Multiple sequence alignment - TraesCS4D01G061700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G061700 chr4D 100.000 2541 0 0 807 3347 37494256 37491716 0.000000e+00 4693.0
1 TraesCS4D01G061700 chr4D 100.000 423 0 0 1 423 37495062 37494640 0.000000e+00 782.0
2 TraesCS4D01G061700 chr4D 84.000 450 51 17 1298 1731 37266287 37266731 2.400000e-111 412.0
3 TraesCS4D01G061700 chr4D 78.462 260 40 11 2595 2843 488677789 488677535 4.470000e-34 156.0
4 TraesCS4D01G061700 chr4B 91.246 674 34 8 1745 2410 54367668 54368324 0.000000e+00 894.0
5 TraesCS4D01G061700 chr4B 87.282 747 82 9 2594 3335 54640128 54640866 0.000000e+00 841.0
6 TraesCS4D01G061700 chr4B 85.965 627 68 14 2736 3347 54485222 54485843 0.000000e+00 652.0
7 TraesCS4D01G061700 chr4B 91.799 378 28 2 1382 1759 54367251 54367625 1.060000e-144 523.0
8 TraesCS4D01G061700 chr4B 86.433 457 57 4 1845 2297 54364738 54364283 2.320000e-136 496.0
9 TraesCS4D01G061700 chr4B 77.473 839 142 31 928 1731 54365679 54364853 3.040000e-125 459.0
10 TraesCS4D01G061700 chr4B 83.607 366 32 17 2408 2751 54484838 54485197 5.390000e-83 318.0
11 TraesCS4D01G061700 chr4B 92.188 192 10 2 808 999 54366407 54366593 1.980000e-67 267.0
12 TraesCS4D01G061700 chr4B 90.132 152 8 4 988 1139 54366617 54366761 1.230000e-44 191.0
13 TraesCS4D01G061700 chr4B 88.571 140 16 0 2299 2438 54639788 54639927 1.600000e-38 171.0
14 TraesCS4D01G061700 chr4B 94.393 107 6 0 1148 1254 54366879 54366985 7.430000e-37 165.0
15 TraesCS4D01G061700 chr4A 83.519 449 59 8 1844 2292 564955299 564954866 4.020000e-109 405.0
16 TraesCS4D01G061700 chr4A 85.039 381 45 11 1355 1731 564955935 564955563 8.770000e-101 377.0
17 TraesCS4D01G061700 chr6A 81.081 259 39 8 2595 2844 191845353 191845096 7.320000e-47 198.0
18 TraesCS4D01G061700 chr6A 77.481 262 43 13 2595 2844 562477612 562477355 3.480000e-30 143.0
19 TraesCS4D01G061700 chr5A 80.534 262 39 8 2594 2845 41430449 41430190 1.230000e-44 191.0
20 TraesCS4D01G061700 chr5A 80.000 260 38 10 2596 2844 598254199 598253943 2.650000e-41 180.0
21 TraesCS4D01G061700 chr5A 81.223 229 35 3 2619 2845 55094078 55094300 9.540000e-41 178.0
22 TraesCS4D01G061700 chr5A 83.246 191 29 2 2656 2844 604233150 604233339 4.440000e-39 172.0
23 TraesCS4D01G061700 chr3D 80.077 261 40 6 2595 2845 463695271 463695013 2.050000e-42 183.0
24 TraesCS4D01G061700 chr3D 79.151 259 44 5 2595 2844 19019597 19019854 1.600000e-38 171.0
25 TraesCS4D01G061700 chr7A 79.693 261 39 9 2595 2844 115742405 115742148 3.430000e-40 176.0
26 TraesCS4D01G061700 chr7A 79.151 259 44 7 2595 2844 238816363 238816106 1.600000e-38 171.0
27 TraesCS4D01G061700 chr1D 79.693 261 39 11 2595 2844 443529547 443529290 3.430000e-40 176.0
28 TraesCS4D01G061700 chr3A 83.871 186 27 2 2662 2845 20208051 20208235 1.230000e-39 174.0
29 TraesCS4D01G061700 chr2B 83.784 74 8 4 3096 3168 798847879 798847809 2.160000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G061700 chr4D 37491716 37495062 3346 True 2737.5 4693 100.0000 1 3347 2 chr4D.!!$R2 3346
1 TraesCS4D01G061700 chr4B 54639788 54640866 1078 False 506.0 841 87.9265 2299 3335 2 chr4B.!!$F3 1036
2 TraesCS4D01G061700 chr4B 54484838 54485843 1005 False 485.0 652 84.7860 2408 3347 2 chr4B.!!$F2 939
3 TraesCS4D01G061700 chr4B 54364283 54365679 1396 True 477.5 496 81.9530 928 2297 2 chr4B.!!$R1 1369
4 TraesCS4D01G061700 chr4B 54366407 54368324 1917 False 408.0 894 91.9516 808 2410 5 chr4B.!!$F1 1602
5 TraesCS4D01G061700 chr4A 564954866 564955935 1069 True 391.0 405 84.2790 1355 2292 2 chr4A.!!$R1 937

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.099613 CGGAGAGATGTGACCAGACG 59.900 60.0 0.0 0.0 0.0 4.18 F
1104 1143 0.109132 CATTGCTCCTTTTCGTGGCC 60.109 55.0 0.0 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1695 2043 0.176680 CTGTAGCCGTGCTTGAGGAT 59.823 55.0 3.71 0.0 40.44 3.24 R
2982 3612 0.107066 TCCACCACTACCGATCGCTA 60.107 55.0 10.32 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.690857 GGTTACTAGAGCTGGTATTTAAGCG 59.309 44.000 0.00 0.00 44.34 4.68
25 26 4.323553 ACTAGAGCTGGTATTTAAGCGG 57.676 45.455 0.00 0.00 44.34 5.52
29 30 1.275657 CTGGTATTTAAGCGGCGCG 59.724 57.895 27.59 0.00 0.00 6.86
64 65 3.508840 CCGCGCCTTGTCCCAATC 61.509 66.667 0.00 0.00 0.00 2.67
65 66 2.436646 CGCGCCTTGTCCCAATCT 60.437 61.111 0.00 0.00 0.00 2.40
66 67 2.464459 CGCGCCTTGTCCCAATCTC 61.464 63.158 0.00 0.00 0.00 2.75
67 68 2.115291 GCGCCTTGTCCCAATCTCC 61.115 63.158 0.00 0.00 0.00 3.71
68 69 1.815421 CGCCTTGTCCCAATCTCCG 60.815 63.158 0.00 0.00 0.00 4.63
69 70 2.115291 GCCTTGTCCCAATCTCCGC 61.115 63.158 0.00 0.00 0.00 5.54
70 71 1.815421 CCTTGTCCCAATCTCCGCG 60.815 63.158 0.00 0.00 0.00 6.46
71 72 2.435938 TTGTCCCAATCTCCGCGC 60.436 61.111 0.00 0.00 0.00 6.86
72 73 3.969250 TTGTCCCAATCTCCGCGCC 62.969 63.158 0.00 0.00 0.00 6.53
73 74 4.467084 GTCCCAATCTCCGCGCCA 62.467 66.667 0.00 0.00 0.00 5.69
74 75 3.711814 TCCCAATCTCCGCGCCAA 61.712 61.111 0.00 0.00 0.00 4.52
75 76 2.516930 CCCAATCTCCGCGCCAAT 60.517 61.111 0.00 0.00 0.00 3.16
76 77 2.120909 CCCAATCTCCGCGCCAATT 61.121 57.895 0.00 0.00 0.00 2.32
77 78 1.356624 CCAATCTCCGCGCCAATTC 59.643 57.895 0.00 0.00 0.00 2.17
78 79 1.375853 CCAATCTCCGCGCCAATTCA 61.376 55.000 0.00 0.00 0.00 2.57
79 80 0.451383 CAATCTCCGCGCCAATTCAA 59.549 50.000 0.00 0.00 0.00 2.69
80 81 1.066002 CAATCTCCGCGCCAATTCAAT 59.934 47.619 0.00 0.00 0.00 2.57
81 82 0.664761 ATCTCCGCGCCAATTCAATG 59.335 50.000 0.00 0.00 0.00 2.82
82 83 1.587088 CTCCGCGCCAATTCAATGC 60.587 57.895 0.00 0.00 0.00 3.56
83 84 2.583045 CCGCGCCAATTCAATGCC 60.583 61.111 0.00 0.00 0.00 4.40
84 85 2.950710 CGCGCCAATTCAATGCCG 60.951 61.111 0.00 0.00 0.00 5.69
85 86 2.583045 GCGCCAATTCAATGCCGG 60.583 61.111 0.00 0.00 0.00 6.13
86 87 3.062500 GCGCCAATTCAATGCCGGA 62.063 57.895 5.05 0.00 0.00 5.14
87 88 1.064621 CGCCAATTCAATGCCGGAG 59.935 57.895 5.05 0.00 0.00 4.63
88 89 1.375853 CGCCAATTCAATGCCGGAGA 61.376 55.000 5.05 0.00 0.00 3.71
89 90 0.383231 GCCAATTCAATGCCGGAGAG 59.617 55.000 5.05 0.00 0.00 3.20
90 91 2.018644 GCCAATTCAATGCCGGAGAGA 61.019 52.381 5.05 0.00 0.00 3.10
91 92 2.579873 CCAATTCAATGCCGGAGAGAT 58.420 47.619 5.05 0.00 0.00 2.75
92 93 2.292569 CCAATTCAATGCCGGAGAGATG 59.707 50.000 5.05 0.00 0.00 2.90
93 94 2.947652 CAATTCAATGCCGGAGAGATGT 59.052 45.455 5.05 0.00 0.00 3.06
94 95 2.028420 TTCAATGCCGGAGAGATGTG 57.972 50.000 5.05 0.00 0.00 3.21
95 96 1.194218 TCAATGCCGGAGAGATGTGA 58.806 50.000 5.05 0.00 0.00 3.58
