Multiple sequence alignment - TraesCS4D01G062000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G062000 chr4D 100.000 2753 0 0 1 2753 37611670 37608918 0.000000e+00 5084.0
1 TraesCS4D01G062000 chr4D 83.682 239 24 9 130 356 235509242 235509007 7.720000e-51 211.0
2 TraesCS4D01G062000 chr4B 94.891 2114 75 19 493 2597 54865073 54862984 0.000000e+00 3275.0
3 TraesCS4D01G062000 chr4B 80.769 312 44 12 130 431 474295713 474296018 2.130000e-56 230.0
4 TraesCS4D01G062000 chr4B 89.820 167 12 2 2576 2739 54862607 54862443 2.780000e-50 209.0
5 TraesCS4D01G062000 chr4A 96.448 1830 44 5 716 2538 563679672 563677857 0.000000e+00 3000.0
6 TraesCS4D01G062000 chr4A 81.967 244 24 13 130 359 618901399 618901636 3.620000e-44 189.0
7 TraesCS4D01G062000 chr4A 82.902 193 15 12 129 305 33641002 33641192 1.020000e-34 158.0
8 TraesCS4D01G062000 chr4A 80.258 233 27 14 130 346 628516669 628516440 1.020000e-34 158.0
9 TraesCS4D01G062000 chr7B 80.220 1638 268 35 847 2455 586244541 586246151 0.000000e+00 1179.0
10 TraesCS4D01G062000 chr7B 97.222 36 1 0 460 495 199976077 199976042 8.230000e-06 62.1
11 TraesCS4D01G062000 chr7A 79.841 1632 282 35 847 2455 624959655 624961262 0.000000e+00 1147.0
12 TraesCS4D01G062000 chr7D 81.339 1404 235 18 847 2232 542978966 542980360 0.000000e+00 1116.0
13 TraesCS4D01G062000 chr7D 83.794 253 36 3 1896 2144 543006704 543006955 4.580000e-58 235.0
14 TraesCS4D01G062000 chr7D 85.039 127 11 6 129 249 109019353 109019477 3.720000e-24 122.0
15 TraesCS4D01G062000 chrUn 80.734 327 40 11 130 436 293110834 293110511 1.650000e-57 233.0
16 TraesCS4D01G062000 chr6D 83.871 217 25 8 130 341 468120889 468121100 6.010000e-47 198.0
17 TraesCS4D01G062000 chr6D 100.000 30 0 0 466 495 1762331 1762360 3.830000e-04 56.5
18 TraesCS4D01G062000 chr6D 100.000 30 0 0 466 495 1807764 1807735 3.830000e-04 56.5
19 TraesCS4D01G062000 chr6B 83.333 210 21 10 132 329 671403537 671403744 6.060000e-42 182.0
20 TraesCS4D01G062000 chr5D 82.251 231 22 14 130 346 508574105 508574330 6.060000e-42 182.0
21 TraesCS4D01G062000 chr3D 83.333 180 22 4 257 436 12843465 12843636 2.840000e-35 159.0
22 TraesCS4D01G062000 chr3B 83.871 155 17 4 257 411 18436373 18436519 1.030000e-29 141.0
23 TraesCS4D01G062000 chr3B 100.000 30 0 0 466 495 56343424 56343395 3.830000e-04 56.5
24 TraesCS4D01G062000 chr1D 92.784 97 4 3 130 225 382758588 382758494 1.330000e-28 137.0
25 TraesCS4D01G062000 chr5B 84.496 129 16 2 461 588 54199634 54199509 1.040000e-24 124.0
26 TraesCS4D01G062000 chr5B 83.594 128 17 2 461 587 54395577 54395453 1.730000e-22 117.0
27 TraesCS4D01G062000 chr2B 97.059 34 1 0 462 495 218292590 218292557 1.060000e-04 58.4
28 TraesCS4D01G062000 chr2A 97.059 34 1 0 462 495 650624062 650624029 1.060000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G062000 chr4D 37608918 37611670 2752 True 5084 5084 100.0000 1 2753 1 chr4D.!!$R1 2752
1 TraesCS4D01G062000 chr4B 54862443 54865073 2630 True 1742 3275 92.3555 493 2739 2 chr4B.!!$R1 2246
2 TraesCS4D01G062000 chr4A 563677857 563679672 1815 True 3000 3000 96.4480 716 2538 1 chr4A.!!$R1 1822
3 TraesCS4D01G062000 chr7B 586244541 586246151 1610 False 1179 1179 80.2200 847 2455 1 chr7B.!!$F1 1608
4 TraesCS4D01G062000 chr7A 624959655 624961262 1607 False 1147 1147 79.8410 847 2455 1 chr7A.!!$F1 1608
5 TraesCS4D01G062000 chr7D 542978966 542980360 1394 False 1116 1116 81.3390 847 2232 1 chr7D.!!$F2 1385

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
392 393 0.028770 CTCCGCTAGCTCGTCAGAAG 59.971 60.0 13.93 0.0 0.0 2.85 F
394 395 0.171455 CCGCTAGCTCGTCAGAAGTT 59.829 55.0 13.93 0.0 0.0 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1695 1696 1.065109 CGTCATGTACGCCATCGGA 59.935 57.895 5.07 0.00 46.10 4.55 R
2278 2324 1.816835 TCTGCTTCCTGGTACGTACAG 59.183 52.381 26.02 19.44 35.74 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.067011 CGGACATATAGGGGGCAGA 57.933 57.895 0.00 0.00 0.00 4.26
19 20 1.573108 CGGACATATAGGGGGCAGAT 58.427 55.000 0.00 0.00 0.00 2.90
20 21 1.909302 CGGACATATAGGGGGCAGATT 59.091 52.381 0.00 0.00 0.00 2.40
21 22 2.305927 CGGACATATAGGGGGCAGATTT 59.694 50.000 0.00 0.00 0.00 2.17
22 23 3.690460 GGACATATAGGGGGCAGATTTG 58.310 50.000 0.00 0.00 0.00 2.32
23 24 3.330701 GGACATATAGGGGGCAGATTTGA 59.669 47.826 0.00 0.00 0.00 2.69
24 25 4.327680 GACATATAGGGGGCAGATTTGAC 58.672 47.826 0.00 0.00 0.00 3.18
32 33 0.740737 GGCAGATTTGACCATTCCGG 59.259 55.000 0.00 0.00 42.50 5.14
42 43 3.719699 CCATTCCGGTTGTTGATGC 57.280 52.632 0.00 0.00 0.00 3.91
43 44 1.176527 CCATTCCGGTTGTTGATGCT 58.823 50.000 0.00 0.00 0.00 3.79
44 45 1.133025 CCATTCCGGTTGTTGATGCTC 59.867 52.381 0.00 0.00 0.00 4.26
45 46 2.086869 CATTCCGGTTGTTGATGCTCT 58.913 47.619 0.00 0.00 0.00 4.09
46 47 3.270027 CATTCCGGTTGTTGATGCTCTA 58.730 45.455 0.00 0.00 0.00 2.43
47 48 3.410631 TTCCGGTTGTTGATGCTCTAA 57.589 42.857 0.00 0.00 0.00 2.10
48 49 3.410631 TCCGGTTGTTGATGCTCTAAA 57.589 42.857 0.00 0.00 0.00 1.85
49 50 3.745799 TCCGGTTGTTGATGCTCTAAAA 58.254 40.909 0.00 0.00 0.00 1.52
50 51 4.331968 TCCGGTTGTTGATGCTCTAAAAT 58.668 39.130 0.00 0.00 0.00 1.82
51 52 5.492895 TCCGGTTGTTGATGCTCTAAAATA 58.507 37.500 0.00 0.00 0.00 1.40
52 53 6.119536 TCCGGTTGTTGATGCTCTAAAATAT 58.880 36.000 0.00 0.00 0.00 1.28
53 54 7.276658 TCCGGTTGTTGATGCTCTAAAATATA 58.723 34.615 0.00 0.00 0.00 0.86
54 55 7.936847 TCCGGTTGTTGATGCTCTAAAATATAT 59.063 33.333 0.00 0.00 0.00 0.86
55 56 8.567948 CCGGTTGTTGATGCTCTAAAATATATT 58.432 33.333 0.00 0.00 0.00 1.28
56 57 9.599322 CGGTTGTTGATGCTCTAAAATATATTC 57.401 33.333 0.00 0.00 0.00 1.75
123 124 9.606631 AACACAAGAGAGTTAATCTATTCCATC 57.393 33.333 0.00 0.00 37.37 3.51
124 125 8.207545 ACACAAGAGAGTTAATCTATTCCATCC 58.792 37.037 0.00 0.00 37.37 3.51
125 126 7.659390 CACAAGAGAGTTAATCTATTCCATCCC 59.341 40.741 0.00 0.00 37.37 3.85
126 127 7.348274 ACAAGAGAGTTAATCTATTCCATCCCA 59.652 37.037 0.00 0.00 37.37 4.37
127 128 7.552050 AGAGAGTTAATCTATTCCATCCCAG 57.448 40.000 0.00 0.00 38.84 4.45
128 129 6.500049 AGAGAGTTAATCTATTCCATCCCAGG 59.500 42.308 0.00 0.00 38.84 4.45
129 130 6.153924 AGAGTTAATCTATTCCATCCCAGGT 58.846 40.000 0.00 0.00 36.10 4.00
130 131 6.043706 AGAGTTAATCTATTCCATCCCAGGTG 59.956 42.308 0.00 0.00 36.10 4.00
131 132 5.672194 AGTTAATCTATTCCATCCCAGGTGT 59.328 40.000 0.00 0.00 0.00 4.16
132 133 6.160459 AGTTAATCTATTCCATCCCAGGTGTT 59.840 38.462 0.00 0.00 0.00 3.32
133 134 7.349859 AGTTAATCTATTCCATCCCAGGTGTTA 59.650 37.037 0.00 0.00 0.00 2.41
134 135 5.832539 ATCTATTCCATCCCAGGTGTTAG 57.167 43.478 0.00 0.00 0.00 2.34
135 136 4.890988 TCTATTCCATCCCAGGTGTTAGA 58.109 43.478 0.00 0.00 0.00 2.10
136 137 4.901849 TCTATTCCATCCCAGGTGTTAGAG 59.098 45.833 0.00 0.00 0.00 2.43
137 138 2.940514 TCCATCCCAGGTGTTAGAGA 57.059 50.000 0.00 0.00 0.00 3.10
138 139 3.421394 TCCATCCCAGGTGTTAGAGAT 57.579 47.619 0.00 0.00 0.00 2.75
139 140 4.552883 TCCATCCCAGGTGTTAGAGATA 57.447 45.455 0.00 0.00 0.00 1.98
140 141 4.223953 TCCATCCCAGGTGTTAGAGATAC 58.776 47.826 0.00 0.00 0.00 2.24
141 142 3.005897 CCATCCCAGGTGTTAGAGATACG 59.994 52.174 0.00 0.00 0.00 3.06
142 143 3.657398 TCCCAGGTGTTAGAGATACGA 57.343 47.619 0.00 0.00 0.00 3.43
143 144 4.180377 TCCCAGGTGTTAGAGATACGAT 57.820 45.455 0.00 0.00 0.00 3.73
144 145 5.314718 TCCCAGGTGTTAGAGATACGATA 57.685 43.478 0.00 0.00 0.00 2.92
145 146 5.698104 TCCCAGGTGTTAGAGATACGATAA 58.302 41.667 0.00 0.00 0.00 1.75
146 147 5.768662 TCCCAGGTGTTAGAGATACGATAAG 59.231 44.000 0.00 0.00 0.00 1.73
147 148 5.047943 CCCAGGTGTTAGAGATACGATAAGG 60.048 48.000 0.00 0.00 0.00 2.69
148 149 5.462405 CAGGTGTTAGAGATACGATAAGGC 58.538 45.833 0.00 0.00 0.00 4.35
