Multiple sequence alignment - TraesCS4D01G062200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G062200 chr4D 100.000 3512 0 0 3240 6751 37938470 37934959 0.000000e+00 6486.0
1 TraesCS4D01G062200 chr4D 100.000 2318 0 0 653 2970 37941057 37938740 0.000000e+00 4281.0
2 TraesCS4D01G062200 chr4D 100.000 235 0 0 1 235 37941709 37941475 1.040000e-117 435.0
3 TraesCS4D01G062200 chr4D 92.500 40 2 1 3668 3706 37938009 37937970 1.000000e-03 56.5
4 TraesCS4D01G062200 chr4D 92.500 40 2 1 3701 3740 37938042 37938004 1.000000e-03 56.5
5 TraesCS4D01G062200 chr4B 93.713 2036 88 25 953 2963 55323129 55321109 0.000000e+00 3014.0
6 TraesCS4D01G062200 chr4B 91.431 1202 53 19 5211 6389 55319267 55318093 0.000000e+00 1604.0
7 TraesCS4D01G062200 chr4B 87.486 919 39 22 4093 4953 55320166 55319266 0.000000e+00 990.0
8 TraesCS4D01G062200 chr4B 88.713 443 41 4 3681 4122 55320744 55320310 3.580000e-147 532.0
9 TraesCS4D01G062200 chr4B 92.857 154 10 1 65 218 55329470 55329622 8.810000e-54 222.0
10 TraesCS4D01G062200 chr4B 93.805 113 6 1 664 775 55326941 55326829 1.160000e-37 169.0
11 TraesCS4D01G062200 chr4B 85.811 148 14 3 6461 6608 55317963 55317823 4.220000e-32 150.0
12 TraesCS4D01G062200 chr4B 98.438 64 1 0 807 870 55326826 55326763 5.530000e-21 113.0
13 TraesCS4D01G062200 chr4B 100.000 33 0 0 6719 6751 55316007 55315975 2.030000e-05 62.1
14 TraesCS4D01G062200 chr4B 100.000 33 0 0 3674 3706 55320720 55320688 2.030000e-05 62.1
15 TraesCS4D01G062200 chr4B 96.875 32 1 0 908 939 55326768 55326737 3.000000e-03 54.7
16 TraesCS4D01G062200 chr4A 95.264 1098 35 8 917 2003 564167798 564166707 0.000000e+00 1724.0
17 TraesCS4D01G062200 chr4A 84.715 1773 154 48 3240 4953 564165775 564164061 0.000000e+00 1664.0
18 TraesCS4D01G062200 chr4A 95.075 467 14 7 2229 2690 564166449 564165987 0.000000e+00 726.0
19 TraesCS4D01G062200 chr4A 90.546 476 33 9 5211 5678 564164062 564163591 2.670000e-173 619.0
20 TraesCS4D01G062200 chr4A 87.427 342 41 2 1424 1763 113808352 113808693 6.350000e-105 392.0
21 TraesCS4D01G062200 chr4A 89.216 306 17 6 6258 6558 564160319 564160025 1.070000e-97 368.0
22 TraesCS4D01G062200 chr4A 96.970 198 4 2 2770 2965 564165987 564165790 1.400000e-86 331.0
23 TraesCS4D01G062200 chr4A 95.808 167 6 1 6091 6257 564160813 564160648 1.120000e-67 268.0
24 TraesCS4D01G062200 chr4A 96.094 128 3 1 2086 2213 564166707 564166582 2.470000e-49 207.0
25 TraesCS4D01G062200 chr4A 88.060 134 10 2 5873 6000 564163435 564163302 3.260000e-33 154.0
26 TraesCS4D01G062200 chr4A 91.667 72 2 2 6001 6068 564160884 564160813 5.570000e-16 97.1
27 TraesCS4D01G062200 chr5D 98.496 266 3 1 4948 5212 362053911 362053646 1.030000e-127 468.0
28 TraesCS4D01G062200 chr5D 96.970 66 2 0 1 66 118203193 118203258 1.990000e-20 111.0
29 TraesCS4D01G062200 chr3D 97.701 261 5 1 4952 5212 523190912 523190653 1.340000e-121 448.0
30 TraesCS4D01G062200 chr3D 97.328 262 7 0 4951 5212 586578934 586579195 4.800000e-121 446.0
31 TraesCS4D01G062200 chr3D 96.565 262 9 0 4951 5212 12278351 12278612 1.040000e-117 435.0
32 TraesCS4D01G062200 chr2D 97.338 263 7 0 4951 5213 204112945 204112683 1.340000e-121 448.0
33 TraesCS4D01G062200 chr2D 94.118 289 13 4 4936 5221 10825708 10825421 2.890000e-118 436.0
34 TraesCS4D01G062200 chr2D 97.101 69 2 0 1 69 522707190 522707122 4.280000e-22 117.0
35 TraesCS4D01G062200 chr1B 96.981 265 8 0 4949 5213 212061806 212061542 4.800000e-121 446.0
36 TraesCS4D01G062200 chr1B 89.796 196 15 4 2468 2661 601415217 601415409 5.230000e-61 246.0
37 TraesCS4D01G062200 chrUn 96.591 264 9 0 4949 5212 108799234 108799497 8.040000e-119 438.0
38 TraesCS4D01G062200 chr2A 95.018 281 11 3 4952 5230 167840107 167839828 8.040000e-119 438.0
39 TraesCS4D01G062200 chr2A 95.652 69 3 0 1 69 460326567 460326635 1.990000e-20 111.0
40 TraesCS4D01G062200 chr2A 87.209 86 8 3 2 85 186408194 186408278 2.000000e-15 95.3
41 TraesCS4D01G062200 chr5B 91.186 295 21 5 1472 1763 680720935 680720643 4.910000e-106 396.0
42 TraesCS4D01G062200 chr5B 90.508 295 23 5 1472 1763 436218405 436218697 1.060000e-102 385.0
43 TraesCS4D01G062200 chr5B 89.796 196 14 5 2468 2661 436219435 436219626 5.230000e-61 246.0
44 TraesCS4D01G062200 chr5B 87.374 198 15 5 2469 2664 680719830 680719641 1.140000e-52 219.0
45 TraesCS4D01G062200 chr5B 83.333 114 12 7 7 115 480252671 480252560 1.550000e-16 99.0
46 TraesCS4D01G062200 chr7A 90.169 295 24 5 1472 1763 686952018 686951726 4.940000e-101 379.0
47 TraesCS4D01G062200 chr7A 88.442 199 18 3 2468 2664 686950911 686950716 1.130000e-57 235.0
48 TraesCS4D01G062200 chr1A 90.845 284 22 4 1482 1763 264985992 264985711 1.780000e-100 377.0
49 TraesCS4D01G062200 chr1A 86.500 200 23 3 2467 2664 264984932 264984735 4.100000e-52 217.0
50 TraesCS4D01G062200 chr3A 89.492 295 26 5 1472 1763 643161736 643161444 1.070000e-97 368.0
51 TraesCS4D01G062200 chr3A 87.817 197 21 2 2469 2664 643160632 643160438 1.890000e-55 228.0
52 TraesCS4D01G062200 chr3A 94.521 73 4 0 1 73 692869635 692869563 5.530000e-21 113.0
53 TraesCS4D01G062200 chr6A 87.797 295 31 5 1472 1763 126955484 126955192 2.330000e-89 340.0
54 TraesCS4D01G062200 chr6A 88.144 194 20 3 2472 2664 126954404 126954213 1.890000e-55 228.0
55 TraesCS4D01G062200 chr3B 95.775 71 3 0 1 71 229819851 229819781 1.540000e-21 115.0
56 TraesCS4D01G062200 chr7B 96.970 66 2 0 1 66 700426572 700426637 1.990000e-20 111.0
57 TraesCS4D01G062200 chr7D 92.000 75 6 0 1 75 72938051 72938125 9.260000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G062200 chr4D 37934959 37941709 6750 True 2263.00 6486 97.0000 1 6751 5 chr4D.!!$R1 6750
1 TraesCS4D01G062200 chr4B 55315975 55326941 10966 True 675.09 3014 93.6272 664 6751 10 chr4B.!!$R1 6087
2 TraesCS4D01G062200 chr4A 564160025 564167798 7773 True 615.81 1724 92.3415 917 6558 10 chr4A.!!$R1 5641
3 TraesCS4D01G062200 chr5B 436218405 436219626 1221 False 315.50 385 90.1520 1472 2661 2 chr5B.!!$F1 1189
4 TraesCS4D01G062200 chr5B 680719641 680720935 1294 True 307.50 396 89.2800 1472 2664 2 chr5B.!!$R2 1192
5 TraesCS4D01G062200 chr7A 686950716 686952018 1302 True 307.00 379 89.3055 1472 2664 2 chr7A.!!$R1 1192
6 TraesCS4D01G062200 chr1A 264984735 264985992 1257 True 297.00 377 88.6725 1482 2664 2 chr1A.!!$R1 1182
7 TraesCS4D01G062200 chr3A 643160438 643161736 1298 True 298.00 368 88.6545 1472 2664 2 chr3A.!!$R2 1192
8 TraesCS4D01G062200 chr6A 126954213 126955484 1271 True 284.00 340 87.9705 1472 2664 2 chr6A.!!$R1 1192

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
883 885 0.028642 AATAGGAGCCTCCCCCATGT 60.029 55.0 7.26 0.0 37.19 3.21 F
884 886 0.028642 ATAGGAGCCTCCCCCATGTT 60.029 55.0 7.26 0.0 37.19 2.71 F
2745 6782 0.107654 AGGCCCTACTGTGCGATTTC 60.108 55.0 0.00 0.0 0.00 2.17 F
3496 7541 0.678395 AACAATGCGCCAAACATCCA 59.322 45.0 4.18 0.0 0.00 3.41 F
4083 8146 0.251386 TCTCGAGCAACTCTGGAGGT 60.251 55.0 7.81 0.0 44.72 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2177 5888 0.179018 AGACCAGGGACAGCACAAAC 60.179 55.0 0.0 0.0 0.00 2.93 R
2765 6802 1.979809 TCCCATCCCACAGGTACATT 58.020 50.0 0.0 0.0 0.00 2.71 R
3706 7767 0.251297 CTGGGTTTGTGGATGCCAGA 60.251 55.0 0.0 0.0 32.34 3.86 R
4825 9102 0.535335 AGCAAACTATTCGCCCGAGA 59.465 50.0 0.0 0.0 0.00 4.04 R
6052 12833 0.526211 TCCGATGGACACTTCACTCG 59.474 55.0 0.0 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.614792 ACTAAAGTTTGTAGAAAGTTGAGTCAT 57.385 29.630 14.49 0.00 40.25 3.06
45 46 8.738645 AAAGTTTGTAGAAAGTTGAGTCATCT 57.261 30.769 6.21 0.00 35.33 2.90
46 47 9.832445 AAAGTTTGTAGAAAGTTGAGTCATCTA 57.168 29.630 6.21 0.99 35.33 1.98
52 53 9.219603 TGTAGAAAGTTGAGTCATCTATTTTGG 57.780 33.333 4.14 0.00 0.00 3.28
53 54 9.436957 GTAGAAAGTTGAGTCATCTATTTTGGA 57.563 33.333 4.14 0.00 0.00 3.53
54 55 8.924511 AGAAAGTTGAGTCATCTATTTTGGAA 57.075 30.769 4.14 0.00 0.00 3.53
55 56 8.787852 AGAAAGTTGAGTCATCTATTTTGGAAC 58.212 33.333 4.14 0.00 0.00 3.62
56 57 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
57 58 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
58 59 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
59 60 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
60 61 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
61 62 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
62 63 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
63 64 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
64 65 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
