGCAGGGTGAGGC 60.035 55.000 9.83 0.00 0.00 4.70
3544 3605 3.099267 GCTGTCGCCAGTGATATACTT 57.901 47.619 0.00 0.00 41.02 2.24
3612 3677 1.580845 ATCGTCTGCTGTTGGCTTGC 61.581 55.000 0.00 0.00 42.39 4.01
3654 3719 1.399440 CTGATTGTGCATCCAACCTCG 59.601 52.381 0.00 0.00 0.00 4.63
3667 3750 2.282462 CCTCGGCAGGCTGGTTTT 60.282 61.111 17.64 0.00 30.98 2.43
3672 3755 0.887933 CGGCAGGCTGGTTTTAATGT 59.112 50.000 17.64 0.00 0.00 2.71
3700 3783 3.727079 GCATGTTCGTCTCTTGCAGAATG 60.727 47.826 0.00 0.00 36.45 2.67
3705 3788 4.456280 TCGTCTCTTGCAGAATGTGTAT 57.544 40.909 0.00 0.00 39.31 2.29
3714 3797 3.752747 TGCAGAATGTGTATTGTGTGGAG 59.247 43.478 0.00 0.00 39.17 3.86
3720 3803 5.932619 ATGTGTATTGTGTGGAGCTAGTA 57.067 39.130 0.00 0.00 0.00 1.82
3760 3843 3.349022 TGGTAATTTCACGGTCCCATTC 58.651 45.455 0.00 0.00 0.00 2.67
3763 3846 1.463674 ATTTCACGGTCCCATTCTGC 58.536 50.000 0.00 0.00 0.00 4.26
3773 3856 1.139654 TCCCATTCTGCTCTTCCGATG 59.860 52.381 0.00 0.00 0.00 3.84
3788 3871 5.584649 TCTTCCGATGTAAAATGCCTTGTAG 59.415 40.000 0.00 0.00 0.00 2.74
3845 3928 3.265791 ACTCTGAAGAAAGCTTATGCCG 58.734 45.455 0.00 0.00 40.80 5.69
3856 3939 0.376152 CTTATGCCGTTGCTGAGCAG 59.624 55.000 7.39 0.00 40.61 4.24
3871 3954 2.293170 GAGCAGAGACCATTTTAGGCC 58.707 52.381 0.00 0.00 0.00 5.19
3879 3962 0.663153 CCATTTTAGGCCGTAGCAGC 59.337 55.000 0.00 0.00 42.56 5.25
3898 3981 6.561614 AGCAGCATGAAAAGATGTTATCTTG 58.438 36.000 0.00 0.00 44.07 3.02
3900 3983 6.252869 GCAGCATGAAAAGATGTTATCTTGTG 59.747 38.462 0.00 4.32 44.07 3.33
3901 3984 6.750501 CAGCATGAAAAGATGTTATCTTGTGG 59.249 38.462 0.00 0.00 44.07 4.17
3902 3985 7.362315 CAGCATGAAAAGATGTTATCTTGTGGA 60.362 37.037 0.00 0.00 44.07 4.02
3909 3992 4.164988 AGATGTTATCTTGTGGAGGGAAGG 59.835 45.833 0.00 0.00 35.76 3.46
3911 3994 3.519510 TGTTATCTTGTGGAGGGAAGGAG 59.480 47.826 0.00 0.00 0.00 3.69
3912 3995 2.350863 ATCTTGTGGAGGGAAGGAGT 57.649 50.000 0.00 0.00 0.00 3.85
3913 3996 1.352083 TCTTGTGGAGGGAAGGAGTG 58.648 55.000 0.00 0.00 0.00 3.51
3914 3997 1.132849 TCTTGTGGAGGGAAGGAGTGA 60.133 52.381 0.00 0.00 0.00 3.41
3915 3998 1.699634 CTTGTGGAGGGAAGGAGTGAA 59.300 52.381 0.00 0.00 0.00 3.18
3916 3999 1.814429 TGTGGAGGGAAGGAGTGAAA 58.186 50.000 0.00 0.00 0.00 2.69
3918 4001 2.106511 TGTGGAGGGAAGGAGTGAAAAG 59.893 50.000 0.00 0.00 0.00 2.27
3919 4002 1.705186 TGGAGGGAAGGAGTGAAAAGG 59.295 52.381 0.00 0.00 0.00 3.11
3920 4003 1.004862 GGAGGGAAGGAGTGAAAAGGG 59.995 57.143 0.00 0.00 0.00 3.95
3922 4005 2.375509 GAGGGAAGGAGTGAAAAGGGAA 59.624 50.000 0.00 0.00 0.00 3.97
3923 4006 2.789399 AGGGAAGGAGTGAAAAGGGAAA 59.211 45.455 0.00 0.00 0.00 3.13
3924 4007 3.206639 AGGGAAGGAGTGAAAAGGGAAAA 59.793 43.478 0.00 0.00 0.00 2.29
3925 4008 4.140686 AGGGAAGGAGTGAAAAGGGAAAAT 60.141 41.667 0.00 0.00 0.00 1.82
3926 4009 5.075900 AGGGAAGGAGTGAAAAGGGAAAATA 59.924 40.000 0.00 0.00 0.00 1.40
3927 4010 5.185249 GGGAAGGAGTGAAAAGGGAAAATAC 59.815 44.000 0.00 0.00 0.00 1.89
3929 4012 6.294564 GGAAGGAGTGAAAAGGGAAAATACAC 60.295 42.308 0.00 0.00 0.00 2.90