96 97 1.134699 TCAATGCCGGAGAGATGTGAC 60.135 52.381 5.05 0.00 0.00 3.67
97 98 0.179000 AATGCCGGAGAGATGTGACC 59.821 55.000 5.05 0.00 0.00 4.02
98 99 0.977627 ATGCCGGAGAGATGTGACCA 60.978 55.000 5.05 0.00 0.00 4.02
99 100 1.142748 GCCGGAGAGATGTGACCAG 59.857 63.158 5.05 0.00 0.00 4.00
100 101 1.323271 GCCGGAGAGATGTGACCAGA 61.323 60.000 5.05 0.00 0.00 3.86
101 102 0.457851 CCGGAGAGATGTGACCAGAC 59.542 60.000 0.00 0.00 0.00 3.51
102 103 0.099613 CGGAGAGATGTGACCAGACG 59.900 60.000 0.00 0.00 0.00 4.18
103 104 0.457851 GGAGAGATGTGACCAGACGG 59.542 60.000 0.00 0.00 38.77 4.79
104 105 0.457851 GAGAGATGTGACCAGACGGG 59.542 60.000 0.00 0.00 44.81 5.28
105 106 0.972983 AGAGATGTGACCAGACGGGG 60.973 60.000 0.00 0.00 42.91 5.73
128 129 4.667519 GGGACGACTATCTACCACATTT 57.332 45.455 0.00 0.00 0.00 2.32
129 130 5.779529 GGGACGACTATCTACCACATTTA 57.220 43.478 0.00 0.00 0.00 1.40
130 131 5.770417 GGGACGACTATCTACCACATTTAG 58.230 45.833 0.00 0.00 0.00 1.85
131 132 5.533903 GGGACGACTATCTACCACATTTAGA 59.466 44.000 0.00 0.00 0.00 2.10
132 133 6.437094 GGACGACTATCTACCACATTTAGAC 58.563 44.000 0.00 0.00 0.00 2.59
133 134 6.388435 ACGACTATCTACCACATTTAGACC 57.612 41.667 0.00 0.00 0.00 3.85
134 135 5.008415 ACGACTATCTACCACATTTAGACCG 59.992 44.000 0.00 0.00 0.00 4.79
135 136 5.562307 CGACTATCTACCACATTTAGACCGG 60.562 48.000 0.00 0.00 0.00 5.28
136 137 2.973694 TCTACCACATTTAGACCGGC 57.026 50.000 0.00 0.00 0.00 6.13
137 138 2.463752 TCTACCACATTTAGACCGGCT 58.536 47.619 0.00 1.78 0.00 5.52
138 139 2.167693 TCTACCACATTTAGACCGGCTG 59.832 50.000 0.00 0.00 0.00 4.85
139 140 0.676782 ACCACATTTAGACCGGCTGC 60.677 55.000 0.00 0.00 0.00 5.25
140 141 1.376609 CCACATTTAGACCGGCTGCC 61.377 60.000 9.11 9.11 0.00 4.85
141 142 1.077716 ACATTTAGACCGGCTGCCC 60.078 57.895 14.12 0.00 0.00 5.36
151 152 2.435059 GGCTGCCCGTCTGTTCTC 60.435 66.667 7.66 0.00 0.00 2.87
152 153 2.435059 GCTGCCCGTCTGTTCTCC 60.435 66.667 0.00 0.00 0.00 3.71
153 154 2.948720 GCTGCCCGTCTGTTCTCCT 61.949 63.158 0.00 0.00 0.00 3.69
154 155 1.079543 CTGCCCGTCTGTTCTCCTG 60.080 63.158 0.00 0.00 0.00 3.86
155 156 1.821061 CTGCCCGTCTGTTCTCCTGT 61.821 60.000 0.00 0.00 0.00 4.00
156 157 1.079750 GCCCGTCTGTTCTCCTGTC 60.080 63.158 0.00 0.00 0.00 3.51
157 158 1.213013 CCCGTCTGTTCTCCTGTCG 59.787 63.158 0.00 0.00 0.00 4.35
158 159 1.213013 CCGTCTGTTCTCCTGTCGG 59.787 63.158 0.00 0.00 37.36 4.79
159 160 1.444553 CGTCTGTTCTCCTGTCGGC 60.445 63.158 0.00 0.00 0.00 5.54
160 161 1.666011 GTCTGTTCTCCTGTCGGCA 59.334 57.895 0.00 0.00 0.00 5.69
161 162 0.247736 GTCTGTTCTCCTGTCGGCAT 59.752 55.000 0.00 0.00 0.00 4.40
162 163 0.976641 TCTGTTCTCCTGTCGGCATT 59.023 50.000 0.00 0.00 0.00 3.56
163 164 2.094182 GTCTGTTCTCCTGTCGGCATTA 60.094 50.000 0.00 0.00 0.00 1.90
164 165 2.565391 TCTGTTCTCCTGTCGGCATTAA 59.435 45.455 0.00 0.00 0.00 1.40
165 166 3.007506 TCTGTTCTCCTGTCGGCATTAAA 59.992 43.478 0.00 0.00 0.00 1.52
166 167 3.071479 TGTTCTCCTGTCGGCATTAAAC 58.929 45.455 0.00 0.00 0.00 2.01
167 168 3.071479 GTTCTCCTGTCGGCATTAAACA 58.929 45.455 0.00 0.00 0.00 2.83
168 169 3.410631 TCTCCTGTCGGCATTAAACAA 57.589 42.857 0.00 0.00 0.00 2.83
169 170 3.334691 TCTCCTGTCGGCATTAAACAAG 58.665 45.455 0.00 0.00 0.00 3.16
170 171 1.810151 TCCTGTCGGCATTAAACAAGC 59.190 47.619 0.00 0.00 0.00 4.01
171 172 1.812571 CCTGTCGGCATTAAACAAGCT 59.187 47.619 0.00 0.00 0.00 3.74
172 173 2.159517 CCTGTCGGCATTAAACAAGCTC 60.160 50.000 0.00 0.00 0.00 4.09
173 174 1.463056 TGTCGGCATTAAACAAGCTCG 59.537 47.619 0.00 0.00 0.00 5.03
174 175 1.083489 TCGGCATTAAACAAGCTCGG 58.917 50.000 0.00 0.00 0.00 4.63
175 176 0.523335 CGGCATTAAACAAGCTCGGC 60.523 55.000 0.00 0.00 0.00 5.54
176 177 0.523335 GGCATTAAACAAGCTCGGCG 60.523 55.000 0.00 0.00 0.00 6.46
177 178 0.523335 GCATTAAACAAGCTCGGCGG 60.523 55.000 7.21 0.00 0.00 6.13
178 179 0.523335 CATTAAACAAGCTCGGCGGC 60.523 55.000 7.21 9.87 0.00 6.53
179 180 1.977594 ATTAAACAAGCTCGGCGGCG 61.978 55.000 27.15 27.15 37.29 6.46
183 184 4.585526 CAAGCTCGGCGGCGGATA 62.586 66.667 31.73 11.60 37.29 2.59
184 185 3.845259 AAGCTCGGCGGCGGATAA 61.845 61.111 31.73 11.19 37.29 1.75
185 186 3.379865 AAGCTCGGCGGCGGATAAA 62.380 57.895 31.73 10.77 37.29 1.40
186 187 3.637030 GCTCGGCGGCGGATAAAC 61.637 66.667 31.73 10.67 0.00 2.01
187 188 2.965462 CTCGGCGGCGGATAAACC 60.965 66.667 31.73 0.00 0.00 3.27
188 189 4.534141 TCGGCGGCGGATAAACCC 62.534 66.667 31.73 0.00 34.64 4.11
189 190 4.841861 CGGCGGCGGATAAACCCA 62.842 66.667 25.36 0.00 34.64 4.51
190 191 3.206957 GGCGGCGGATAAACCCAC 61.207 66.667 9.78 0.00 34.64 4.61
191 192 3.206957 GCGGCGGATAAACCCACC 61.207 66.667 9.78 0.00 34.64 4.61
192 193 2.515290 CGGCGGATAAACCCACCC 60.515 66.667 0.00 0.00 34.64 4.61
193 194 2.124024 GGCGGATAAACCCACCCC 60.124 66.667 0.00 0.00 34.64 4.95
194 195 2.515290 GCGGATAAACCCACCCCG 60.515 66.667 0.00 0.00 42.74 5.73
195 196 2.191109 CGGATAAACCCACCCCGG 59.809 66.667 0.00 0.00 36.81 5.73
196 197 2.124024 GGATAAACCCACCCCGGC 60.124 66.667 0.00 0.00 0.00 6.13
197 198 2.515290 GATAAACCCACCCCGGCG 60.515 66.667 0.00 0.00 0.00 6.46
198 199 4.807631 ATAAACCCACCCCGGCGC 62.808 66.667 0.00 0.00 0.00 6.53
210 211 4.389576 CGGCGCCTGCACTGAAAC 62.390 66.667 26.68 0.00 45.35 2.78
211 212 3.286751 GGCGCCTGCACTGAAACA 61.287 61.111 22.15 0.00 45.35 2.83
212 213 2.721231 GCGCCTGCACTGAAACAA 59.279 55.556 0.00 0.00 42.15 2.83
213 214 1.658409 GCGCCTGCACTGAAACAAC 60.658 57.895 0.00 0.00 42.15 3.32
214 215 1.008538 CGCCTGCACTGAAACAACC 60.009 57.895 0.00 0.00 0.00 3.77
215 216 1.363807 GCCTGCACTGAAACAACCC 59.636 57.895 0.00 0.00 0.00 4.11
216 217 1.391157 GCCTGCACTGAAACAACCCA 61.391 55.000 0.00 0.00 0.00 4.51
217 218 1.331214 CCTGCACTGAAACAACCCAT 58.669 50.000 0.00 0.00 0.00 4.00
218 219 1.270550 CCTGCACTGAAACAACCCATC 59.729 52.381 0.00 0.00 0.00 3.51
219 220 1.270550 CTGCACTGAAACAACCCATCC 59.729 52.381 0.00 0.00 0.00 3.51
220 221 1.133513 TGCACTGAAACAACCCATCCT 60.134 47.619 0.00 0.00 0.00 3.24
221 222 2.107378 TGCACTGAAACAACCCATCCTA 59.893 45.455 0.00 0.00 0.00 2.94
222 223 3.245229 TGCACTGAAACAACCCATCCTAT 60.245 43.478 0.00 0.00 0.00 2.57
223 224 3.129287 GCACTGAAACAACCCATCCTATG 59.871 47.826 0.00 0.00 0.00 2.23
233 234 0.617413 CCATCCTATGGCCTAGCAGG 59.383 60.000 3.32 5.20 44.70 4.85
242 243 3.154473 CCTAGCAGGCACCCGCTA 61.154 66.667 4.60 4.60 38.60 4.26
243 244 2.511452 CCTAGCAGGCACCCGCTAT 61.511 63.158 5.11 0.00 36.02 2.97