65 66 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
66 67 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
67 68 2.019807 TTTGGAACGGAGGGAGTAGT 57.980 50.000 0.00 0.00 0.00 2.73
68 69 2.019807 TTGGAACGGAGGGAGTAGTT 57.980 50.000 0.00 0.00 0.00 2.24
69 70 2.019807 TGGAACGGAGGGAGTAGTTT 57.980 50.000 0.00 0.00 0.00 2.66
70 71 1.621814 TGGAACGGAGGGAGTAGTTTG 59.378 52.381 0.00 0.00 0.00 2.93
71 72 1.066358 GGAACGGAGGGAGTAGTTTGG 60.066 57.143 0.00 0.00 0.00 3.28
72 73 1.897802 GAACGGAGGGAGTAGTTTGGA 59.102 52.381 0.00 0.00 0.00 3.53
73 74 2.019807 ACGGAGGGAGTAGTTTGGAA 57.980 50.000 0.00 0.00 0.00 3.53
74 75 2.332117 ACGGAGGGAGTAGTTTGGAAA 58.668 47.619 0.00 0.00 0.00 3.13
75 76 2.707257 ACGGAGGGAGTAGTTTGGAAAA 59.293 45.455 0.00 0.00 0.00 2.29
76 77 3.136992 ACGGAGGGAGTAGTTTGGAAAAA 59.863 43.478 0.00 0.00 0.00 1.94
77 78 3.501062 CGGAGGGAGTAGTTTGGAAAAAC 59.499 47.826 0.00 0.00 0.00 2.43
78 79 4.466827 GGAGGGAGTAGTTTGGAAAAACA 58.533 43.478 4.34 0.00 35.20 2.83
79 80 5.077564 GGAGGGAGTAGTTTGGAAAAACAT 58.922 41.667 4.34 0.00 35.20 2.71
80 81 5.538813 GGAGGGAGTAGTTTGGAAAAACATT 59.461 40.000 4.34 0.00 35.20 2.71
81 82 6.294564 GGAGGGAGTAGTTTGGAAAAACATTC 60.295 42.308 4.34 0.00 35.20 2.67
82 83 6.133356 AGGGAGTAGTTTGGAAAAACATTCA 58.867 36.000 4.34 0.00 35.20 2.57
83 84 6.782494 AGGGAGTAGTTTGGAAAAACATTCAT 59.218 34.615 4.34 0.00 35.20 2.57
84 85 6.868339 GGGAGTAGTTTGGAAAAACATTCATG 59.132 38.462 4.34 0.00 35.20 3.07
85 86 6.868339 GGAGTAGTTTGGAAAAACATTCATGG 59.132 38.462 4.34 0.00 35.20 3.66
86 87 7.360113 AGTAGTTTGGAAAAACATTCATGGT 57.640 32.000 4.34 0.00 35.20 3.55
87 88 7.791029 AGTAGTTTGGAAAAACATTCATGGTT 58.209 30.769 4.34 0.00 39.91 3.67
89 90 9.535878 GTAGTTTGGAAAAACATTCATGGTTTA 57.464 29.630 3.23 0.00 46.22 2.01
90 91 8.661352 AGTTTGGAAAAACATTCATGGTTTAG 57.339 30.769 3.23 0.00 46.22 1.85
91 92 8.482128 AGTTTGGAAAAACATTCATGGTTTAGA 58.518 29.630 3.23 0.00 46.22 2.10
92 93 9.103861 GTTTGGAAAAACATTCATGGTTTAGAA 57.896 29.630 3.23 0.00 46.22 2.10
93 94 9.672673 TTTGGAAAAACATTCATGGTTTAGAAA 57.327 25.926 3.23 1.55 46.22 2.52
94 95 9.672673 TTGGAAAAACATTCATGGTTTAGAAAA 57.327 25.926 3.23 0.00 46.22 2.29
95 96 9.844257 TGGAAAAACATTCATGGTTTAGAAAAT 57.156 25.926 3.23 0.00 46.22 1.82
101 102 9.829507 AACATTCATGGTTTAGAAAATTGTTCA 57.170 25.926 0.00 0.00 0.00 3.18
102 103 9.260002 ACATTCATGGTTTAGAAAATTGTTCAC 57.740 29.630 0.00 0.00 0.00 3.18
103 104 9.480053 CATTCATGGTTTAGAAAATTGTTCACT 57.520 29.630 0.00 0.00 0.00 3.41
105 106 9.883142 TTCATGGTTTAGAAAATTGTTCACTTT 57.117 25.926 0.00 0.00 0.00 2.66
106 107 9.883142 TCATGGTTTAGAAAATTGTTCACTTTT 57.117 25.926 0.00 1.58 0.00 2.27
109 110 8.865001 TGGTTTAGAAAATTGTTCACTTTTTCG 58.135 29.630 11.18 0.00 41.79 3.46
110 111 9.078753 GGTTTAGAAAATTGTTCACTTTTTCGA 57.921 29.630 11.18 0.00 41.79 3.71
707 708 8.459635 TCTCTACAGTACAGTAAACATGATGTC 58.540 37.037 0.00 0.00 0.00 3.06
727 728 4.100963 TGTCGCAGTGAATATCCCACTATT 59.899 41.667 9.54 0.00 42.44 1.73
765 767 3.989817 TCAATCACGTTGTCATCTGTCAG 59.010 43.478 0.00 0.00 38.95 3.51
768 770 4.257267 TCACGTTGTCATCTGTCAGAAT 57.743 40.909 6.64 0.00 0.00 2.40
775 777 1.764723 TCATCTGTCAGAATCGGCCAT 59.235 47.619 6.64 0.00 0.00 4.40
777 779 3.387699 TCATCTGTCAGAATCGGCCATAA 59.612 43.478 6.64 0.00 0.00 1.90
778 780 3.459232 TCTGTCAGAATCGGCCATAAG 57.541 47.619 2.24 0.00 0.00 1.73
779 781 2.103094 TCTGTCAGAATCGGCCATAAGG 59.897 50.000 2.24 0.00 38.23 2.69
780 782 1.837439 TGTCAGAATCGGCCATAAGGT 59.163 47.619 2.24 0.00 37.19 3.50
781 783 2.158957 TGTCAGAATCGGCCATAAGGTC 60.159 50.000 2.24 0.00 37.19 3.85
782 784 2.103263 GTCAGAATCGGCCATAAGGTCT 59.897 50.000 2.24 0.00 37.38 3.85
783 785 3.321111 GTCAGAATCGGCCATAAGGTCTA 59.679 47.826 2.24 0.00 37.38 2.59
784 786 3.574396 TCAGAATCGGCCATAAGGTCTAG 59.426 47.826 2.24 0.00 37.38 2.43
785 787 3.574396 CAGAATCGGCCATAAGGTCTAGA 59.426 47.826 2.24 0.00 37.38 2.43
786 788 3.574826 AGAATCGGCCATAAGGTCTAGAC 59.425 47.826 14.87 14.87 37.38 2.59
787 789 2.750141 TCGGCCATAAGGTCTAGACT 57.250 50.000 21.88 6.36 37.38 3.24
788 790 2.584236 TCGGCCATAAGGTCTAGACTC 58.416 52.381 21.88 12.27 37.38 3.36
789 791 2.175069 TCGGCCATAAGGTCTAGACTCT 59.825 50.000 21.88 14.25 37.38 3.24
790 792 3.393609 TCGGCCATAAGGTCTAGACTCTA 59.606 47.826 21.88 13.52 37.38 2.43
791 793 3.754323 CGGCCATAAGGTCTAGACTCTAG 59.246 52.174 21.88 6.74 37.38 2.43
792 794 4.732065 GGCCATAAGGTCTAGACTCTAGT 58.268 47.826 21.88 6.78 36.28 2.57
793 795 4.521256 GGCCATAAGGTCTAGACTCTAGTG 59.479 50.000 21.88 16.41 36.28 2.74
794 796 4.521256 GCCATAAGGTCTAGACTCTAGTGG 59.479 50.000 21.88 22.80 37.19 4.00
795 797 4.521256 CCATAAGGTCTAGACTCTAGTGGC 59.479 50.000 21.88 3.29 0.00 5.01
796 798 5.381757 CATAAGGTCTAGACTCTAGTGGCT 58.618 45.833 21.88 5.33 0.00 4.75
797 799 6.466038 CCATAAGGTCTAGACTCTAGTGGCTA 60.466 46.154 21.88 7.17 0.00 3.93
798 800 4.699925 AGGTCTAGACTCTAGTGGCTAG 57.300 50.000 23.37 23.37 35.57 3.42
799 801 3.143728 GGTCTAGACTCTAGTGGCTAGC 58.856 54.545 24.20 19.26 34.36 3.42
800 802 3.433882 GGTCTAGACTCTAGTGGCTAGCA 60.434 52.174 24.20 13.59 34.36 3.49
801 803 4.394729 GTCTAGACTCTAGTGGCTAGCAT 58.605 47.826 24.20 4.22 34.36 3.79
802 804 4.454504 GTCTAGACTCTAGTGGCTAGCATC 59.545 50.000 24.20 15.19 34.36 3.91
803 805 3.304911 AGACTCTAGTGGCTAGCATCA 57.695 47.619 18.24 2.93 34.36 3.07
804 806 2.955660 AGACTCTAGTGGCTAGCATCAC 59.044 50.000 18.24 15.93 34.36 3.06
805 807 2.035321 GACTCTAGTGGCTAGCATCACC 59.965 54.545 18.24 0.00 34.36 4.02
839 841 4.750098 TCTTTTAGACAAAACTCGCTCCAG 59.250 41.667 0.00 0.00 30.52 3.86
870 872 2.690497 CACAGAGCTCTCCGAAATAGGA 59.310 50.000 14.96 0.00 38.80 2.94
877 879 2.836020 TCCGAAATAGGAGCCTCCC 58.164 57.895 7.26 0.00 37.19 4.30
878 880 0.763223 TCCGAAATAGGAGCCTCCCC 60.763 60.000 7.26 0.00 37.19 4.81
879 881 1.755384 CGAAATAGGAGCCTCCCCC 59.245 63.158 7.26 0.00 37.19 5.40
880 882 1.054406 CGAAATAGGAGCCTCCCCCA 61.054 60.000 7.26 0.00 37.19 4.96
881 883 1.450360 GAAATAGGAGCCTCCCCCAT 58.550 55.000 7.26 0.00 37.19 4.00
882 884 1.074566 GAAATAGGAGCCTCCCCCATG 59.925 57.143 7.26 0.00 37.19 3.66
883 885 0.028642 AATAGGAGCCTCCCCCATGT 60.029 55.000 7.26 0.00 37.19 3.21
884 886 0.028642 ATAGGAGCCTCCCCCATGTT 60.029 55.000 7.26 0.00 37.19 2.71
885 887 0.988145 TAGGAGCCTCCCCCATGTTG 60.988 60.000 7.26 0.00 37.19 3.33
886 888 2.276740 GAGCCTCCCCCATGTTGG 59.723 66.667 0.00 0.00 37.25 3.77
887 889 4.066139 AGCCTCCCCCATGTTGGC 62.066 66.667 0.00 0.00 43.52 4.52
889 891 4.047125 CCTCCCCCATGTTGGCGT 62.047 66.667 0.00 0.00 35.79 5.68
890 892 2.035626 CTCCCCCATGTTGGCGTT 59.964 61.111 0.00 0.00 35.79 4.84
891 893 1.606313 CTCCCCCATGTTGGCGTTT 60.606 57.895 0.00 0.00 35.79 3.60
892 894 0.322997 CTCCCCCATGTTGGCGTTTA 60.323 55.000 0.00 0.00 35.79 2.01
893 895 0.112606 TCCCCCATGTTGGCGTTTAA 59.887 50.000 0.00 0.00 35.79 1.52
894 896 0.530288 CCCCCATGTTGGCGTTTAAG 59.470 55.000 0.00 0.00 35.79 1.85
895 897 0.530288 CCCCATGTTGGCGTTTAAGG 59.470 55.000 0.00 0.00 35.79 2.69
896 898 0.530288 CCCATGTTGGCGTTTAAGGG 59.470 55.000 0.00 0.00 35.79 3.95
897 899 0.530288 CCATGTTGGCGTTTAAGGGG 59.470 55.000 0.00 0.00 0.00 4.79
898 900 0.108851 CATGTTGGCGTTTAAGGGGC 60.109 55.000 0.00 0.00 0.00 5.80
899 901 0.251608 ATGTTGGCGTTTAAGGGGCT 60.252 50.000 3.66 0.00 0.00 5.19
900 902 1.175983 TGTTGGCGTTTAAGGGGCTG 61.176 55.000 3.66 0.00 0.00 4.85
901 903 2.272447 TTGGCGTTTAAGGGGCTGC 61.272 57.895 0.00 0.00 0.00 5.25
902 904 2.675075 GGCGTTTAAGGGGCTGCA 60.675 61.111 0.50 0.00 0.00 4.41
903 905 2.052104 GGCGTTTAAGGGGCTGCAT 61.052 57.895 0.50 0.00 0.00 3.96
904 906 1.139520 GCGTTTAAGGGGCTGCATG 59.860 57.895 0.50 0.00 0.00 4.06
905 907 1.595093 GCGTTTAAGGGGCTGCATGT 61.595 55.000 0.50 0.00 0.00 3.21
906 908 0.887933 CGTTTAAGGGGCTGCATGTT 59.112 50.000 0.50 0.00 0.00 2.71
907 909 2.088423 CGTTTAAGGGGCTGCATGTTA 58.912 47.619 0.50 0.00 0.00 2.41
908 910 2.490115 CGTTTAAGGGGCTGCATGTTAA 59.510 45.455 0.50 0.00 0.00 2.01
909 911 3.130340 CGTTTAAGGGGCTGCATGTTAAT 59.870 43.478 0.50 0.00 0.00 1.40
910 912 4.381505 CGTTTAAGGGGCTGCATGTTAATT 60.382 41.667 0.50 0.00 0.00 1.40
911 913 4.734398 TTAAGGGGCTGCATGTTAATTG 57.266 40.909 0.50 0.00 0.00 2.32
912 914 1.488390 AGGGGCTGCATGTTAATTGG 58.512 50.000 0.50 0.00 0.00 3.16
956 4552 4.227527 ACAAGGCCCTTTAGTTGCTATAGT 59.772 41.667 0.00 0.00 0.00 2.12
1136 4739 2.754472 CTCACCAACTTCATCGTGACA 58.246 47.619 0.00 0.00 32.12 3.58
1375 4978 0.170339 GCACGCCTGTTAATTGGACC 59.830 55.000 1.49 0.00 0.00 4.46