3930 4013 4.760204 AGGAGTGAAAAGGGAAAATACACG 59.240 41.667 0.00 0.00 33.00 4.49
3932 4015 3.824443 AGTGAAAAGGGAAAATACACGGG 59.176 43.478 0.00 0.00 33.00 5.28
3935 4018 2.124277 AAGGGAAAATACACGGGAGC 57.876 50.000 0.00 0.00 0.00 4.70
3936 4019 1.286248 AGGGAAAATACACGGGAGCT 58.714 50.000 0.00 0.00 0.00 4.09
3937 4020 1.209747 AGGGAAAATACACGGGAGCTC 59.790 52.381 4.71 4.71 0.00 4.09
3961 4044 0.104304 GTGCTCCACACCCCTATACG 59.896 60.000 0.00 0.00 44.02 3.06
3962 4045 0.032912 TGCTCCACACCCCTATACGA 60.033 55.000 0.00 0.00 0.00 3.43
3963 4046 1.117150 GCTCCACACCCCTATACGAA 58.883 55.000 0.00 0.00 0.00 3.85
3965 4048 2.895404 GCTCCACACCCCTATACGAATA 59.105 50.000 0.00 0.00 0.00 1.75
3966 4049 3.514309 GCTCCACACCCCTATACGAATAT 59.486 47.826 0.00 0.00 0.00 1.28
3967 4050 4.020485 GCTCCACACCCCTATACGAATATT 60.020 45.833 0.00 0.00 0.00 1.28
3969 4052 6.127140 GCTCCACACCCCTATACGAATATTAT 60.127 42.308 0.00 0.00 0.00 1.28
3970 4053 7.069085 GCTCCACACCCCTATACGAATATTATA 59.931 40.741 0.00 0.00 0.00 0.98
3971 4054 9.144298 CTCCACACCCCTATACGAATATTATAT 57.856 37.037 0.00 0.00 0.00 0.86
3974 4057 8.201464 CACACCCCTATACGAATATTATATGCA 58.799 37.037 0.00 0.00 0.00 3.96
3975 4058 8.764558 ACACCCCTATACGAATATTATATGCAA 58.235 33.333 0.00 0.00 0.00 4.08
3976 4059 9.607988 CACCCCTATACGAATATTATATGCAAA 57.392 33.333 0.00 0.00 0.00 3.68
4018 4130 7.552050 AACAAATCTGAAATTTGGGGTATCA 57.448 32.000 13.36 0.00 41.80 2.15
4021 4133 7.093771 ACAAATCTGAAATTTGGGGTATCAGAC 60.094 37.037 13.36 0.00 46.48 3.51
4022 4134 5.449553 ATCTGAAATTTGGGGTATCAGACC 58.550 41.667 5.98 0.00 46.48 3.85
4023 4135 5.194537 ATCTGAAATTTGGGGTATCAGACCT 59.805 40.000 5.98 0.00 46.48 3.85
4024 4136 6.861557 ATCTGAAATTTGGGGTATCAGACCTG 60.862 42.308 5.98 0.00 46.48 4.00
4032 4144 3.701532 GGTATCAGACCTGAGTTCTCG 57.298 52.381 5.90 0.00 45.89 4.04
4033 4145 3.280295 GGTATCAGACCTGAGTTCTCGA 58.720 50.000 5.90 0.00 45.89 4.04
4034 4146 3.886505 GGTATCAGACCTGAGTTCTCGAT 59.113 47.826 5.90 0.00 45.89 3.59
4035 4147 4.023536 GGTATCAGACCTGAGTTCTCGATC 60.024 50.000 5.90 0.00 45.89 3.69
4036 4148 3.358111 TCAGACCTGAGTTCTCGATCT 57.642 47.619 0.00 0.00 34.14 2.75
4037 4149 4.489306 TCAGACCTGAGTTCTCGATCTA 57.511 45.455 0.00 0.00 34.14 1.98
4039 4151 4.080807 TCAGACCTGAGTTCTCGATCTACT 60.081 45.833 0.00 0.00 34.14 2.57
4040 4152 4.272504 CAGACCTGAGTTCTCGATCTACTC 59.727 50.000 12.31 12.31 38.96 2.59
4041 4153 3.547746 ACCTGAGTTCTCGATCTACTCC 58.452 50.000 15.08 3.39 37.97 3.85
4042 4154 2.882137 CCTGAGTTCTCGATCTACTCCC 59.118 54.545 15.08 0.00 37.97 4.30
4044 4156 2.093075 TGAGTTCTCGATCTACTCCCGT 60.093 50.000 15.08 0.00 37.97 5.28
4045 4157 2.288458 GAGTTCTCGATCTACTCCCGTG 59.712 54.545 9.40 0.00 33.77 4.94
4047 4159 1.664873 TCTCGATCTACTCCCGTGTG 58.335 55.000 0.00 0.00 0.00 3.82
4048 4160 1.208776 TCTCGATCTACTCCCGTGTGA 59.791 52.381 0.00 0.00 0.00 3.58
4050 4162 2.422479 CTCGATCTACTCCCGTGTGAAA 59.578 50.000 0.00 0.00 0.00 2.69
4051 4163 2.163010 TCGATCTACTCCCGTGTGAAAC 59.837 50.000 0.00 0.00 37.35 2.78