149 150 5.009710 CAGGTGTTAGAGATACGATAAGGCA 59.990 44.000 0.00 0.00 0.00 4.75
150 151 5.597182 AGGTGTTAGAGATACGATAAGGCAA 59.403 40.000 0.00 0.00 0.00 4.52
151 152 6.097839 AGGTGTTAGAGATACGATAAGGCAAA 59.902 38.462 0.00 0.00 0.00 3.68
152 153 6.929606 GGTGTTAGAGATACGATAAGGCAAAT 59.070 38.462 0.00 0.00 0.00 2.32
153 154 7.116519 GGTGTTAGAGATACGATAAGGCAAATC 59.883 40.741 0.00 0.00 0.00 2.17
154 155 7.652105 GTGTTAGAGATACGATAAGGCAAATCA 59.348 37.037 0.00 0.00 0.00 2.57
155 156 8.201464 TGTTAGAGATACGATAAGGCAAATCAA 58.799 33.333 0.00 0.00 0.00 2.57
156 157 8.488764 GTTAGAGATACGATAAGGCAAATCAAC 58.511 37.037 0.00 0.00 0.00 3.18
157 158 6.582636 AGAGATACGATAAGGCAAATCAACA 58.417 36.000 0.00 0.00 0.00 3.33
158 159 6.480320 AGAGATACGATAAGGCAAATCAACAC 59.520 38.462 0.00 0.00 0.00 3.32
159 160 3.740044 ACGATAAGGCAAATCAACACG 57.260 42.857 0.00 0.00 0.00 4.49
160 161 3.331150 ACGATAAGGCAAATCAACACGA 58.669 40.909 0.00 0.00 0.00 4.35
161 162 3.938963 ACGATAAGGCAAATCAACACGAT 59.061 39.130 0.00 0.00 35.12 3.73
162 163 4.201812 ACGATAAGGCAAATCAACACGATG 60.202 41.667 0.00 0.00 33.40 3.84
163 164 4.033932 CGATAAGGCAAATCAACACGATGA 59.966 41.667 0.00 0.00 33.40 2.92
164 165 5.447144 CGATAAGGCAAATCAACACGATGAA 60.447 40.000 0.00 0.00 33.40 2.57
165 166 3.837213 AGGCAAATCAACACGATGAAG 57.163 42.857 0.00 0.00 33.40 3.02
166 167 3.411446 AGGCAAATCAACACGATGAAGA 58.589 40.909 0.00 0.00 33.40 2.87
167 168 3.820467 AGGCAAATCAACACGATGAAGAA 59.180 39.130 0.00 0.00 33.40 2.52
168 169 3.914364 GGCAAATCAACACGATGAAGAAC 59.086 43.478 0.00 0.00 33.40 3.01
169 170 3.599514 GCAAATCAACACGATGAAGAACG 59.400 43.478 0.00 0.00 33.40 3.95
170 171 4.610456 GCAAATCAACACGATGAAGAACGA 60.610 41.667 0.00 0.00 33.40 3.85
171 172 5.439828 CAAATCAACACGATGAAGAACGAA 58.560 37.500 0.00 0.00 33.40 3.85
172 173 5.666969 AATCAACACGATGAAGAACGAAA 57.333 34.783 0.00 0.00 33.40 3.46
173 174 5.666969 ATCAACACGATGAAGAACGAAAA 57.333 34.783 0.00 0.00 31.20 2.29
174 175 4.828704 TCAACACGATGAAGAACGAAAAC 58.171 39.130 0.00 0.00 0.00 2.43
175 176 4.330347 TCAACACGATGAAGAACGAAAACA 59.670 37.500 0.00 0.00 0.00 2.83
176 177 4.868450 ACACGATGAAGAACGAAAACAA 57.132 36.364 0.00 0.00 0.00 2.83
177 178 4.833126 ACACGATGAAGAACGAAAACAAG 58.167 39.130 0.00 0.00 0.00 3.16
178 179 3.659444 CACGATGAAGAACGAAAACAAGC 59.341 43.478 0.00 0.00 0.00 4.01
179 180 3.311322 ACGATGAAGAACGAAAACAAGCA 59.689 39.130 0.00 0.00 0.00 3.91
180 181 4.201871 ACGATGAAGAACGAAAACAAGCAA 60.202 37.500 0.00 0.00 0.00 3.91
181 182 4.376861 CGATGAAGAACGAAAACAAGCAAG 59.623 41.667 0.00 0.00 0.00 4.01
182 183 4.027572 TGAAGAACGAAAACAAGCAAGG 57.972 40.909 0.00 0.00 0.00 3.61
183 184 3.181491 TGAAGAACGAAAACAAGCAAGGG 60.181 43.478 0.00 0.00 0.00 3.95
184 185 2.650322 AGAACGAAAACAAGCAAGGGA 58.350 42.857 0.00 0.00 0.00 4.20
185 186 2.357952 AGAACGAAAACAAGCAAGGGAC 59.642 45.455 0.00 0.00 0.00 4.46
186 187 1.757682 ACGAAAACAAGCAAGGGACA 58.242 45.000 0.00 0.00 0.00 4.02
187 188 1.404035 ACGAAAACAAGCAAGGGACAC 59.596 47.619 0.00 0.00 0.00 3.67
188 189 1.596954 CGAAAACAAGCAAGGGACACG 60.597 52.381 0.00 0.00 0.00 4.49
189 190 1.673920 GAAAACAAGCAAGGGACACGA 59.326 47.619 0.00 0.00 0.00 4.35
190 191 1.308998 AAACAAGCAAGGGACACGAG 58.691 50.000 0.00 0.00 0.00 4.18
191 192 0.468226 AACAAGCAAGGGACACGAGA 59.532 50.000 0.00 0.00 0.00 4.04
192 193 0.687354 ACAAGCAAGGGACACGAGAT 59.313 50.000 0.00 0.00 0.00 2.75
193 194 1.072331 ACAAGCAAGGGACACGAGATT 59.928 47.619 0.00 0.00 0.00 2.40
194 195 2.154462 CAAGCAAGGGACACGAGATTT 58.846 47.619 0.00 0.00 0.00 2.17
195 196 3.244422 ACAAGCAAGGGACACGAGATTTA 60.244 43.478 0.00 0.00 0.00 1.40
196 197 3.695830 AGCAAGGGACACGAGATTTAA 57.304 42.857 0.00 0.00 0.00 1.52
197 198 3.335579 AGCAAGGGACACGAGATTTAAC 58.664 45.455 0.00 0.00 0.00 2.01
198 199 2.093783 GCAAGGGACACGAGATTTAACG 59.906 50.000 0.00 0.00 0.00 3.18
199 200 3.323243 CAAGGGACACGAGATTTAACGT 58.677 45.455 0.00 0.00 43.50 3.99
200 201 3.227810 AGGGACACGAGATTTAACGTC 57.772 47.619 0.00 0.00 40.76 4.34
201 202 1.916000 GGGACACGAGATTTAACGTCG 59.084 52.381 0.00 0.00 40.76 5.12
202 203 2.414559 GGGACACGAGATTTAACGTCGA 60.415 50.000 0.00 0.00 40.76 4.20
203 204 3.236816 GGACACGAGATTTAACGTCGAA 58.763 45.455 0.00 0.00 40.76 3.71
204 205 3.670055 GGACACGAGATTTAACGTCGAAA 59.330 43.478 0.00 0.00 40.76 3.46
205 206 4.148696 GGACACGAGATTTAACGTCGAAAA 59.851 41.667 0.00 0.00 40.76 2.29
206 207 4.998295 ACACGAGATTTAACGTCGAAAAC 58.002 39.130 0.00 0.00 40.76 2.43
207 208 4.084900 ACACGAGATTTAACGTCGAAAACC 60.085 41.667 0.00 0.00 40.76 3.27
208 209 3.429881 ACGAGATTTAACGTCGAAAACCC 59.570 43.478 0.00 0.00 38.34 4.11
209 210 3.181527 CGAGATTTAACGTCGAAAACCCC 60.182 47.826 0.00 0.00 35.70 4.95
210 211 3.999001 GAGATTTAACGTCGAAAACCCCT 59.001 43.478 0.00 0.00 0.00 4.79
211 212 3.999001 AGATTTAACGTCGAAAACCCCTC 59.001 43.478 0.00 0.00 0.00 4.30
212 213 2.168326 TTAACGTCGAAAACCCCTCC 57.832 50.000 0.00 0.00 0.00 4.30
213 214 1.047002 TAACGTCGAAAACCCCTCCA 58.953 50.000 0.00 0.00 0.00 3.86
214 215 0.180878 AACGTCGAAAACCCCTCCAA 59.819 50.000 0.00 0.00 0.00 3.53
215 216 0.533531 ACGTCGAAAACCCCTCCAAC 60.534 55.000 0.00 0.00 0.00 3.77
216 217 0.533308 CGTCGAAAACCCCTCCAACA 60.533 55.000 0.00 0.00 0.00 3.33
217 218 1.880646 CGTCGAAAACCCCTCCAACAT 60.881 52.381 0.00 0.00 0.00 2.71
218 219 1.539827 GTCGAAAACCCCTCCAACATG 59.460 52.381 0.00 0.00 0.00 3.21
219 220 1.422024 TCGAAAACCCCTCCAACATGA 59.578 47.619 0.00 0.00 0.00 3.07
220 221 2.158593 TCGAAAACCCCTCCAACATGAA 60.159 45.455 0.00 0.00 0.00 2.57
221 222 2.228822 CGAAAACCCCTCCAACATGAAG 59.771 50.000 0.00 0.00 0.00 3.02
222 223 2.309136 AAACCCCTCCAACATGAAGG 57.691 50.000 0.00 0.00 0.00 3.46
223 224 0.409484 AACCCCTCCAACATGAAGGG 59.591 55.000 15.75 15.75 40.58 3.95
225 226 1.307647 CCCTCCAACATGAAGGGGG 59.692 63.158 17.08 17.08 45.73 5.40
241 242 3.717294 GGGACCACGGGCATCAGT 61.717 66.667 0.00 0.00 0.00 3.41
242 243 2.125106 GGACCACGGGCATCAGTC 60.125 66.667 0.00 0.00 0.00 3.51
243 244 2.662596 GACCACGGGCATCAGTCA 59.337 61.111 0.00 0.00 0.00 3.41
244 245 1.448540 GACCACGGGCATCAGTCAG 60.449 63.158 0.00 0.00 0.00 3.51
245 246 2.821366 CCACGGGCATCAGTCAGC 60.821 66.667 0.00 0.00 0.00 4.26
246 247 2.046988 CACGGGCATCAGTCAGCA 60.047 61.111 0.00 0.00 0.00 4.41
247 248 1.672030 CACGGGCATCAGTCAGCAA 60.672 57.895 0.00 0.00 0.00 3.91
248 249 1.073025 ACGGGCATCAGTCAGCAAA 59.927 52.632 0.00 0.00 0.00 3.68
249 250 0.322816 ACGGGCATCAGTCAGCAAAT 60.323 50.000 0.00 0.00 0.00 2.32
250 251 0.379669 CGGGCATCAGTCAGCAAATC 59.620 55.000 0.00 0.00 0.00 2.17
251 252 1.760192 GGGCATCAGTCAGCAAATCT 58.240 50.000 0.00 0.00 0.00 2.40
252 253 1.674962 GGGCATCAGTCAGCAAATCTC 59.325 52.381 0.00 0.00 0.00 2.75
253 254 1.674962 GGCATCAGTCAGCAAATCTCC 59.325 52.381 0.00 0.00 0.00 3.71
254 255 2.362736 GCATCAGTCAGCAAATCTCCA 58.637 47.619 0.00 0.00 0.00 3.86
255 256 2.950309 GCATCAGTCAGCAAATCTCCAT 59.050 45.455 0.00 0.00 0.00 3.41
256 257 3.243101 GCATCAGTCAGCAAATCTCCATG 60.243 47.826 0.00 0.00 0.00 3.66
257 258 2.995283 TCAGTCAGCAAATCTCCATGG 58.005 47.619 4.97 4.97 0.00 3.66
258 259 2.022195 CAGTCAGCAAATCTCCATGGG 58.978 52.381 13.02 2.57 0.00 4.00
259 260 1.918262 AGTCAGCAAATCTCCATGGGA 59.082 47.619 13.02 8.70 0.00 4.37
262 263 1.064166 CAGCAAATCTCCATGGGAGGT 60.064 52.381 13.02 2.02 46.47 3.85
269 270 4.236527 ATCTCCATGGGAGGTTACAAAC 57.763 45.455 13.02 0.00 40.85 2.93
270 271 3.433306 CTCCATGGGAGGTTACAAACA 57.567 47.619 13.02 0.00 45.43 2.83
271 272 3.968265 CTCCATGGGAGGTTACAAACAT 58.032 45.455 13.02 0.00 45.43 2.71
272 273 3.947834 CTCCATGGGAGGTTACAAACATC 59.052 47.826 13.02 0.00 45.43 3.06
273 274 2.682856 CCATGGGAGGTTACAAACATCG 59.317 50.000 2.85 0.00 42.75 3.84