1386 4989 1.789576 AATTGGACCAGGGTTCGCCT 61.790 55.000 0.00 0.00 37.45 5.52
1400 5003 2.288961 TCGCCTTCTAGGTTTAAGCG 57.711 50.000 0.00 0.00 37.80 4.68
1456 5059 1.620822 AGTTGGGGTGATGCTGTTTC 58.379 50.000 0.00 0.00 0.00 2.78
1559 5162 8.417106 TCTAGTCAGTTAATATTCTTGAGGCAG 58.583 37.037 0.00 0.00 0.00 4.85
1821 5457 3.393278 ACTTGGGTTAGTTGGTGCTCTTA 59.607 43.478 0.00 0.00 0.00 2.10
1891 5530 4.693566 TCCAAAGTTACGTTAATGGCTCAG 59.306 41.667 0.00 0.00 0.00 3.35
1901 5540 4.642885 CGTTAATGGCTCAGGGGAAATAAA 59.357 41.667 0.00 0.00 0.00 1.40
2076 5787 6.319405 TCATGTTACTCACATTGCATTGCTAT 59.681 34.615 10.49 4.88 44.40 2.97
2077 5788 7.498570 TCATGTTACTCACATTGCATTGCTATA 59.501 33.333 10.49 0.00 44.40 1.31
2078 5789 7.806409 TGTTACTCACATTGCATTGCTATAT 57.194 32.000 10.49 0.00 0.00 0.86
2154 5865 3.042682 TGGTTCTGTCTGGTTGGACTTA 58.957 45.455 0.00 0.00 37.16 2.24
2155 5866 3.650942 TGGTTCTGTCTGGTTGGACTTAT 59.349 43.478 0.00 0.00 37.16 1.73
2177 5888 1.349357 GCTAGATAAGGCTTGGAGGGG 59.651 57.143 10.69 0.00 0.00 4.79
2353 6363 6.127925 TGCTCTATGGTTAGCAGTTGAAATTG 60.128 38.462 0.00 0.00 43.56 2.32
2522 6553 6.163476 TGTACTGTACACTTTGGCTATCTTG 58.837 40.000 16.26 0.00 32.89 3.02
2582 6619 6.708285 TCTTAGGTCTTAGTTTGGCCTTTAG 58.292 40.000 3.32 0.00 0.00 1.85
2591 6628 7.450323 TCTTAGTTTGGCCTTTAGCAGTAAATT 59.550 33.333 3.32 0.00 46.50 1.82
2671 6708 5.601662 TGACTGGTCTCACTTCTTTGTTAG 58.398 41.667 2.38 0.00 0.00 2.34
2740 6777 1.745489 GGAAAGGCCCTACTGTGCG 60.745 63.158 0.00 0.00 0.00 5.34
2745 6782 0.107654 AGGCCCTACTGTGCGATTTC 60.108 55.000 0.00 0.00 0.00 2.17
2760 6797 9.398170 CTGTGCGATTTCATATTTTATAAAGGG 57.602 33.333 0.00 0.00 0.00 3.95
2789 6832 2.009681 ACCTGTGGGATGGGAAAAAC 57.990 50.000 0.00 0.00 36.25 2.43
2791 6834 0.887933 CTGTGGGATGGGAAAAACCG 59.112 55.000 0.00 0.00 40.11 4.44
2877 6922 8.710835 AGTTCTTGCTCTATTTTAAGCTACTC 57.289 34.615 0.00 0.00 39.31 2.59
3269 7314 7.823745 AATCAGTTCAAAAACCAGACATAGT 57.176 32.000 0.00 0.00 35.92 2.12
3299 7344 7.342026 CCAGTTTATAAGGAAAACTAGGCCAAT 59.658 37.037 5.01 0.00 43.52 3.16
3366 7411 2.672651 CCGCATCAAGCACACCCA 60.673 61.111 0.00 0.00 46.13 4.51
3374 7419 1.039068 CAAGCACACCCACAAATCCA 58.961 50.000 0.00 0.00 0.00 3.41
3378 7423 1.819305 GCACACCCACAAATCCAGAGT 60.819 52.381 0.00 0.00 0.00 3.24
3392 7437 2.049063 GAGTGCTGCTCCGACGTT 60.049 61.111 0.00 0.00 38.27 3.99
3424 7469 3.028019 GAGTCGCAACGTCGCACA 61.028 61.111 0.00 0.00 0.00 4.57
3447 7492 1.672320 GGACGCCTTATAGCCCTCC 59.328 63.158 0.00 0.00 0.00 4.30
3448 7493 0.832559 GGACGCCTTATAGCCCTCCT 60.833 60.000 0.00 0.00 0.00 3.69
3451 7496 2.631545 GACGCCTTATAGCCCTCCTTAA 59.368 50.000 0.00 0.00 0.00 1.85
3463 7508 3.561313 GCCCTCCTTAAATGAGACAACCA 60.561 47.826 3.77 0.00 31.26 3.67
3473 7518 1.271001 TGAGACAACCACCTGCAGATG 60.271 52.381 17.39 8.67 0.00 2.90
3480 7525 1.133823 ACCACCTGCAGATGACAAACA 60.134 47.619 17.39 0.00 0.00 2.83
3491 7536 1.565305 TGACAAACAATGCGCCAAAC 58.435 45.000 4.18 0.00 0.00 2.93
3496 7541 0.678395 AACAATGCGCCAAACATCCA 59.322 45.000 4.18 0.00 0.00 3.41
3501 7546 2.639327 GCGCCAAACATCCAAGGCT 61.639 57.895 0.00 0.00 44.85 4.58
3534 7579 2.356793 CAGCCAGATCGATCCCGC 60.357 66.667 21.66 21.31 35.37 6.13
3535 7580 2.839632 AGCCAGATCGATCCCGCA 60.840 61.111 26.98 0.00 35.37 5.69
3537 7582 2.861101 GCCAGATCGATCCCGCAGA 61.861 63.158 21.66 0.00 35.37 4.26
3545 7590 1.658717 GATCCCGCAGATCGTGTCG 60.659 63.158 0.00 0.00 42.06 4.35
3569 7614 2.799371 CCGACGAGCTCACTACCC 59.201 66.667 15.40 0.00 0.00 3.69
3571 7616 1.716826 CCGACGAGCTCACTACCCTC 61.717 65.000 15.40 0.00 0.00 4.30
3586 7631 2.580867 CTCGCAGCACTAGGTCGC 60.581 66.667 0.00 0.00 0.00 5.19
3657 7718 2.751036 CATGGCGCACATCCACCA 60.751 61.111 10.83 0.00 37.84 4.17
3658 7719 2.122797 CATGGCGCACATCCACCAT 61.123 57.895 10.83 0.00 43.70 3.55
3664 7725 1.524621 GCACATCCACCATCCGGAG 60.525 63.158 11.34 0.00 35.56 4.63
3667 7728 3.550431 ATCCACCATCCGGAGCCG 61.550 66.667 11.34 1.06 35.56 5.52
3706 7767 0.323178 CCCAGATCACAAAGCAGCCT 60.323 55.000 0.00 0.00 0.00 4.58
3707 7768 1.093159 CCAGATCACAAAGCAGCCTC 58.907 55.000 0.00 0.00 0.00 4.70
3708 7769 1.339824 CCAGATCACAAAGCAGCCTCT 60.340 52.381 0.00 0.00 0.00 3.69
3737 7798 3.030291 ACAAACCCAGATCACAAAGCAA 58.970 40.909 0.00 0.00 0.00 3.91
3743 7804 3.763360 CCCAGATCACAAAGCAACCATAA 59.237 43.478 0.00 0.00 0.00 1.90
3775 7836 2.037136 CCAGCCTGACCAGAAAGCG 61.037 63.158 0.00 0.00 0.00 4.68
3777 7838 2.217038 AGCCTGACCAGAAAGCGGA 61.217 57.895 0.00 0.00 0.00 5.54
3854 7915 2.751436 GAGCCATTGCCAGCCGAA 60.751 61.111 0.00 0.00 38.69 4.30
3964 8026 0.579156 GCTTTCGCTCGATCCATGTC 59.421 55.000 0.00 0.00 0.00 3.06
3966 8028 0.824109 TTTCGCTCGATCCATGTCCT 59.176 50.000 0.00 0.00 0.00 3.85
4006 8069 4.774503 GCAGCCGAAGCCTGCTCT 62.775 66.667 6.16 0.00 41.25 4.09
4007 8070 2.895680 CAGCCGAAGCCTGCTCTA 59.104 61.111 0.00 0.00 41.25 2.43
4036 8099 2.317609 CCACGGCGACACCTTCAAG 61.318 63.158 16.62 0.00 35.61 3.02
4037 8100 2.030562 ACGGCGACACCTTCAAGG 59.969 61.111 16.62 0.22 42.49 3.61
4038 8101 3.423154 CGGCGACACCTTCAAGGC 61.423 66.667 2.20 0.00 39.63 4.35
4039 8102 2.281484 GGCGACACCTTCAAGGCA 60.281 61.111 2.20 0.00 39.63 4.75
4040 8103 1.675641 GGCGACACCTTCAAGGCAT 60.676 57.895 2.20 0.00 39.63 4.40
4041 8104 1.648467 GGCGACACCTTCAAGGCATC 61.648 60.000 2.20 0.00 39.63 3.91
4042 8105 0.674895 GCGACACCTTCAAGGCATCT 60.675 55.000 2.20 0.00 39.63 2.90
4043 8106 1.363744 CGACACCTTCAAGGCATCTC 58.636 55.000 2.20 0.00 39.63 2.75
4044 8107 1.743996 GACACCTTCAAGGCATCTCC 58.256 55.000 2.20 0.00 39.63 3.71
4083 8146 0.251386 TCTCGAGCAACTCTGGAGGT 60.251 55.000 7.81 0.00 44.72 3.85
4153 8387 0.473326 GCTGGAGGAGGCTGATTCAT 59.527 55.000 0.00 0.00 0.00 2.57
4163 8397 0.392998 GCTGATTCATGGTGGACGGT 60.393 55.000 0.00 0.00 0.00 4.83
4168 8402 4.424711 CATGGTGGACGGTGGGGG 62.425 72.222 0.00 0.00 0.00 5.40
4191 8425 4.129737 GCGTGGGCGTCTCAGCTA 62.130 66.667 0.00 0.00 40.81 3.32
4192 8426 2.103143 CGTGGGCGTCTCAGCTAG 59.897 66.667 0.00 0.00 37.29 3.42
4193 8427 2.701780 CGTGGGCGTCTCAGCTAGT 61.702 63.158 0.00 0.00 37.29 2.57
4299 8552 1.078143 GCCTCAAATCCAGTCCGCT 60.078 57.895 0.00 0.00 0.00 5.52
4487 8749 1.375140 CTTGGCTTCTCTGCTGCGA 60.375 57.895 0.00 0.00 0.00 5.10
4494 8756 3.574445 CTCTGCTGCGATGCTGGC 61.574 66.667 0.00 0.00 33.58 4.85
4511 8773 1.524849 GCGCCCTCCTGGAGAAATC 60.525 63.158 25.18 9.36 35.62 2.17
4543 8820 2.125552 TTGTCCGAGCCGATGCAG 60.126 61.111 0.00 0.00 41.13 4.41
4594 8871 1.410050 TTGCACCTCTGCTCTCACCA 61.410 55.000 0.00 0.00 44.57 4.17
4648 8925 2.896039 AGACCTTGCTCTACTCAACCT 58.104 47.619 0.00 0.00 0.00 3.50
4711 8988 2.952702 GCTCAGGTCTATGTCTCCAGGT 60.953 54.545 0.00 0.00 0.00 4.00
4747 9024 0.387929 GTATTCCAGATCGGGCGACA 59.612 55.000 7.07 0.00 34.36 4.35
4811 9088 6.019237 GCAGTTCATGTGTGATGTATCTGTAG 60.019 42.308 0.00 0.00 33.56 2.74
4821 9098 6.263392 TGTGATGTATCTGTAGGCTACTCTTC 59.737 42.308 24.07 15.31 0.00 2.87
4825 9102 5.651139 TGTATCTGTAGGCTACTCTTCGTTT 59.349 40.000 24.07 4.87 0.00 3.60
4826 9103 4.698583 TCTGTAGGCTACTCTTCGTTTC 57.301 45.455 24.07 0.00 0.00 2.78
4827 9104 4.333690 TCTGTAGGCTACTCTTCGTTTCT 58.666 43.478 24.07 0.00 0.00 2.52
4829 9106 2.923605 AGGCTACTCTTCGTTTCTCG 57.076 50.000 0.00 0.00 41.41 4.04
4830 9107 1.473278 AGGCTACTCTTCGTTTCTCGG 59.527 52.381 0.00 0.00 40.32 4.63
4831 9108 1.469423 GGCTACTCTTCGTTTCTCGGG 60.469 57.143 0.00 0.00 40.32 5.14
4832 9109 1.910688 CTACTCTTCGTTTCTCGGGC 58.089 55.000 0.00 0.00 40.32 6.13
4833 9110 0.169672 TACTCTTCGTTTCTCGGGCG 59.830 55.000 0.00 0.00 40.32 6.13
4848 9140 1.199097 CGGGCGAATAGTTTGCTTTGT 59.801 47.619 2.28 0.00 40.04 2.83
4912 9219 0.665835 TGTGTTCCGAACAATGCCAC 59.334 50.000 15.52 3.25 44.16 5.01
4934 9253 4.339814 ACCTCGAGATGATCTTACTGAACC 59.660 45.833 15.71 0.00 0.00 3.62
4957 9276 6.391227 CAATGGTCATTGGTTAATACTCCC 57.609 41.667 14.09 0.00 43.25 4.30
4958 9277 5.994416 ATGGTCATTGGTTAATACTCCCT 57.006 39.130 0.00 0.00 0.00 4.20
4959 9278 5.367945 TGGTCATTGGTTAATACTCCCTC 57.632 43.478 0.00 0.00 0.00 4.30
4960 9279 4.165372 TGGTCATTGGTTAATACTCCCTCC 59.835 45.833 0.00 0.00 0.00 4.30
4961 9280 4.377897 GTCATTGGTTAATACTCCCTCCG 58.622 47.826 0.00 0.00 0.00 4.63
4962 9281 4.035112 TCATTGGTTAATACTCCCTCCGT 58.965 43.478 0.00 0.00 0.00 4.69
4963 9282 4.472108 TCATTGGTTAATACTCCCTCCGTT 59.528 41.667 0.00 0.00 0.00 4.44
4964 9283 4.914177 TTGGTTAATACTCCCTCCGTTT 57.086 40.909 0.00 0.00 0.00 3.60