4052 4164 2.163815 CGATCTACTCCCGTGTGAAACT 59.836 50.000 0.00 0.00 38.04 2.66
4053 4165 3.367087 CGATCTACTCCCGTGTGAAACTT 60.367 47.826 0.00 0.00 38.04 2.66
4055 4167 2.960384 TCTACTCCCGTGTGAAACTTCA 59.040 45.455 0.00 0.00 38.04 3.02
4056 4168 2.930826 ACTCCCGTGTGAAACTTCAT 57.069 45.000 0.00 0.00 39.73 2.57
4057 4169 4.768448 TCTACTCCCGTGTGAAACTTCATA 59.232 41.667 0.00 0.00 39.73 2.15
4058 4170 4.345859 ACTCCCGTGTGAAACTTCATAA 57.654 40.909 0.00 0.00 39.73 1.90
4059 4171 4.710324 ACTCCCGTGTGAAACTTCATAAA 58.290 39.130 0.00 0.00 39.73 1.40
4060 4172 5.127491 ACTCCCGTGTGAAACTTCATAAAA 58.873 37.500 0.00 0.00 39.73 1.52
4061 4173 5.591067 ACTCCCGTGTGAAACTTCATAAAAA 59.409 36.000 0.00 0.00 39.73 1.94
4085 4197 8.852671 AAAGTCCCAATAATAATCCATCCAAA 57.147 30.769 0.00 0.00 0.00 3.28
4086 4198 7.839680 AGTCCCAATAATAATCCATCCAAAC 57.160 36.000 0.00 0.00 0.00 2.93
4088 4200 7.506938 AGTCCCAATAATAATCCATCCAAACAG 59.493 37.037 0.00 0.00 0.00 3.16
4089 4201 7.287696 GTCCCAATAATAATCCATCCAAACAGT 59.712 37.037 0.00 0.00 0.00 3.55
4090 4202 7.843760 TCCCAATAATAATCCATCCAAACAGTT 59.156 33.333 0.00 0.00 0.00 3.16
4091 4203 8.485392 CCCAATAATAATCCATCCAAACAGTTT 58.515 33.333 0.00 0.00 0.00 2.66
4092 4204 9.889128 CCAATAATAATCCATCCAAACAGTTTT 57.111 29.630 0.00 0.00 0.00 2.43
4144 4256 9.491675 TTTTTGTCACGAATATGTTTCCTAGTA 57.508 29.630 0.00 0.00 0.00 1.82
4145 4257 9.661563 TTTTGTCACGAATATGTTTCCTAGTAT 57.338 29.630 0.00 0.00 0.00 2.12
4147 4259 9.661563 TTGTCACGAATATGTTTCCTAGTATTT 57.338 29.630 0.00 0.00 0.00 1.40
4148 4260 9.661563 TGTCACGAATATGTTTCCTAGTATTTT 57.338 29.630 0.00 0.00 0.00 1.82
4172 4284 6.939132 TTTACAAAATTTCACACGGGAGTA 57.061 33.333 0.00 0.00 44.67 2.59
4179 4383 0.750546 TCACACGGGAGTAGATCGGG 60.751 60.000 0.00 0.00 44.67 5.14
4198 4402 2.587522 GGAACCAGCTTTGATATCCCC 58.412 52.381 0.00 0.00 0.00 4.81
4199 4403 2.091885 GGAACCAGCTTTGATATCCCCA 60.092 50.000 0.00 0.00 0.00 4.96
4200 4404 3.627237 GGAACCAGCTTTGATATCCCCAA 60.627 47.826 0.00 0.00 0.00 4.12
4201 4405 3.756082 ACCAGCTTTGATATCCCCAAA 57.244 42.857 0.00 0.00 33.12 3.28
4202 4406 4.059773 ACCAGCTTTGATATCCCCAAAA 57.940 40.909 0.00 0.00 33.68 2.44
4204 4408 4.026052 CCAGCTTTGATATCCCCAAAACT 58.974 43.478 0.00 0.00 33.68 2.66
4205 4409 4.098501 CCAGCTTTGATATCCCCAAAACTC 59.901 45.833 0.00 0.00 33.68 3.01
4206 4410 4.706476 CAGCTTTGATATCCCCAAAACTCA 59.294 41.667 0.00 0.00 33.68 3.41
4207 4411 4.952335 AGCTTTGATATCCCCAAAACTCAG 59.048 41.667 0.00 0.00 33.68 3.35
4208 4412 4.706962 GCTTTGATATCCCCAAAACTCAGT 59.293 41.667 0.00 0.00 33.68 3.41
4209 4413 5.185828 GCTTTGATATCCCCAAAACTCAGTT 59.814 40.000 0.00 0.00 33.68 3.16
4210 4414 6.295292 GCTTTGATATCCCCAAAACTCAGTTT 60.295 38.462 0.00 0.00 37.34 2.66
4211 4415 7.610580 TTTGATATCCCCAAAACTCAGTTTT 57.389 32.000 9.89 9.89 45.06 2.43
4212 4416 7.610580 TTGATATCCCCAAAACTCAGTTTTT 57.389 32.000 13.09 1.21 42.11 1.94
4214 4418 8.713708 TGATATCCCCAAAACTCAGTTTTTAA 57.286 30.769 13.09 0.00 42.11 1.52