274 275 2.483014 TGGGAGGTTACAAACATCGG 57.517 50.000 0.00 0.00 42.75 4.18
275 276 1.003812 TGGGAGGTTACAAACATCGGG 59.996 52.381 0.00 0.00 42.75 5.14
276 277 1.680860 GGGAGGTTACAAACATCGGGG 60.681 57.143 0.00 0.00 42.75 5.73
277 278 1.279846 GGAGGTTACAAACATCGGGGA 59.720 52.381 0.00 0.00 42.75 4.81
278 279 2.092592 GGAGGTTACAAACATCGGGGAT 60.093 50.000 0.00 0.00 42.75 3.85
279 280 3.617284 GAGGTTACAAACATCGGGGATT 58.383 45.455 0.00 0.00 32.14 3.01
280 281 4.014406 GAGGTTACAAACATCGGGGATTT 58.986 43.478 0.00 0.00 32.14 2.17
281 282 5.182169 AGGTTACAAACATCGGGGATTTA 57.818 39.130 0.00 0.00 0.00 1.40
282 283 4.945543 AGGTTACAAACATCGGGGATTTAC 59.054 41.667 0.00 0.00 0.00 2.01
283 284 4.701171 GGTTACAAACATCGGGGATTTACA 59.299 41.667 0.00 0.00 0.00 2.41
284 285 5.183522 GGTTACAAACATCGGGGATTTACAA 59.816 40.000 0.00 0.00 0.00 2.41
285 286 4.776795 ACAAACATCGGGGATTTACAAC 57.223 40.909 0.00 0.00 0.00 3.32
286 287 4.403734 ACAAACATCGGGGATTTACAACT 58.596 39.130 0.00 0.00 0.00 3.16
287 288 4.217550 ACAAACATCGGGGATTTACAACTG 59.782 41.667 0.00 0.00 0.00 3.16
288 289 3.992943 ACATCGGGGATTTACAACTGA 57.007 42.857 0.00 0.00 0.00 3.41
289 290 4.503714 ACATCGGGGATTTACAACTGAT 57.496 40.909 0.00 0.00 0.00 2.90
290 291 4.451900 ACATCGGGGATTTACAACTGATC 58.548 43.478 0.00 0.00 0.00 2.92
291 292 4.080582 ACATCGGGGATTTACAACTGATCA 60.081 41.667 0.00 0.00 0.00 2.92
292 293 4.561500 TCGGGGATTTACAACTGATCAA 57.438 40.909 0.00 0.00 0.00 2.57
293 294 4.258543 TCGGGGATTTACAACTGATCAAC 58.741 43.478 0.00 0.00 0.00 3.18
294 295 4.019681 TCGGGGATTTACAACTGATCAACT 60.020 41.667 0.00 0.00 0.00 3.16
295 296 4.332819 CGGGGATTTACAACTGATCAACTC 59.667 45.833 0.00 0.00 0.00 3.01
296 297 5.253330 GGGGATTTACAACTGATCAACTCA 58.747 41.667 0.00 0.00 0.00 3.41
297 298 5.888161 GGGGATTTACAACTGATCAACTCAT 59.112 40.000 0.00 0.00 32.10 2.90
298 299 6.038714 GGGGATTTACAACTGATCAACTCATC 59.961 42.308 0.00 0.00 32.10 2.92
299 300 6.038714 GGGATTTACAACTGATCAACTCATCC 59.961 42.308 0.00 2.12 32.10 3.51
300 301 6.038714 GGATTTACAACTGATCAACTCATCCC 59.961 42.308 0.00 0.00 32.10 3.85
301 302 5.497464 TTACAACTGATCAACTCATCCCA 57.503 39.130 0.00 0.00 32.10 4.37
302 303 4.581309 ACAACTGATCAACTCATCCCAT 57.419 40.909 0.00 0.00 32.10 4.00
303 304 4.267536 ACAACTGATCAACTCATCCCATG 58.732 43.478 0.00 0.00 32.10 3.66
304 305 2.928334 ACTGATCAACTCATCCCATGC 58.072 47.619 0.00 0.00 32.10 4.06
305 306 1.871676 CTGATCAACTCATCCCATGCG 59.128 52.381 0.00 0.00 32.10 4.73
306 307 1.233019 GATCAACTCATCCCATGCGG 58.767 55.000 0.00 0.00 0.00 5.69
307 308 0.820891 ATCAACTCATCCCATGCGGC 60.821 55.000 0.00 0.00 0.00 6.53
308 309 2.514592 AACTCATCCCATGCGGCG 60.515 61.111 0.51 0.51 0.00 6.46
309 310 4.552365 ACTCATCCCATGCGGCGG 62.552 66.667 9.78 0.00 0.00 6.13
313 314 3.872603 ATCCCATGCGGCGGCTTA 61.873 61.111 17.76 0.00 40.82 3.09
314 315 4.849310 TCCCATGCGGCGGCTTAC 62.849 66.667 17.76 0.00 40.82 2.34
316 317 3.130819 CCATGCGGCGGCTTACAA 61.131 61.111 17.76 0.00 40.82 2.41
317 318 2.695759 CCATGCGGCGGCTTACAAA 61.696 57.895 17.76 0.00 40.82 2.83
318 319 1.226379 CATGCGGCGGCTTACAAAG 60.226 57.895 17.76 0.00 40.82 2.77
319 320 1.376683 ATGCGGCGGCTTACAAAGA 60.377 52.632 17.76 0.00 40.82 2.52
320 321 0.958382 ATGCGGCGGCTTACAAAGAA 60.958 50.000 17.76 0.00 40.82 2.52
321 322 0.958382 TGCGGCGGCTTACAAAGAAT 60.958 50.000 17.76 0.00 40.82 2.40
322 323 1.011333 GCGGCGGCTTACAAAGAATA 58.989 50.000 9.78 0.00 35.83 1.75
323 324 1.602377 GCGGCGGCTTACAAAGAATAT 59.398 47.619 9.78 0.00 35.83 1.28
324 325 2.803956 GCGGCGGCTTACAAAGAATATA 59.196 45.455 9.78 0.00 35.83 0.86
325 326 3.435671 GCGGCGGCTTACAAAGAATATAT 59.564 43.478 9.78 0.00 35.83 0.86
326 327 4.628333 GCGGCGGCTTACAAAGAATATATA 59.372 41.667 9.78 0.00 35.83 0.86
327 328 5.293569 GCGGCGGCTTACAAAGAATATATAT 59.706 40.000 9.78 0.00 35.83 0.86
328 329 6.477688 GCGGCGGCTTACAAAGAATATATATA 59.522 38.462 9.78 0.00 35.83 0.86
329 330 7.170998 GCGGCGGCTTACAAAGAATATATATAT 59.829 37.037 9.78 0.00 35.83 0.86
330 331 9.687210 CGGCGGCTTACAAAGAATATATATATA 57.313 33.333 7.61 4.92 0.00 0.86
354 355 9.905713 ATAACACATGTGACCTAGAACAATATT 57.094 29.630 31.94 12.52 0.00 1.28
355 356 7.615582 ACACATGTGACCTAGAACAATATTG 57.384 36.000 31.94 14.01 0.00 1.90
356 357 7.394016 ACACATGTGACCTAGAACAATATTGA 58.606 34.615 31.94 0.00 0.00 2.57
357 358 8.049117 ACACATGTGACCTAGAACAATATTGAT 58.951 33.333 31.94 10.40 0.00 2.57
358 359 8.554528 CACATGTGACCTAGAACAATATTGATC 58.445 37.037 21.64 18.74 0.00 2.92
359 360 7.439356 ACATGTGACCTAGAACAATATTGATCG 59.561 37.037 22.16 9.48 35.42 3.69
360 361 6.280643 TGTGACCTAGAACAATATTGATCGG 58.719 40.000 22.16 17.41 35.42 4.18
361 362 5.177696 GTGACCTAGAACAATATTGATCGGC 59.822 44.000 22.16 9.72 35.42 5.54
362 363 4.307432 ACCTAGAACAATATTGATCGGCG 58.693 43.478 22.16 13.08 35.42 6.46
363 364 4.038763 ACCTAGAACAATATTGATCGGCGA 59.961 41.667 22.16 13.87 35.42 5.54
364 365 5.171476 CCTAGAACAATATTGATCGGCGAT 58.829 41.667 24.26 24.26 35.42 4.58
365 366 4.997905 AGAACAATATTGATCGGCGATG 57.002 40.909 29.20 15.06 35.42 3.84
366 367 3.748048 AGAACAATATTGATCGGCGATGG 59.252 43.478 29.20 2.40 35.42 3.51
367 368 2.426522 ACAATATTGATCGGCGATGGG 58.573 47.619 29.20 10.30 0.00 4.00
368 369 1.131126 CAATATTGATCGGCGATGGGC 59.869 52.381 29.20 13.69 42.51 5.36
377 378 4.899239 GCGATGGGCCTCACTCCG 62.899 72.222 4.53 5.55 34.80 4.63
378 379 4.899239 CGATGGGCCTCACTCCGC 62.899 72.222 4.53 0.00 0.00 5.54
379 380 3.474570 GATGGGCCTCACTCCGCT 61.475 66.667 4.53 0.00 0.00 5.52
380 381 2.041922 ATGGGCCTCACTCCGCTA 60.042 61.111 4.53 0.00 0.00 4.26
381 382 2.093537 GATGGGCCTCACTCCGCTAG 62.094 65.000 4.53 0.00 0.00 3.42
382 383 4.228567 GGGCCTCACTCCGCTAGC 62.229 72.222 4.06 4.06 0.00 3.42
383 384 3.151022 GGCCTCACTCCGCTAGCT 61.151 66.667 13.93 0.00 0.00 3.32
384 385 2.415426 GCCTCACTCCGCTAGCTC 59.585 66.667 13.93 0.00 0.00 4.09
385 386 2.718731 CCTCACTCCGCTAGCTCG 59.281 66.667 13.93 2.52 0.00 5.03
386 387 2.115911 CCTCACTCCGCTAGCTCGT 61.116 63.158 13.93 3.88 0.00 4.18
387 388 1.353804 CTCACTCCGCTAGCTCGTC 59.646 63.158 13.93 0.00 0.00 4.20
388 389 1.369839 CTCACTCCGCTAGCTCGTCA 61.370 60.000 13.93 0.00 0.00 4.35
389 390 1.063327 CACTCCGCTAGCTCGTCAG 59.937 63.158 13.93 3.65 0.00 3.51
390 391 1.078356 ACTCCGCTAGCTCGTCAGA 60.078 57.895 13.93 0.00 0.00 3.27
391 392 0.677098 ACTCCGCTAGCTCGTCAGAA 60.677 55.000 13.93 0.00 0.00 3.02
392 393 0.028770 CTCCGCTAGCTCGTCAGAAG 59.971 60.000 13.93 0.00 0.00 2.85
393 394 0.677098 TCCGCTAGCTCGTCAGAAGT 60.677 55.000 13.93 0.00 0.00 3.01
394 395 0.171455 CCGCTAGCTCGTCAGAAGTT 59.829 55.000 13.93 0.00 0.00 2.66
395 396 1.400846 CCGCTAGCTCGTCAGAAGTTA 59.599 52.381 13.93 0.00 0.00 2.24
396 397 2.159421 CCGCTAGCTCGTCAGAAGTTAA 60.159 50.000 13.93 0.00 0.00 2.01
397 398 3.499048 CGCTAGCTCGTCAGAAGTTAAA 58.501 45.455 13.93 0.00 0.00 1.52
398 399 3.301116 CGCTAGCTCGTCAGAAGTTAAAC 59.699 47.826 13.93 0.00 0.00 2.01
399 400 4.487019 GCTAGCTCGTCAGAAGTTAAACT 58.513 43.478 7.70 0.00 0.00 2.66
400 401 4.924462 GCTAGCTCGTCAGAAGTTAAACTT 59.076 41.667 7.70 0.00 41.95 2.66
401 402 5.405873 GCTAGCTCGTCAGAAGTTAAACTTT 59.594 40.000 7.70 0.00 38.80 2.66
402 403 5.908916 AGCTCGTCAGAAGTTAAACTTTC 57.091 39.130 0.00 0.00 38.80 2.62
403 404 5.602628 AGCTCGTCAGAAGTTAAACTTTCT 58.397 37.500 0.00 0.00 38.80 2.52
404 405 5.692654 AGCTCGTCAGAAGTTAAACTTTCTC 59.307 40.000 0.00 0.00 38.80 2.87
405 406 5.692654 GCTCGTCAGAAGTTAAACTTTCTCT 59.307 40.000 0.00 0.00 38.80 3.10
406 407 6.201234 GCTCGTCAGAAGTTAAACTTTCTCTT 59.799 38.462 0.00 0.00 38.80 2.85
407 408 7.254488 GCTCGTCAGAAGTTAAACTTTCTCTTT 60.254 37.037 0.00 0.00 38.80 2.52