4965 9284 4.476628 TGGTTAATACTCCCTCCGTTTC 57.523 45.455 0.00 0.00 0.00 2.78
4966 9285 4.098894 TGGTTAATACTCCCTCCGTTTCT 58.901 43.478 0.00 0.00 0.00 2.52
4967 9286 4.533311 TGGTTAATACTCCCTCCGTTTCTT 59.467 41.667 0.00 0.00 0.00 2.52
4968 9287 5.013391 TGGTTAATACTCCCTCCGTTTCTTT 59.987 40.000 0.00 0.00 0.00 2.52
4969 9288 5.942236 GGTTAATACTCCCTCCGTTTCTTTT 59.058 40.000 0.00 0.00 0.00 2.27
4970 9289 6.432162 GGTTAATACTCCCTCCGTTTCTTTTT 59.568 38.462 0.00 0.00 0.00 1.94
4971 9290 7.607607 GGTTAATACTCCCTCCGTTTCTTTTTA 59.392 37.037 0.00 0.00 0.00 1.52
4972 9291 8.663025 GTTAATACTCCCTCCGTTTCTTTTTAG 58.337 37.037 0.00 0.00 0.00 1.85
4973 9292 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
4974 9293 4.639334 ACTCCCTCCGTTTCTTTTTAGTC 58.361 43.478 0.00 0.00 0.00 2.59
4975 9294 4.347292 ACTCCCTCCGTTTCTTTTTAGTCT 59.653 41.667 0.00 0.00 0.00 3.24
4976 9295 4.638304 TCCCTCCGTTTCTTTTTAGTCTG 58.362 43.478 0.00 0.00 0.00 3.51
4977 9296 3.188667 CCCTCCGTTTCTTTTTAGTCTGC 59.811 47.826 0.00 0.00 0.00 4.26
4978 9297 3.813166 CCTCCGTTTCTTTTTAGTCTGCA 59.187 43.478 0.00 0.00 0.00 4.41
4979 9298 4.455877 CCTCCGTTTCTTTTTAGTCTGCAT 59.544 41.667 0.00 0.00 0.00 3.96
4980 9299 5.642063 CCTCCGTTTCTTTTTAGTCTGCATA 59.358 40.000 0.00 0.00 0.00 3.14
4981 9300 6.316390 CCTCCGTTTCTTTTTAGTCTGCATAT 59.684 38.462 0.00 0.00 0.00 1.78
4982 9301 7.494625 CCTCCGTTTCTTTTTAGTCTGCATATA 59.505 37.037 0.00 0.00 0.00 0.86
4983 9302 8.780846 TCCGTTTCTTTTTAGTCTGCATATAA 57.219 30.769 0.00 0.00 0.00 0.98
4984 9303 8.879759 TCCGTTTCTTTTTAGTCTGCATATAAG 58.120 33.333 0.00 0.00 0.00 1.73
4985 9304 8.122952 CCGTTTCTTTTTAGTCTGCATATAAGG 58.877 37.037 0.00 0.00 0.00 2.69
4986 9305 8.665685 CGTTTCTTTTTAGTCTGCATATAAGGT 58.334 33.333 0.00 0.00 0.00 3.50
4990 9309 8.956426 TCTTTTTAGTCTGCATATAAGGTTTGG 58.044 33.333 0.00 0.00 0.00 3.28
4991 9310 8.644374 TTTTTAGTCTGCATATAAGGTTTGGT 57.356 30.769 0.00 0.00 0.00 3.67
4992 9311 7.859325 TTTAGTCTGCATATAAGGTTTGGTC 57.141 36.000 0.00 0.00 0.00 4.02
4993 9312 5.435686 AGTCTGCATATAAGGTTTGGTCA 57.564 39.130 0.00 0.00 0.00 4.02
4994 9313 5.815581 AGTCTGCATATAAGGTTTGGTCAA 58.184 37.500 0.00 0.00 0.00 3.18
4995 9314 6.245408 AGTCTGCATATAAGGTTTGGTCAAA 58.755 36.000 0.00 0.00 0.00 2.69
4996 9315 6.375455 AGTCTGCATATAAGGTTTGGTCAAAG 59.625 38.462 0.00 0.00 0.00 2.77
4997 9316 6.151144 GTCTGCATATAAGGTTTGGTCAAAGT 59.849 38.462 0.00 0.00 0.00 2.66
4998 9317 6.374333 TCTGCATATAAGGTTTGGTCAAAGTC 59.626 38.462 0.00 0.00 0.00 3.01
4999 9318 6.007076 TGCATATAAGGTTTGGTCAAAGTCA 58.993 36.000 0.00 0.00 0.00 3.41
5000 9319 6.491745 TGCATATAAGGTTTGGTCAAAGTCAA 59.508 34.615 0.00 0.00 0.00 3.18
5001 9320 7.029563 GCATATAAGGTTTGGTCAAAGTCAAG 58.970 38.462 0.00 0.00 0.00 3.02
5002 9321 3.801114 AAGGTTTGGTCAAAGTCAAGC 57.199 42.857 0.00 0.00 0.00 4.01
5003 9322 3.018423 AGGTTTGGTCAAAGTCAAGCT 57.982 42.857 0.00 0.00 0.00 3.74
5004 9323 3.365472 AGGTTTGGTCAAAGTCAAGCTT 58.635 40.909 0.00 0.00 39.52 3.74
5078 9397 8.694581 TGAAATCAATATTATCAGATGCACCA 57.305 30.769 0.00 0.00 0.00 4.17
5079 9398 9.304335 TGAAATCAATATTATCAGATGCACCAT 57.696 29.630 0.00 0.00 0.00 3.55
5080 9399 9.569167 GAAATCAATATTATCAGATGCACCATG 57.431 33.333 0.00 0.00 0.00 3.66
5081 9400 8.873186 AATCAATATTATCAGATGCACCATGA 57.127 30.769 0.00 0.00 0.00 3.07
5082 9401 8.873186 ATCAATATTATCAGATGCACCATGAA 57.127 30.769 0.00 0.00 0.00 2.57
5083 9402 8.694581 TCAATATTATCAGATGCACCATGAAA 57.305 30.769 0.00 0.00 0.00 2.69
5084 9403 8.570488 TCAATATTATCAGATGCACCATGAAAC 58.430 33.333 0.00 0.00 0.00 2.78
5085 9404 4.880886 TTATCAGATGCACCATGAAACG 57.119 40.909 0.00 0.00 0.00 3.60
5086 9405 2.183478 TCAGATGCACCATGAAACGT 57.817 45.000 0.00 0.00 0.00 3.99
5087 9406 3.326836 TCAGATGCACCATGAAACGTA 57.673 42.857 0.00 0.00 0.00 3.57
5088 9407 3.872696 TCAGATGCACCATGAAACGTAT 58.127 40.909 0.00 0.00 0.00 3.06
5089 9408 4.260985 TCAGATGCACCATGAAACGTATT 58.739 39.130 0.00 0.00 0.00 1.89
5090 9409 4.699735 TCAGATGCACCATGAAACGTATTT 59.300 37.500 0.00 0.00 0.00 1.40
5091 9410 5.182950 TCAGATGCACCATGAAACGTATTTT 59.817 36.000 0.00 0.00 0.00 1.82
5092 9411 5.512788 CAGATGCACCATGAAACGTATTTTC 59.487 40.000 0.00 0.00 43.63 2.29
5173 9492 6.679327 ACTTTGTCTAGTTTGACTTTGACC 57.321 37.500 9.66 0.00 37.79 4.02
5174 9493 6.177610 ACTTTGTCTAGTTTGACTTTGACCA 58.822 36.000 9.66 0.52 37.79 4.02
5175 9494 6.657541 ACTTTGTCTAGTTTGACTTTGACCAA 59.342 34.615 9.66 6.15 37.79 3.67
5176 9495 7.175990 ACTTTGTCTAGTTTGACTTTGACCAAA 59.824 33.333 9.66 0.00 37.79 3.28
5177 9496 7.639113 TTGTCTAGTTTGACTTTGACCAAAT 57.361 32.000 0.00 0.00 37.79 2.32
5178 9497 7.259290 TGTCTAGTTTGACTTTGACCAAATC 57.741 36.000 0.00 0.00 37.79 2.17
5179 9498 7.054124 TGTCTAGTTTGACTTTGACCAAATCT 58.946 34.615 0.00 0.00 37.79 2.40
5180 9499 7.556275 TGTCTAGTTTGACTTTGACCAAATCTT 59.444 33.333 0.00 0.00 37.79 2.40
5181 9500 9.052759 GTCTAGTTTGACTTTGACCAAATCTTA 57.947 33.333 0.00 0.00 35.14 2.10
5182 9501 9.793259 TCTAGTTTGACTTTGACCAAATCTTAT 57.207 29.630 0.00 0.00 35.14 1.73
5186 9505 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
5187 9506 7.015226 TGACTTTGACCAAATCTTATATGCG 57.985 36.000 0.00 0.00 0.00 4.73
5188 9507 6.038161 TGACTTTGACCAAATCTTATATGCGG 59.962 38.462 0.00 0.00 0.00 5.69
5189 9508 6.119536 ACTTTGACCAAATCTTATATGCGGA 58.880 36.000 0.00 0.00 0.00 5.54
5190 9509 6.260936 ACTTTGACCAAATCTTATATGCGGAG 59.739 38.462 0.00 0.00 0.00 4.63
5191 9510 5.290493 TGACCAAATCTTATATGCGGAGT 57.710 39.130 0.00 0.00 0.00 3.85
5192 9511 6.413783 TGACCAAATCTTATATGCGGAGTA 57.586 37.500 0.00 0.00 0.00 2.59
5193 9512 6.822442 TGACCAAATCTTATATGCGGAGTAA 58.178 36.000 0.00 0.00 0.00 2.24
5194 9513 7.276658 TGACCAAATCTTATATGCGGAGTAAA 58.723 34.615 0.00 0.00 0.00 2.01
5195 9514 7.771361 TGACCAAATCTTATATGCGGAGTAAAA 59.229 33.333 0.00 0.00 0.00 1.52
5196 9515 8.514330 ACCAAATCTTATATGCGGAGTAAAAA 57.486 30.769 0.00 0.00 0.00 1.94
5197 9516 8.621286 ACCAAATCTTATATGCGGAGTAAAAAG 58.379 33.333 0.00 0.00 0.00 2.27
5198 9517 8.836413 CCAAATCTTATATGCGGAGTAAAAAGA 58.164 33.333 0.00 0.00 0.00 2.52
5202 9521 7.902032 TCTTATATGCGGAGTAAAAAGAAACG 58.098 34.615 0.00 0.00 0.00 3.60
5203 9522 3.824414 ATGCGGAGTAAAAAGAAACGG 57.176 42.857 0.00 0.00 0.00 4.44
5204 9523 1.874872 TGCGGAGTAAAAAGAAACGGG 59.125 47.619 0.00 0.00 0.00 5.28
5205 9524 1.198408 GCGGAGTAAAAAGAAACGGGG 59.802 52.381 0.00 0.00 0.00 5.73
5206 9525 1.808343 CGGAGTAAAAAGAAACGGGGG 59.192 52.381 0.00 0.00 0.00 5.40
5228 9547 4.191544 GGAGTATGCATAGCACTTGTTGA 58.808 43.478 6.67 0.00 43.04 3.18
5248 9567 6.766944 TGTTGAACTTCGGTTGTTTAGGAATA 59.233 34.615 0.00 0.00 38.41 1.75
5333 9652 3.259633 AAGCAGTTCCGCCTCCCAG 62.260 63.158 0.00 0.00 0.00 4.45
5407 9726 8.970859 TGGACAACAAAAATATGTTTCCATTT 57.029 26.923 14.41 0.00 41.44 2.32
5440 9759 1.815003 GTTCAGCCAAAGGATCACTGG 59.185 52.381 0.00 0.00 0.00 4.00
5562 9881 7.766283 TGCATGACGAATATGTTTCCATTTTA 58.234 30.769 0.00 0.00 32.29 1.52
5603 9922 5.762218 GCCTGTGTAGATGCAGAATAAGAAT 59.238 40.000 0.00 0.00 34.87 2.40
5607 9926 7.512130 TGTGTAGATGCAGAATAAGAATGGAT 58.488 34.615 0.00 0.00 0.00 3.41
5671 9996 4.593956 CCCTCTTTTAAGCCTTCTGATGT 58.406 43.478 0.00 0.00 0.00 3.06
5672 9997 4.397417 CCCTCTTTTAAGCCTTCTGATGTG 59.603 45.833 0.00 0.00 0.00 3.21
5673 9998 5.006386 CCTCTTTTAAGCCTTCTGATGTGT 58.994 41.667 0.00 0.00 0.00 3.72
5674 9999 5.106396 CCTCTTTTAAGCCTTCTGATGTGTG 60.106 44.000 0.00 0.00 0.00 3.82
5676 10001 4.365514 TTTAAGCCTTCTGATGTGTGGA 57.634 40.909 0.00 0.00 0.00 4.02
5677 10002 4.574674 TTAAGCCTTCTGATGTGTGGAT 57.425 40.909 0.00 0.00 0.00 3.41
5679 10004 1.632409 AGCCTTCTGATGTGTGGATGT 59.368 47.619 0.00 0.00 0.00 3.06
5710 10046 6.059484 AGAGCAGAGAGTTCCTACATAGTAC 58.941 44.000 0.00 0.00 0.00 2.73
5711 10047 6.008696 AGCAGAGAGTTCCTACATAGTACT 57.991 41.667 0.00 0.00 0.00 2.73
5712 10048 7.071447 AGAGCAGAGAGTTCCTACATAGTACTA 59.929 40.741 4.77 4.77 0.00 1.82
5791 10127 8.512138 ACTGCCTTGAAATGTTACTACAATTAC 58.488 33.333 0.00 0.00 37.91 1.89
5932 10279 1.276415 GCTCTTGAGATCGACACAGC 58.724 55.000 1.30 8.92 0.00 4.40
6045 12826 1.294780 CTGCAGTCCAGTCCAGTCC 59.705 63.158 5.25 0.00 36.79 3.85
6052 12833 2.348998 CAGTCCAGTCCAGGCCAC 59.651 66.667 5.01 0.00 0.00 5.01
6135 12916 0.184933 TGTTGGGCAGCAAAGGTAGT 59.815 50.000 0.00 0.00 0.00 2.73
6196 12977 3.106407 GCACGTGAGCGGTGAGAC 61.106 66.667 22.23 0.00 43.45 3.36
6249 13030 4.214310 TGGAACAGCAAAATCTGAGGAAA 58.786 39.130 0.00 0.00 37.51 3.13
6260 13369 5.367945 AATCTGAGGAAATTAAGGGCGTA 57.632 39.130 0.00 0.00 0.00 4.42