4215 4419 9.148879 TGATATCCCCAAAACTCAGTTTTTAAA 57.851 29.630 13.09 0.24 42.11 1.52
4216 4420 9.990360 GATATCCCCAAAACTCAGTTTTTAAAA 57.010 29.630 13.09 0.00 42.11 1.52
4275 4864 1.589414 ATCTTGTGGAGGGAAGGAGG 58.411 55.000 0.00 0.00 0.00 4.30
4276 4865 0.193574 TCTTGTGGAGGGAAGGAGGT 59.806 55.000 0.00 0.00 0.00 3.85
4277 4866 0.615850 CTTGTGGAGGGAAGGAGGTC 59.384 60.000 0.00 0.00 0.00 3.85
4278 4867 0.840722 TTGTGGAGGGAAGGAGGTCC 60.841 60.000 0.00 0.00 36.90 4.46
4297 4886 6.451064 GGTCCTAACCAGTTTATTCAATGG 57.549 41.667 0.00 0.00 45.68 3.16
4298 4887 5.163550 GGTCCTAACCAGTTTATTCAATGGC 60.164 44.000 0.00 0.00 45.68 4.40
4299 4888 5.652452 GTCCTAACCAGTTTATTCAATGGCT 59.348 40.000 0.00 0.00 36.21 4.75
4300 4889 6.152831 GTCCTAACCAGTTTATTCAATGGCTT 59.847 38.462 0.00 0.00 36.21 4.35
4301 4890 6.152661 TCCTAACCAGTTTATTCAATGGCTTG 59.847 38.462 0.00 0.00 36.21 4.01
4302 4891 5.806654 AACCAGTTTATTCAATGGCTTGT 57.193 34.783 0.00 0.00 36.21 3.16
4303 4892 5.806654 ACCAGTTTATTCAATGGCTTGTT 57.193 34.783 0.00 0.00 36.21 2.83
4304 4893 6.173427 ACCAGTTTATTCAATGGCTTGTTT 57.827 33.333 0.00 0.00 36.21 2.83
4305 4894 6.591001 ACCAGTTTATTCAATGGCTTGTTTT 58.409 32.000 0.00 0.00 36.21 2.43
4306 4895 7.731054 ACCAGTTTATTCAATGGCTTGTTTTA 58.269 30.769 0.00 0.00 36.21 1.52
4307 4896 8.207545 ACCAGTTTATTCAATGGCTTGTTTTAA 58.792 29.630 0.00 0.00 36.21 1.52
4308 4897 9.050601 CCAGTTTATTCAATGGCTTGTTTTAAA 57.949 29.630 0.00 0.00 33.87 1.52
4309 4898 9.862585 CAGTTTATTCAATGGCTTGTTTTAAAC 57.137 29.630 0.20 0.20 35.39 2.01
4310 4899 9.830975 AGTTTATTCAATGGCTTGTTTTAAACT 57.169 25.926 9.33 16.38 37.43 2.66
4312 4901 8.825667 TTATTCAATGGCTTGTTTTAAACTCC 57.174 30.769 9.33 8.06 33.87 3.85
4313 4902 5.860941 TCAATGGCTTGTTTTAAACTCCA 57.139 34.783 9.33 12.75 33.87 3.86
4314 4903 6.227298 TCAATGGCTTGTTTTAAACTCCAA 57.773 33.333 16.03 1.59 32.77 3.53
4315 4904 6.644347 TCAATGGCTTGTTTTAAACTCCAAA 58.356 32.000 16.03 1.24 32.77 3.28
4316 4905 6.760770 TCAATGGCTTGTTTTAAACTCCAAAG 59.239 34.615 16.03 9.83 32.77 2.77
4317 4906 5.923733 TGGCTTGTTTTAAACTCCAAAGA 57.076 34.783 9.33 0.00 0.00 2.52
4318 4907 5.901552 TGGCTTGTTTTAAACTCCAAAGAG 58.098 37.500 9.33 0.00 46.36 2.85
4319 4908 5.163457 TGGCTTGTTTTAAACTCCAAAGAGG 60.163 40.000 9.33 0.00 45.11 3.69
4320 4909 5.163447 GGCTTGTTTTAAACTCCAAAGAGGT 60.163 40.000 9.33 0.00 44.00 3.85
4321 4910 5.977725 GCTTGTTTTAAACTCCAAAGAGGTC 59.022 40.000 9.33 0.00 39.96 3.85
4322 4911 6.183360 GCTTGTTTTAAACTCCAAAGAGGTCT 60.183 38.462 9.33 0.00 39.96 3.85
4323 4912 7.012989 GCTTGTTTTAAACTCCAAAGAGGTCTA 59.987 37.037 9.33 0.00 39.96 2.59
4324 4913 8.990163 TTGTTTTAAACTCCAAAGAGGTCTAT 57.010 30.769 9.33 0.00 39.96 1.98
4330 4919 5.799827 ACTCCAAAGAGGTCTATATGAGC 57.200 43.478 0.00 0.00 45.11 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.434596 CCCATAACTAAACCAGCCCCTAC 60.435 52.174 0.00 0.00 0.00 3.18
18 19 5.126067 CCACATCTCCCATAACTAAACCAG 58.874 45.833 0.00 0.00 0.00 4.00
28 29 0.398522 ACTCGGCCACATCTCCCATA 60.399 55.000 2.24 0.00 0.00 2.74