244 245 1.301244 CTAGCAGGCACCCGCTATG 60.301 63.158 5.11 0.00 36.02 2.23
245 246 2.032860 CTAGCAGGCACCCGCTATGT 62.033 60.000 5.11 0.00 36.02 2.29
246 247 0.757561 TAGCAGGCACCCGCTATGTA 60.758 55.000 0.31 0.00 38.60 2.29
247 248 1.071471 GCAGGCACCCGCTATGTAT 59.929 57.895 0.00 0.00 38.60 2.29
248 249 0.320374 GCAGGCACCCGCTATGTATA 59.680 55.000 0.00 0.00 38.60 1.47
249 250 1.939838 GCAGGCACCCGCTATGTATAC 60.940 57.143 0.00 0.00 38.60 1.47
250 251 1.343142 CAGGCACCCGCTATGTATACA 59.657 52.381 8.27 8.27 38.60 2.29
251 252 2.028112 CAGGCACCCGCTATGTATACAT 60.028 50.000 21.57 21.57 38.60 2.29
252 253 2.028112 AGGCACCCGCTATGTATACATG 60.028 50.000 25.48 16.67 38.60 3.21
253 254 2.346803 GCACCCGCTATGTATACATGG 58.653 52.381 25.48 23.40 37.15 3.66
261 262 1.167851 ATGTATACATGGCCATGCGC 58.832 50.000 39.74 27.20 42.39 6.09
262 263 1.227342 TGTATACATGGCCATGCGCG 61.227 55.000 39.74 21.06 42.39 6.86
263 264 1.670730 TATACATGGCCATGCGCGG 60.671 57.895 39.74 20.68 42.39 6.46
271 272 3.349006 CCATGCGCGGCACTATCC 61.349 66.667 8.83 0.00 43.04 2.59
290 291 3.869272 CAGCGCGCCACCTTCATC 61.869 66.667 30.33 0.00 0.00 2.92
291 292 4.393155 AGCGCGCCACCTTCATCA 62.393 61.111 30.33 0.00 0.00 3.07
292 293 3.430862 GCGCGCCACCTTCATCAA 61.431 61.111 23.24 0.00 0.00 2.57
293 294 2.976840 GCGCGCCACCTTCATCAAA 61.977 57.895 23.24 0.00 0.00 2.69
294 295 1.154225 CGCGCCACCTTCATCAAAC 60.154 57.895 0.00 0.00 0.00 2.93
295 296 1.212751 GCGCCACCTTCATCAAACC 59.787 57.895 0.00 0.00 0.00 3.27
296 297 1.501741 CGCCACCTTCATCAAACCG 59.498 57.895 0.00 0.00 0.00 4.44
297 298 1.212751 GCCACCTTCATCAAACCGC 59.787 57.895 0.00 0.00 0.00 5.68
298 299 1.523154 GCCACCTTCATCAAACCGCA 61.523 55.000 0.00 0.00 0.00 5.69
299 300 0.958091 CCACCTTCATCAAACCGCAA 59.042 50.000 0.00 0.00 0.00 4.85
300 301 1.068333 CCACCTTCATCAAACCGCAAG 60.068 52.381 0.00 0.00 0.00 4.01
301 302 0.598065 ACCTTCATCAAACCGCAAGC 59.402 50.000 0.00 0.00 0.00 4.01
302 303 0.883833 CCTTCATCAAACCGCAAGCT 59.116 50.000 0.00 0.00 0.00 3.74
303 304 1.135575 CCTTCATCAAACCGCAAGCTC 60.136 52.381 0.00 0.00 0.00 4.09
304 305 1.808945 CTTCATCAAACCGCAAGCTCT 59.191 47.619 0.00 0.00 0.00 4.09
305 306 2.760634 TCATCAAACCGCAAGCTCTA 57.239 45.000 0.00 0.00 0.00 2.43
306 307 2.621338 TCATCAAACCGCAAGCTCTAG 58.379 47.619 0.00 0.00 0.00 2.43
307 308 2.233676 TCATCAAACCGCAAGCTCTAGA 59.766 45.455 0.00 0.00 0.00 2.43
308 309 2.370281 TCAAACCGCAAGCTCTAGAG 57.630 50.000 15.85 15.85 0.00 2.43
318 319 1.300542 GCTCTAGAGCGATGTGGGC 60.301 63.158 28.04 3.98 45.29 5.36
319 320 1.007964 CTCTAGAGCGATGTGGGCG 60.008 63.158 6.86 0.00 35.00 6.13
320 321 1.448119 CTCTAGAGCGATGTGGGCGA 61.448 60.000 6.86 0.00 35.00 5.54
321 322 1.007964 CTAGAGCGATGTGGGCGAG 60.008 63.158 0.00 0.00 35.00 5.03
322 323 3.138930 TAGAGCGATGTGGGCGAGC 62.139 63.158 0.00 0.00 35.00 5.03
326 327 3.842923 CGATGTGGGCGAGCCTCT 61.843 66.667 14.33 0.00 36.10 3.69
327 328 2.586792 GATGTGGGCGAGCCTCTT 59.413 61.111 14.33 6.10 36.10 2.85
328 329 1.817099 GATGTGGGCGAGCCTCTTG 60.817 63.158 14.33 0.00 36.10 3.02
329 330 2.244117 GATGTGGGCGAGCCTCTTGA 62.244 60.000 14.33 0.00 36.10 3.02
330 331 2.435059 GTGGGCGAGCCTCTTGAC 60.435 66.667 14.33 0.00 36.10 3.18
331 332 4.069232 TGGGCGAGCCTCTTGACG 62.069 66.667 14.33 0.00 36.10 4.35
332 333 4.821589 GGGCGAGCCTCTTGACGG 62.822 72.222 14.33 0.00 36.10 4.79
333 334 3.760035 GGCGAGCCTCTTGACGGA 61.760 66.667 6.90 0.00 0.00 4.69
334 335 2.202676 GCGAGCCTCTTGACGGAG 60.203 66.667 0.00 0.00 0.00 4.63
335 336 2.701780 GCGAGCCTCTTGACGGAGA 61.702 63.158 0.00 0.00 35.52 3.71
336 337 1.883732 CGAGCCTCTTGACGGAGAA 59.116 57.895 0.00 0.00 35.52 2.87
337 338 0.179150 CGAGCCTCTTGACGGAGAAG 60.179 60.000 0.00 0.00 35.52 2.85
338 339 1.178276 GAGCCTCTTGACGGAGAAGA 58.822 55.000 0.00 0.00 35.52 2.87
339 340 1.546476 GAGCCTCTTGACGGAGAAGAA 59.454 52.381 0.00 0.00 35.52 2.52
340 341 1.548269 AGCCTCTTGACGGAGAAGAAG 59.452 52.381 0.00 0.00 35.52 2.85
341 342 1.273886 GCCTCTTGACGGAGAAGAAGT 59.726 52.381 0.00 0.00 35.52 3.01
342 343 2.492484 GCCTCTTGACGGAGAAGAAGTA 59.508 50.000 0.00 0.00 35.52 2.24
343 344 3.673866 GCCTCTTGACGGAGAAGAAGTAC 60.674 52.174 0.00 0.00 35.52 2.73
344 345 3.426426 CCTCTTGACGGAGAAGAAGTACG 60.426 52.174 0.00 0.00 35.52 3.67
345 346 3.405831 TCTTGACGGAGAAGAAGTACGA 58.594 45.455 0.00 0.00 0.00 3.43
346 347 3.436015 TCTTGACGGAGAAGAAGTACGAG 59.564 47.826 0.00 0.00 0.00 4.18
347 348 2.775890 TGACGGAGAAGAAGTACGAGT 58.224 47.619 0.00 0.00 0.00 4.18
348 349 3.144506 TGACGGAGAAGAAGTACGAGTT 58.855 45.455 0.00 0.00 0.00 3.01
349 350 3.058432 TGACGGAGAAGAAGTACGAGTTG 60.058 47.826 0.00 0.00 0.00 3.16
350 351 2.228343 ACGGAGAAGAAGTACGAGTTGG 59.772 50.000 0.00 0.00 0.00 3.77
351 352 2.228343 CGGAGAAGAAGTACGAGTTGGT 59.772 50.000 0.00 0.00 0.00 3.67
352 353 3.670091 CGGAGAAGAAGTACGAGTTGGTC 60.670 52.174 0.00 0.00 0.00 4.02
360 361 3.838468 CGAGTTGGTCGTTCCGTC 58.162 61.111 0.00 0.00 44.20 4.79
361 362 2.078914 CGAGTTGGTCGTTCCGTCG 61.079 63.158 0.00 0.00 44.20 5.12
362 363 1.008079 GAGTTGGTCGTTCCGTCGT 60.008 57.895 0.00 0.00 39.52 4.34
363 364 1.273455 GAGTTGGTCGTTCCGTCGTG 61.273 60.000 0.00 0.00 39.52 4.35
364 365 2.659244 TTGGTCGTTCCGTCGTGC 60.659 61.111 0.00 0.00 39.52 5.34
365 366 4.986587 TGGTCGTTCCGTCGTGCG 62.987 66.667 0.00 0.00 39.52 5.34
368 369 3.725459 TCGTTCCGTCGTGCGCTA 61.725 61.111 9.73 0.00 39.71 4.26
369 370 3.530104 CGTTCCGTCGTGCGCTAC 61.530 66.667 9.73 4.27 39.71 3.58
370 371 3.177249 GTTCCGTCGTGCGCTACC 61.177 66.667 9.73 0.00 39.71 3.18
371 372 4.424566 TTCCGTCGTGCGCTACCC 62.425 66.667 9.73 0.00 39.71 3.69
383 384 4.530857 CTACCCCGGCTCGCCAAG 62.531 72.222 8.87 0.00 35.37 3.61
391 392 3.435186 GCTCGCCAAGCCCTTCAC 61.435 66.667 0.00 0.00 45.92 3.18
392 393 3.121030 CTCGCCAAGCCCTTCACG 61.121 66.667 0.00 0.00 0.00 4.35
396 397 3.121030 CCAAGCCCTTCACGCGAG 61.121 66.667 15.93 4.59 0.00 5.03
397 398 3.121030 CAAGCCCTTCACGCGAGG 61.121 66.667 15.93 9.67 0.00 4.63
401 402 4.069232 CCCTTCACGCGAGGCAGA 62.069 66.667 15.93 0.00 32.74 4.26
402 403 2.048222 CCTTCACGCGAGGCAGAA 60.048 61.111 15.93 7.77 0.00 3.02
403 404 2.097038 CCTTCACGCGAGGCAGAAG 61.097 63.158 15.93 16.43 38.87 2.85
404 405 2.734673 CTTCACGCGAGGCAGAAGC 61.735 63.158 15.93 0.00 35.04 3.86
405 406 3.513768 TTCACGCGAGGCAGAAGCA 62.514 57.895 15.93 0.00 44.61 3.91
406 407 3.485431 CACGCGAGGCAGAAGCAG 61.485 66.667 15.93 0.00 44.61 4.24
409 410 2.185350 GCGAGGCAGAAGCAGCTA 59.815 61.111 0.00 0.00 44.61 3.32