408 409 9.245962 CTCGTCAGAAGTTAAACTTTCTCTTTA 57.754 33.333 0.00 0.00 38.80 1.85
409 410 9.760077 TCGTCAGAAGTTAAACTTTCTCTTTAT 57.240 29.630 0.00 0.00 38.80 1.40
437 438 8.586570 TTGAATTTGAATCATAACACAACACC 57.413 30.769 0.00 0.00 0.00 4.16
438 439 7.720442 TGAATTTGAATCATAACACAACACCA 58.280 30.769 0.00 0.00 0.00 4.17
439 440 7.866898 TGAATTTGAATCATAACACAACACCAG 59.133 33.333 0.00 0.00 0.00 4.00
440 441 5.703978 TTGAATCATAACACAACACCAGG 57.296 39.130 0.00 0.00 0.00 4.45
441 442 4.979335 TGAATCATAACACAACACCAGGA 58.021 39.130 0.00 0.00 0.00 3.86
442 443 5.569355 TGAATCATAACACAACACCAGGAT 58.431 37.500 0.00 0.00 0.00 3.24
443 444 6.009589 TGAATCATAACACAACACCAGGATT 58.990 36.000 0.00 0.00 0.00 3.01
444 445 7.171653 TGAATCATAACACAACACCAGGATTA 58.828 34.615 0.00 0.00 0.00 1.75
445 446 7.336679 TGAATCATAACACAACACCAGGATTAG 59.663 37.037 0.00 0.00 0.00 1.73
446 447 6.367374 TCATAACACAACACCAGGATTAGA 57.633 37.500 0.00 0.00 0.00 2.10
447 448 6.774673 TCATAACACAACACCAGGATTAGAA 58.225 36.000 0.00 0.00 0.00 2.10
448 449 6.878923 TCATAACACAACACCAGGATTAGAAG 59.121 38.462 0.00 0.00 0.00 2.85
449 450 3.412386 ACACAACACCAGGATTAGAAGC 58.588 45.455 0.00 0.00 0.00 3.86
450 451 2.749621 CACAACACCAGGATTAGAAGCC 59.250 50.000 0.00 0.00 33.78 4.35
452 453 3.074538 ACAACACCAGGATTAGAAGCCTT 59.925 43.478 0.00 0.00 43.56 4.35
453 454 4.082125 CAACACCAGGATTAGAAGCCTTT 58.918 43.478 0.00 0.00 43.56 3.11
454 455 4.388577 ACACCAGGATTAGAAGCCTTTT 57.611 40.909 0.00 0.00 43.56 2.27
455 456 5.514500 ACACCAGGATTAGAAGCCTTTTA 57.486 39.130 0.00 0.00 43.56 1.52
456 457 6.079712 ACACCAGGATTAGAAGCCTTTTAT 57.920 37.500 0.00 0.00 43.56 1.40
457 458 6.494059 ACACCAGGATTAGAAGCCTTTTATT 58.506 36.000 0.00 0.00 43.56 1.40
458 459 6.378280 ACACCAGGATTAGAAGCCTTTTATTG 59.622 38.462 0.00 0.00 43.56 1.90
459 460 6.603201 CACCAGGATTAGAAGCCTTTTATTGA 59.397 38.462 0.00 0.00 43.56 2.57
460 461 7.286316 CACCAGGATTAGAAGCCTTTTATTGAT 59.714 37.037 0.00 0.00 43.56 2.57
461 462 7.503902 ACCAGGATTAGAAGCCTTTTATTGATC 59.496 37.037 0.00 0.00 43.56 2.92
462 463 7.308229 CCAGGATTAGAAGCCTTTTATTGATCG 60.308 40.741 0.00 0.00 43.56 3.69
463 464 6.712547 AGGATTAGAAGCCTTTTATTGATCGG 59.287 38.462 0.00 0.00 43.56 4.18
464 465 5.751243 TTAGAAGCCTTTTATTGATCGGC 57.249 39.130 0.00 0.00 40.99 5.54
465 466 3.620488 AGAAGCCTTTTATTGATCGGCA 58.380 40.909 8.05 0.00 43.07 5.69
466 467 4.016444 AGAAGCCTTTTATTGATCGGCAA 58.984 39.130 8.05 0.00 43.07 4.52
468 469 4.311816 AGCCTTTTATTGATCGGCAATG 57.688 40.909 12.65 0.40 46.38 2.82
469 470 3.701040 AGCCTTTTATTGATCGGCAATGT 59.299 39.130 12.65 0.00 46.38 2.71
470 471 4.160252 AGCCTTTTATTGATCGGCAATGTT 59.840 37.500 12.65 0.00 46.38 2.71
471 472 5.359576 AGCCTTTTATTGATCGGCAATGTTA 59.640 36.000 12.65 0.00 46.38 2.41
472 473 6.039616 GCCTTTTATTGATCGGCAATGTTAA 58.960 36.000 12.65 4.35 46.38 2.01
473 474 6.533367 GCCTTTTATTGATCGGCAATGTTAAA 59.467 34.615 12.65 9.67 46.38 1.52
474 475 7.064016 GCCTTTTATTGATCGGCAATGTTAAAA 59.936 33.333 12.65 10.55 46.38 1.52
475 476 8.930760 CCTTTTATTGATCGGCAATGTTAAAAA 58.069 29.630 12.65 10.31 46.38 1.94
478 479 9.868277 TTTATTGATCGGCAATGTTAAAAATCT 57.132 25.926 12.65 0.00 46.38 2.40
479 480 7.760131 ATTGATCGGCAATGTTAAAAATCTG 57.240 32.000 4.06 0.00 45.27 2.90
480 481 6.507958 TGATCGGCAATGTTAAAAATCTGA 57.492 33.333 0.00 0.00 0.00 3.27
481 482 6.321717 TGATCGGCAATGTTAAAAATCTGAC 58.678 36.000 0.00 0.00 0.00 3.51
482 483 4.717991 TCGGCAATGTTAAAAATCTGACG 58.282 39.130 0.00 0.00 36.65 4.35
483 484 4.214545 TCGGCAATGTTAAAAATCTGACGT 59.785 37.500 0.00 0.00 36.68 4.34
484 485 4.553429 CGGCAATGTTAAAAATCTGACGTC 59.447 41.667 9.11 9.11 30.77 4.34
485 486 5.457140 GGCAATGTTAAAAATCTGACGTCA 58.543 37.500 18.88 18.88 0.00 4.35
486 487 5.569059 GGCAATGTTAAAAATCTGACGTCAG 59.431 40.000 34.76 34.76 45.08 3.51
504 505 8.081633 TGACGTCAGATTTTTAATGCTCAAAAT 58.918 29.630 15.76 0.00 35.69 1.82
513 514 8.673626 TTTTTAATGCTCAAAATCTGACGATC 57.326 30.769 0.00 0.00 0.00 3.69
529 530 4.007282 ACGATCAAATTTGTCATGCGAG 57.993 40.909 17.47 5.22 0.00 5.03
537 538 6.149973 TCAAATTTGTCATGCGAGAAGAGATT 59.850 34.615 17.47 0.00 0.00 2.40
576 577 9.062524 TGTGTATAAGGATTTGCCATGTTATAC 57.937 33.333 9.81 9.81 37.80 1.47
595 596 8.339714 TGTTATACAGCGAAAATTGCCTTATAC 58.660 33.333 0.00 0.00 0.00 1.47
597 598 5.235305 ACAGCGAAAATTGCCTTATACAG 57.765 39.130 0.00 0.00 0.00 2.74
600 601 6.542370 ACAGCGAAAATTGCCTTATACAGTAT 59.458 34.615 0.00 0.00 0.00 2.12
602 603 8.223769 CAGCGAAAATTGCCTTATACAGTATAG 58.776 37.037 0.50 0.00 0.00 1.31
603 604 7.015877 GCGAAAATTGCCTTATACAGTATAGC 58.984 38.462 0.50 3.20 0.00 2.97
604 605 7.307751 GCGAAAATTGCCTTATACAGTATAGCA 60.308 37.037 9.45 9.45 0.00 3.49
642 643 6.071952 AGGAAAAACATCATGCTACAACGATT 60.072 34.615 0.00 0.00 0.00 3.34
649 650 7.409697 ACATCATGCTACAACGATTAATTGTC 58.590 34.615 8.83 0.00 40.68 3.18
650 651 6.976636 TCATGCTACAACGATTAATTGTCA 57.023 33.333 8.83 3.09 40.68 3.58
651 652 7.552458 TCATGCTACAACGATTAATTGTCAT 57.448 32.000 8.83 5.20 40.68 3.06
652 653 8.655651 TCATGCTACAACGATTAATTGTCATA 57.344 30.769 8.83 4.29 40.68 2.15
653 654 8.547894 TCATGCTACAACGATTAATTGTCATAC 58.452 33.333 8.83 0.03 40.68 2.39
654 655 7.835634 TGCTACAACGATTAATTGTCATACA 57.164 32.000 8.83 2.41 40.68 2.29
656 657 8.888716 TGCTACAACGATTAATTGTCATACATT 58.111 29.630 8.83 0.00 40.68 2.71
657 658 9.370126 GCTACAACGATTAATTGTCATACATTC 57.630 33.333 8.83 0.00 40.68 2.67
670 671 3.576550 TCATACATTCGATCGGGATCCAA 59.423 43.478 16.41 0.55 34.40 3.53
671 672 2.240493 ACATTCGATCGGGATCCAAC 57.760 50.000 16.41 0.00 34.40 3.77
679 680 0.323633 TCGGGATCCAACGTACCTGA 60.324 55.000 15.23 0.00 35.74 3.86
682 683 0.535335 GGATCCAACGTACCTGAGCA 59.465 55.000 6.95 0.00 0.00 4.26
700 701 4.398044 TGAGCACGTCAGACATTAGATGTA 59.602 41.667 0.41 0.00 45.03 2.29
701 702 4.673441 AGCACGTCAGACATTAGATGTAC 58.327 43.478 0.41 0.00 45.03 2.90
702 703 4.399618 AGCACGTCAGACATTAGATGTACT 59.600 41.667 0.41 0.00 45.03 2.73
703 704 5.589050 AGCACGTCAGACATTAGATGTACTA 59.411 40.000 0.41 0.00 45.03 1.82
706 707 7.534578 GCACGTCAGACATTAGATGTACTATAC 59.465 40.741 0.41 0.00 45.03 1.47
759 760 4.398988 TGCAATCACAAAAGAGTTCACACT 59.601 37.500 0.00 0.00 35.17 3.55
817 818 0.730155 CGCAACAGCGTGCATTGAAT 60.730 50.000 11.62 0.00 45.19 2.57
834 835 3.426615 TGAATTGTGGCCGAAAACCTAT 58.573 40.909 0.00 0.00 0.00 2.57
1203 1204 1.812922 GCCGATGCAGAGTGTGAGG 60.813 63.158 0.00 0.00 37.47 3.86
1851 1896 4.016629 CAAGCGCGCTCAAGCACA 62.017 61.111 36.57 0.00 42.21 4.57
1888 1933 2.460918 CCGGCACTAACATCGAGTAAG 58.539 52.381 0.00 0.00 0.00 2.34
2275 2321 1.878522 GATCGGCGCTGTAGTGTGG 60.879 63.158 17.37 0.00 0.00 4.17
2276 2322 2.558554 GATCGGCGCTGTAGTGTGGT 62.559 60.000 17.37 0.00 0.00 4.16
2278 2324 1.804326 CGGCGCTGTAGTGTGGTAC 60.804 63.158 8.45 0.00 0.00 3.34
2465 2538 4.753877 CGCTCGCGTCGTCTTGGA 62.754 66.667 5.77 0.00 34.35 3.53
2466 2539 3.173240 GCTCGCGTCGTCTTGGAC 61.173 66.667 5.77 0.00 0.00 4.02
2467 2540 2.561885 CTCGCGTCGTCTTGGACT 59.438 61.111 5.77 0.00 34.75 3.85
2468 2541 1.512310 CTCGCGTCGTCTTGGACTC 60.512 63.158 5.77 0.00 34.75 3.36
2469 2542 1.913451 CTCGCGTCGTCTTGGACTCT 61.913 60.000 5.77 0.00 34.75 3.24
2470 2543 1.081376 CGCGTCGTCTTGGACTCTT 60.081 57.895 0.00 0.00 34.75 2.85
2471 2544 1.337817 CGCGTCGTCTTGGACTCTTG 61.338 60.000 0.00 0.00 34.75 3.02
2472 2545 1.009389 GCGTCGTCTTGGACTCTTGG 61.009 60.000 0.00 0.00 34.75 3.61
2552 2646 4.480115 TGTCCACTTAAGGTCTTCAGAGA 58.520 43.478 7.53 0.00 0.00 3.10
2553 2647 4.524714 TGTCCACTTAAGGTCTTCAGAGAG 59.475 45.833 7.53 0.00 31.07 3.20
2589 3082 8.288217 TGTACAAATTTTCCACTTTAATTCGC 57.712 30.769 0.00 0.00 0.00 4.70