32 33 1.473434 CCTAAACTCGGCCACATCTCC 60.473 57.143 2.24 0.00 0.00 3.71
59 60 0.388134 GCAGTCATGTTTGCAGCCAG 60.388 55.000 15.87 0.00 40.02 4.85
76 77 3.613689 TTGCAAATGGCTGCGGCA 61.614 55.556 21.31 13.53 45.74 5.69
77 78 3.113979 GTTGCAAATGGCTGCGGC 61.114 61.111 9.72 9.72 45.74 6.53
109 113 2.304761 TCTACCCCTGATGTGAACAACC 59.695 50.000 0.00 0.00 0.00 3.77
149 153 9.651718 GCTATAAACATGTTAATTAGTGAGTGC 57.348 33.333 12.39 1.30 0.00 4.40
221 225 6.440010 CAGAACTATCACATCTCCAGGGATAT 59.560 42.308 0.00 0.00 0.00 1.63
326 349 7.563924 GGGTGATATATAGCAACCTAGTGGATA 59.436 40.741 24.80 0.00 45.65 2.59
375 398 2.616510 GCCATAGCCAGAACTGTTGAGT 60.617 50.000 0.00 0.00 0.00 3.41
427 451 7.726079 TCTTATATACAAACGCGAATACATGC 58.274 34.615 15.93 0.00 0.00 4.06
495 519 5.198965 CCTGATTGGGAAATTCAGAGACAT 58.801 41.667 0.00 0.00 38.15 3.06
588 613 5.179452 AGCTGTAGAAAGCCAGGAAAATA 57.821 39.130 0.00 0.00 44.68 1.40
654 679 7.706607 GGATAGATGCTCGCAATATTATACACA 59.293 37.037 0.00 0.00 0.00 3.72
655 680 7.169982 GGGATAGATGCTCGCAATATTATACAC 59.830 40.741 0.00 0.00 0.00 2.90
767 798 4.512484 AGTAGAGCAGATTTTCTGGAAGC 58.488 43.478 6.64 0.00 44.43 3.86
1806 1861 6.471198 GGTTGTTTTTCTCTTTCTGGTAAACG 59.529 38.462 0.00 0.00 0.00 3.60
2562 2617 4.858692 CACGCCTCATGGAAAAATAAGTTG 59.141 41.667 0.00 0.00 34.57 3.16
3343 3400 2.838202 TCTGAAGGCTACCAACTAAGGG 59.162 50.000 0.00 0.00 0.00 3.95
3498 3556 1.369091 CTGCAAGTATGTCACGGGCC 61.369 60.000 0.00 0.00 32.20 5.80
3544 3605 2.164422 TCACACGGAACAACATGCAAAA 59.836 40.909 0.00 0.00 0.00 2.44
3586 3651 1.866601 CAACAGCAGACGATGACAACA 59.133 47.619 0.00 0.00 31.28 3.33
3612 3677 3.493503 GGACAGAAGGAAACGTACACAAG 59.506 47.826 0.00 0.00 0.00 3.16
3654 3719 4.736126 ATAACATTAAAACCAGCCTGCC 57.264 40.909 0.00 0.00 0.00 4.85
3667 3750 7.609760 AGAGACGAACATGCAAATAACATTA 57.390 32.000 0.00 0.00 0.00 1.90
3672 3755 4.215185 TGCAAGAGACGAACATGCAAATAA 59.785 37.500 0.00 0.00 43.39 1.40
3700 3783 5.459107 CGAATACTAGCTCCACACAATACAC 59.541 44.000 0.00 0.00 0.00 2.90
3705 3788 4.530710 AACGAATACTAGCTCCACACAA 57.469 40.909 0.00 0.00 0.00 3.33
3714 3797 7.995463 AAAGAGATCTGAAACGAATACTAGC 57.005 36.000 0.00 0.00 0.00 3.42
3720 3803 7.979444 TTACCAAAAGAGATCTGAAACGAAT 57.021 32.000 0.00 0.00 0.00 3.34
3773 3856 4.156182 GCGTGAACTACAAGGCATTTTAC 58.844 43.478 0.00 0.00 32.71 2.01
3845 3928 1.818642 AATGGTCTCTGCTCAGCAAC 58.181 50.000 0.00 0.00 38.41 4.17
3856 3939 2.210961 GCTACGGCCTAAAATGGTCTC 58.789 52.381 0.00 0.00 0.00 3.36
3871 3954 4.346734 AACATCTTTTCATGCTGCTACG 57.653 40.909 0.00 0.00 0.00 3.51
3898 3981 2.553247 CCTTTTCACTCCTTCCCTCCAC 60.553 54.545 0.00 0.00 0.00 4.02
3900 3983 1.004862 CCCTTTTCACTCCTTCCCTCC 59.995 57.143 0.00 0.00 0.00 4.30
3901 3984 1.985895 TCCCTTTTCACTCCTTCCCTC 59.014 52.381 0.00 0.00 0.00 4.30
3902 3985 2.133858 TCCCTTTTCACTCCTTCCCT 57.866 50.000 0.00 0.00 0.00 4.20
3903 3986 2.971901 TTCCCTTTTCACTCCTTCCC 57.028 50.000 0.00 0.00 0.00 3.97
3904 3987 5.773176 TGTATTTTCCCTTTTCACTCCTTCC 59.227 40.000 0.00 0.00 0.00 3.46