410 411 1.882167 GCGAGGCAGAAGCAGCTAG 60.882 63.158 0.00 0.00 44.61 3.42
411 412 1.882167 CGAGGCAGAAGCAGCTAGC 60.882 63.158 6.62 6.62 44.61 3.42
421 422 3.826754 CAGCTAGCCTCGTCGCCA 61.827 66.667 12.13 0.00 0.00 5.69
422 423 3.827898 AGCTAGCCTCGTCGCCAC 61.828 66.667 12.13 0.00 0.00 5.01
835 836 8.067751 AGATGAGTGTAGCTATGTTACTTGAA 57.932 34.615 0.00 0.00 0.00 2.69
894 895 4.521256 ACATAACGTGCAACCCAAATTACT 59.479 37.500 0.00 0.00 0.00 2.24
895 896 5.706369 ACATAACGTGCAACCCAAATTACTA 59.294 36.000 0.00 0.00 0.00 1.82
896 897 4.759516 AACGTGCAACCCAAATTACTAG 57.240 40.909 0.00 0.00 0.00 2.57
955 959 1.484653 TGCGTGCCCATTAGATACTGT 59.515 47.619 0.00 0.00 0.00 3.55
957 961 2.483013 GCGTGCCCATTAGATACTGTGA 60.483 50.000 0.00 0.00 0.00 3.58
977 981 1.045911 GCCTTCTCCTCCTCATCCGT 61.046 60.000 0.00 0.00 0.00 4.69
985 989 1.678627 CCTCCTCATCCGTGACACTAG 59.321 57.143 3.68 0.00 0.00 2.57
1056 1095 3.467226 CGGTCATGCCTACCCCGT 61.467 66.667 4.92 0.00 33.10 5.28
1104 1143 0.109132 CATTGCTCCTTTTCGTGGCC 60.109 55.000 0.00 0.00 0.00 5.36
1139 1178 2.738521 CCTCGTCGTGGTTGGCAG 60.739 66.667 5.15 0.00 0.00 4.85
1140 1179 2.029073 CTCGTCGTGGTTGGCAGT 59.971 61.111 0.00 0.00 0.00 4.40
1141 1180 2.279851 TCGTCGTGGTTGGCAGTG 60.280 61.111 0.00 0.00 0.00 3.66
1142 1181 3.345808 CGTCGTGGTTGGCAGTGG 61.346 66.667 0.00 0.00 0.00 4.00
1144 1183 4.182433 TCGTGGTTGGCAGTGGCA 62.182 61.111 16.56 16.56 43.71 4.92
1146 1185 2.832661 GTGGTTGGCAGTGGCACA 60.833 61.111 20.46 12.44 43.71 4.57
1151 1299 2.331893 TTGGCAGTGGCACATACGC 61.332 57.895 20.46 15.60 44.52 4.42
1234 1382 0.745845 CCAAGCAGCGGCAAGTAGAT 60.746 55.000 12.44 0.00 44.61 1.98
1235 1383 0.654683 CAAGCAGCGGCAAGTAGATC 59.345 55.000 12.44 0.00 44.61 2.75
1245 1393 2.424956 GGCAAGTAGATCCTTTTGGCTG 59.575 50.000 15.51 0.00 41.31 4.85
1257 1424 9.732130 AGATCCTTTTGGCTGTATTAATCTATC 57.268 33.333 0.00 0.00 40.12 2.08
1258 1425 9.732130 GATCCTTTTGGCTGTATTAATCTATCT 57.268 33.333 0.00 0.00 40.12 1.98
1335 1674 4.974645 ACCCTGACTTGTTGAGATTGTA 57.025 40.909 0.00 0.00 0.00 2.41
1364 1709 4.508128 GGCGCCTCGGACGATGAA 62.508 66.667 22.15 0.00 0.00 2.57
1523 1868 2.683933 ATCGGCCACGTCCTCCTT 60.684 61.111 2.24 0.00 41.85 3.36
1586 1931 4.509737 GGCGTCCGGTGCTACCTC 62.510 72.222 18.36 1.20 35.66 3.85
1589 1934 2.348888 CGTCCGGTGCTACCTCCTT 61.349 63.158 0.00 0.00 35.66 3.36
1646 1994 0.743688 CGGAGCAGCTCTACATGTCT 59.256 55.000 21.99 0.00 0.00 3.41
1727 2075 2.802816 CGGCTACAGCTTCATATTCACC 59.197 50.000 0.54 0.00 41.70 4.02
1731 2079 4.444720 GCTACAGCTTCATATTCACCGTAC 59.555 45.833 0.00 0.00 38.21 3.67
1735 2083 4.440103 CAGCTTCATATTCACCGTACGTAC 59.560 45.833 15.90 15.90 0.00 3.67
1737 2085 5.528690 AGCTTCATATTCACCGTACGTACTA 59.471 40.000 22.55 8.20 0.00 1.82
1738 2086 5.622856 GCTTCATATTCACCGTACGTACTAC 59.377 44.000 22.55 0.06 0.00 2.73
1739 2087 6.512415 GCTTCATATTCACCGTACGTACTACT 60.512 42.308 22.55 2.75 0.00 2.57
1740 2088 6.530913 TCATATTCACCGTACGTACTACTC 57.469 41.667 22.55 0.00 0.00 2.59
1741 2089 5.466728 TCATATTCACCGTACGTACTACTCC 59.533 44.000 22.55 0.00 0.00 3.85
1743 2091 1.277842 TCACCGTACGTACTACTCCCA 59.722 52.381 22.55 0.00 0.00 4.37
1755 2161 1.478510 CTACTCCCAACGAGCTCACAT 59.521 52.381 15.40 0.00 43.01 3.21
1763 2169 2.919859 CAACGAGCTCACATAGTCACAG 59.080 50.000 15.40 0.00 0.00 3.66
1764 2170 2.437413 ACGAGCTCACATAGTCACAGA 58.563 47.619 15.40 0.00 0.00 3.41
1822 2236 7.247456 TGTGTGGACTATTTTACACATAGGA 57.753 36.000 5.07 0.00 45.83 2.94
1823 2237 7.327975 TGTGTGGACTATTTTACACATAGGAG 58.672 38.462 5.07 0.00 45.83 3.69
1824 2238 7.038587 TGTGTGGACTATTTTACACATAGGAGT 60.039 37.037 5.07 0.00 45.83 3.85
1826 2240 8.472413 TGTGGACTATTTTACACATAGGAGTAC 58.528 37.037 0.00 0.00 38.76 2.73
1827 2241 8.693625 GTGGACTATTTTACACATAGGAGTACT 58.306 37.037 0.00 0.00 34.16 2.73
1828 2242 9.263446 TGGACTATTTTACACATAGGAGTACTT 57.737 33.333 0.00 0.00 0.00 2.24
1938 2465 2.710902 CCTGATCAGCACCGACGGA 61.711 63.158 23.38 0.00 0.00 4.69
1983 2510 3.414700 GGCCACGAGCTCAACACG 61.415 66.667 15.40 1.87 43.05 4.49
1984 2511 2.355837 GCCACGAGCTCAACACGA 60.356 61.111 15.40 0.00 38.99 4.35
1986 2513 1.734477 CCACGAGCTCAACACGAGG 60.734 63.158 15.40 4.11 42.55 4.63
2180 2707 2.752358 CTTCTGCCAGGACAGCCA 59.248 61.111 6.12 0.00 37.59 4.75
2325 2856 3.869272 CCGCGTCATTCAGCCTGC 61.869 66.667 4.92 0.00 0.00 4.85
2326 2857 2.816958 CGCGTCATTCAGCCTGCT 60.817 61.111 0.00 0.00 0.00 4.24
2327 2858 2.393768 CGCGTCATTCAGCCTGCTT 61.394 57.895 0.00 0.00 0.00 3.91
2328 2859 1.136147 GCGTCATTCAGCCTGCTTG 59.864 57.895 0.00 0.00 0.00 4.01
2329 2860 1.798735 CGTCATTCAGCCTGCTTGG 59.201 57.895 0.00 0.00 39.35 3.61
2334 2865 0.465097 ATTCAGCCTGCTTGGGATCG 60.465 55.000 0.00 0.00 36.00 3.69
2403 2934 3.541632 TCCCTTATCTCGTTTCCATTGC 58.458 45.455 0.00 0.00 0.00 3.56
2446 2977 5.957842 TTACTGCTGGTAAGATGTTTTGG 57.042 39.130 0.00 0.00 35.69 3.28
2449 2980 4.649218 ACTGCTGGTAAGATGTTTTGGTTT 59.351 37.500 0.00 0.00 0.00 3.27
2454 2985 5.665459 TGGTAAGATGTTTTGGTTTGTTGG 58.335 37.500 0.00 0.00 0.00 3.77
2461 2992 2.871633 GTTTTGGTTTGTTGGCATGAGG 59.128 45.455 0.00 0.00 0.00 3.86
2468 2999 4.442753 GGTTTGTTGGCATGAGGAAAGAAA 60.443 41.667 0.00 0.00 0.00 2.52
2486 3017 6.983474 AAGAAAAACACCCAAAACATCTTG 57.017 33.333 0.00 0.00 0.00 3.02
2488 3019 4.486125 AAAACACCCAAAACATCTTGCT 57.514 36.364 0.00 0.00 0.00 3.91
2534 3085 5.871396 TCACATAGTACTTCCTTCATCCC 57.129 43.478 0.00 0.00 0.00 3.85
2535 3086 5.529289 TCACATAGTACTTCCTTCATCCCT 58.471 41.667 0.00 0.00 0.00 4.20
2554 3105 5.650283 TCCCTGTTTATTGTTCCCAAAGAT 58.350 37.500 0.00 0.00 33.44 2.40
2577 3128 5.916318 TCAAAACAGCATGACCAAGAAAAT 58.084 33.333 0.00 0.00 39.69 1.82
2583 3134 5.536161 ACAGCATGACCAAGAAAATGTACTT 59.464 36.000 0.00 0.00 39.69 2.24
2584 3135 5.860182 CAGCATGACCAAGAAAATGTACTTG 59.140 40.000 0.00 0.00 39.69 3.16
2585 3136 5.769662 AGCATGACCAAGAAAATGTACTTGA 59.230 36.000 0.00 0.00 43.98 3.02
2586 3137 6.435277 AGCATGACCAAGAAAATGTACTTGAT 59.565 34.615 0.00 0.00 43.98 2.57
2587 3138 7.039504 AGCATGACCAAGAAAATGTACTTGATT 60.040 33.333 0.00 0.00 43.98 2.57
2588 3139 7.062605 GCATGACCAAGAAAATGTACTTGATTG 59.937 37.037 0.00 0.00 43.98 2.67
2589 3140 7.815840 TGACCAAGAAAATGTACTTGATTGA 57.184 32.000 0.00 0.00 43.98 2.57
2592 3143 7.875971 ACCAAGAAAATGTACTTGATTGAGAC 58.124 34.615 0.00 0.00 43.98 3.36
2703 3282 8.206325 ACAATAAATGTGATTGCTCTCTACTG 57.794 34.615 0.00 0.00 41.93 2.74