2604 3097 0.317436 TTCGCGTTGTGGAAATGCAC 60.317 50.000 5.77 0.00 32.66 4.57
2607 3100 1.782044 GCGTTGTGGAAATGCACAAT 58.218 45.000 20.78 0.00 42.31 2.71
2628 3121 6.942005 ACAATCCTACTGTCATGTCATTTTGA 59.058 34.615 0.00 0.00 0.00 2.69
2629 3122 7.613022 ACAATCCTACTGTCATGTCATTTTGAT 59.387 33.333 0.00 0.00 0.00 2.57
2645 3138 3.829886 TTGATTCGCACAGGATTGAAC 57.170 42.857 0.00 0.00 0.00 3.18
2648 3141 4.512484 TGATTCGCACAGGATTGAACATA 58.488 39.130 0.00 0.00 0.00 2.29
2649 3142 4.571984 TGATTCGCACAGGATTGAACATAG 59.428 41.667 0.00 0.00 0.00 2.23
2650 3143 2.279741 TCGCACAGGATTGAACATAGC 58.720 47.619 0.00 0.00 0.00 2.97
2651 3144 2.093500 TCGCACAGGATTGAACATAGCT 60.093 45.455 0.00 0.00 0.00 3.32
2652 3145 2.679837 CGCACAGGATTGAACATAGCTT 59.320 45.455 0.00 0.00 0.00 3.74
2653 3146 3.127548 CGCACAGGATTGAACATAGCTTT 59.872 43.478 0.00 0.00 0.00 3.51
2654 3147 4.666237 GCACAGGATTGAACATAGCTTTC 58.334 43.478 0.00 0.00 0.00 2.62
2655 3148 4.439289 GCACAGGATTGAACATAGCTTTCC 60.439 45.833 0.00 0.00 0.00 3.13
2656 3149 4.701651 CACAGGATTGAACATAGCTTTCCA 59.298 41.667 0.00 0.00 0.00 3.53
2673 3169 6.267471 AGCTTTCCACCAAAAATATTGTCTGA 59.733 34.615 0.00 0.00 0.00 3.27
2677 3173 6.934056 TCCACCAAAAATATTGTCTGATTGG 58.066 36.000 0.00 0.00 41.18 3.16
2709 3205 9.894783 GACTATTGGAAGAACTTTTAAAAGACC 57.105 33.333 29.97 22.09 39.31 3.85
2741 3237 9.623350 TTTAAACCAACAAATAATTACTACGCC 57.377 29.630 0.00 0.00 0.00 5.68
2742 3238 5.823209 ACCAACAAATAATTACTACGCCC 57.177 39.130 0.00 0.00 0.00 6.13
2743 3239 5.503002 ACCAACAAATAATTACTACGCCCT 58.497 37.500 0.00 0.00 0.00 5.19
2744 3240 5.587443 ACCAACAAATAATTACTACGCCCTC 59.413 40.000 0.00 0.00 0.00 4.30
2745 3241 5.820947 CCAACAAATAATTACTACGCCCTCT 59.179 40.000 0.00 0.00 0.00 3.69
2746 3242 6.987992 CCAACAAATAATTACTACGCCCTCTA 59.012 38.462 0.00 0.00 0.00 2.43
2747 3243 7.660208 CCAACAAATAATTACTACGCCCTCTAT 59.340 37.037 0.00 0.00 0.00 1.98
2748 3244 8.709646 CAACAAATAATTACTACGCCCTCTATC 58.290 37.037 0.00 0.00 0.00 2.08
2749 3245 7.384477 ACAAATAATTACTACGCCCTCTATCC 58.616 38.462 0.00 0.00 0.00 2.59
2750 3246 6.541934 AATAATTACTACGCCCTCTATCCC 57.458 41.667 0.00 0.00 0.00 3.85
2751 3247 3.537795 ATTACTACGCCCTCTATCCCA 57.462 47.619 0.00 0.00 0.00 4.37
2752 3248 3.537795 TTACTACGCCCTCTATCCCAT 57.462 47.619 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.573108 ATCTGCCCCCTATATGTCCG 58.427 55.000 0.00 0.00 0.00 4.79
1 2 3.330701 TCAAATCTGCCCCCTATATGTCC 59.669 47.826 0.00 0.00 0.00 4.02
2 3 4.327680 GTCAAATCTGCCCCCTATATGTC 58.672 47.826 0.00 0.00 0.00 3.06
3 4 3.074538 GGTCAAATCTGCCCCCTATATGT 59.925 47.826 0.00 0.00 0.00 2.29
4 5 3.074390 TGGTCAAATCTGCCCCCTATATG 59.926 47.826 0.00 0.00 0.00 1.78
5 6 3.335748 TGGTCAAATCTGCCCCCTATAT 58.664 45.455 0.00 0.00 0.00 0.86
6 7 2.782922 TGGTCAAATCTGCCCCCTATA 58.217 47.619 0.00 0.00 0.00 1.31
7 8 1.607225 TGGTCAAATCTGCCCCCTAT 58.393 50.000 0.00 0.00 0.00 2.57
8 9 1.607225 ATGGTCAAATCTGCCCCCTA 58.393 50.000 0.00 0.00 0.00 3.53
9 10 0.712380 AATGGTCAAATCTGCCCCCT 59.288 50.000 0.00 0.00 0.00 4.79
10 11 1.114627 GAATGGTCAAATCTGCCCCC 58.885 55.000 0.00 0.00 0.00 5.40
11 12 1.114627 GGAATGGTCAAATCTGCCCC 58.885 55.000 0.00 0.00 0.00 5.80
12 13 0.740737 CGGAATGGTCAAATCTGCCC 59.259 55.000 0.00 0.00 0.00 5.36
13 14 0.740737 CCGGAATGGTCAAATCTGCC 59.259 55.000 0.00 0.00 0.00 4.85
22 23 5.269048 GAGCATCAACAACCGGAATGGTC 62.269 52.174 9.46 12.35 43.66 4.02
23 24 3.458287 GAGCATCAACAACCGGAATGGT 61.458 50.000 9.46 1.63 45.81 3.55
24 25 1.133025 GAGCATCAACAACCGGAATGG 59.867 52.381 9.46 0.00 38.57 3.16
25 26 2.086869 AGAGCATCAACAACCGGAATG 58.913 47.619 9.46 9.74 37.82 2.67
26 27 2.496899 AGAGCATCAACAACCGGAAT 57.503 45.000 9.46 0.00 37.82 3.01
27 28 3.410631 TTAGAGCATCAACAACCGGAA 57.589 42.857 9.46 0.00 37.82 4.30
28 29 3.410631 TTTAGAGCATCAACAACCGGA 57.589 42.857 9.46 0.00 37.82 5.14
29 30 4.701956 ATTTTAGAGCATCAACAACCGG 57.298 40.909 0.00 0.00 37.82 5.28
30 31 9.599322 GAATATATTTTAGAGCATCAACAACCG 57.401 33.333 0.00 0.00 37.82 4.44
97 98 9.606631 GATGGAATAGATTAACTCTCTTGTGTT 57.393 33.333 0.00 0.00 35.28 3.32
98 99 8.207545 GGATGGAATAGATTAACTCTCTTGTGT 58.792 37.037 0.00 0.00 35.28 3.72
99 100 7.659390 GGGATGGAATAGATTAACTCTCTTGTG 59.341 40.741 0.00 0.00 35.28 3.33
100 101 7.348274 TGGGATGGAATAGATTAACTCTCTTGT 59.652 37.037 0.00 0.00 35.28 3.16
101 102 7.739825 TGGGATGGAATAGATTAACTCTCTTG 58.260 38.462 0.00 0.00 35.28 3.02
102 103 7.017056 CCTGGGATGGAATAGATTAACTCTCTT 59.983 40.741 0.00 0.00 35.28 2.85
103 104 6.500049 CCTGGGATGGAATAGATTAACTCTCT 59.500 42.308 0.00 0.00 35.28 3.10
104 105 6.271159 ACCTGGGATGGAATAGATTAACTCTC 59.729 42.308 0.00 0.00 35.28 3.20
105 106 6.043706 CACCTGGGATGGAATAGATTAACTCT 59.956 42.308 0.00 0.00 38.06 3.24
106 107 6.183361 ACACCTGGGATGGAATAGATTAACTC 60.183 42.308 0.00 0.00 0.00 3.01
107 108 5.672194 ACACCTGGGATGGAATAGATTAACT 59.328 40.000 0.00 0.00 0.00 2.24
108 109 5.941788 ACACCTGGGATGGAATAGATTAAC 58.058 41.667 0.00 0.00 0.00 2.01
109 110 6.590656 AACACCTGGGATGGAATAGATTAA 57.409 37.500 0.00 0.00 0.00 1.40
110 111 7.079700 TCTAACACCTGGGATGGAATAGATTA 58.920 38.462 0.00 0.00 0.00 1.75
111 112 5.911178 TCTAACACCTGGGATGGAATAGATT 59.089 40.000 0.00 0.00 0.00 2.40
112 113 5.476983 TCTAACACCTGGGATGGAATAGAT 58.523 41.667 0.00 0.00 0.00 1.98
113 114 4.890988 TCTAACACCTGGGATGGAATAGA 58.109 43.478 0.00 0.00 0.00 1.98
114 115 4.901849 TCTCTAACACCTGGGATGGAATAG 59.098 45.833 0.00 0.00 0.00 1.73
115 116 4.890988 TCTCTAACACCTGGGATGGAATA 58.109 43.478 0.00 0.00 0.00 1.75
116 117 3.736094 TCTCTAACACCTGGGATGGAAT 58.264 45.455 0.00 0.00 0.00 3.01
117 118 3.199442 TCTCTAACACCTGGGATGGAA 57.801 47.619 0.00 0.00 0.00 3.53
118 119 2.940514 TCTCTAACACCTGGGATGGA 57.059 50.000 0.00 0.00 0.00 3.41
119 120 3.005897 CGTATCTCTAACACCTGGGATGG 59.994 52.174 0.00 0.00 0.00 3.51
120 121 3.889538 TCGTATCTCTAACACCTGGGATG 59.110 47.826 0.00 0.00 0.00 3.51
121 122 4.180377 TCGTATCTCTAACACCTGGGAT 57.820 45.455 0.00 0.00 0.00 3.85
122 123 3.657398 TCGTATCTCTAACACCTGGGA 57.343 47.619 0.00 0.00 0.00 4.37
123 124 5.047943 CCTTATCGTATCTCTAACACCTGGG 60.048 48.000 0.00 0.00 0.00 4.45
124 125 5.565045 GCCTTATCGTATCTCTAACACCTGG 60.565 48.000 0.00 0.00 0.00 4.45
125 126 5.009710 TGCCTTATCGTATCTCTAACACCTG 59.990 44.000 0.00 0.00 0.00 4.00
126 127 5.138276 TGCCTTATCGTATCTCTAACACCT 58.862 41.667 0.00 0.00 0.00 4.00
127 128 5.449107 TGCCTTATCGTATCTCTAACACC 57.551 43.478 0.00 0.00 0.00 4.16
128 129 7.652105 TGATTTGCCTTATCGTATCTCTAACAC 59.348 37.037 0.00 0.00 0.00 3.32
129 130 7.722363 TGATTTGCCTTATCGTATCTCTAACA 58.278 34.615 0.00 0.00 0.00 2.41
130 131 8.488764 GTTGATTTGCCTTATCGTATCTCTAAC 58.511 37.037 0.00 0.00 0.00 2.34
131 132 8.201464 TGTTGATTTGCCTTATCGTATCTCTAA 58.799 33.333 0.00 0.00 0.00 2.10
132 133 7.652105 GTGTTGATTTGCCTTATCGTATCTCTA 59.348 37.037 0.00 0.00 0.00 2.43
133 134 6.480320 GTGTTGATTTGCCTTATCGTATCTCT 59.520 38.462 0.00 0.00 0.00 3.10
134 135 6.562270 CGTGTTGATTTGCCTTATCGTATCTC 60.562 42.308 0.00 0.00 0.00 2.75
135 136 5.234329 CGTGTTGATTTGCCTTATCGTATCT 59.766 40.000 0.00 0.00 0.00 1.98
136 137 5.233476 TCGTGTTGATTTGCCTTATCGTATC 59.767 40.000 0.00 0.00 0.00 2.24
137 138 5.113383 TCGTGTTGATTTGCCTTATCGTAT 58.887 37.500 0.00 0.00 0.00 3.06
138 139 4.496360 TCGTGTTGATTTGCCTTATCGTA 58.504 39.130 0.00 0.00 0.00 3.43
139 140 3.331150 TCGTGTTGATTTGCCTTATCGT 58.669 40.909 0.00 0.00 0.00 3.73
140 141 4.033932 TCATCGTGTTGATTTGCCTTATCG 59.966 41.667 0.00 0.00 34.13 2.92
141 142 5.484173 TCATCGTGTTGATTTGCCTTATC 57.516 39.130 0.00 0.00 34.13 1.75
142 143 5.647658 TCTTCATCGTGTTGATTTGCCTTAT 59.352 36.000 0.00 0.00 34.13 1.73