3909 3992 4.082949 CCCGTGTATTTTCCCTTTTCACTC 60.083 45.833 0.00 0.00 0.00 3.51
3911 3994 3.822167 TCCCGTGTATTTTCCCTTTTCAC 59.178 43.478 0.00 0.00 0.00 3.18
3912 3995 4.076394 CTCCCGTGTATTTTCCCTTTTCA 58.924 43.478 0.00 0.00 0.00 2.69
3913 3996 3.119602 GCTCCCGTGTATTTTCCCTTTTC 60.120 47.826 0.00 0.00 0.00 2.29
3914 3997 2.823747 GCTCCCGTGTATTTTCCCTTTT 59.176 45.455 0.00 0.00 0.00 2.27
3915 3998 2.041216 AGCTCCCGTGTATTTTCCCTTT 59.959 45.455 0.00 0.00 0.00 3.11
3916 3999 1.633945 AGCTCCCGTGTATTTTCCCTT 59.366 47.619 0.00 0.00 0.00 3.95
3918 4001 1.664873 GAGCTCCCGTGTATTTTCCC 58.335 55.000 0.87 0.00 0.00 3.97
3919 4002 1.664873 GGAGCTCCCGTGTATTTTCC 58.335 55.000 23.19 0.00 0.00 3.13
3930 4013 3.844090 GAGCACTCCGGAGCTCCC 61.844 72.222 31.56 16.22 45.82 4.30
3942 4025 0.104304 CGTATAGGGGTGTGGAGCAC 59.896 60.000 0.00 0.00 46.97 4.40
3944 4027 1.117150 TTCGTATAGGGGTGTGGAGC 58.883 55.000 0.00 0.00 0.00 4.70
3946 4029 8.920174 CATATAATATTCGTATAGGGGTGTGGA 58.080 37.037 0.00 0.00 0.00 4.02
3947 4030 7.656137 GCATATAATATTCGTATAGGGGTGTGG 59.344 40.741 0.00 0.00 0.00 4.17
3950 4033 9.607988 TTTGCATATAATATTCGTATAGGGGTG 57.392 33.333 0.00 0.00 0.00 4.61
3987 4099 9.506018 CCCCAAATTTCAGATTTGTTTATTTCT 57.494 29.630 9.76 0.00 37.32 2.52
3988 4100 9.283768 ACCCCAAATTTCAGATTTGTTTATTTC 57.716 29.630 9.76 0.00 37.32 2.17
3992 4104 9.094578 TGATACCCCAAATTTCAGATTTGTTTA 57.905 29.630 9.76 0.87 37.32 2.01
3994 4106 7.454380 TCTGATACCCCAAATTTCAGATTTGTT 59.546 33.333 9.76 0.00 38.25 2.83
3995 4107 6.953520 TCTGATACCCCAAATTTCAGATTTGT 59.046 34.615 9.76 0.00 38.25 2.83
3996 4108 7.260603 GTCTGATACCCCAAATTTCAGATTTG 58.739 38.462 6.95 4.86 43.23 2.32
4000 4112 4.855340 GGTCTGATACCCCAAATTTCAGA 58.145 43.478 0.62 0.62 43.16 3.27
4015 4127 3.897239 AGATCGAGAACTCAGGTCTGAT 58.103 45.455 0.00 0.08 39.13 2.90
4016 4128 3.358111 AGATCGAGAACTCAGGTCTGA 57.642 47.619 0.00 0.00 38.06 3.27
4018 4130 4.448210 GAGTAGATCGAGAACTCAGGTCT 58.552 47.826 15.79 0.00 39.54 3.85
4020 4132 3.547746 GGAGTAGATCGAGAACTCAGGT 58.452 50.000 19.97 0.00 41.15 4.00
4021 4133 2.882137 GGGAGTAGATCGAGAACTCAGG 59.118 54.545 19.97 0.00 41.15 3.86
4022 4134 2.546368 CGGGAGTAGATCGAGAACTCAG 59.454 54.545 19.97 12.57 41.15 3.35
4023 4135 2.093075 ACGGGAGTAGATCGAGAACTCA 60.093 50.000 19.97 0.00 44.60 3.41
4024 4136 2.288458 CACGGGAGTAGATCGAGAACTC 59.712 54.545 13.44 13.44 44.67 3.01
4026 4138 2.015587 ACACGGGAGTAGATCGAGAAC 58.984 52.381 0.00 0.00 44.67 3.01
4027 4139 2.014857 CACACGGGAGTAGATCGAGAA 58.985 52.381 0.00 0.00 44.67 2.87
4028 4140 1.208776 TCACACGGGAGTAGATCGAGA 59.791 52.381 0.00 0.00 44.67 4.04
4029 4141 1.664873 TCACACGGGAGTAGATCGAG 58.335 55.000 0.00 0.00 44.67 4.04
4030 4142 2.118313 TTCACACGGGAGTAGATCGA 57.882 50.000 0.00 0.00 44.67 3.59
4031 4143 2.163815 AGTTTCACACGGGAGTAGATCG 59.836 50.000 0.00 0.00 44.67 3.69
4032 4144 3.870633 AGTTTCACACGGGAGTAGATC 57.129 47.619 0.00 0.00 44.67 2.75
4033 4145 3.576982 TGAAGTTTCACACGGGAGTAGAT 59.423 43.478 0.00 0.00 34.62 1.98