2704 3283 6.857777 ATAAATGTGATTGCTCTCTACTGC 57.142 37.500 0.00 0.00 0.00 4.40
2711 3290 1.322538 TGCTCTCTACTGCGCCATGA 61.323 55.000 4.18 0.00 0.00 3.07
2730 3309 1.953686 GAAGCTTGTGCAAGGGTTGTA 59.046 47.619 2.10 0.00 42.74 2.41
2733 3312 0.598065 CTTGTGCAAGGGTTGTAGGC 59.402 55.000 4.13 0.00 34.87 3.93
2758 3376 7.497909 GCTAAATCTACATACAACTTTGCCCTA 59.502 37.037 0.00 0.00 0.00 3.53
2769 3387 6.252995 ACAACTTTGCCCTATTTCCTCATTA 58.747 36.000 0.00 0.00 0.00 1.90
2773 3391 7.785033 ACTTTGCCCTATTTCCTCATTAATTG 58.215 34.615 0.00 0.00 0.00 2.32
2776 3394 5.840149 TGCCCTATTTCCTCATTAATTGCAT 59.160 36.000 0.00 0.00 0.00 3.96
2784 3402 4.406326 TCCTCATTAATTGCATGCCACATT 59.594 37.500 16.68 12.98 0.00 2.71
2798 3418 4.030216 TGCCACATTATCACTGTCCTAGA 58.970 43.478 0.00 0.00 0.00 2.43
2829 3449 2.871453 ACCAACACCCATCTTACAACC 58.129 47.619 0.00 0.00 0.00 3.77
2834 3454 2.105134 ACACCCATCTTACAACCGTTGA 59.895 45.455 18.19 0.00 0.00 3.18
2847 3467 1.628846 ACCGTTGAAGATGCCCTACTT 59.371 47.619 0.00 0.00 0.00 2.24
2898 3518 1.070786 GTCTTCTTCGGGTGGTGCA 59.929 57.895 0.00 0.00 0.00 4.57
2905 3525 4.308458 CGGGTGGTGCAAGACGGA 62.308 66.667 0.00 0.00 0.00 4.69
2937 3567 3.680156 GCCAATGGCGAGTTTGGA 58.320 55.556 9.14 0.00 44.23 3.53
3038 3668 1.915078 GCAGGGCTTGAGGGCTAGAA 61.915 60.000 0.00 0.00 40.65 2.10
3105 3735 1.510480 GGTTGCCTAGGCGATGATGC 61.510 60.000 26.74 13.07 45.51 3.91
3129 3759 2.484062 GGCCCCAATGATCTGCACG 61.484 63.158 0.00 0.00 0.00 5.34
3174 3805 2.279517 CTGGGATCTGGCGTACGC 60.280 66.667 31.54 31.54 41.06 4.42
3206 3837 2.048222 ACACGTGGATCGGCACTG 60.048 61.111 21.57 0.00 44.69 3.66
3260 3892 4.157120 CGACGGTCCCACCCATCC 62.157 72.222 1.91 0.00 33.75 3.51
3261 3893 2.687566 GACGGTCCCACCCATCCT 60.688 66.667 0.00 0.00 33.75 3.24
3276 3908 3.568007 CCCATCCTCTTTTCGTGTCAAAA 59.432 43.478 0.00 0.00 0.00 2.44
3298 3930 1.627864 AGTGTTTTGGCGGCCTATTT 58.372 45.000 21.46 0.00 0.00 1.40
3312 3944 2.942306 GCCTATTTTCTTGGTGGCGGTA 60.942 50.000 0.00 0.00 0.00 4.02
3320 3952 2.431942 GGTGGCGGTAGTGTGTCG 60.432 66.667 0.00 0.00 0.00 4.35
3335 3967 3.702048 TCGGTCTTGGAAGCCGGG 61.702 66.667 2.18 0.00 42.18 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.690857 CGCTTAAATACCAGCTCTAGTAACC 59.309 44.000 0.00 0.00 33.52 2.85
1 2 5.690857 CCGCTTAAATACCAGCTCTAGTAAC 59.309 44.000 0.00 0.00 33.52 2.50
2 3 5.738208 GCCGCTTAAATACCAGCTCTAGTAA 60.738 44.000 0.00 0.00 33.52 2.24
3 4 4.261909 GCCGCTTAAATACCAGCTCTAGTA 60.262 45.833 0.00 0.00 33.52 1.82
4 5 3.492829 GCCGCTTAAATACCAGCTCTAGT 60.493 47.826 0.00 0.00 33.52 2.57
5 6 3.060602 GCCGCTTAAATACCAGCTCTAG 58.939 50.000 0.00 0.00 33.52 2.43
6 7 2.545113 CGCCGCTTAAATACCAGCTCTA 60.545 50.000 0.00 0.00 33.52 2.43
7 8 1.806623 CGCCGCTTAAATACCAGCTCT 60.807 52.381 0.00 0.00 33.52 4.09
8 9 0.582005 CGCCGCTTAAATACCAGCTC 59.418 55.000 0.00 0.00 33.52 4.09
9 10 1.436983 GCGCCGCTTAAATACCAGCT 61.437 55.000 0.00 0.00 33.52 4.24
10 11 1.010013 GCGCCGCTTAAATACCAGC 60.010 57.895 0.00 0.00 0.00 4.85
11 12 1.275657 CGCGCCGCTTAAATACCAG 59.724 57.895 7.78 0.00 0.00 4.00
12 13 3.401095 CGCGCCGCTTAAATACCA 58.599 55.556 7.78 0.00 0.00 3.25
55 56 4.467084 GGCGCGGAGATTGGGACA 62.467 66.667 8.83 0.00 0.00 4.02
56 57 3.969250 TTGGCGCGGAGATTGGGAC 62.969 63.158 8.83 0.00 0.00 4.46
57 58 2.550699 AATTGGCGCGGAGATTGGGA 62.551 55.000 8.83 0.00 0.00 4.37
58 59 2.063541 GAATTGGCGCGGAGATTGGG 62.064 60.000 8.83 0.00 0.00 4.12
59 60 1.356624 GAATTGGCGCGGAGATTGG 59.643 57.895 8.83 0.00 0.00 3.16
60 61 0.451383 TTGAATTGGCGCGGAGATTG 59.549 50.000 8.83 0.00 0.00 2.67
61 62 1.066002 CATTGAATTGGCGCGGAGATT 59.934 47.619 8.83 0.00 0.00 2.40
62 63 0.664761 CATTGAATTGGCGCGGAGAT 59.335 50.000 8.83 0.00 0.00 2.75
63 64 1.992233 GCATTGAATTGGCGCGGAGA 61.992 55.000 8.83 0.00 0.00 3.71
64 65 1.587088 GCATTGAATTGGCGCGGAG 60.587 57.895 8.83 0.00 0.00 4.63
65 66 2.489285 GCATTGAATTGGCGCGGA 59.511 55.556 8.83 0.00 0.00 5.54
66 67 2.583045 GGCATTGAATTGGCGCGG 60.583 61.111 8.83 0.00 32.10 6.46
70 71 0.383231 CTCTCCGGCATTGAATTGGC 59.617 55.000 0.00 0.00 38.71 4.52
71 72 2.042686 TCTCTCCGGCATTGAATTGG 57.957 50.000 0.00 0.00 0.00 3.16
72 73 2.947652 ACATCTCTCCGGCATTGAATTG 59.052 45.455 0.00 0.00 0.00 2.32
73 74 2.947652 CACATCTCTCCGGCATTGAATT 59.052 45.455 0.00 0.00 0.00 2.17
74 75 2.171237 TCACATCTCTCCGGCATTGAAT 59.829 45.455 0.00 0.00 0.00 2.57
75 76 1.554617 TCACATCTCTCCGGCATTGAA 59.445 47.619 0.00 0.00 0.00 2.69
76 77 1.134699 GTCACATCTCTCCGGCATTGA 60.135 52.381 0.00 0.00 0.00 2.57
77 78 1.293924 GTCACATCTCTCCGGCATTG 58.706 55.000 0.00 0.00 0.00 2.82
78 79 0.179000 GGTCACATCTCTCCGGCATT 59.821 55.000 0.00 0.00 0.00 3.56
79 80 0.977627 TGGTCACATCTCTCCGGCAT 60.978 55.000 0.00 0.00 0.00 4.40
80 81 1.607801 CTGGTCACATCTCTCCGGCA 61.608 60.000 0.00 0.00 0.00 5.69
81 82 1.142748 CTGGTCACATCTCTCCGGC 59.857 63.158 0.00 0.00 0.00 6.13
82 83 0.457851 GTCTGGTCACATCTCTCCGG 59.542 60.000 0.00 0.00 0.00 5.14
83 84 0.099613 CGTCTGGTCACATCTCTCCG 59.900 60.000 0.00 0.00 0.00 4.63
84 85 0.457851 CCGTCTGGTCACATCTCTCC 59.542 60.000 0.00 0.00 0.00 3.71
85 86 0.457851 CCCGTCTGGTCACATCTCTC 59.542 60.000 0.00 0.00 0.00 3.20
86 87 0.972983 CCCCGTCTGGTCACATCTCT 60.973 60.000 0.00 0.00 0.00 3.10
87 88 1.517832 CCCCGTCTGGTCACATCTC 59.482 63.158 0.00 0.00 0.00 2.75
88 89 2.660064 GCCCCGTCTGGTCACATCT 61.660 63.158 0.00 0.00 0.00 2.90
89 90 2.125106 GCCCCGTCTGGTCACATC 60.125 66.667 0.00 0.00 0.00 3.06
90 91 4.082523 CGCCCCGTCTGGTCACAT 62.083 66.667 0.00 0.00 0.00 3.21
100 101 4.828296 ATAGTCGTCCCGCCCCGT 62.828 66.667 0.00 0.00 0.00 5.28
101 102 3.974757 GATAGTCGTCCCGCCCCG 61.975 72.222 0.00 0.00 0.00 5.73
102 103 1.228367 TAGATAGTCGTCCCGCCCC 60.228 63.158 0.00 0.00 0.00 5.80
103 104 1.522302 GGTAGATAGTCGTCCCGCCC 61.522 65.000 0.00 0.00 0.00 6.13
104 105 0.820891 TGGTAGATAGTCGTCCCGCC 60.821 60.000 0.00 0.00 0.00 6.13
105 106 0.310232 GTGGTAGATAGTCGTCCCGC 59.690 60.000 0.00 0.00 0.00 6.13
106 107 1.671979 TGTGGTAGATAGTCGTCCCG 58.328 55.000 0.00 0.00 0.00 5.14
107 108 4.667519 AAATGTGGTAGATAGTCGTCCC 57.332 45.455 0.00 0.00 0.00 4.46
108 109 6.437094 GTCTAAATGTGGTAGATAGTCGTCC 58.563 44.000 0.00 0.00 30.52 4.79
109 110 6.437094 GGTCTAAATGTGGTAGATAGTCGTC 58.563 44.000 0.00 0.00 30.52 4.20
110 111 5.008415 CGGTCTAAATGTGGTAGATAGTCGT 59.992 44.000 0.00 0.00 30.52 4.34
111 112 5.450171 CGGTCTAAATGTGGTAGATAGTCG 58.550 45.833 0.00 0.00 30.52 4.18