143 144 5.000591 TCTTCATCGTGTTGATTTGCCTTA 58.999 37.500 0.00 0.00 34.13 2.69
144 145 3.820467 TCTTCATCGTGTTGATTTGCCTT 59.180 39.130 0.00 0.00 34.13 4.35
145 146 3.411446 TCTTCATCGTGTTGATTTGCCT 58.589 40.909 0.00 0.00 34.13 4.75
146 147 3.829886 TCTTCATCGTGTTGATTTGCC 57.170 42.857 0.00 0.00 34.13 4.52
147 148 3.599514 CGTTCTTCATCGTGTTGATTTGC 59.400 43.478 0.00 0.00 34.13 3.68
148 149 5.017484 TCGTTCTTCATCGTGTTGATTTG 57.983 39.130 0.00 0.00 34.13 2.32
149 150 5.666969 TTCGTTCTTCATCGTGTTGATTT 57.333 34.783 0.00 0.00 34.13 2.17
150 151 5.666969 TTTCGTTCTTCATCGTGTTGATT 57.333 34.783 0.00 0.00 34.13 2.57
151 152 5.007234 TGTTTTCGTTCTTCATCGTGTTGAT 59.993 36.000 0.00 0.00 38.01 2.57
152 153 4.330347 TGTTTTCGTTCTTCATCGTGTTGA 59.670 37.500 0.00 0.00 0.00 3.18
153 154 4.583426 TGTTTTCGTTCTTCATCGTGTTG 58.417 39.130 0.00 0.00 0.00 3.33
154 155 4.868450 TGTTTTCGTTCTTCATCGTGTT 57.132 36.364 0.00 0.00 0.00 3.32
155 156 4.785341 GCTTGTTTTCGTTCTTCATCGTGT 60.785 41.667 0.00 0.00 0.00 4.49
156 157 3.659444 GCTTGTTTTCGTTCTTCATCGTG 59.341 43.478 0.00 0.00 0.00 4.35
157 158 3.311322 TGCTTGTTTTCGTTCTTCATCGT 59.689 39.130 0.00 0.00 0.00 3.73
158 159 3.872354 TGCTTGTTTTCGTTCTTCATCG 58.128 40.909 0.00 0.00 0.00 3.84
159 160 4.676924 CCTTGCTTGTTTTCGTTCTTCATC 59.323 41.667 0.00 0.00 0.00 2.92
160 161 4.499696 CCCTTGCTTGTTTTCGTTCTTCAT 60.500 41.667 0.00 0.00 0.00 2.57
161 162 3.181491 CCCTTGCTTGTTTTCGTTCTTCA 60.181 43.478 0.00 0.00 0.00 3.02
162 163 3.066203 TCCCTTGCTTGTTTTCGTTCTTC 59.934 43.478 0.00 0.00 0.00 2.87
163 164 3.020984 TCCCTTGCTTGTTTTCGTTCTT 58.979 40.909 0.00 0.00 0.00 2.52
164 165 2.357952 GTCCCTTGCTTGTTTTCGTTCT 59.642 45.455 0.00 0.00 0.00 3.01
165 166 2.098443 TGTCCCTTGCTTGTTTTCGTTC 59.902 45.455 0.00 0.00 0.00 3.95
166 167 2.096248 TGTCCCTTGCTTGTTTTCGTT 58.904 42.857 0.00 0.00 0.00 3.85
167 168 1.404035 GTGTCCCTTGCTTGTTTTCGT 59.596 47.619 0.00 0.00 0.00 3.85
168 169 1.596954 CGTGTCCCTTGCTTGTTTTCG 60.597 52.381 0.00 0.00 0.00 3.46
169 170 1.673920 TCGTGTCCCTTGCTTGTTTTC 59.326 47.619 0.00 0.00 0.00 2.29
170 171 1.676006 CTCGTGTCCCTTGCTTGTTTT 59.324 47.619 0.00 0.00 0.00 2.43
171 172 1.134220 TCTCGTGTCCCTTGCTTGTTT 60.134 47.619 0.00 0.00 0.00 2.83
172 173 0.468226 TCTCGTGTCCCTTGCTTGTT 59.532 50.000 0.00 0.00 0.00 2.83
173 174 0.687354 ATCTCGTGTCCCTTGCTTGT 59.313 50.000 0.00 0.00 0.00 3.16
174 175 1.813513 AATCTCGTGTCCCTTGCTTG 58.186 50.000 0.00 0.00 0.00 4.01
175 176 2.568623 AAATCTCGTGTCCCTTGCTT 57.431 45.000 0.00 0.00 0.00 3.91
176 177 3.335579 GTTAAATCTCGTGTCCCTTGCT 58.664 45.455 0.00 0.00 0.00 3.91
177 178 2.093783 CGTTAAATCTCGTGTCCCTTGC 59.906 50.000 0.00 0.00 0.00 4.01
178 179 3.323243 ACGTTAAATCTCGTGTCCCTTG 58.677 45.455 0.00 0.00 38.85 3.61
179 180 3.582780 GACGTTAAATCTCGTGTCCCTT 58.417 45.455 0.00 0.00 40.39 3.95
180 181 2.415090 CGACGTTAAATCTCGTGTCCCT 60.415 50.000 0.00 0.00 40.39 4.20
181 182 1.916000 CGACGTTAAATCTCGTGTCCC 59.084 52.381 0.00 0.00 40.39 4.46
182 183 2.855180 TCGACGTTAAATCTCGTGTCC 58.145 47.619 0.00 0.00 40.39 4.02
183 184 4.873789 TTTCGACGTTAAATCTCGTGTC 57.126 40.909 0.00 0.00 40.39 3.67
184 185 4.084900 GGTTTTCGACGTTAAATCTCGTGT 60.085 41.667 0.00 0.00 40.39 4.49
185 186 4.380290 GGTTTTCGACGTTAAATCTCGTG 58.620 43.478 0.00 0.00 40.39 4.35
186 187 3.429881 GGGTTTTCGACGTTAAATCTCGT 59.570 43.478 0.00 0.00 43.00 4.18
187 188 3.181527 GGGGTTTTCGACGTTAAATCTCG 60.182 47.826 0.00 0.00 0.00 4.04
188 189 3.999001 AGGGGTTTTCGACGTTAAATCTC 59.001 43.478 0.00 0.00 0.00 2.75
189 190 3.999001 GAGGGGTTTTCGACGTTAAATCT 59.001 43.478 0.00 0.00 0.00 2.40
190 191 3.125829 GGAGGGGTTTTCGACGTTAAATC 59.874 47.826 0.00 0.00 0.00 2.17
191 192 3.076621 GGAGGGGTTTTCGACGTTAAAT 58.923 45.455 0.00 0.00 0.00 1.40
192 193 2.158842 TGGAGGGGTTTTCGACGTTAAA 60.159 45.455 0.00 0.00 0.00 1.52
193 194 1.415659 TGGAGGGGTTTTCGACGTTAA 59.584 47.619 0.00 0.00 0.00 2.01
194 195 1.047002 TGGAGGGGTTTTCGACGTTA 58.953 50.000 0.00 0.00 0.00 3.18
195 196 0.180878 TTGGAGGGGTTTTCGACGTT 59.819 50.000 0.00 0.00 0.00 3.99
196 197 0.533531 GTTGGAGGGGTTTTCGACGT 60.534 55.000 0.00 0.00 0.00 4.34
197 198 0.533308 TGTTGGAGGGGTTTTCGACG 60.533 55.000 0.00 0.00 0.00 5.12
198 199 1.539827 CATGTTGGAGGGGTTTTCGAC 59.460 52.381 0.00 0.00 0.00 4.20
199 200 1.422024 TCATGTTGGAGGGGTTTTCGA 59.578 47.619 0.00 0.00 0.00 3.71
200 201 1.904287 TCATGTTGGAGGGGTTTTCG 58.096 50.000 0.00 0.00 0.00 3.46
201 202 2.562738 CCTTCATGTTGGAGGGGTTTTC 59.437 50.000 0.00 0.00 30.78 2.29
202 203 2.608623 CCTTCATGTTGGAGGGGTTTT 58.391 47.619 0.00 0.00 30.78 2.43
203 204 1.203174 CCCTTCATGTTGGAGGGGTTT 60.203 52.381 12.49 0.00 46.36 3.27
204 205 0.409484 CCCTTCATGTTGGAGGGGTT 59.591 55.000 12.49 0.00 46.36 4.11
205 206 2.087248 CCCTTCATGTTGGAGGGGT 58.913 57.895 12.49 0.00 46.36 4.95
207 208 1.307647 CCCCCTTCATGTTGGAGGG 59.692 63.158 13.27 13.27 39.44 4.30
223 224 4.489771 CTGATGCCCGTGGTCCCC 62.490 72.222 0.00 0.00 0.00 4.81
224 225 3.682292 GACTGATGCCCGTGGTCCC 62.682 68.421 0.00 0.00 0.00 4.46
225 226 2.125106 GACTGATGCCCGTGGTCC 60.125 66.667 0.00 0.00 0.00 4.46
226 227 1.448540 CTGACTGATGCCCGTGGTC 60.449 63.158 0.00 0.00 0.00 4.02
227 228 2.665000 CTGACTGATGCCCGTGGT 59.335 61.111 0.00 0.00 0.00 4.16
228 229 2.821366 GCTGACTGATGCCCGTGG 60.821 66.667 0.00 0.00 0.00 4.94
229 230 1.236616 TTTGCTGACTGATGCCCGTG 61.237 55.000 0.00 0.00 0.00 4.94
230 231 0.322816 ATTTGCTGACTGATGCCCGT 60.323 50.000 0.00 0.00 0.00 5.28
231 232 0.379669 GATTTGCTGACTGATGCCCG 59.620 55.000 0.00 0.00 0.00 6.13
232 233 1.674962 GAGATTTGCTGACTGATGCCC 59.325 52.381 0.00 0.00 0.00 5.36
233 234 1.674962 GGAGATTTGCTGACTGATGCC 59.325 52.381 0.00 0.00 0.00 4.40
234 235 2.362736 TGGAGATTTGCTGACTGATGC 58.637 47.619 0.00 0.00 0.00 3.91
235 236 3.315470 CCATGGAGATTTGCTGACTGATG 59.685 47.826 5.56 0.00 0.00 3.07
236 237 3.552875 CCATGGAGATTTGCTGACTGAT 58.447 45.455 5.56 0.00 0.00 2.90
237 238 2.356432 CCCATGGAGATTTGCTGACTGA 60.356 50.000 15.22 0.00 0.00 3.41
238 239 2.022195 CCCATGGAGATTTGCTGACTG 58.978 52.381 15.22 0.00 0.00 3.51
239 240 1.918262 TCCCATGGAGATTTGCTGACT 59.082 47.619 15.22 0.00 0.00 3.41
240 241 2.425143 TCCCATGGAGATTTGCTGAC 57.575 50.000 15.22 0.00 0.00 3.51
251 252 3.621214 CGATGTTTGTAACCTCCCATGGA 60.621 47.826 15.22 0.00 0.00 3.41
252 253 2.682856 CGATGTTTGTAACCTCCCATGG 59.317 50.000 4.14 4.14 0.00 3.66
253 254 2.682856 CCGATGTTTGTAACCTCCCATG 59.317 50.000 0.00 0.00 0.00 3.66
254 255 2.356741 CCCGATGTTTGTAACCTCCCAT 60.357 50.000 0.00 0.00 0.00 4.00
255 256 1.003812 CCCGATGTTTGTAACCTCCCA 59.996 52.381 0.00 0.00 0.00 4.37
256 257 1.680860 CCCCGATGTTTGTAACCTCCC 60.681 57.143 0.00 0.00 0.00 4.30
257 258 1.279846 TCCCCGATGTTTGTAACCTCC 59.720 52.381 0.00 0.00 0.00 4.30
258 259 2.773993 TCCCCGATGTTTGTAACCTC 57.226 50.000 0.00 0.00 0.00 3.85
259 260 3.732048 AATCCCCGATGTTTGTAACCT 57.268 42.857 0.00 0.00 0.00 3.50
260 261 4.701171 TGTAAATCCCCGATGTTTGTAACC 59.299 41.667 0.00 0.00 0.00 2.85
261 262 5.883503 TGTAAATCCCCGATGTTTGTAAC 57.116 39.130 0.00 0.00 0.00 2.50
262 263 6.005198 AGTTGTAAATCCCCGATGTTTGTAA 58.995 36.000 0.00 0.00 0.00 2.41
263 264 5.413213 CAGTTGTAAATCCCCGATGTTTGTA 59.587 40.000 0.00 0.00 0.00 2.41
264 265 4.217550 CAGTTGTAAATCCCCGATGTTTGT 59.782 41.667 0.00 0.00 0.00 2.83
265 266 4.457603 TCAGTTGTAAATCCCCGATGTTTG 59.542 41.667 0.00 0.00 0.00 2.93
266 267 4.658063 TCAGTTGTAAATCCCCGATGTTT 58.342 39.130 0.00 0.00 0.00 2.83
267 268 4.295141 TCAGTTGTAAATCCCCGATGTT 57.705 40.909 0.00 0.00 0.00 2.71
268 269 3.992943 TCAGTTGTAAATCCCCGATGT 57.007 42.857 0.00 0.00 0.00 3.06
269 270 4.450976 TGATCAGTTGTAAATCCCCGATG 58.549 43.478 0.00 0.00 0.00 3.84