4034 4146 2.960384 TGAAGTTTCACACGGGAGTAGA 59.040 45.455 0.00 0.00 34.62 2.59
4035 4147 3.380479 TGAAGTTTCACACGGGAGTAG 57.620 47.619 0.00 0.00 34.62 2.57
4036 4148 5.471556 TTATGAAGTTTCACACGGGAGTA 57.528 39.130 0.00 0.00 40.23 2.59
4037 4149 2.930826 ATGAAGTTTCACACGGGAGT 57.069 45.000 0.00 0.00 41.15 3.85
4058 4170 8.852671 TGGATGGATTATTATTGGGACTTTTT 57.147 30.769 0.00 0.00 0.00 1.94
4059 4171 8.852671 TTGGATGGATTATTATTGGGACTTTT 57.147 30.769 0.00 0.00 0.00 2.27
4060 4172 8.704668 GTTTGGATGGATTATTATTGGGACTTT 58.295 33.333 0.00 0.00 0.00 2.66
4061 4173 7.843760 TGTTTGGATGGATTATTATTGGGACTT 59.156 33.333 0.00 0.00 0.00 3.01
4062 4174 7.361438 TGTTTGGATGGATTATTATTGGGACT 58.639 34.615 0.00 0.00 0.00 3.85
4063 4175 7.287696 ACTGTTTGGATGGATTATTATTGGGAC 59.712 37.037 0.00 0.00 0.00 4.46
4064 4176 7.361438 ACTGTTTGGATGGATTATTATTGGGA 58.639 34.615 0.00 0.00 0.00 4.37
4065 4177 7.601705 ACTGTTTGGATGGATTATTATTGGG 57.398 36.000 0.00 0.00 0.00 4.12
4066 4178 9.889128 AAAACTGTTTGGATGGATTATTATTGG 57.111 29.630 6.53 0.00 0.00 3.16
4118 4230 8.385898 ACTAGGAAACATATTCGTGACAAAAA 57.614 30.769 0.00 0.00 0.00 1.94
4120 4232 9.661563 AATACTAGGAAACATATTCGTGACAAA 57.338 29.630 0.00 0.00 0.00 2.83
4121 4233 9.661563 AAATACTAGGAAACATATTCGTGACAA 57.338 29.630 0.00 0.00 0.00 3.18
4147 4259 6.631962 ACTCCCGTGTGAAATTTTGTAAAAA 58.368 32.000 0.00 0.00 0.00 1.94
4148 4260 6.210287 ACTCCCGTGTGAAATTTTGTAAAA 57.790 33.333 0.00 0.00 0.00 1.52
4149 4261 5.838531 ACTCCCGTGTGAAATTTTGTAAA 57.161 34.783 0.00 0.00 0.00 2.01
4150 4262 6.289834 TCTACTCCCGTGTGAAATTTTGTAA 58.710 36.000 0.00 0.00 0.00 2.41
4152 4264 4.710324 TCTACTCCCGTGTGAAATTTTGT 58.290 39.130 0.00 0.00 0.00 2.83
4153 4265 5.445939 CGATCTACTCCCGTGTGAAATTTTG 60.446 44.000 0.00 0.00 0.00 2.44
4154 4266 4.630069 CGATCTACTCCCGTGTGAAATTTT 59.370 41.667 0.00 0.00 0.00 1.82
4156 4268 3.430374 CCGATCTACTCCCGTGTGAAATT 60.430 47.826 0.00 0.00 0.00 1.82
4158 4270 1.475280 CCGATCTACTCCCGTGTGAAA 59.525 52.381 0.00 0.00 0.00 2.69
4159 4271 1.100510 CCGATCTACTCCCGTGTGAA 58.899 55.000 0.00 0.00 0.00 3.18
4165 4277 0.754217 TGGTTCCCGATCTACTCCCG 60.754 60.000 0.00 0.00 0.00 5.14
4166 4278 1.041437 CTGGTTCCCGATCTACTCCC 58.959 60.000 0.00 0.00 0.00 4.30
4168 4280 1.404843 AGCTGGTTCCCGATCTACTC 58.595 55.000 0.00 0.00 0.00 2.59
4170 4282 2.093658 TCAAAGCTGGTTCCCGATCTAC 60.094 50.000 0.00 0.00 0.00 2.59
4171 4283 2.184533 TCAAAGCTGGTTCCCGATCTA 58.815 47.619 0.00 0.00 0.00 1.98
4172 4284 0.984230 TCAAAGCTGGTTCCCGATCT 59.016 50.000 0.00 0.00 0.00 2.75
4179 4383 3.297134 TGGGGATATCAAAGCTGGTTC 57.703 47.619 4.83 0.00 0.00 3.62
4185 4389 4.706962 ACTGAGTTTTGGGGATATCAAAGC 59.293 41.667 4.83 0.00 35.81 3.51
4189 4393 8.713708 TTAAAAACTGAGTTTTGGGGATATCA 57.286 30.769 22.48 0.00 43.67 2.15
4190 4394 9.990360 TTTTAAAAACTGAGTTTTGGGGATATC 57.010 29.630 22.48 0.00 43.67 1.63
4239 4443 9.438228 TCCACAAGATAACATACGAACATTAAA 57.562 29.630 0.00 0.00 0.00 1.52
4240 4444 9.093970 CTCCACAAGATAACATACGAACATTAA 57.906 33.333 0.00 0.00 0.00 1.40