6354 13463 3.679980 ACATGCACGATGTTTGACTAGAC 59.320 43.478 0.00 0.00 43.20 2.59
6387 13496 6.403878 GGTCAGACAAGCTAATGTTTACCTA 58.596 40.000 2.17 0.00 32.57 3.08
6390 13499 8.248945 GTCAGACAAGCTAATGTTTACCTAGTA 58.751 37.037 0.00 0.00 32.57 1.82
6395 13504 6.728089 AGCTAATGTTTACCTAGTACTCCC 57.272 41.667 0.00 0.00 0.00 4.30
6396 13505 6.200114 AGCTAATGTTTACCTAGTACTCCCA 58.800 40.000 0.00 0.00 0.00 4.37
6397 13506 6.324254 AGCTAATGTTTACCTAGTACTCCCAG 59.676 42.308 0.00 0.00 0.00 4.45
6398 13507 6.097981 GCTAATGTTTACCTAGTACTCCCAGT 59.902 42.308 0.00 0.00 0.00 4.00
6399 13508 6.541934 AATGTTTACCTAGTACTCCCAGTC 57.458 41.667 0.00 0.00 0.00 3.51
6400 13509 4.347607 TGTTTACCTAGTACTCCCAGTCC 58.652 47.826 0.00 0.00 0.00 3.85
6401 13510 3.677156 TTACCTAGTACTCCCAGTCCC 57.323 52.381 0.00 0.00 0.00 4.46
6415 13524 1.207329 CAGTCCCAGGTAGGTTGCTAC 59.793 57.143 0.00 0.00 34.66 3.58
6439 13548 4.312443 GCACTTACACTTGCCACTTAGTA 58.688 43.478 0.00 0.00 32.21 1.82
6440 13549 4.389077 GCACTTACACTTGCCACTTAGTAG 59.611 45.833 0.00 0.00 32.21 2.57
6525 13716 4.419502 CATCACCATGCACCCACA 57.580 55.556 0.00 0.00 0.00 4.17
6559 13750 1.202268 CGACACCTCGATCACCTTACC 60.202 57.143 0.00 0.00 43.06 2.85
6564 13755 1.469251 CCTCGATCACCTTACCACGTG 60.469 57.143 9.08 9.08 0.00 4.49
6565 13756 1.471287 CTCGATCACCTTACCACGTGA 59.529 52.381 19.30 0.00 42.85 4.35
6566 13757 1.471287 TCGATCACCTTACCACGTGAG 59.529 52.381 19.30 9.89 42.01 3.51
6568 13759 2.352421 CGATCACCTTACCACGTGAGTT 60.352 50.000 19.30 3.11 46.40 3.01
6569 13760 3.660865 GATCACCTTACCACGTGAGTTT 58.339 45.455 19.30 0.33 46.40 2.66
6582 13773 1.867233 GTGAGTTTTGAGCTCGCTTCA 59.133 47.619 9.64 5.75 39.58 3.02
6583 13774 2.096516 GTGAGTTTTGAGCTCGCTTCAG 60.097 50.000 9.64 0.00 39.58 3.02
6589 13780 2.238942 TGAGCTCGCTTCAGAAACAA 57.761 45.000 9.64 0.00 0.00 2.83
6599 13790 3.321968 GCTTCAGAAACAACAGGGGAAAT 59.678 43.478 0.00 0.00 0.00 2.17
6627 15467 3.096541 TGCTACGTACGAGCACAAC 57.903 52.632 27.18 10.68 44.89 3.32
6638 15478 2.213499 CGAGCACAACAGTTTTCCTCT 58.787 47.619 0.00 0.00 0.00 3.69
6648 15488 3.243636 ACAGTTTTCCTCTTGCTGCAATG 60.244 43.478 16.38 10.10 0.00 2.82
6649 15489 2.064014 GTTTTCCTCTTGCTGCAATGC 58.936 47.619 16.38 0.00 0.00 3.56
6650 15490 1.330234 TTTCCTCTTGCTGCAATGCA 58.670 45.000 16.38 7.99 41.65 3.96
6660 15500 4.044336 TGCTGCAATGCAATTATACACC 57.956 40.909 9.92 0.00 40.29 4.16
6661 15501 3.446516 TGCTGCAATGCAATTATACACCA 59.553 39.130 9.92 0.00 40.29 4.17
6662 15502 4.081807 TGCTGCAATGCAATTATACACCAA 60.082 37.500 9.92 0.00 40.29 3.67
6688 15552 1.449423 TCCATCGGCAACCATCACG 60.449 57.895 0.00 0.00 0.00 4.35
6711 15575 1.995991 CGGCTCGATTAACCACACG 59.004 57.895 0.00 0.00 0.00 4.49
6714 15578 1.702491 GCTCGATTAACCACACGCCC 61.702 60.000 0.00 0.00 0.00 6.13
6715 15579 1.078988 TCGATTAACCACACGCCCC 60.079 57.895 0.00 0.00 0.00 5.80
6717 15581 2.045731 ATTAACCACACGCCCCCG 60.046 61.111 0.00 0.00 41.14 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.614792 ATGACTCAACTTTCTACAAACTTTAGT 57.385 29.630 0.00 0.00 0.00 2.24
19 20 9.832445 AGATGACTCAACTTTCTACAAACTTTA 57.168 29.630 0.00 0.00 0.00 1.85
20 21 8.738645 AGATGACTCAACTTTCTACAAACTTT 57.261 30.769 0.00 0.00 0.00 2.66
26 27 9.219603 CCAAAATAGATGACTCAACTTTCTACA 57.780 33.333 0.00 0.00 0.00 2.74
27 28 9.436957 TCCAAAATAGATGACTCAACTTTCTAC 57.563 33.333 0.00 0.00 0.00 2.59
29 30 8.787852 GTTCCAAAATAGATGACTCAACTTTCT 58.212 33.333 0.00 0.00 0.00 2.52
30 31 7.746475 CGTTCCAAAATAGATGACTCAACTTTC 59.254 37.037 0.00 0.00 0.00 2.62
31 32 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
32 33 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
33 34 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
34 35 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
35 36 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
36 37 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
37 38 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
38 39 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
39 40 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
40 41 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
41 42 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
42 43 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
43 44 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
44 45 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
45 46 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
46 47 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
47 48 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
48 49 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
49 50 2.019807 AACTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
50 51 1.621814 CAAACTACTCCCTCCGTTCCA 59.378 52.381 0.00 0.00 0.00 3.53
51 52 1.066358 CCAAACTACTCCCTCCGTTCC 60.066 57.143 0.00 0.00 0.00 3.62
52 53 1.897802 TCCAAACTACTCCCTCCGTTC 59.102 52.381 0.00 0.00 0.00 3.95
53 54 2.019807 TCCAAACTACTCCCTCCGTT 57.980 50.000 0.00 0.00 0.00 4.44
54 55 2.019807 TTCCAAACTACTCCCTCCGT 57.980 50.000 0.00 0.00 0.00 4.69
55 56 3.412237 TTTTCCAAACTACTCCCTCCG 57.588 47.619 0.00 0.00 0.00 4.63
56 57 4.466827 TGTTTTTCCAAACTACTCCCTCC 58.533 43.478 0.00 0.00 42.61 4.30
57 58 6.264518 TGAATGTTTTTCCAAACTACTCCCTC 59.735 38.462 0.00 0.00 42.61 4.30
58 59 6.133356 TGAATGTTTTTCCAAACTACTCCCT 58.867 36.000 0.00 0.00 42.61 4.20
59 60 6.399639 TGAATGTTTTTCCAAACTACTCCC 57.600 37.500 0.00 0.00 42.61 4.30
60 61 6.868339 CCATGAATGTTTTTCCAAACTACTCC 59.132 38.462 0.00 0.00 42.61 3.85
61 62 7.433680 ACCATGAATGTTTTTCCAAACTACTC 58.566 34.615 0.00 0.00 42.61 2.59
62 63 7.360113 ACCATGAATGTTTTTCCAAACTACT 57.640 32.000 0.00 0.00 42.61 2.57
63 64 8.432110 AAACCATGAATGTTTTTCCAAACTAC 57.568 30.769 0.00 0.00 42.61 2.73
64 65 9.757227 CTAAACCATGAATGTTTTTCCAAACTA 57.243 29.630 0.00 0.00 42.61 2.24
65 66 8.482128 TCTAAACCATGAATGTTTTTCCAAACT 58.518 29.630 0.00 0.00 42.61 2.66
66 67 8.655651 TCTAAACCATGAATGTTTTTCCAAAC 57.344 30.769 0.00 0.00 42.49 2.93
67 68 9.672673 TTTCTAAACCATGAATGTTTTTCCAAA 57.327 25.926 0.00 0.00 0.00 3.28
68 69 9.672673 TTTTCTAAACCATGAATGTTTTTCCAA 57.327 25.926 0.00 0.00 0.00 3.53
69 70 9.844257 ATTTTCTAAACCATGAATGTTTTTCCA 57.156 25.926 0.00 0.00 0.00 3.53
75 76 9.829507 TGAACAATTTTCTAAACCATGAATGTT 57.170 25.926 0.00 0.00 30.48 2.71
76 77 9.260002 GTGAACAATTTTCTAAACCATGAATGT 57.740 29.630 0.00 0.00 0.00 2.71
77 78 9.480053 AGTGAACAATTTTCTAAACCATGAATG 57.520 29.630 0.00 0.00 0.00 2.67
79 80 9.883142 AAAGTGAACAATTTTCTAAACCATGAA 57.117 25.926 0.00 0.00 0.00 2.57
80 81 9.883142 AAAAGTGAACAATTTTCTAAACCATGA 57.117 25.926 7.07 0.00 33.99 3.07
83 84 8.865001 CGAAAAAGTGAACAATTTTCTAAACCA 58.135 29.630 12.09 0.00 37.58 3.67
84 85 9.078753 TCGAAAAAGTGAACAATTTTCTAAACC 57.921 29.630 12.09 0.85 37.58 3.27
707 708 4.212004 CACAATAGTGGGATATTCACTGCG 59.788 45.833 17.58 10.76 44.24 5.18
727 728 9.743057 AACGTGATTGAAATTTAAAATCTCACA 57.257 25.926 19.32 5.13 32.63 3.58
744 746 3.989817 TCTGACAGATGACAACGTGATTG 59.010 43.478 0.00 0.00 44.60 2.67
746 748 3.942130 TCTGACAGATGACAACGTGAT 57.058 42.857 0.00 0.00 0.00 3.06
765 767 3.574826 AGTCTAGACCTTATGGCCGATTC 59.425 47.826 19.38 0.00 36.63 2.52
768 770 2.175069 AGAGTCTAGACCTTATGGCCGA 59.825 50.000 19.38 0.00 36.63 5.54
775 777 5.455040 GCTAGCCACTAGAGTCTAGACCTTA 60.455 48.000 29.87 16.15 36.26 2.69
777 779 3.181448 GCTAGCCACTAGAGTCTAGACCT 60.181 52.174 29.87 22.24 36.26 3.85
778 780 3.143728 GCTAGCCACTAGAGTCTAGACC 58.856 54.545 29.87 17.55 36.26 3.85
779 781 3.811083 TGCTAGCCACTAGAGTCTAGAC 58.189 50.000 29.87 15.41 36.26 2.59
780 782 4.103311 TGATGCTAGCCACTAGAGTCTAGA 59.897 45.833 29.87 9.37 36.26 2.43
781 783 4.215399 GTGATGCTAGCCACTAGAGTCTAG 59.785 50.000 23.12 23.12 36.26 2.43
782 784 4.138290 GTGATGCTAGCCACTAGAGTCTA 58.862 47.826 13.29 0.00 36.26 2.59
783 785 2.955660 GTGATGCTAGCCACTAGAGTCT 59.044 50.000 13.29 0.00 36.26 3.24
784 786 2.035321 GGTGATGCTAGCCACTAGAGTC 59.965 54.545 19.41 3.48 36.26 3.36
785 787 2.035632 GGTGATGCTAGCCACTAGAGT 58.964 52.381 19.41 0.00 36.26 3.24
786 788 1.342819 GGGTGATGCTAGCCACTAGAG 59.657 57.143 19.41 0.00 36.26 2.43
787 789 1.414158 GGGTGATGCTAGCCACTAGA 58.586 55.000 19.41 0.00 36.26 2.43
788 790 0.032678 CGGGTGATGCTAGCCACTAG 59.967 60.000 19.41 12.06 38.11 2.57
789 791 0.686441 ACGGGTGATGCTAGCCACTA 60.686 55.000 19.41 0.00 38.11 2.74
790 792 0.686441 TACGGGTGATGCTAGCCACT 60.686 55.000 19.41 6.78 38.11 4.00