112 113 5.770417 CCGGTCTAAATGTGGTAGATAGTC 58.230 45.833 0.00 0.00 30.52 2.59
113 114 4.038883 GCCGGTCTAAATGTGGTAGATAGT 59.961 45.833 1.90 0.00 30.52 2.12
114 115 4.281182 AGCCGGTCTAAATGTGGTAGATAG 59.719 45.833 1.90 0.00 30.52 2.08
115 116 4.038763 CAGCCGGTCTAAATGTGGTAGATA 59.961 45.833 1.90 0.00 30.52 1.98
116 117 3.039011 AGCCGGTCTAAATGTGGTAGAT 58.961 45.455 1.90 0.00 30.52 1.98
117 118 2.167693 CAGCCGGTCTAAATGTGGTAGA 59.832 50.000 1.90 0.00 0.00 2.59
118 119 2.550978 CAGCCGGTCTAAATGTGGTAG 58.449 52.381 1.90 0.00 0.00 3.18
119 120 1.406341 GCAGCCGGTCTAAATGTGGTA 60.406 52.381 1.90 0.00 0.00 3.25
120 121 0.676782 GCAGCCGGTCTAAATGTGGT 60.677 55.000 1.90 0.00 0.00 4.16
121 122 1.376609 GGCAGCCGGTCTAAATGTGG 61.377 60.000 1.90 0.00 0.00 4.17
122 123 1.376609 GGGCAGCCGGTCTAAATGTG 61.377 60.000 5.00 0.00 0.00 3.21
123 124 1.077716 GGGCAGCCGGTCTAAATGT 60.078 57.895 5.00 0.00 0.00 2.71
124 125 2.180204 CGGGCAGCCGGTCTAAATG 61.180 63.158 10.93 0.00 0.00 2.32
125 126 2.189521 CGGGCAGCCGGTCTAAAT 59.810 61.111 10.93 0.00 0.00 1.40
126 127 3.305177 GACGGGCAGCCGGTCTAAA 62.305 63.158 34.27 0.00 46.10 1.85
127 128 3.766691 GACGGGCAGCCGGTCTAA 61.767 66.667 34.27 0.00 46.10 2.10
133 134 4.379243 AGAACAGACGGGCAGCCG 62.379 66.667 5.00 3.34 39.31 5.52
134 135 2.435059 GAGAACAGACGGGCAGCC 60.435 66.667 1.26 1.26 0.00 4.85
135 136 2.435059 GGAGAACAGACGGGCAGC 60.435 66.667 0.00 0.00 0.00 5.25
136 137 1.079543 CAGGAGAACAGACGGGCAG 60.080 63.158 0.00 0.00 0.00 4.85
137 138 1.816863 GACAGGAGAACAGACGGGCA 61.817 60.000 0.00 0.00 0.00 5.36
138 139 1.079750 GACAGGAGAACAGACGGGC 60.080 63.158 0.00 0.00 0.00 6.13
139 140 1.213013 CGACAGGAGAACAGACGGG 59.787 63.158 0.00 0.00 0.00 5.28
140 141 1.213013 CCGACAGGAGAACAGACGG 59.787 63.158 0.00 0.00 41.02 4.79
141 142 1.444553 GCCGACAGGAGAACAGACG 60.445 63.158 0.00 0.00 41.02 4.18
142 143 0.247736 ATGCCGACAGGAGAACAGAC 59.752 55.000 0.00 0.00 41.02 3.51
143 144 0.976641 AATGCCGACAGGAGAACAGA 59.023 50.000 0.00 0.00 41.02 3.41
144 145 2.672961 TAATGCCGACAGGAGAACAG 57.327 50.000 0.00 0.00 41.02 3.16
145 146 3.071479 GTTTAATGCCGACAGGAGAACA 58.929 45.455 0.00 0.00 41.02 3.18
146 147 3.071479 TGTTTAATGCCGACAGGAGAAC 58.929 45.455 0.00 0.00 41.02 3.01
147 148 3.410631 TGTTTAATGCCGACAGGAGAA 57.589 42.857 0.00 0.00 41.02 2.87
148 149 3.334691 CTTGTTTAATGCCGACAGGAGA 58.665 45.455 0.00 0.00 41.02 3.71
149 150 2.159517 GCTTGTTTAATGCCGACAGGAG 60.160 50.000 0.00 0.00 41.02 3.69
150 151 1.810151 GCTTGTTTAATGCCGACAGGA 59.190 47.619 0.00 0.00 41.02 3.86
151 152 1.812571 AGCTTGTTTAATGCCGACAGG 59.187 47.619 0.00 0.00 41.62 4.00
152 153 2.474526 CGAGCTTGTTTAATGCCGACAG 60.475 50.000 0.00 0.00 0.00 3.51
153 154 1.463056 CGAGCTTGTTTAATGCCGACA 59.537 47.619 0.00 0.00 0.00 4.35
154 155 1.202031 CCGAGCTTGTTTAATGCCGAC 60.202 52.381 0.00 0.00 0.00 4.79
155 156 1.083489 CCGAGCTTGTTTAATGCCGA 58.917 50.000 0.00 0.00 0.00 5.54
156 157 0.523335 GCCGAGCTTGTTTAATGCCG 60.523 55.000 0.00 0.00 0.00 5.69
157 158 0.523335 CGCCGAGCTTGTTTAATGCC 60.523 55.000 0.00 0.00 0.00 4.40
158 159 0.523335 CCGCCGAGCTTGTTTAATGC 60.523 55.000 0.00 0.00 0.00 3.56
159 160 0.523335 GCCGCCGAGCTTGTTTAATG 60.523 55.000 0.00 0.00 0.00 1.90
160 161 1.800681 GCCGCCGAGCTTGTTTAAT 59.199 52.632 0.00 0.00 0.00 1.40
161 162 2.673114 CGCCGCCGAGCTTGTTTAA 61.673 57.895 0.00 0.00 36.29 1.52
162 163 3.115892 CGCCGCCGAGCTTGTTTA 61.116 61.111 0.00 0.00 36.29 2.01
166 167 4.585526 TATCCGCCGCCGAGCTTG 62.586 66.667 0.00 0.00 36.29 4.01
167 168 3.379865 TTTATCCGCCGCCGAGCTT 62.380 57.895 0.00 0.00 36.29 3.74
168 169 3.845259 TTTATCCGCCGCCGAGCT 61.845 61.111 0.00 0.00 36.29 4.09
169 170 3.637030 GTTTATCCGCCGCCGAGC 61.637 66.667 0.00 0.00 36.29 5.03
170 171 2.965462 GGTTTATCCGCCGCCGAG 60.965 66.667 0.00 0.00 36.29 4.63
171 172 4.534141 GGGTTTATCCGCCGCCGA 62.534 66.667 0.00 0.00 37.00 5.54
172 173 4.841861 TGGGTTTATCCGCCGCCG 62.842 66.667 0.00 0.00 37.00 6.46
173 174 3.206957 GTGGGTTTATCCGCCGCC 61.207 66.667 0.00 0.00 37.00 6.13
174 175 3.206957 GGTGGGTTTATCCGCCGC 61.207 66.667 0.00 0.00 46.13 6.53
177 178 2.515290 CGGGGTGGGTTTATCCGC 60.515 66.667 0.00 0.00 37.00 5.54
178 179 2.191109 CCGGGGTGGGTTTATCCG 59.809 66.667 0.00 0.00 40.32 4.18
179 180 2.124024 GCCGGGGTGGGTTTATCC 60.124 66.667 2.18 0.00 38.63 2.59
180 181 2.515290 CGCCGGGGTGGGTTTATC 60.515 66.667 11.01 0.00 38.63 1.75
181 182 4.807631 GCGCCGGGGTGGGTTTAT 62.808 66.667 20.83 0.00 38.63 1.40
193 194 4.389576 GTTTCAGTGCAGGCGCCG 62.390 66.667 23.20 17.35 37.32 6.46
194 195 2.844451 TTGTTTCAGTGCAGGCGCC 61.844 57.895 21.89 21.89 37.32 6.53
195 196 1.658409 GTTGTTTCAGTGCAGGCGC 60.658 57.895 0.00 0.00 39.24 6.53
196 197 1.008538 GGTTGTTTCAGTGCAGGCG 60.009 57.895 0.00 0.00 0.00 5.52
197 198 1.363807 GGGTTGTTTCAGTGCAGGC 59.636 57.895 0.00 0.00 0.00 4.85
198 199 1.270550 GATGGGTTGTTTCAGTGCAGG 59.729 52.381 0.00 0.00 0.00 4.85
199 200 1.270550 GGATGGGTTGTTTCAGTGCAG 59.729 52.381 0.00 0.00 0.00 4.41
200 201 1.133513 AGGATGGGTTGTTTCAGTGCA 60.134 47.619 0.00 0.00 0.00 4.57
201 202 1.620822 AGGATGGGTTGTTTCAGTGC 58.379 50.000 0.00 0.00 0.00 4.40
202 203 3.696051 CCATAGGATGGGTTGTTTCAGTG 59.304 47.826 0.00 0.00 46.86 3.66
203 204 3.968265 CCATAGGATGGGTTGTTTCAGT 58.032 45.455 0.00 0.00 46.86 3.41
230 231 1.343142 TGTATACATAGCGGGTGCCTG 59.657 52.381 0.08 0.00 44.31 4.85
231 232 1.712056 TGTATACATAGCGGGTGCCT 58.288 50.000 0.08 0.00 44.31 4.75
232 233 2.346803 CATGTATACATAGCGGGTGCC 58.653 52.381 17.86 0.00 36.65 5.01
233 234 2.346803 CCATGTATACATAGCGGGTGC 58.653 52.381 17.86 0.00 36.37 5.01
234 235 2.346803 GCCATGTATACATAGCGGGTG 58.653 52.381 18.40 6.91 31.92 4.61
235 236 1.278127 GGCCATGTATACATAGCGGGT 59.722 52.381 23.94 0.00 40.97 5.28
236 237 1.277842 TGGCCATGTATACATAGCGGG 59.722 52.381 23.94 18.61 40.97 6.13
237 238 2.760634 TGGCCATGTATACATAGCGG 57.239 50.000 23.94 18.90 40.97 5.52
238 239 2.352651 GCATGGCCATGTATACATAGCG 59.647 50.000 39.08 15.93 40.97 4.26
239 240 2.352651 CGCATGGCCATGTATACATAGC 59.647 50.000 39.08 23.20 39.67 2.97
240 241 2.352651 GCGCATGGCCATGTATACATAG 59.647 50.000 39.08 22.80 40.80 2.23
241 242 2.355197 GCGCATGGCCATGTATACATA 58.645 47.619 39.08 3.31 40.80 2.29
242 243 1.167851 GCGCATGGCCATGTATACAT 58.832 50.000 39.08 12.75 40.80 2.29
243 244 1.227342 CGCGCATGGCCATGTATACA 61.227 55.000 39.08 8.27 40.80 2.29
244 245 1.497278 CGCGCATGGCCATGTATAC 59.503 57.895 39.08 26.26 40.80 1.47
245 246 1.670730 CCGCGCATGGCCATGTATA 60.671 57.895 39.08 3.80 40.80 1.47