4241 4445 7.709182 CCTCCACAAGATAACATACGAACATTA 59.291 37.037 0.00 0.00 0.00 1.90
4242 4446 6.538742 CCTCCACAAGATAACATACGAACATT 59.461 38.462 0.00 0.00 0.00 2.71
4243 4447 6.049149 CCTCCACAAGATAACATACGAACAT 58.951 40.000 0.00 0.00 0.00 2.71
4246 4450 4.712829 TCCCTCCACAAGATAACATACGAA 59.287 41.667 0.00 0.00 0.00 3.85
4247 4451 4.283337 TCCCTCCACAAGATAACATACGA 58.717 43.478 0.00 0.00 0.00 3.43
4249 4453 5.130477 TCCTTCCCTCCACAAGATAACATAC 59.870 44.000 0.00 0.00 0.00 2.39
4250 4454 5.285401 TCCTTCCCTCCACAAGATAACATA 58.715 41.667 0.00 0.00 0.00 2.29
4275 4864 5.652452 AGCCATTGAATAAACTGGTTAGGAC 59.348 40.000 0.00 0.00 0.00 3.85
4276 4865 5.826643 AGCCATTGAATAAACTGGTTAGGA 58.173 37.500 0.00 0.00 0.00 2.94
4277 4866 6.071391 ACAAGCCATTGAATAAACTGGTTAGG 60.071 38.462 0.00 0.00 38.83 2.69
4278 4867 6.924111 ACAAGCCATTGAATAAACTGGTTAG 58.076 36.000 0.00 0.00 38.83 2.34
4279 4868 6.909550 ACAAGCCATTGAATAAACTGGTTA 57.090 33.333 0.00 0.00 38.83 2.85
4280 4869 5.806654 ACAAGCCATTGAATAAACTGGTT 57.193 34.783 0.00 0.00 38.83 3.67
4281 4870 5.806654 AACAAGCCATTGAATAAACTGGT 57.193 34.783 0.00 0.00 38.83 4.00
4282 4871 8.600449 TTAAAACAAGCCATTGAATAAACTGG 57.400 30.769 0.00 0.00 38.83 4.00
4283 4872 9.862585 GTTTAAAACAAGCCATTGAATAAACTG 57.137 29.630 0.00 0.00 38.83 3.16
4284 4873 9.830975 AGTTTAAAACAAGCCATTGAATAAACT 57.169 25.926 15.86 15.86 41.26 2.66
4286 4875 9.267084 GGAGTTTAAAACAAGCCATTGAATAAA 57.733 29.630 0.00 0.00 38.83 1.40
4287 4876 8.424918 TGGAGTTTAAAACAAGCCATTGAATAA 58.575 29.630 0.00 0.00 38.83 1.40
4288 4877 7.957002 TGGAGTTTAAAACAAGCCATTGAATA 58.043 30.769 0.00 0.00 38.83 1.75
4289 4878 6.825610 TGGAGTTTAAAACAAGCCATTGAAT 58.174 32.000 0.00 0.00 38.83 2.57
4290 4879 6.227298 TGGAGTTTAAAACAAGCCATTGAA 57.773 33.333 0.00 0.00 38.83 2.69
4291 4880 5.860941 TGGAGTTTAAAACAAGCCATTGA 57.139 34.783 0.00 0.00 38.83 2.57
4292 4881 6.760770 TCTTTGGAGTTTAAAACAAGCCATTG 59.239 34.615 0.00 0.00 42.46 2.82
4293 4882 6.883744 TCTTTGGAGTTTAAAACAAGCCATT 58.116 32.000 0.00 0.00 32.21 3.16
4294 4883 6.462909 CCTCTTTGGAGTTTAAAACAAGCCAT 60.463 38.462 0.00 0.00 37.86 4.40
4295 4884 5.163457 CCTCTTTGGAGTTTAAAACAAGCCA 60.163 40.000 0.00 0.00 37.86 4.75
4296 4885 5.163447 ACCTCTTTGGAGTTTAAAACAAGCC 60.163 40.000 0.00 0.00 37.86 4.35
4297 4886 5.902681 ACCTCTTTGGAGTTTAAAACAAGC 58.097 37.500 0.00 0.00 37.86 4.01
4298 4887 7.334844 AGACCTCTTTGGAGTTTAAAACAAG 57.665 36.000 0.00 0.00 37.86 3.16
4299 4888 8.990163 ATAGACCTCTTTGGAGTTTAAAACAA 57.010 30.769 0.00 0.00 37.86 2.83
4304 4893 8.204836 GCTCATATAGACCTCTTTGGAGTTTAA 58.795 37.037 0.00 0.00 37.86 1.52
4305 4894 7.727181 GCTCATATAGACCTCTTTGGAGTTTA 58.273 38.462 0.00 0.00 37.86 2.01
4306 4895 6.587273 GCTCATATAGACCTCTTTGGAGTTT 58.413 40.000 0.00 0.00 37.86 2.66
4307 4896 6.168270 GCTCATATAGACCTCTTTGGAGTT 57.832 41.667 0.00 0.00 37.86 3.01
4308 4897 5.799827 GCTCATATAGACCTCTTTGGAGT 57.200 43.478 0.00 0.00 37.86 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.