270 271 4.771114 TGATCAGTTGTAAATCCCCGAT 57.229 40.909 0.00 0.00 0.00 4.18
271 272 4.019681 AGTTGATCAGTTGTAAATCCCCGA 60.020 41.667 0.00 0.00 0.00 5.14
272 273 4.261801 AGTTGATCAGTTGTAAATCCCCG 58.738 43.478 0.00 0.00 0.00 5.73
273 274 5.253330 TGAGTTGATCAGTTGTAAATCCCC 58.747 41.667 0.00 0.00 32.77 4.81
274 275 6.038714 GGATGAGTTGATCAGTTGTAAATCCC 59.961 42.308 0.00 0.00 42.53 3.85
275 276 6.038714 GGGATGAGTTGATCAGTTGTAAATCC 59.961 42.308 0.00 4.24 42.53 3.01
276 277 6.599244 TGGGATGAGTTGATCAGTTGTAAATC 59.401 38.462 0.00 0.00 42.53 2.17
277 278 6.484288 TGGGATGAGTTGATCAGTTGTAAAT 58.516 36.000 0.00 0.00 42.53 1.40
278 279 5.875224 TGGGATGAGTTGATCAGTTGTAAA 58.125 37.500 0.00 0.00 42.53 2.01
279 280 5.497464 TGGGATGAGTTGATCAGTTGTAA 57.503 39.130 0.00 0.00 42.53 2.41
280 281 5.430886 CATGGGATGAGTTGATCAGTTGTA 58.569 41.667 0.00 0.00 42.53 2.41
281 282 4.267536 CATGGGATGAGTTGATCAGTTGT 58.732 43.478 0.00 0.00 42.53 3.32
282 283 3.066342 GCATGGGATGAGTTGATCAGTTG 59.934 47.826 0.00 0.00 42.53 3.16
283 284 3.285484 GCATGGGATGAGTTGATCAGTT 58.715 45.455 0.00 0.00 42.53 3.16
284 285 2.744166 CGCATGGGATGAGTTGATCAGT 60.744 50.000 3.11 0.00 42.53 3.41
285 286 1.871676 CGCATGGGATGAGTTGATCAG 59.128 52.381 3.11 0.00 42.53 2.90
286 287 1.475571 CCGCATGGGATGAGTTGATCA 60.476 52.381 12.02 0.00 43.70 2.92
287 288 1.233019 CCGCATGGGATGAGTTGATC 58.767 55.000 12.02 0.00 38.47 2.92
288 289 0.820891 GCCGCATGGGATGAGTTGAT 60.821 55.000 12.02 0.00 38.47 2.57
289 290 1.451927 GCCGCATGGGATGAGTTGA 60.452 57.895 12.02 0.00 38.47 3.18
290 291 2.827051 CGCCGCATGGGATGAGTTG 61.827 63.158 12.02 0.00 38.47 3.16
291 292 2.514592 CGCCGCATGGGATGAGTT 60.515 61.111 12.02 0.00 38.47 3.01
292 293 4.552365 CCGCCGCATGGGATGAGT 62.552 66.667 12.02 0.00 38.47 3.41
296 297 3.872603 TAAGCCGCCGCATGGGAT 61.873 61.111 12.02 0.00 38.47 3.85
297 298 4.849310 GTAAGCCGCCGCATGGGA 62.849 66.667 12.02 0.00 38.47 4.37
299 300 2.597117 CTTTGTAAGCCGCCGCATGG 62.597 60.000 0.00 0.00 37.52 3.66
300 301 1.226379 CTTTGTAAGCCGCCGCATG 60.226 57.895 0.00 0.00 37.52 4.06
301 302 0.958382 TTCTTTGTAAGCCGCCGCAT 60.958 50.000 0.00 0.00 37.52 4.73
302 303 0.958382 ATTCTTTGTAAGCCGCCGCA 60.958 50.000 0.00 0.00 37.52 5.69
303 304 1.011333 TATTCTTTGTAAGCCGCCGC 58.989 50.000 0.00 0.00 0.00 6.53
304 305 6.903883 ATATATATTCTTTGTAAGCCGCCG 57.096 37.500 0.00 0.00 0.00 6.46
328 329 9.905713 AATATTGTTCTAGGTCACATGTGTTAT 57.094 29.630 24.63 13.82 0.00 1.89
329 330 9.161629 CAATATTGTTCTAGGTCACATGTGTTA 57.838 33.333 24.63 14.44 0.00 2.41
330 331 7.882791 TCAATATTGTTCTAGGTCACATGTGTT 59.117 33.333 24.63 14.10 0.00 3.32
331 332 7.394016 TCAATATTGTTCTAGGTCACATGTGT 58.606 34.615 24.63 9.13 0.00 3.72
332 333 7.848223 TCAATATTGTTCTAGGTCACATGTG 57.152 36.000 20.18 20.18 0.00 3.21
333 334 7.439356 CGATCAATATTGTTCTAGGTCACATGT 59.561 37.037 19.43 0.00 0.00 3.21
334 335 7.095481 CCGATCAATATTGTTCTAGGTCACATG 60.095 40.741 19.43 0.00 0.00 3.21
335 336 6.931281 CCGATCAATATTGTTCTAGGTCACAT 59.069 38.462 19.43 2.28 0.00 3.21
336 337 6.280643 CCGATCAATATTGTTCTAGGTCACA 58.719 40.000 19.43 0.00 0.00 3.58
337 338 5.177696 GCCGATCAATATTGTTCTAGGTCAC 59.822 44.000 19.43 4.11 0.00 3.67
338 339 5.297547 GCCGATCAATATTGTTCTAGGTCA 58.702 41.667 19.43 0.00 0.00 4.02
339 340 4.386049 CGCCGATCAATATTGTTCTAGGTC 59.614 45.833 19.43 11.60 0.00 3.85
340 341 4.038763 TCGCCGATCAATATTGTTCTAGGT 59.961 41.667 19.43 0.00 0.00 3.08
341 342 4.556233 TCGCCGATCAATATTGTTCTAGG 58.444 43.478 19.43 15.85 0.00 3.02
342 343 5.062683 CCATCGCCGATCAATATTGTTCTAG 59.937 44.000 19.43 13.55 0.00 2.43
343 344 4.929211 CCATCGCCGATCAATATTGTTCTA 59.071 41.667 19.43 1.75 0.00 2.10
344 345 3.748048 CCATCGCCGATCAATATTGTTCT 59.252 43.478 19.43 6.37 0.00 3.01
345 346 3.120199 CCCATCGCCGATCAATATTGTTC 60.120 47.826 14.97 14.52 0.00 3.18
346 347 2.813754 CCCATCGCCGATCAATATTGTT 59.186 45.455 14.97 7.03 0.00 2.83
347 348 2.426522 CCCATCGCCGATCAATATTGT 58.573 47.619 14.97 3.05 0.00 2.71
348 349 1.131126 GCCCATCGCCGATCAATATTG 59.869 52.381 9.29 9.29 0.00 1.90
349 350 1.453155 GCCCATCGCCGATCAATATT 58.547 50.000 0.00 0.00 0.00 1.28
350 351 3.159298 GCCCATCGCCGATCAATAT 57.841 52.632 0.00 0.00 0.00 1.28
351 352 4.693532 GCCCATCGCCGATCAATA 57.306 55.556 0.00 0.00 0.00 1.90
360 361 4.899239 CGGAGTGAGGCCCATCGC 62.899 72.222 0.00 0.00 0.00 4.58
361 362 4.899239 GCGGAGTGAGGCCCATCG 62.899 72.222 0.00 4.87 0.00 3.84
362 363 2.093537 CTAGCGGAGTGAGGCCCATC 62.094 65.000 0.00 0.00 0.00 3.51
363 364 2.041922 TAGCGGAGTGAGGCCCAT 60.042 61.111 0.00 0.00 0.00 4.00
364 365 2.759973 CTAGCGGAGTGAGGCCCA 60.760 66.667 0.00 0.00 0.00 5.36
365 366 4.228567 GCTAGCGGAGTGAGGCCC 62.229 72.222 0.00 0.00 0.00 5.80
366 367 3.145422 GAGCTAGCGGAGTGAGGCC 62.145 68.421 9.55 0.00 0.00 5.19
367 368 2.415426 GAGCTAGCGGAGTGAGGC 59.585 66.667 9.55 0.00 0.00 4.70
368 369 2.054140 GACGAGCTAGCGGAGTGAGG 62.054 65.000 9.55 0.00 35.12 3.86
369 370 1.353804 GACGAGCTAGCGGAGTGAG 59.646 63.158 9.55 0.00 35.12 3.51
370 371 1.369839 CTGACGAGCTAGCGGAGTGA 61.370 60.000 9.55 4.26 35.12 3.41
371 372 1.063327 CTGACGAGCTAGCGGAGTG 59.937 63.158 9.55 1.16 35.12 3.51
372 373 0.677098 TTCTGACGAGCTAGCGGAGT 60.677 55.000 9.55 10.69 35.12 3.85
373 374 0.028770 CTTCTGACGAGCTAGCGGAG 59.971 60.000 9.55 7.32 35.12 4.63
374 375 0.677098 ACTTCTGACGAGCTAGCGGA 60.677 55.000 9.55 0.00 35.12 5.54
375 376 0.171455 AACTTCTGACGAGCTAGCGG 59.829 55.000 9.55 8.21 35.12 5.52
376 377 2.826979 TAACTTCTGACGAGCTAGCG 57.173 50.000 9.55 0.00 37.29 4.26
377 378 4.487019 AGTTTAACTTCTGACGAGCTAGC 58.513 43.478 6.62 6.62 0.00 3.42
378 379 6.864165 AGAAAGTTTAACTTCTGACGAGCTAG 59.136 38.462 10.98 0.00 37.47 3.42
379 380 6.746120 AGAAAGTTTAACTTCTGACGAGCTA 58.254 36.000 10.98 0.00 37.47 3.32
380 381 5.602628 AGAAAGTTTAACTTCTGACGAGCT 58.397 37.500 10.98 0.00 37.47 4.09
381 382 5.692654 AGAGAAAGTTTAACTTCTGACGAGC 59.307 40.000 10.98 0.00 37.47 5.03
382 383 7.701809 AAGAGAAAGTTTAACTTCTGACGAG 57.298 36.000 10.98 0.00 37.47 4.18
383 384 9.760077 ATAAAGAGAAAGTTTAACTTCTGACGA 57.240 29.630 10.98 0.00 37.47 4.20
411 412 9.039870 GGTGTTGTGTTATGATTCAAATTCAAA 57.960 29.630 0.00 0.00 0.00 2.69
412 413 8.200120 TGGTGTTGTGTTATGATTCAAATTCAA 58.800 29.630 0.00 0.00 0.00 2.69
413 414 7.720442 TGGTGTTGTGTTATGATTCAAATTCA 58.280 30.769 0.00 0.00 0.00 2.57
414 415 7.329226 CCTGGTGTTGTGTTATGATTCAAATTC 59.671 37.037 0.00 0.00 0.00 2.17
415 416 7.015098 TCCTGGTGTTGTGTTATGATTCAAATT 59.985 33.333 0.00 0.00 0.00 1.82
416 417 6.493115 TCCTGGTGTTGTGTTATGATTCAAAT 59.507 34.615 0.00 0.00 0.00 2.32
417 418 5.830457 TCCTGGTGTTGTGTTATGATTCAAA 59.170 36.000 0.00 0.00 0.00 2.69
418 419 5.380900 TCCTGGTGTTGTGTTATGATTCAA 58.619 37.500 0.00 0.00 0.00 2.69
419 420 4.979335 TCCTGGTGTTGTGTTATGATTCA 58.021 39.130 0.00 0.00 0.00 2.57
420 421 6.515272 AATCCTGGTGTTGTGTTATGATTC 57.485 37.500 0.00 0.00 0.00 2.52
421 422 7.402054 TCTAATCCTGGTGTTGTGTTATGATT 58.598 34.615 0.00 0.00 0.00 2.57
422 423 6.957631 TCTAATCCTGGTGTTGTGTTATGAT 58.042 36.000 0.00 0.00 0.00 2.45
423 424 6.367374 TCTAATCCTGGTGTTGTGTTATGA 57.633 37.500 0.00 0.00 0.00 2.15
424 425 6.403636 GCTTCTAATCCTGGTGTTGTGTTATG 60.404 42.308 0.00 0.00 0.00 1.90
425 426 5.648092 GCTTCTAATCCTGGTGTTGTGTTAT 59.352 40.000 0.00 0.00 0.00 1.89
426 427 5.001232 GCTTCTAATCCTGGTGTTGTGTTA 58.999 41.667 0.00 0.00 0.00 2.41
427 428 3.821033 GCTTCTAATCCTGGTGTTGTGTT 59.179 43.478 0.00 0.00 0.00 3.32
428 429 3.412386 GCTTCTAATCCTGGTGTTGTGT 58.588 45.455 0.00 0.00 0.00 3.72
429 430 2.749621 GGCTTCTAATCCTGGTGTTGTG 59.250 50.000 0.00 0.00 0.00 3.33
430 431 2.644798 AGGCTTCTAATCCTGGTGTTGT 59.355 45.455 0.00 0.00 0.00 3.32