791 793 0.249489 CTACGGGTGATGCTAGCCAC 60.249 60.000 13.29 13.62 38.11 5.01
792 794 1.399744 CCTACGGGTGATGCTAGCCA 61.400 60.000 13.29 0.06 38.11 4.75
793 795 1.367840 CCTACGGGTGATGCTAGCC 59.632 63.158 13.29 0.00 34.90 3.93
794 796 0.464452 AACCTACGGGTGATGCTAGC 59.536 55.000 8.10 8.10 46.67 3.42
795 797 2.981859 AAACCTACGGGTGATGCTAG 57.018 50.000 0.00 0.00 46.67 3.42
796 798 3.262405 AGAAAAACCTACGGGTGATGCTA 59.738 43.478 0.00 0.00 46.67 3.49
797 799 2.039879 AGAAAAACCTACGGGTGATGCT 59.960 45.455 0.00 0.00 46.67 3.79
798 800 2.433436 AGAAAAACCTACGGGTGATGC 58.567 47.619 0.00 0.00 46.67 3.91
799 801 5.447624 AAAAGAAAAACCTACGGGTGATG 57.552 39.130 0.00 0.00 46.67 3.07
800 802 6.429078 GTCTAAAAGAAAAACCTACGGGTGAT 59.571 38.462 0.00 0.00 46.67 3.06
801 803 5.759763 GTCTAAAAGAAAAACCTACGGGTGA 59.240 40.000 0.00 0.00 46.67 4.02
802 804 5.528320 TGTCTAAAAGAAAAACCTACGGGTG 59.472 40.000 0.00 0.00 46.67 4.61
803 805 7.122501 TTTTGTCTAAAAGAAAAACCTACGGGT 59.877 33.333 0.00 0.00 38.05 5.28
804 806 6.622833 TTGTCTAAAAGAAAAACCTACGGG 57.377 37.500 0.00 0.00 38.88 5.28
805 807 8.186163 AGTTTTGTCTAAAAGAAAAACCTACGG 58.814 33.333 15.68 0.00 36.73 4.02
839 841 4.505922 CGGAGAGCTCTGTGATCAATAAAC 59.494 45.833 23.91 0.85 32.67 2.01
870 872 4.066139 GCCAACATGGGGGAGGCT 62.066 66.667 8.93 0.00 42.01 4.58
877 879 0.530288 CCCTTAAACGCCAACATGGG 59.470 55.000 0.00 0.00 38.19 4.00
878 880 0.530288 CCCCTTAAACGCCAACATGG 59.470 55.000 0.00 0.00 41.55 3.66
879 881 0.108851 GCCCCTTAAACGCCAACATG 60.109 55.000 0.00 0.00 0.00 3.21
880 882 0.251608 AGCCCCTTAAACGCCAACAT 60.252 50.000 0.00 0.00 0.00 2.71
881 883 1.151908 AGCCCCTTAAACGCCAACA 59.848 52.632 0.00 0.00 0.00 3.33
882 884 1.584495 CAGCCCCTTAAACGCCAAC 59.416 57.895 0.00 0.00 0.00 3.77
883 885 2.272447 GCAGCCCCTTAAACGCCAA 61.272 57.895 0.00 0.00 0.00 4.52
884 886 2.675075 GCAGCCCCTTAAACGCCA 60.675 61.111 0.00 0.00 0.00 5.69
885 887 2.052104 ATGCAGCCCCTTAAACGCC 61.052 57.895 0.00 0.00 0.00 5.68
886 888 1.139520 CATGCAGCCCCTTAAACGC 59.860 57.895 0.00 0.00 0.00 4.84
887 889 0.887933 AACATGCAGCCCCTTAAACG 59.112 50.000 0.00 0.00 0.00 3.60
888 890 4.736126 ATTAACATGCAGCCCCTTAAAC 57.264 40.909 0.00 0.00 0.00 2.01
889 891 4.081198 CCAATTAACATGCAGCCCCTTAAA 60.081 41.667 0.00 0.00 0.00 1.52
890 892 3.450457 CCAATTAACATGCAGCCCCTTAA 59.550 43.478 0.00 0.00 0.00 1.85
891 893 3.030291 CCAATTAACATGCAGCCCCTTA 58.970 45.455 0.00 0.00 0.00 2.69
892 894 1.832998 CCAATTAACATGCAGCCCCTT 59.167 47.619 0.00 0.00 0.00 3.95
893 895 1.488390 CCAATTAACATGCAGCCCCT 58.512 50.000 0.00 0.00 0.00 4.79
894 896 0.179076 GCCAATTAACATGCAGCCCC 60.179 55.000 0.00 0.00 0.00 5.80
895 897 0.826062 AGCCAATTAACATGCAGCCC 59.174 50.000 0.00 0.00 0.00 5.19
896 898 1.472026 CCAGCCAATTAACATGCAGCC 60.472 52.381 0.00 0.00 0.00 4.85
897 899 1.930567 CCAGCCAATTAACATGCAGC 58.069 50.000 0.00 0.00 0.00 5.25
898 900 1.799917 CGCCAGCCAATTAACATGCAG 60.800 52.381 0.00 0.00 0.00 4.41
899 901 0.173029 CGCCAGCCAATTAACATGCA 59.827 50.000 0.00 0.00 0.00 3.96
900 902 0.528249 CCGCCAGCCAATTAACATGC 60.528 55.000 0.00 0.00 0.00 4.06
901 903 1.102154 TCCGCCAGCCAATTAACATG 58.898 50.000 0.00 0.00 0.00 3.21
902 904 2.071778 ATCCGCCAGCCAATTAACAT 57.928 45.000 0.00 0.00 0.00 2.71
903 905 2.719531 TATCCGCCAGCCAATTAACA 57.280 45.000 0.00 0.00 0.00 2.41
904 906 3.305335 CCATTATCCGCCAGCCAATTAAC 60.305 47.826 0.00 0.00 0.00 2.01
905 907 2.890311 CCATTATCCGCCAGCCAATTAA 59.110 45.455 0.00 0.00 0.00 1.40
906 908 2.513753 CCATTATCCGCCAGCCAATTA 58.486 47.619 0.00 0.00 0.00 1.40
907 909 1.331214 CCATTATCCGCCAGCCAATT 58.669 50.000 0.00 0.00 0.00 2.32
908 910 1.181098 GCCATTATCCGCCAGCCAAT 61.181 55.000 0.00 0.00 0.00 3.16
909 911 1.827789 GCCATTATCCGCCAGCCAA 60.828 57.895 0.00 0.00 0.00 4.52
910 912 2.203337 GCCATTATCCGCCAGCCA 60.203 61.111 0.00 0.00 0.00 4.75
911 913 2.985847 GGCCATTATCCGCCAGCC 60.986 66.667 0.00 0.00 45.01 4.85
1375 4978 0.613777 AACCTAGAAGGCGAACCCTG 59.386 55.000 0.00 0.00 45.62 4.45
1386 4989 4.379813 CGACTACCACGCTTAAACCTAGAA 60.380 45.833 0.00 0.00 0.00 2.10
1400 5003 3.861689 CCCGATTCTAAAACGACTACCAC 59.138 47.826 0.00 0.00 0.00 4.16
1431 5034 3.010584 ACAGCATCACCCCAACTTCTATT 59.989 43.478 0.00 0.00 0.00 1.73
1432 5035 2.578021 ACAGCATCACCCCAACTTCTAT 59.422 45.455 0.00 0.00 0.00 1.98
1449 5052 5.346181 AGATTAGACAGTAGGGAAACAGC 57.654 43.478 0.00 0.00 0.00 4.40
1456 5059 5.452077 GCTACACCAAGATTAGACAGTAGGG 60.452 48.000 0.00 0.00 0.00 3.53
1559 5162 4.843220 ATCAGCTTTATAACAGCATGGC 57.157 40.909 16.68 0.00 43.62 4.40
1713 5316 8.713971 AGATTTGGAAATTTAACCCTGAACTTT 58.286 29.630 0.00 0.00 0.00 2.66
1821 5457 3.055167 ACTTGAAAGGGCAAAAAGCTTGT 60.055 39.130 0.00 0.00 44.79 3.16
1901 5540 9.995003 TTGTCATTTCCTAAAGCATTAATTTGT 57.005 25.926 0.00 0.00 0.00 2.83
2076 5787 3.510753 TCGGCACAGTACCAGTTGTTATA 59.489 43.478 0.00 0.00 0.00 0.98
2077 5788 2.300723 TCGGCACAGTACCAGTTGTTAT 59.699 45.455 0.00 0.00 0.00 1.89
2078 5789 1.687660 TCGGCACAGTACCAGTTGTTA 59.312 47.619 0.00 0.00 0.00 2.41
2154 5865 4.100373 CCCTCCAAGCCTTATCTAGCTAT 58.900 47.826 0.00 0.00 38.74 2.97
2155 5866 3.511477 CCCTCCAAGCCTTATCTAGCTA 58.489 50.000 0.00 0.00 38.74 3.32
2177 5888 0.179018 AGACCAGGGACAGCACAAAC 60.179 55.000 0.00 0.00 0.00 2.93
2353 6363 6.997239 AATCGTTAAAACTGAAGGGGATAC 57.003 37.500 0.00 0.00 0.00 2.24
2413 6426 8.579850 TTTTCCTACACTGATTAATTGCTCAT 57.420 30.769 0.00 0.00 0.00 2.90
2522 6553 7.110155 TCAGGACCACAGATTAAAATAGGTTC 58.890 38.462 0.00 0.00 0.00 3.62
2582 6619 8.020819 TGCAGAGTGTAAATGTAAATTTACTGC 58.979 33.333 24.81 22.52 43.65 4.40
2591 6628 6.618287 GCCATATGCAGAGTGTAAATGTAA 57.382 37.500 0.00 0.00 40.77 2.41
2702 6739 5.821516 TCCTACTGTTTTTCGCTCAAAAA 57.178 34.783 0.34 0.34 40.93 1.94
2703 6740 5.821516 TTCCTACTGTTTTTCGCTCAAAA 57.178 34.783 0.00 0.00 31.73 2.44
2707 6744 3.365064 GCCTTTCCTACTGTTTTTCGCTC 60.365 47.826 0.00 0.00 0.00 5.03
2736 6773 7.812669 CCCCCTTTATAAAATATGAAATCGCAC 59.187 37.037 0.00 0.00 0.00 5.34
2765 6802 1.979809 TCCCATCCCACAGGTACATT 58.020 50.000 0.00 0.00 0.00 2.71
2768 6805 2.823747 GTTTTTCCCATCCCACAGGTAC 59.176 50.000 0.00 0.00 0.00 3.34
3245 7290 7.255590 CCACTATGTCTGGTTTTTGAACTGATT 60.256 37.037 0.00 0.00 0.00 2.57
3269 7314 5.005628 AGTTTTCCTTATAAACTGGGCCA 57.994 39.130 5.85 5.85 42.54 5.36
3316 7361 1.583967 CGTGTGATCGACGAGGCTC 60.584 63.158 10.73 3.87 39.21 4.70
3354 7399 1.327303 GGATTTGTGGGTGTGCTTGA 58.673 50.000 0.00 0.00 0.00 3.02
3366 7411 1.612726 GGAGCAGCACTCTGGATTTGT 60.613 52.381 6.71 0.00 45.48 2.83
3374 7419 2.479412 GAACGTCGGAGCAGCACTCT 62.479 60.000 6.71 0.00 45.48 3.24
3378 7423 4.373116 GGGAACGTCGGAGCAGCA 62.373 66.667 0.00 0.00 0.00 4.41
3424 7469 1.067582 GCTATAAGGCGTCCGTGCT 59.932 57.895 0.00 0.00 34.52 4.40
3447 7492 3.820467 TGCAGGTGGTTGTCTCATTTAAG 59.180 43.478 0.00 0.00 0.00 1.85
3448 7493 3.820467 CTGCAGGTGGTTGTCTCATTTAA 59.180 43.478 5.57 0.00 0.00 1.52
3451 7496 1.421268 TCTGCAGGTGGTTGTCTCATT 59.579 47.619 15.13 0.00 0.00 2.57
3463 7508 2.029649 GCATTGTTTGTCATCTGCAGGT 60.030 45.455 15.13 2.68 36.07 4.00
3473 7518 1.565305 TGTTTGGCGCATTGTTTGTC 58.435 45.000 10.83 0.00 0.00 3.18
3480 7525 0.247185 CCTTGGATGTTTGGCGCATT 59.753 50.000 10.83 0.00 0.00 3.56
3501 7546 2.986979 TGGTACGTCGAGGCAGCA 60.987 61.111 6.15 6.15 0.00 4.41
3534 7579 2.102357 CCCGGTCGACACGATCTG 59.898 66.667 22.53 9.61 38.42 2.90
3535 7580 3.823330 GCCCGGTCGACACGATCT 61.823 66.667 22.53 0.00 38.42 2.75
3559 7604 2.202810 GCTGCGAGGGTAGTGAGC 60.203 66.667 0.00 0.00 0.00 4.26
3563 7608 1.038130 CCTAGTGCTGCGAGGGTAGT 61.038 60.000 7.07 0.00 36.48 2.73
3569 7614 2.580867 GCGACCTAGTGCTGCGAG 60.581 66.667 0.00 0.00 0.00 5.03
3571 7616 4.435436 TGGCGACCTAGTGCTGCG 62.435 66.667 0.00 0.00 0.00 5.18
3586 7631 1.392589 GGTCTGCATTACATGGGTGG 58.607 55.000 0.00 0.00 0.00 4.61
3667 7728 4.783621 TGTGGATGCCGGAGCTGC 62.784 66.667 5.05 0.00 40.80 5.25
3669 7730 1.675641 GTTTGTGGATGCCGGAGCT 60.676 57.895 5.05 0.00 40.80 4.09
3673 7734 2.282816 TGGGTTTGTGGATGCCGG 60.283 61.111 0.00 0.00 0.00 6.13
3674 7735 0.680921 ATCTGGGTTTGTGGATGCCG 60.681 55.000 0.00 0.00 0.00 5.69
3675 7736 1.106285 GATCTGGGTTTGTGGATGCC 58.894 55.000 0.00 0.00 0.00 4.40
3676 7737 1.474077 GTGATCTGGGTTTGTGGATGC 59.526 52.381 0.00 0.00 0.00 3.91
3677 7738 2.794103 TGTGATCTGGGTTTGTGGATG 58.206 47.619 0.00 0.00 0.00 3.51
3678 7739 3.524095 TTGTGATCTGGGTTTGTGGAT 57.476 42.857 0.00 0.00 0.00 3.41
3679 7740 3.221771 CTTTGTGATCTGGGTTTGTGGA 58.778 45.455 0.00 0.00 0.00 4.02