246 247 2.979676 CCGCGCATGGCCATGTAT 60.980 61.111 39.08 9.40 40.80 2.29
254 255 3.349006 GGATAGTGCCGCGCATGG 61.349 66.667 8.75 1.69 41.91 3.66
255 256 3.705638 CGGATAGTGCCGCGCATG 61.706 66.667 8.75 0.00 45.38 4.06
273 274 3.869272 GATGAAGGTGGCGCGCTG 61.869 66.667 32.29 0.00 0.00 5.18
274 275 3.899981 TTGATGAAGGTGGCGCGCT 62.900 57.895 32.29 10.98 0.00 5.92
275 276 2.976840 TTTGATGAAGGTGGCGCGC 61.977 57.895 25.94 25.94 0.00 6.86
276 277 1.154225 GTTTGATGAAGGTGGCGCG 60.154 57.895 0.00 0.00 0.00 6.86
277 278 1.212751 GGTTTGATGAAGGTGGCGC 59.787 57.895 0.00 0.00 0.00 6.53
278 279 1.501741 CGGTTTGATGAAGGTGGCG 59.498 57.895 0.00 0.00 0.00 5.69
279 280 1.212751 GCGGTTTGATGAAGGTGGC 59.787 57.895 0.00 0.00 0.00 5.01
280 281 0.958091 TTGCGGTTTGATGAAGGTGG 59.042 50.000 0.00 0.00 0.00 4.61
281 282 1.666888 GCTTGCGGTTTGATGAAGGTG 60.667 52.381 0.00 0.00 0.00 4.00
282 283 0.598065 GCTTGCGGTTTGATGAAGGT 59.402 50.000 0.00 0.00 0.00 3.50
283 284 0.883833 AGCTTGCGGTTTGATGAAGG 59.116 50.000 0.00 0.00 0.00 3.46
284 285 1.808945 AGAGCTTGCGGTTTGATGAAG 59.191 47.619 0.00 0.00 0.00 3.02
285 286 1.896220 AGAGCTTGCGGTTTGATGAA 58.104 45.000 0.00 0.00 0.00 2.57
286 287 2.233676 TCTAGAGCTTGCGGTTTGATGA 59.766 45.455 0.00 0.00 0.00 2.92
287 288 2.606725 CTCTAGAGCTTGCGGTTTGATG 59.393 50.000 6.86 0.00 0.00 3.07
288 289 2.898705 CTCTAGAGCTTGCGGTTTGAT 58.101 47.619 6.86 0.00 0.00 2.57
289 290 2.370281 CTCTAGAGCTTGCGGTTTGA 57.630 50.000 6.86 0.00 0.00 2.69
301 302 1.007964 CGCCCACATCGCTCTAGAG 60.008 63.158 15.85 15.85 0.00 2.43
302 303 1.448119 CTCGCCCACATCGCTCTAGA 61.448 60.000 0.00 0.00 0.00 2.43
303 304 1.007964 CTCGCCCACATCGCTCTAG 60.008 63.158 0.00 0.00 0.00 2.43
304 305 3.120105 CTCGCCCACATCGCTCTA 58.880 61.111 0.00 0.00 0.00 2.43
305 306 4.521062 GCTCGCCCACATCGCTCT 62.521 66.667 0.00 0.00 0.00 4.09
309 310 3.376935 AAGAGGCTCGCCCACATCG 62.377 63.158 9.22 0.00 36.58 3.84
310 311 1.817099 CAAGAGGCTCGCCCACATC 60.817 63.158 9.22 0.00 36.58 3.06
311 312 2.270205 CAAGAGGCTCGCCCACAT 59.730 61.111 9.22 0.00 36.58 3.21
312 313 2.922503 TCAAGAGGCTCGCCCACA 60.923 61.111 9.22 0.00 36.58 4.17
313 314 2.435059 GTCAAGAGGCTCGCCCAC 60.435 66.667 9.22 1.11 36.58 4.61
314 315 4.069232 CGTCAAGAGGCTCGCCCA 62.069 66.667 9.22 0.00 36.58 5.36
315 316 4.821589 CCGTCAAGAGGCTCGCCC 62.822 72.222 9.22 0.00 36.58 6.13
316 317 3.708220 CTCCGTCAAGAGGCTCGCC 62.708 68.421 9.22 0.00 0.00 5.54
317 318 2.202676 CTCCGTCAAGAGGCTCGC 60.203 66.667 9.22 0.31 0.00 5.03
318 319 0.179150 CTTCTCCGTCAAGAGGCTCG 60.179 60.000 9.22 0.00 34.46 5.03
319 320 1.178276 TCTTCTCCGTCAAGAGGCTC 58.822 55.000 6.34 6.34 34.46 4.70
320 321 1.548269 CTTCTTCTCCGTCAAGAGGCT 59.452 52.381 0.00 0.00 34.46 4.58
321 322 1.273886 ACTTCTTCTCCGTCAAGAGGC 59.726 52.381 0.00 0.00 31.68 4.70
322 323 3.426426 CGTACTTCTTCTCCGTCAAGAGG 60.426 52.174 0.00 0.00 34.07 3.69
323 324 3.436015 TCGTACTTCTTCTCCGTCAAGAG 59.564 47.826 0.00 0.00 31.48 2.85
324 325 3.405831 TCGTACTTCTTCTCCGTCAAGA 58.594 45.455 0.00 0.00 0.00 3.02
325 326 3.188873 ACTCGTACTTCTTCTCCGTCAAG 59.811 47.826 0.00 0.00 0.00 3.02
326 327 3.144506 ACTCGTACTTCTTCTCCGTCAA 58.855 45.455 0.00 0.00 0.00 3.18
327 328 2.775890 ACTCGTACTTCTTCTCCGTCA 58.224 47.619 0.00 0.00 0.00 4.35
328 329 3.490399 CAACTCGTACTTCTTCTCCGTC 58.510 50.000 0.00 0.00 0.00 4.79
329 330 2.228343 CCAACTCGTACTTCTTCTCCGT 59.772 50.000 0.00 0.00 0.00 4.69
330 331 2.228343 ACCAACTCGTACTTCTTCTCCG 59.772 50.000 0.00 0.00 0.00 4.63
331 332 3.670091 CGACCAACTCGTACTTCTTCTCC 60.670 52.174 0.00 0.00 37.64 3.71
332 333 3.490399 CGACCAACTCGTACTTCTTCTC 58.510 50.000 0.00 0.00 37.64 2.87
333 334 3.555917 CGACCAACTCGTACTTCTTCT 57.444 47.619 0.00 0.00 37.64 2.85
353 354 3.177249 GGTAGCGCACGACGGAAC 61.177 66.667 11.47 0.00 43.93 3.62
354 355 4.424566 GGGTAGCGCACGACGGAA 62.425 66.667 11.47 0.00 43.93 4.30
366 367 4.530857 CTTGGCGAGCCGGGGTAG 62.531 72.222 2.18 0.00 39.42 3.18
375 376 3.121030 CGTGAAGGGCTTGGCGAG 61.121 66.667 0.00 0.00 0.00 5.03
379 380 3.121030 CTCGCGTGAAGGGCTTGG 61.121 66.667 5.77 0.00 0.00 3.61
380 381 3.121030 CCTCGCGTGAAGGGCTTG 61.121 66.667 10.21 0.00 0.00 4.01
384 385 3.589654 TTCTGCCTCGCGTGAAGGG 62.590 63.158 13.61 7.97 0.00 3.95
385 386 2.048222 TTCTGCCTCGCGTGAAGG 60.048 61.111 10.21 8.98 0.00 3.46
386 387 2.734673 GCTTCTGCCTCGCGTGAAG 61.735 63.158 10.21 14.70 41.21 3.02
387 388 2.738521 GCTTCTGCCTCGCGTGAA 60.739 61.111 10.21 5.57 0.00 3.18
388 389 3.921767 CTGCTTCTGCCTCGCGTGA 62.922 63.158 10.21 0.00 38.71 4.35
389 390 3.485431 CTGCTTCTGCCTCGCGTG 61.485 66.667 5.77 2.75 38.71 5.34
391 392 3.706563 TAGCTGCTTCTGCCTCGCG 62.707 63.158 7.79 0.00 38.71 5.87
392 393 1.882167 CTAGCTGCTTCTGCCTCGC 60.882 63.158 7.79 0.00 38.71 5.03
393 394 1.882167 GCTAGCTGCTTCTGCCTCG 60.882 63.158 7.79 0.00 38.71 4.63
394 395 1.523484 GGCTAGCTGCTTCTGCCTC 60.523 63.158 23.99 7.65 42.39 4.70
395 396 2.588989 GGCTAGCTGCTTCTGCCT 59.411 61.111 23.99 0.00 42.39 4.75
396 397 1.523484 GAGGCTAGCTGCTTCTGCC 60.523 63.158 23.91 23.91 43.43 4.85
397 398 1.882167 CGAGGCTAGCTGCTTCTGC 60.882 63.158 15.72 10.29 44.42 4.26
398 399 0.527385 GACGAGGCTAGCTGCTTCTG 60.527 60.000 15.72 0.00 44.42 3.02
399 400 1.813192 GACGAGGCTAGCTGCTTCT 59.187 57.895 15.72 1.91 44.42 2.85
400 401 1.587613 CGACGAGGCTAGCTGCTTC 60.588 63.158 15.72 8.93 43.35 3.86
401 402 2.492090 CGACGAGGCTAGCTGCTT 59.508 61.111 15.72 0.11 42.39 3.91
402 403 4.200283 GCGACGAGGCTAGCTGCT 62.200 66.667 15.72 7.57 42.39 4.24
404 405 3.826754 TGGCGACGAGGCTAGCTG 61.827 66.667 15.72 7.62 46.88 4.24
405 406 3.827898 GTGGCGACGAGGCTAGCT 61.828 66.667 15.72 0.00 46.88 3.32
806 807 8.299990 AGTAACATAGCTACACTCATCTTCTT 57.700 34.615 0.00 0.00 0.00 2.52
916 917 3.361053 CGCAGTTCGTTACTTCTACTGTG 59.639 47.826 0.00 0.00 39.87 3.66
917 918 3.562505 CGCAGTTCGTTACTTCTACTGT 58.437 45.455 0.00 0.00 38.70 3.55
955 959 1.690845 GGATGAGGAGGAGAAGGCTCA 60.691 57.143 0.00 0.00 43.14 4.26
957 961 0.758685 CGGATGAGGAGGAGAAGGCT 60.759 60.000 0.00 0.00 0.00 4.58
977 981 2.369860 GGATGGGATGATGCTAGTGTCA 59.630 50.000 2.38 2.38 0.00 3.58
985 989 2.971676 CCATGGGATGGGATGATGC 58.028 57.895 2.85 0.00 46.86 3.91
1144 1183 0.237761 GGAGACGATAGCGCGTATGT 59.762 55.000 8.43 0.00 45.72 2.29
1175 1323 4.212913 TCTGCTCCATCTCGCCGC 62.213 66.667 0.00 0.00 0.00 6.53
1180 1328 2.499289 TGAAGAACCTCTGCTCCATCTC 59.501 50.000 0.00 0.00 0.00 2.75