431 432 3.356529 AGGCTTCTAATCCTGGTGTTG 57.643 47.619 0.00 0.00 0.00 3.33
432 433 4.388577 AAAGGCTTCTAATCCTGGTGTT 57.611 40.909 0.00 0.00 32.00 3.32
433 434 4.388577 AAAAGGCTTCTAATCCTGGTGT 57.611 40.909 0.00 0.00 32.00 4.16
434 435 6.603201 TCAATAAAAGGCTTCTAATCCTGGTG 59.397 38.462 0.00 0.00 32.00 4.17
435 436 6.731467 TCAATAAAAGGCTTCTAATCCTGGT 58.269 36.000 0.00 0.00 32.00 4.00
436 437 7.308229 CGATCAATAAAAGGCTTCTAATCCTGG 60.308 40.741 0.00 0.00 32.00 4.45
437 438 7.308229 CCGATCAATAAAAGGCTTCTAATCCTG 60.308 40.741 0.00 0.00 32.00 3.86
438 439 6.712547 CCGATCAATAAAAGGCTTCTAATCCT 59.287 38.462 0.00 0.00 0.00 3.24
439 440 6.568653 GCCGATCAATAAAAGGCTTCTAATCC 60.569 42.308 0.00 0.00 44.06 3.01
440 441 6.374578 GCCGATCAATAAAAGGCTTCTAATC 58.625 40.000 0.00 0.00 44.06 1.75
441 442 6.319141 GCCGATCAATAAAAGGCTTCTAAT 57.681 37.500 0.00 0.00 44.06 1.73
442 443 5.751243 GCCGATCAATAAAAGGCTTCTAA 57.249 39.130 0.00 0.00 44.06 2.10
448 449 4.045636 ACATTGCCGATCAATAAAAGGC 57.954 40.909 0.00 0.00 43.21 4.35
449 450 8.472683 TTTTAACATTGCCGATCAATAAAAGG 57.527 30.769 0.00 0.00 43.21 3.11
452 453 9.868277 AGATTTTTAACATTGCCGATCAATAAA 57.132 25.926 0.00 1.91 43.21 1.40
453 454 9.299963 CAGATTTTTAACATTGCCGATCAATAA 57.700 29.630 0.00 0.00 43.21 1.40
454 455 8.681806 TCAGATTTTTAACATTGCCGATCAATA 58.318 29.630 0.00 0.00 43.21 1.90
455 456 7.489113 GTCAGATTTTTAACATTGCCGATCAAT 59.511 33.333 0.00 0.00 45.82 2.57
456 457 6.806249 GTCAGATTTTTAACATTGCCGATCAA 59.194 34.615 0.00 0.00 39.32 2.57
457 458 6.321717 GTCAGATTTTTAACATTGCCGATCA 58.678 36.000 0.00 0.00 0.00 2.92
458 459 5.452302 CGTCAGATTTTTAACATTGCCGATC 59.548 40.000 0.00 0.00 0.00 3.69
459 460 5.106317 ACGTCAGATTTTTAACATTGCCGAT 60.106 36.000 0.00 0.00 0.00 4.18
460 461 4.214545 ACGTCAGATTTTTAACATTGCCGA 59.785 37.500 0.00 0.00 0.00 5.54
461 462 4.472286 ACGTCAGATTTTTAACATTGCCG 58.528 39.130 0.00 0.00 0.00 5.69
462 463 5.457140 TGACGTCAGATTTTTAACATTGCC 58.543 37.500 15.76 0.00 0.00 4.52
463 464 6.602564 CTGACGTCAGATTTTTAACATTGC 57.397 37.500 36.73 0.00 46.59 3.56
477 478 6.169419 TGAGCATTAAAAATCTGACGTCAG 57.831 37.500 34.76 34.76 45.08 3.51
478 479 6.552859 TTGAGCATTAAAAATCTGACGTCA 57.447 33.333 18.88 18.88 0.00 4.35
479 480 7.851822 TTTTGAGCATTAAAAATCTGACGTC 57.148 32.000 9.11 9.11 0.00 4.34
480 481 8.452989 GATTTTGAGCATTAAAAATCTGACGT 57.547 30.769 11.66 0.00 44.13 4.34
486 487 8.673626 TCGTCAGATTTTGAGCATTAAAAATC 57.326 30.769 11.18 11.18 46.23 2.17
487 488 9.294030 GATCGTCAGATTTTGAGCATTAAAAAT 57.706 29.630 0.00 0.00 38.39 1.82
488 489 8.296000 TGATCGTCAGATTTTGAGCATTAAAAA 58.704 29.630 0.00 0.00 37.19 1.94
489 490 7.815641 TGATCGTCAGATTTTGAGCATTAAAA 58.184 30.769 0.00 0.00 37.19 1.52
490 491 7.376435 TGATCGTCAGATTTTGAGCATTAAA 57.624 32.000 0.00 0.00 37.19 1.52
491 492 6.983474 TGATCGTCAGATTTTGAGCATTAA 57.017 33.333 0.00 0.00 37.19 1.40
504 505 4.435917 CGCATGACAAATTTGATCGTCAGA 60.436 41.667 24.64 3.38 41.36 3.27
513 514 5.287170 TCTCTTCTCGCATGACAAATTTG 57.713 39.130 16.67 16.67 0.00 2.32
529 530 7.533426 ACACAAGCATGACAATTAATCTCTTC 58.467 34.615 0.00 0.00 0.00 2.87
537 538 8.978874 ATCCTTATACACAAGCATGACAATTA 57.021 30.769 0.00 0.00 0.00 1.40
576 577 5.235305 ACTGTATAAGGCAATTTTCGCTG 57.765 39.130 0.00 0.00 0.00 5.18
606 607 9.518906 GCATGATGTTTTTCCTTTGAAAATTTT 57.481 25.926 2.28 2.28 46.76 1.82
607 608 8.905850 AGCATGATGTTTTTCCTTTGAAAATTT 58.094 25.926 0.00 0.00 46.76 1.82
608 609 8.454570 AGCATGATGTTTTTCCTTTGAAAATT 57.545 26.923 0.00 0.00 46.76 1.82
609 610 8.992073 GTAGCATGATGTTTTTCCTTTGAAAAT 58.008 29.630 0.00 0.00 46.76 1.82
610 611 7.984050 TGTAGCATGATGTTTTTCCTTTGAAAA 59.016 29.630 0.00 0.00 46.11 2.29
611 612 7.495901 TGTAGCATGATGTTTTTCCTTTGAAA 58.504 30.769 0.00 0.00 38.69 2.69
612 613 7.048629 TGTAGCATGATGTTTTTCCTTTGAA 57.951 32.000 0.00 0.00 0.00 2.69
613 614 6.647334 TGTAGCATGATGTTTTTCCTTTGA 57.353 33.333 0.00 0.00 0.00 2.69
614 615 6.129115 CGTTGTAGCATGATGTTTTTCCTTTG 60.129 38.462 0.00 0.00 0.00 2.77
615 616 5.920273 CGTTGTAGCATGATGTTTTTCCTTT 59.080 36.000 0.00 0.00 0.00 3.11
618 619 5.041951 TCGTTGTAGCATGATGTTTTTCC 57.958 39.130 0.00 0.00 0.00 3.13
625 626 7.408910 TGACAATTAATCGTTGTAGCATGATG 58.591 34.615 0.00 0.00 39.72 3.07
628 629 8.334632 TGTATGACAATTAATCGTTGTAGCATG 58.665 33.333 0.00 0.00 39.72 4.06
642 643 6.091718 TCCCGATCGAATGTATGACAATTA 57.908 37.500 18.66 0.00 0.00 1.40
649 650 3.592898 TGGATCCCGATCGAATGTATG 57.407 47.619 18.66 0.00 38.69 2.39
650 651 3.614150 CGTTGGATCCCGATCGAATGTAT 60.614 47.826 18.66 1.99 37.74 2.29
651 652 2.287970 CGTTGGATCCCGATCGAATGTA 60.288 50.000 18.66 0.00 37.74 2.29
652 653 1.538204 CGTTGGATCCCGATCGAATGT 60.538 52.381 18.66 0.00 37.74 2.71
653 654 1.139989 CGTTGGATCCCGATCGAATG 58.860 55.000 18.66 4.74 37.74 2.67
654 655 0.750850 ACGTTGGATCCCGATCGAAT 59.249 50.000 18.66 9.76 37.74 3.34
656 657 0.664761 GTACGTTGGATCCCGATCGA 59.335 55.000 18.66 0.00 38.69 3.59
657 658 0.318445 GGTACGTTGGATCCCGATCG 60.318 60.000 16.14 8.51 38.69 3.69
679 680 3.876274 ACATCTAATGTCTGACGTGCT 57.124 42.857 2.78 0.00 39.92 4.40
682 683 8.775527 CAGTATAGTACATCTAATGTCTGACGT 58.224 37.037 2.98 0.00 43.67 4.34
767 768 2.224450 ACGTCTGGTAGAAACCTTTGGG 60.224 50.000 0.00 0.00 46.91 4.12
817 818 3.985019 TCTATAGGTTTTCGGCCACAA 57.015 42.857 2.24 0.00 0.00 3.33
834 835 7.223584 TCTTTTCCAAGTGATTGTGTCATCTA 58.776 34.615 0.00 0.00 39.48 1.98
1695 1696 1.065109 CGTCATGTACGCCATCGGA 59.935 57.895 5.07 0.00 46.10 4.55
1870 1915 3.491104 CCTCCTTACTCGATGTTAGTGCC 60.491 52.174 0.00 0.00 0.00 5.01
1876 1921 3.260884 TGCTTTCCTCCTTACTCGATGTT 59.739 43.478 0.00 0.00 0.00 2.71
1888 1933 3.423154 CGTGGCGTGCTTTCCTCC 61.423 66.667 0.00 0.00 0.00 4.30
2276 2322 2.751259 CTGCTTCCTGGTACGTACAGTA 59.249 50.000 26.02 13.12 34.16 2.74
2278 2324 1.816835 TCTGCTTCCTGGTACGTACAG 59.183 52.381 26.02 19.44 35.74 2.74
2465 2538 1.668294 CTGCGAGGACACCAAGAGT 59.332 57.895 0.00 0.00 0.00 3.24
2466 2539 1.079543 CCTGCGAGGACACCAAGAG 60.080 63.158 0.00 0.00 37.67 2.85
2467 2540 3.059982 CCTGCGAGGACACCAAGA 58.940 61.111 0.00 0.00 37.67 3.02
2468 2541 2.743928 GCCTGCGAGGACACCAAG 60.744 66.667 6.40 0.00 37.67 3.61
2469 2542 4.680237 CGCCTGCGAGGACACCAA 62.680 66.667 5.43 0.00 42.83 3.67
2573 2667 4.283678 CACAACGCGAATTAAAGTGGAAA 58.716 39.130 15.93 0.00 0.00 3.13
2604 3097 7.381766 TCAAAATGACATGACAGTAGGATTG 57.618 36.000 0.00 0.51 0.00 2.67
2607 3100 6.313658 CGAATCAAAATGACATGACAGTAGGA 59.686 38.462 0.00 0.54 0.00 2.94
2628 3121 3.313526 GCTATGTTCAATCCTGTGCGAAT 59.686 43.478 0.00 0.00 0.00 3.34
2629 3122 2.677836 GCTATGTTCAATCCTGTGCGAA 59.322 45.455 0.00 0.00 0.00 4.70
2645 3138 8.253113 AGACAATATTTTTGGTGGAAAGCTATG 58.747 33.333 0.00 0.00 0.00 2.23
2648 3141 6.267471 TCAGACAATATTTTTGGTGGAAAGCT 59.733 34.615 0.00 0.00 0.00 3.74
2649 3142 6.454795 TCAGACAATATTTTTGGTGGAAAGC 58.545 36.000 0.00 0.00 0.00 3.51
2650 3143 8.928733 CAATCAGACAATATTTTTGGTGGAAAG 58.071 33.333 0.00 0.00 0.00 2.62
2651 3144 7.877097 CCAATCAGACAATATTTTTGGTGGAAA 59.123 33.333 0.00 0.00 0.00 3.13
2652 3145 7.016072 ACCAATCAGACAATATTTTTGGTGGAA 59.984 33.333 3.79 0.00 42.65 3.53
2653 3146 6.496565 ACCAATCAGACAATATTTTTGGTGGA 59.503 34.615 3.79 0.00 42.65 4.02
2654 3147 6.700352 ACCAATCAGACAATATTTTTGGTGG 58.300 36.000 3.79 9.90 42.65 4.61
2655 3148 7.656948 ACAACCAATCAGACAATATTTTTGGTG 59.343 33.333 5.29 3.47 43.26 4.17
2656 3149 7.734942 ACAACCAATCAGACAATATTTTTGGT 58.265 30.769 0.00 0.00 45.31 3.67
2673 3169 7.690256 AGTTCTTCCAATAGTCTACAACCAAT 58.310 34.615 0.00 0.00 0.00 3.16
2708 3204 8.628630 AATTATTTGTTGGTTTAAATGTGGGG 57.371 30.769 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.