3683 7744 2.608752 GCTGCTTTGTGATCTGGGTTTG 60.609 50.000 0.00 0.00 0.00 2.93
3706 7767 0.251297 CTGGGTTTGTGGATGCCAGA 60.251 55.000 0.00 0.00 32.34 3.86
3707 7768 0.251297 TCTGGGTTTGTGGATGCCAG 60.251 55.000 0.00 0.00 32.34 4.85
3708 7769 0.409092 ATCTGGGTTTGTGGATGCCA 59.591 50.000 0.00 0.00 0.00 4.92
3737 7798 5.278957 GCTGGTTCATGACAGTTTTTATGGT 60.279 40.000 13.23 0.00 37.07 3.55
3743 7804 2.624838 CAGGCTGGTTCATGACAGTTTT 59.375 45.455 6.61 0.00 37.07 2.43
3775 7836 3.938334 GCAATCTCTCTTCTCTTGGTTCC 59.062 47.826 0.00 0.00 0.00 3.62
3777 7838 4.577875 CAGCAATCTCTCTTCTCTTGGTT 58.422 43.478 0.00 0.00 0.00 3.67
3854 7915 1.105457 TTCGATCCGGGTTATCGTGT 58.895 50.000 19.79 0.00 45.01 4.49
3966 8028 2.979676 CTCCTGGTTGCTTGCGCA 60.980 61.111 5.66 5.66 46.24 6.09
3980 8043 4.087892 TTCGGCTGCTGGCTCTCC 62.088 66.667 15.09 0.00 41.46 3.71
4006 8069 2.874701 GTCGCCGTGGAGATACTACTTA 59.125 50.000 0.00 0.00 0.00 2.24
4007 8070 1.674962 GTCGCCGTGGAGATACTACTT 59.325 52.381 0.00 0.00 0.00 2.24
4036 8099 1.340017 TGGCACTACTTTGGAGATGCC 60.340 52.381 6.11 6.11 43.70 4.40
4037 8100 1.740025 GTGGCACTACTTTGGAGATGC 59.260 52.381 11.13 0.00 32.67 3.91
4038 8101 3.005554 CTGTGGCACTACTTTGGAGATG 58.994 50.000 19.83 0.00 0.00 2.90
4039 8102 2.639839 ACTGTGGCACTACTTTGGAGAT 59.360 45.455 19.83 0.00 0.00 2.75
4040 8103 2.037251 GACTGTGGCACTACTTTGGAGA 59.963 50.000 19.83 0.00 0.00 3.71
4041 8104 2.224281 TGACTGTGGCACTACTTTGGAG 60.224 50.000 19.83 7.47 0.00 3.86
4042 8105 1.765904 TGACTGTGGCACTACTTTGGA 59.234 47.619 19.83 0.00 0.00 3.53
4043 8106 1.873591 GTGACTGTGGCACTACTTTGG 59.126 52.381 19.83 3.08 33.57 3.28
4044 8107 2.802816 GAGTGACTGTGGCACTACTTTG 59.197 50.000 19.83 4.73 45.94 2.77
4174 8408 4.129737 TAGCTGAGACGCCCACGC 62.130 66.667 0.00 0.00 45.53 5.34
4176 8410 1.153745 CACTAGCTGAGACGCCCAC 60.154 63.158 0.00 0.00 0.00 4.61
4177 8411 3.006756 GCACTAGCTGAGACGCCCA 62.007 63.158 0.00 0.00 37.91 5.36
4178 8412 2.202810 GCACTAGCTGAGACGCCC 60.203 66.667 0.00 0.00 37.91 6.13
4179 8413 2.202810 GGCACTAGCTGAGACGCC 60.203 66.667 0.00 4.82 41.70 5.68
4180 8414 1.226831 GAGGCACTAGCTGAGACGC 60.227 63.158 0.00 0.00 41.55 5.19
4181 8415 0.380378 GAGAGGCACTAGCTGAGACG 59.620 60.000 0.00 0.00 41.55 4.18
4182 8416 1.676006 GAGAGAGGCACTAGCTGAGAC 59.324 57.143 0.00 0.00 41.55 3.36
4183 8417 1.563879 AGAGAGAGGCACTAGCTGAGA 59.436 52.381 0.00 0.00 41.55 3.27
4184 8418 1.949525 GAGAGAGAGGCACTAGCTGAG 59.050 57.143 0.00 0.00 41.55 3.35
4185 8419 1.745484 CGAGAGAGAGGCACTAGCTGA 60.745 57.143 0.00 0.00 41.55 4.26
4186 8420 0.662619 CGAGAGAGAGGCACTAGCTG 59.337 60.000 0.00 0.00 41.55 4.24
4187 8421 0.254747 ACGAGAGAGAGGCACTAGCT 59.745 55.000 0.00 0.00 41.55 3.32
4188 8422 1.099689 AACGAGAGAGAGGCACTAGC 58.900 55.000 0.00 0.00 41.55 3.42
4189 8423 2.098443 GGAAACGAGAGAGAGGCACTAG 59.902 54.545 0.00 0.00 41.55 2.57
4190 8424 2.093106 GGAAACGAGAGAGAGGCACTA 58.907 52.381 0.00 0.00 41.55 2.74
4192 8426 0.892063 AGGAAACGAGAGAGAGGCAC 59.108 55.000 0.00 0.00 0.00 5.01
4193 8427 1.178276 GAGGAAACGAGAGAGAGGCA 58.822 55.000 0.00 0.00 0.00 4.75
4299 8552 3.695606 GGGAGGCTGCACACGAGA 61.696 66.667 8.68 0.00 0.00 4.04
4494 8756 1.147153 GGATTTCTCCAGGAGGGCG 59.853 63.158 17.10 0.00 41.64 6.13
4511 8773 1.407989 GGACAAGGGATCTGAGCTTGG 60.408 57.143 0.00 0.00 0.00 3.61
4563 8840 1.604593 GGTGCAACTCCACAGCCAT 60.605 57.895 0.00 0.00 37.46 4.40
4594 8871 1.489649 CTCCATGAGGCCTGACTGAAT 59.510 52.381 12.00 0.00 33.74 2.57
4674 8951 1.001641 AGCAGGCCGAAGCAGAATT 60.002 52.632 17.96 0.00 42.56 2.17
4747 9024 1.682684 CCGCCTCCTGGACACTACT 60.683 63.158 0.00 0.00 34.57 2.57
4811 9088 1.469423 CCCGAGAAACGAAGAGTAGCC 60.469 57.143 0.00 0.00 45.77 3.93
4821 9098 1.636988 AACTATTCGCCCGAGAAACG 58.363 50.000 0.00 0.00 42.18 3.60
4825 9102 0.535335 AGCAAACTATTCGCCCGAGA 59.465 50.000 0.00 0.00 0.00 4.04
4826 9103 1.369625 AAGCAAACTATTCGCCCGAG 58.630 50.000 0.00 0.00 0.00 4.63
4827 9104 1.466950 CAAAGCAAACTATTCGCCCGA 59.533 47.619 0.00 0.00 0.00 5.14
4829 9106 4.016113 CTACAAAGCAAACTATTCGCCC 57.984 45.455 0.00 0.00 0.00 6.13
4848 9140 0.960286 TTTGTTGCTGCATGCTGCTA 59.040 45.000 38.25 31.95 45.31 3.49
4864 9156 5.048013 GTGGTAGGAGGAACAAGGATTTTTG 60.048 44.000 0.00 0.00 0.00 2.44
4912 9219 4.339530 TGGTTCAGTAAGATCATCTCGAGG 59.660 45.833 13.56 0.00 0.00 4.63
4934 9253 6.129179 AGGGAGTATTAACCAATGACCATTG 58.871 40.000 14.10 14.10 45.77 2.82
4953 9272 4.691216 CAGACTAAAAAGAAACGGAGGGAG 59.309 45.833 0.00 0.00 0.00 4.30
4954 9273 4.638304 CAGACTAAAAAGAAACGGAGGGA 58.362 43.478 0.00 0.00 0.00 4.20
4955 9274 3.188667 GCAGACTAAAAAGAAACGGAGGG 59.811 47.826 0.00 0.00 0.00 4.30
4956 9275 3.813166 TGCAGACTAAAAAGAAACGGAGG 59.187 43.478 0.00 0.00 0.00 4.30
4957 9276 5.613358 ATGCAGACTAAAAAGAAACGGAG 57.387 39.130 0.00 0.00 0.00 4.63
4958 9277 8.780846 TTATATGCAGACTAAAAAGAAACGGA 57.219 30.769 0.00 0.00 0.00 4.69
4959 9278 8.122952 CCTTATATGCAGACTAAAAAGAAACGG 58.877 37.037 0.00 0.00 0.00 4.44
4960 9279 8.665685 ACCTTATATGCAGACTAAAAAGAAACG 58.334 33.333 0.00 0.00 0.00 3.60
4964 9283 8.956426 CCAAACCTTATATGCAGACTAAAAAGA 58.044 33.333 0.00 0.00 0.00 2.52
4965 9284 8.739972 ACCAAACCTTATATGCAGACTAAAAAG 58.260 33.333 0.00 0.00 0.00 2.27
4966 9285 8.644374 ACCAAACCTTATATGCAGACTAAAAA 57.356 30.769 0.00 0.00 0.00 1.94
4967 9286 7.885922 TGACCAAACCTTATATGCAGACTAAAA 59.114 33.333 0.00 0.00 0.00 1.52
4968 9287 7.398829 TGACCAAACCTTATATGCAGACTAAA 58.601 34.615 0.00 0.00 0.00 1.85
4969 9288 6.953101 TGACCAAACCTTATATGCAGACTAA 58.047 36.000 0.00 0.00 0.00 2.24
4970 9289 6.553953 TGACCAAACCTTATATGCAGACTA 57.446 37.500 0.00 0.00 0.00 2.59
4971 9290 5.435686 TGACCAAACCTTATATGCAGACT 57.564 39.130 0.00 0.00 0.00 3.24
4972 9291 6.151144 ACTTTGACCAAACCTTATATGCAGAC 59.849 38.462 0.00 0.00 0.00 3.51
4973 9292 6.245408 ACTTTGACCAAACCTTATATGCAGA 58.755 36.000 0.00 0.00 0.00 4.26
4974 9293 6.150976 TGACTTTGACCAAACCTTATATGCAG 59.849 38.462 0.00 0.00 0.00 4.41
4975 9294 6.007076 TGACTTTGACCAAACCTTATATGCA 58.993 36.000 0.00 0.00 0.00 3.96
4976 9295 6.509418 TGACTTTGACCAAACCTTATATGC 57.491 37.500 0.00 0.00 0.00 3.14
4977 9296 7.029563 GCTTGACTTTGACCAAACCTTATATG 58.970 38.462 0.00 0.00 0.00 1.78
4978 9297 6.948309 AGCTTGACTTTGACCAAACCTTATAT 59.052 34.615 0.00 0.00 0.00 0.86
4979 9298 6.303839 AGCTTGACTTTGACCAAACCTTATA 58.696 36.000 0.00 0.00 0.00 0.98
4980 9299 5.140454 AGCTTGACTTTGACCAAACCTTAT 58.860 37.500 0.00 0.00 0.00 1.73
4981 9300 4.532834 AGCTTGACTTTGACCAAACCTTA 58.467 39.130 0.00 0.00 0.00 2.69
4982 9301 3.365472 AGCTTGACTTTGACCAAACCTT 58.635 40.909 0.00 0.00 0.00 3.50
4983 9302 3.018423 AGCTTGACTTTGACCAAACCT 57.982 42.857 0.00 0.00 0.00 3.50
4984 9303 3.801114 AAGCTTGACTTTGACCAAACC 57.199 42.857 0.00 0.00 33.71 3.27
4997 9316 8.276252 AGTTAGTCAAACTTTACAAAGCTTGA 57.724 30.769 13.75 13.75 46.61 3.02
5052 9371 9.304335 TGGTGCATCTGATAATATTGATTTCAT 57.696 29.630 0.00 0.00 0.00 2.57
5053 9372 8.694581 TGGTGCATCTGATAATATTGATTTCA 57.305 30.769 0.00 0.00 0.00 2.69
5054 9373 9.569167 CATGGTGCATCTGATAATATTGATTTC 57.431 33.333 0.00 0.00 0.00 2.17
5055 9374 9.304335 TCATGGTGCATCTGATAATATTGATTT 57.696 29.630 0.00 0.00 0.00 2.17
5056 9375 8.873186 TCATGGTGCATCTGATAATATTGATT 57.127 30.769 0.00 0.00 0.00 2.57
5057 9376 8.873186 TTCATGGTGCATCTGATAATATTGAT 57.127 30.769 0.00 0.00 0.00 2.57
5058 9377 8.570488 GTTTCATGGTGCATCTGATAATATTGA 58.430 33.333 0.00 0.00 0.00 2.57
5059 9378 7.536281 CGTTTCATGGTGCATCTGATAATATTG 59.464 37.037 0.00 0.00 0.00 1.90
5060 9379 7.229306 ACGTTTCATGGTGCATCTGATAATATT 59.771 33.333 0.00 0.00 0.00 1.28
5061 9380 6.712095 ACGTTTCATGGTGCATCTGATAATAT 59.288 34.615 0.00 0.00 0.00 1.28
5062 9381 6.054941 ACGTTTCATGGTGCATCTGATAATA 58.945 36.000 0.00 0.00 0.00 0.98
5063 9382 4.883585 ACGTTTCATGGTGCATCTGATAAT 59.116 37.500 0.00 0.00 0.00 1.28
5064 9383 4.260985 ACGTTTCATGGTGCATCTGATAA 58.739 39.130 0.00 0.00 0.00 1.75
5065 9384 3.872696 ACGTTTCATGGTGCATCTGATA 58.127 40.909 0.00 0.00 0.00 2.15
5066 9385 2.715046 ACGTTTCATGGTGCATCTGAT 58.285 42.857 0.00 0.00 0.00 2.90
5067 9386 2.183478 ACGTTTCATGGTGCATCTGA 57.817 45.000 0.00 0.00 0.00 3.27
5068 9387 4.621068 AATACGTTTCATGGTGCATCTG 57.379 40.909 0.00 0.00 0.00 2.90
5069 9388 5.640732 GAAAATACGTTTCATGGTGCATCT 58.359 37.500 0.00 0.00 44.42 2.90
5070 9389 5.932021 GAAAATACGTTTCATGGTGCATC 57.068 39.130 0.00 0.00 44.42 3.91
5149 9468 6.657541 TGGTCAAAGTCAAACTAGACAAAGTT 59.342 34.615 0.00 0.00 41.46 2.66