1234 1382 9.920946 AAAGATAGATTAATACAGCCAAAAGGA 57.079 29.630 0.00 0.00 0.00 3.36
1257 1424 5.865013 TGCATGCAGATGTCAATTGTAAAAG 59.135 36.000 18.46 0.00 31.50 2.27
1258 1425 5.634439 GTGCATGCAGATGTCAATTGTAAAA 59.366 36.000 23.41 0.00 31.50 1.52
1270 1605 1.087771 TCGCAGAGTGCATGCAGATG 61.088 55.000 23.41 20.03 45.36 2.90
1295 1630 1.841663 TTTCAGGCTTGCTTCGTCGC 61.842 55.000 0.00 0.00 0.00 5.19
1297 1632 0.238553 GGTTTCAGGCTTGCTTCGTC 59.761 55.000 0.00 0.00 0.00 4.20
1354 1696 1.519455 GCCTCCAGTTCATCGTCCG 60.519 63.158 0.00 0.00 0.00 4.79
1355 1697 1.519455 CGCCTCCAGTTCATCGTCC 60.519 63.158 0.00 0.00 0.00 4.79
1357 1699 2.579201 CCGCCTCCAGTTCATCGT 59.421 61.111 0.00 0.00 0.00 3.73
1358 1700 2.892425 GCCGCCTCCAGTTCATCG 60.892 66.667 0.00 0.00 0.00 3.84
1523 1868 0.249120 CTGGTTCGTCCATGGCTACA 59.751 55.000 6.96 0.00 46.12 2.74
1606 1951 0.890996 GGAGAGGTTGGTGCTGTTGG 60.891 60.000 0.00 0.00 0.00 3.77
1695 2043 0.176680 CTGTAGCCGTGCTTGAGGAT 59.823 55.000 3.71 0.00 40.44 3.24
1727 2075 1.999735 TCGTTGGGAGTAGTACGTACG 59.000 52.381 19.49 15.01 36.66 3.67
1731 2079 1.063764 GAGCTCGTTGGGAGTAGTACG 59.936 57.143 0.00 0.00 45.03 3.67
1735 2083 0.888619 TGTGAGCTCGTTGGGAGTAG 59.111 55.000 9.64 0.00 45.03 2.57
1737 2085 1.478510 CTATGTGAGCTCGTTGGGAGT 59.521 52.381 9.64 0.00 45.03 3.85
1738 2086 1.478510 ACTATGTGAGCTCGTTGGGAG 59.521 52.381 9.64 4.09 46.06 4.30
1739 2087 1.476891 GACTATGTGAGCTCGTTGGGA 59.523 52.381 9.64 0.00 0.00 4.37
1740 2088 1.204704 TGACTATGTGAGCTCGTTGGG 59.795 52.381 9.64 1.86 0.00 4.12
1741 2089 2.263077 GTGACTATGTGAGCTCGTTGG 58.737 52.381 9.64 0.75 0.00 3.77
1743 2091 2.820197 TCTGTGACTATGTGAGCTCGTT 59.180 45.455 9.64 0.00 0.00 3.85
1782 2188 2.046283 CACATGCTTGTGTCTTGCAG 57.954 50.000 21.36 0.00 46.68 4.41
1983 2510 1.014564 CGGCCACGAAGAAGAACCTC 61.015 60.000 2.24 0.00 44.60 3.85
1984 2511 1.004918 CGGCCACGAAGAAGAACCT 60.005 57.895 2.24 0.00 44.60 3.50
1986 2513 2.861006 GCGGCCACGAAGAAGAAC 59.139 61.111 2.24 0.00 44.60 3.01
2198 2725 4.539083 AGTTGGCGTGCACGGTGA 62.539 61.111 37.47 9.09 40.23 4.02
2304 2831 3.204827 GCTGAATGACGCGGCCAT 61.205 61.111 10.82 10.26 0.00 4.40
2325 2856 0.905357 ACTTCCTCCACGATCCCAAG 59.095 55.000 0.00 0.00 0.00 3.61
2326 2857 0.613260 CACTTCCTCCACGATCCCAA 59.387 55.000 0.00 0.00 0.00 4.12
2327 2858 0.252057 TCACTTCCTCCACGATCCCA 60.252 55.000 0.00 0.00 0.00 4.37
2328 2859 0.461961 CTCACTTCCTCCACGATCCC 59.538 60.000 0.00 0.00 0.00 3.85
2329 2860 1.135333 GTCTCACTTCCTCCACGATCC 59.865 57.143 0.00 0.00 0.00 3.36
2334 2865 0.528470 CCTCGTCTCACTTCCTCCAC 59.472 60.000 0.00 0.00 0.00 4.02
2377 2908 3.835978 TGGAAACGAGATAAGGGAGACAA 59.164 43.478 0.00 0.00 0.00 3.18
2403 2934 8.433126 CAGTAAAGTGACGAATGGTAAGTAAAG 58.567 37.037 0.00 0.00 0.00 1.85
2446 2977 4.320608 TTCTTTCCTCATGCCAACAAAC 57.679 40.909 0.00 0.00 0.00 2.93
2449 2980 4.161189 TGTTTTTCTTTCCTCATGCCAACA 59.839 37.500 0.00 0.00 0.00 3.33
2454 2985 3.069443 TGGGTGTTTTTCTTTCCTCATGC 59.931 43.478 0.00 0.00 0.00 4.06
2461 2992 7.463544 CAAGATGTTTTGGGTGTTTTTCTTTC 58.536 34.615 0.00 0.00 0.00 2.62
2468 2999 3.450457 TCAGCAAGATGTTTTGGGTGTTT 59.550 39.130 0.00 0.00 0.00 2.83
2486 3017 6.210287 AGTGATAACTTGGTACTACTCAGC 57.790 41.667 0.00 0.00 0.00 4.26
2488 3019 9.470399 TGATAAGTGATAACTTGGTACTACTCA 57.530 33.333 5.64 0.00 0.00 3.41
2519 3070 6.884836 ACAATAAACAGGGATGAAGGAAGTAC 59.115 38.462 0.00 0.00 0.00 2.73
2520 3071 7.027874 ACAATAAACAGGGATGAAGGAAGTA 57.972 36.000 0.00 0.00 0.00 2.24
2521 3072 5.892348 ACAATAAACAGGGATGAAGGAAGT 58.108 37.500 0.00 0.00 0.00 3.01
2554 3105 4.998671 TTTCTTGGTCATGCTGTTTTGA 57.001 36.364 0.00 0.00 0.00 2.69
2577 3128 6.427853 CCAACAAGATGTCTCAATCAAGTACA 59.572 38.462 0.00 0.00 0.00 2.90
2583 3134 7.815840 TTTTACCAACAAGATGTCTCAATCA 57.184 32.000 0.00 0.00 0.00 2.57
2584 3135 8.299570 ACATTTTACCAACAAGATGTCTCAATC 58.700 33.333 0.00 0.00 29.82 2.67
2585 3136 8.181904 ACATTTTACCAACAAGATGTCTCAAT 57.818 30.769 0.00 0.00 29.82 2.57
2586 3137 7.581213 ACATTTTACCAACAAGATGTCTCAA 57.419 32.000 0.00 0.00 29.82 3.02
2587 3138 7.284261 TGAACATTTTACCAACAAGATGTCTCA 59.716 33.333 0.00 0.00 33.46 3.27
2588 3139 7.648142 TGAACATTTTACCAACAAGATGTCTC 58.352 34.615 0.00 0.00 33.46 3.36
2589 3140 7.581213 TGAACATTTTACCAACAAGATGTCT 57.419 32.000 0.00 0.00 33.46 3.41
2592 3143 7.866898 TGACATGAACATTTTACCAACAAGATG 59.133 33.333 0.00 0.00 0.00 2.90
2703 3282 2.505557 GCACAAGCTTCATGGCGC 60.506 61.111 0.00 0.00 37.91 6.53
2704 3283 0.731514 CTTGCACAAGCTTCATGGCG 60.732 55.000 0.00 0.00 42.74 5.69
2711 3290 1.956477 CTACAACCCTTGCACAAGCTT 59.044 47.619 4.82 0.00 42.74 3.74
2730 3309 6.318900 GGCAAAGTTGTATGTAGATTTAGCCT 59.681 38.462 0.00 0.00 32.49 4.58
2733 3312 7.865706 AGGGCAAAGTTGTATGTAGATTTAG 57.134 36.000 0.00 0.00 0.00 1.85
2758 3376 5.104859 TGTGGCATGCAATTAATGAGGAAAT 60.105 36.000 21.36 0.00 0.00 2.17
2769 3387 4.160814 ACAGTGATAATGTGGCATGCAATT 59.839 37.500 21.36 17.18 0.00 2.32
2773 3391 2.033801 GGACAGTGATAATGTGGCATGC 59.966 50.000 9.90 9.90 0.00 4.06
2776 3394 4.030216 TCTAGGACAGTGATAATGTGGCA 58.970 43.478 0.00 0.00 0.00 4.92
2784 3402 4.290093 ACTTGCCATCTAGGACAGTGATA 58.710 43.478 0.00 0.00 41.22 2.15
2798 3418 1.967779 GGGTGTTGGTAAACTTGCCAT 59.032 47.619 0.00 0.00 42.60 4.40
2829 3449 2.932614 CTCAAGTAGGGCATCTTCAACG 59.067 50.000 0.00 0.00 0.00 4.10
2875 3495 1.079127 CACCCGAAGAAGACGCCAT 60.079 57.895 0.00 0.00 0.00 4.40
2898 3518 1.379576 CGGGTAGGGAGTCCGTCTT 60.380 63.158 7.86 0.00 39.04 3.01
2921 3551 0.893270 TGGTCCAAACTCGCCATTGG 60.893 55.000 0.00 0.00 46.03 3.16
2924 3554 1.002134 CCTGGTCCAAACTCGCCAT 60.002 57.895 0.00 0.00 0.00 4.40
2982 3612 0.107066 TCCACCACTACCGATCGCTA 60.107 55.000 10.32 0.00 0.00 4.26
3105 3735 1.831286 GATCATTGGGGCCAGCCAG 60.831 63.158 11.50 0.00 37.98 4.85
3157 3788 2.279517 GCGTACGCCAGATCCCAG 60.280 66.667 29.51 0.00 34.56 4.45
3174 3805 0.028505 CGTGTCGAGGTACCCATACG 59.971 60.000 8.74 9.46 31.40 3.06
3206 3837 3.061848 CCATGACCGGCCAACACC 61.062 66.667 0.00 0.00 0.00 4.16
3260 3892 6.345920 ACACTAGTTTTGACACGAAAAGAG 57.654 37.500 0.00 0.00 0.00 2.85
3261 3893 6.730960 AACACTAGTTTTGACACGAAAAGA 57.269 33.333 0.00 0.00 33.11 2.52
3276 3908 0.688487 TAGGCCGCCAAAACACTAGT 59.312 50.000 13.15 0.00 0.00 2.57
3298 3930 0.250124 CACACTACCGCCACCAAGAA 60.250 55.000 0.00 0.00 0.00 2.52
3312 3944 0.249911 GCTTCCAAGACCGACACACT 60.250 55.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.