5150 9469 6.177610 TGGTCAAAGTCAAACTAGACAAAGT 58.822 36.000 0.00 0.00 40.98 2.66
5151 9470 6.677781 TGGTCAAAGTCAAACTAGACAAAG 57.322 37.500 0.00 0.00 40.98 2.77
5152 9471 7.455641 TTTGGTCAAAGTCAAACTAGACAAA 57.544 32.000 0.00 6.63 40.98 2.83
5153 9472 7.556275 AGATTTGGTCAAAGTCAAACTAGACAA 59.444 33.333 0.00 2.02 40.98 3.18
5154 9473 7.054124 AGATTTGGTCAAAGTCAAACTAGACA 58.946 34.615 0.00 0.00 40.98 3.41
5155 9474 7.497925 AGATTTGGTCAAAGTCAAACTAGAC 57.502 36.000 0.00 4.80 35.97 2.59
5156 9475 9.793259 ATAAGATTTGGTCAAAGTCAAACTAGA 57.207 29.630 0.00 0.00 35.97 2.43
5160 9479 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
5161 9480 7.967854 CGCATATAAGATTTGGTCAAAGTCAAA 59.032 33.333 2.55 0.00 37.29 2.69
5162 9481 7.415095 CCGCATATAAGATTTGGTCAAAGTCAA 60.415 37.037 2.55 0.00 33.32 3.18
5163 9482 6.038161 CCGCATATAAGATTTGGTCAAAGTCA 59.962 38.462 2.55 0.00 33.32 3.41
5164 9483 6.260050 TCCGCATATAAGATTTGGTCAAAGTC 59.740 38.462 2.55 1.51 33.32 3.01
5165 9484 6.119536 TCCGCATATAAGATTTGGTCAAAGT 58.880 36.000 2.55 0.00 33.32 2.66
5166 9485 6.260936 ACTCCGCATATAAGATTTGGTCAAAG 59.739 38.462 2.55 0.00 33.32 2.77
5167 9486 6.119536 ACTCCGCATATAAGATTTGGTCAAA 58.880 36.000 0.00 0.00 34.46 2.69
5168 9487 5.680619 ACTCCGCATATAAGATTTGGTCAA 58.319 37.500 0.00 0.00 0.00 3.18
5169 9488 5.290493 ACTCCGCATATAAGATTTGGTCA 57.710 39.130 0.00 0.00 0.00 4.02
5170 9489 7.724305 TTTACTCCGCATATAAGATTTGGTC 57.276 36.000 0.00 0.00 0.00 4.02
5171 9490 8.514330 TTTTTACTCCGCATATAAGATTTGGT 57.486 30.769 0.00 0.00 0.00 3.67
5172 9491 8.836413 TCTTTTTACTCCGCATATAAGATTTGG 58.164 33.333 0.00 0.00 0.00 3.28
5176 9495 8.548721 CGTTTCTTTTTACTCCGCATATAAGAT 58.451 33.333 0.00 0.00 0.00 2.40
5177 9496 7.010738 CCGTTTCTTTTTACTCCGCATATAAGA 59.989 37.037 0.00 0.00 0.00 2.10
5178 9497 7.123830 CCGTTTCTTTTTACTCCGCATATAAG 58.876 38.462 0.00 0.00 0.00 1.73
5179 9498 6.037391 CCCGTTTCTTTTTACTCCGCATATAA 59.963 38.462 0.00 0.00 0.00 0.98
5180 9499 5.524646 CCCGTTTCTTTTTACTCCGCATATA 59.475 40.000 0.00 0.00 0.00 0.86
5181 9500 4.334481 CCCGTTTCTTTTTACTCCGCATAT 59.666 41.667 0.00 0.00 0.00 1.78
5182 9501 3.685756 CCCGTTTCTTTTTACTCCGCATA 59.314 43.478 0.00 0.00 0.00 3.14
5183 9502 2.486592 CCCGTTTCTTTTTACTCCGCAT 59.513 45.455 0.00 0.00 0.00 4.73
5184 9503 1.874872 CCCGTTTCTTTTTACTCCGCA 59.125 47.619 0.00 0.00 0.00 5.69
5185 9504 1.198408 CCCCGTTTCTTTTTACTCCGC 59.802 52.381 0.00 0.00 0.00 5.54
5186 9505 1.808343 CCCCCGTTTCTTTTTACTCCG 59.192 52.381 0.00 0.00 0.00 4.63
5203 9522 1.059913 AGTGCTATGCATACTCCCCC 58.940 55.000 1.16 0.00 41.91 5.40
5204 9523 2.158755 ACAAGTGCTATGCATACTCCCC 60.159 50.000 1.16 0.00 41.91 4.81
5205 9524 3.199880 ACAAGTGCTATGCATACTCCC 57.800 47.619 1.16 0.00 41.91 4.30
5206 9525 4.191544 TCAACAAGTGCTATGCATACTCC 58.808 43.478 1.16 0.00 41.91 3.85
5207 9526 5.352569 AGTTCAACAAGTGCTATGCATACTC 59.647 40.000 1.16 0.00 41.91 2.59
5208 9527 5.248640 AGTTCAACAAGTGCTATGCATACT 58.751 37.500 1.16 0.00 41.91 2.12
5209 9528 5.551760 AGTTCAACAAGTGCTATGCATAC 57.448 39.130 1.16 0.00 41.91 2.39
5210 9529 5.163864 CGAAGTTCAACAAGTGCTATGCATA 60.164 40.000 6.20 6.20 41.91 3.14
5211 9530 4.378770 CGAAGTTCAACAAGTGCTATGCAT 60.379 41.667 3.79 3.79 41.91 3.96
5228 9547 9.511272 ACTATTTATTCCTAAACAACCGAAGTT 57.489 29.630 0.00 0.00 36.33 2.66
5282 9601 5.797051 ACCTGCAGCATTGTTTGATTTAAT 58.203 33.333 8.66 0.00 0.00 1.40
5289 9608 2.060326 CAGACCTGCAGCATTGTTTG 57.940 50.000 8.66 2.52 0.00 2.93
5333 9652 2.158885 GGAACCTCTGTATCCAGCTTCC 60.159 54.545 0.00 0.00 38.66 3.46
5407 9726 4.890158 TGGCTGAACATACTTCTCTCAA 57.110 40.909 0.00 0.00 0.00 3.02
5440 9759 2.247437 GCGATCCAGCGGTCCATTC 61.247 63.158 0.00 0.00 0.00 2.67
5484 9803 3.499918 CAGCAAGGGTAGAACAAGTTGAG 59.500 47.826 10.54 0.00 0.00 3.02
5562 9881 3.761752 ACAGGCGCCAAAATACTTGTATT 59.238 39.130 31.54 0.00 0.00 1.89
5607 9926 4.751767 AGAAAAACTGCCAAATGGTTGA 57.248 36.364 0.71 0.00 36.83 3.18
5614 9933 4.023291 AGGTCTGAAGAAAAACTGCCAAA 58.977 39.130 0.00 0.00 0.00 3.28
5650 9975 5.006386 ACACATCAGAAGGCTTAAAAGAGG 58.994 41.667 0.00 0.34 0.00 3.69
5674 9999 2.961741 TCTCTGCTCTATGGACACATCC 59.038 50.000 0.00 0.00 46.48 3.51
5676 10001 3.641046 ACTCTCTGCTCTATGGACACAT 58.359 45.455 0.00 0.00 41.13 3.21
5677 10002 3.093057 ACTCTCTGCTCTATGGACACA 57.907 47.619 0.00 0.00 0.00 3.72
5679 10004 3.027412 GGAACTCTCTGCTCTATGGACA 58.973 50.000 0.00 0.00 0.00 4.02
5690 10026 9.787435 AAGATAGTACTATGTAGGAACTCTCTG 57.213 37.037 20.13 0.00 41.75 3.35
5711 10047 9.778741 GGATGATTGTAGTAACATTGGAAGATA 57.221 33.333 0.00 0.00 34.97 1.98
5712 10048 8.274322 TGGATGATTGTAGTAACATTGGAAGAT 58.726 33.333 0.00 0.00 34.97 2.40
5791 10127 2.078392 GCAAAGTGCAATTTGGATGGG 58.922 47.619 33.13 13.51 44.26 4.00
5896 10243 1.049289 AGCCGAGGGTCCTCCATAAC 61.049 60.000 11.08 0.00 39.77 1.89
5947 10300 4.325344 CCCCTACTTCTCCACCAATCAAAT 60.325 45.833 0.00 0.00 0.00 2.32
6045 12826 0.946221 GACACTTCACTCGTGGCCTG 60.946 60.000 3.32 0.00 34.29 4.85
6052 12833 0.526211 TCCGATGGACACTTCACTCG 59.474 55.000 0.00 0.00 0.00 4.18
6089 12870 2.998670 CGTGATGATTGCAGCCCTATAG 59.001 50.000 0.00 0.00 0.00 1.31
6090 12871 2.871637 GCGTGATGATTGCAGCCCTATA 60.872 50.000 0.00 0.00 0.00 1.31
6091 12872 1.888215 CGTGATGATTGCAGCCCTAT 58.112 50.000 0.00 0.00 0.00 2.57
6135 12916 7.441903 ACATATCATCCTGGTATCATGCATA 57.558 36.000 0.00 0.00 0.00 3.14
6196 12977 2.126307 CACGACGGTCAGCCTCAG 60.126 66.667 9.10 0.00 0.00 3.35
6249 13030 0.756903 ATGCCGACTACGCCCTTAAT 59.243 50.000 0.00 0.00 38.29 1.40
6260 13369 2.729479 CCTCTGCTCCATGCCGACT 61.729 63.158 0.00 0.00 42.00 4.18
6335 13444 2.030628 TCGTCTAGTCAAACATCGTGCA 60.031 45.455 0.00 0.00 0.00 4.57
6395 13504 1.207329 GTAGCAACCTACCTGGGACTG 59.793 57.143 0.00 0.00 38.38 3.51
6396 13505 1.569653 GTAGCAACCTACCTGGGACT 58.430 55.000 0.00 0.00 38.38 3.85
6397 13506 0.175073 CGTAGCAACCTACCTGGGAC 59.825 60.000 0.00 0.00 40.69 4.46
6398 13507 0.974010 CCGTAGCAACCTACCTGGGA 60.974 60.000 0.00 0.00 40.69 4.37
6399 13508 1.520666 CCGTAGCAACCTACCTGGG 59.479 63.158 0.00 0.00 40.69 4.45
6400 13509 1.153429 GCCGTAGCAACCTACCTGG 60.153 63.158 0.00 0.00 40.69 4.45
6401 13510 4.515404 GCCGTAGCAACCTACCTG 57.485 61.111 0.00 0.00 40.69 4.00
6439 13548 8.890410 TGAGGAACTTAACCTACACTAATACT 57.110 34.615 0.00 0.00 41.55 2.12
6440 13549 9.933723 TTTGAGGAACTTAACCTACACTAATAC 57.066 33.333 0.00 0.00 41.55 1.89
6559 13750 0.111089 GCGAGCTCAAAACTCACGTG 60.111 55.000 15.40 9.94 33.58 4.49
6564 13755 2.408050 TCTGAAGCGAGCTCAAAACTC 58.592 47.619 15.40 3.13 0.00 3.01
6565 13756 2.533266 TCTGAAGCGAGCTCAAAACT 57.467 45.000 15.40 1.99 0.00 2.66
6566 13757 3.242739 TGTTTCTGAAGCGAGCTCAAAAC 60.243 43.478 15.40 11.45 0.00 2.43
6567 13758 2.942376 TGTTTCTGAAGCGAGCTCAAAA 59.058 40.909 15.40 0.00 0.00 2.44
6568 13759 2.560504 TGTTTCTGAAGCGAGCTCAAA 58.439 42.857 15.40 1.63 0.00 2.69
6569 13760 2.238942 TGTTTCTGAAGCGAGCTCAA 57.761 45.000 15.40 0.00 0.00 3.02
6582 13773 4.277423 CGTGTTATTTCCCCTGTTGTTTCT 59.723 41.667 0.00 0.00 0.00 2.52
6583 13774 4.037089 ACGTGTTATTTCCCCTGTTGTTTC 59.963 41.667 0.00 0.00 0.00 2.78
6589 13780 3.867216 GCACTACGTGTTATTTCCCCTGT 60.867 47.826 0.00 0.00 35.75 4.00
6610 15450 0.982673 CTGTTGTGCTCGTACGTAGC 59.017 55.000 23.84 23.84 40.50 3.58
6614 15454 2.348218 GGAAAACTGTTGTGCTCGTACG 60.348 50.000 9.53 9.53 0.00 3.67
6627 15467 3.314553 CATTGCAGCAAGAGGAAAACTG 58.685 45.455 14.47 0.00 0.00 3.16
6648 15488 2.031191 CGGACGGTTGGTGTATAATTGC 59.969 50.000 0.00 0.00 0.00 3.56
6649 15489 3.264104 ACGGACGGTTGGTGTATAATTG 58.736 45.455 0.00 0.00 0.00 2.32
6650 15490 3.524541 GACGGACGGTTGGTGTATAATT 58.475 45.455 0.00 0.00 0.00 1.40
6652 15492 1.204467 GGACGGACGGTTGGTGTATAA 59.796 52.381 0.00 0.00 0.00 0.98
6653 15493 0.817013 GGACGGACGGTTGGTGTATA 59.183 55.000 0.00 0.00 0.00 1.47
6654 15494 1.186917 TGGACGGACGGTTGGTGTAT 61.187 55.000 0.00 0.00 0.00 2.29
6655 15495 1.186917 ATGGACGGACGGTTGGTGTA 61.187 55.000 0.00 0.00 0.00 2.90
6657 15497 1.740296 GATGGACGGACGGTTGGTG 60.740 63.158 0.00 0.00 0.00 4.17
6658 15498 2.660802 GATGGACGGACGGTTGGT 59.339 61.111 0.00 0.00 0.00 3.67
6711 15575 1.823899 GTCAATGATGGACGGGGGC 60.824 63.158 0.00 0.00 0.00 5.80
6714 15578 1.523711 CGGGTCAATGATGGACGGG 60.524 63.158 0.00 0.00 36.12 5.28
6715 15579 2.180204 GCGGGTCAATGATGGACGG 61.180 63.158 0.00 0.00 36.12 4.79
6717 15581 0.392998 ACAGCGGGTCAATGATGGAC 60.393 55.000 0.00 0.00 34.52 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.