Multiple sequence alignment - TraesCS4D01G061400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G061400 chr4D 100.000 5093 0 0 1 5093 37139058 37133966 0.000000e+00 9406.0
1 TraesCS4D01G061400 chr4D 85.465 1204 127 25 2974 4156 37254260 37253084 0.000000e+00 1210.0
2 TraesCS4D01G061400 chr4D 84.993 713 91 14 1637 2336 37262472 37261763 0.000000e+00 710.0
3 TraesCS4D01G061400 chr4D 90.936 342 28 2 4751 5092 363590201 363589863 1.670000e-124 457.0
4 TraesCS4D01G061400 chr4D 86.118 425 43 8 3656 4067 37049758 37049337 1.300000e-120 444.0
5 TraesCS4D01G061400 chr4D 90.909 99 9 0 974 1072 37263339 37263241 3.200000e-27 134.0
6 TraesCS4D01G061400 chr4D 95.122 41 2 0 1534 1574 37137459 37137419 1.180000e-06 65.8
7 TraesCS4D01G061400 chr4D 95.122 41 2 0 1600 1640 37137525 37137485 1.180000e-06 65.8
8 TraesCS4D01G061400 chr4A 94.350 3133 123 18 1632 4746 565041152 565044248 0.000000e+00 4756.0
9 TraesCS4D01G061400 chr4A 84.332 1685 127 58 1 1593 565039503 565041142 0.000000e+00 1522.0
10 TraesCS4D01G061400 chr4A 84.660 1206 133 32 2976 4156 564973380 564974558 0.000000e+00 1155.0
11 TraesCS4D01G061400 chr4A 81.706 1454 169 41 1455 2857 564971700 564973107 0.000000e+00 1122.0
12 TraesCS4D01G061400 chr4A 85.680 419 41 15 3657 4067 565305165 565305572 1.700000e-114 424.0
13 TraesCS4D01G061400 chr4A 88.889 99 11 0 974 1072 564971250 564971348 6.920000e-24 122.0
14 TraesCS4D01G061400 chr4B 88.471 2897 186 59 4 2822 54141847 54139021 0.000000e+00 3363.0
15 TraesCS4D01G061400 chr4B 96.526 1756 59 2 2992 4746 54139026 54137272 0.000000e+00 2904.0
16 TraesCS4D01G061400 chr4B 85.738 1213 129 25 2966 4156 54347367 54346177 0.000000e+00 1242.0
17 TraesCS4D01G061400 chr4B 82.714 1319 139 42 1675 2940 54349277 54347995 0.000000e+00 1090.0
18 TraesCS4D01G061400 chr4B 83.854 576 66 19 3656 4206 54037054 54036481 1.620000e-144 523.0
19 TraesCS4D01G061400 chr4B 90.265 339 31 2 4755 5092 448894989 448894652 4.680000e-120 442.0
20 TraesCS4D01G061400 chr2D 94.277 332 18 1 4762 5093 247053912 247053582 1.640000e-139 507.0
21 TraesCS4D01G061400 chr2A 91.570 344 25 2 4750 5093 297243191 297242852 5.970000e-129 472.0
22 TraesCS4D01G061400 chr5A 90.395 354 28 5 4741 5093 675276173 675275825 1.290000e-125 460.0
23 TraesCS4D01G061400 chr5A 88.630 343 35 3 4751 5093 671553188 671553526 1.020000e-111 414.0
24 TraesCS4D01G061400 chr5A 87.791 344 38 4 4752 5093 219678491 219678832 2.860000e-107 399.0
25 TraesCS4D01G061400 chr7D 89.254 335 33 3 4761 5093 565464326 565463993 2.840000e-112 416.0
26 TraesCS4D01G061400 chr2B 87.283 346 34 7 4752 5093 452783093 452783432 2.220000e-103 387.0
27 TraesCS4D01G061400 chr3A 84.120 233 36 1 2210 2442 145590082 145590313 1.850000e-54 224.0
28 TraesCS4D01G061400 chr1A 83.761 234 35 3 2210 2442 424760505 424760736 8.590000e-53 219.0
29 TraesCS4D01G061400 chr5B 84.038 213 33 1 2230 2442 221838286 221838497 2.400000e-48 204.0
30 TraesCS4D01G061400 chr1B 81.545 233 39 2 2210 2442 304003877 304004105 6.730000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G061400 chr4D 37133966 37139058 5092 True 3179.200000 9406 96.7480 1 5093 3 chr4D.!!$R4 5092
1 TraesCS4D01G061400 chr4D 37253084 37254260 1176 True 1210.000000 1210 85.4650 2974 4156 1 chr4D.!!$R2 1182
2 TraesCS4D01G061400 chr4D 37261763 37263339 1576 True 422.000000 710 87.9510 974 2336 2 chr4D.!!$R5 1362
3 TraesCS4D01G061400 chr4A 565039503 565044248 4745 False 3139.000000 4756 89.3410 1 4746 2 chr4A.!!$F3 4745
4 TraesCS4D01G061400 chr4A 564971250 564974558 3308 False 799.666667 1155 85.0850 974 4156 3 chr4A.!!$F2 3182
5 TraesCS4D01G061400 chr4B 54137272 54141847 4575 True 3133.500000 3363 92.4985 4 4746 2 chr4B.!!$R3 4742
6 TraesCS4D01G061400 chr4B 54346177 54349277 3100 True 1166.000000 1242 84.2260 1675 4156 2 chr4B.!!$R4 2481
7 TraesCS4D01G061400 chr4B 54036481 54037054 573 True 523.000000 523 83.8540 3656 4206 1 chr4B.!!$R1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 985 0.107312 AGGCAATCAGTAGCAGGCAG 60.107 55.0 0.00 0.00 0.0 4.85 F
1610 1873 0.249073 CCTAGGAATCGTCGGTGCAG 60.249 60.0 1.05 0.00 0.0 4.41 F
1611 1874 0.872021 CTAGGAATCGTCGGTGCAGC 60.872 60.0 5.64 5.64 0.0 5.25 F
2477 3175 0.519961 GTGGGTTTATGTGTGGCGAC 59.480 55.0 0.00 0.00 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2228 2922 0.039618 ACCCTGCCATTGGTAACCAG 59.960 55.000 4.26 2.99 33.81 4.00 R
2477 3175 2.634940 AGGATATCCTCCATCACAACCG 59.365 50.000 19.18 0.00 44.77 4.44 R
3231 4608 3.776969 TCTTGTAGACCTCTGCCATGATT 59.223 43.478 0.00 0.00 0.00 2.57 R
4316 5738 0.387494 TCTGCACGCGTCGTATTTCA 60.387 50.000 9.86 0.00 38.32 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 0.941542 CAACACCGTCAACGACCATT 59.058 50.000 3.71 0.00 43.02 3.16
128 129 5.446143 ACTCTCTGTCCACATTCGATATC 57.554 43.478 0.00 0.00 0.00 1.63
131 132 4.520874 TCTCTGTCCACATTCGATATCCTC 59.479 45.833 0.00 0.00 0.00 3.71
151 152 2.445525 TCCTATTAATTGCCACCCTCCC 59.554 50.000 0.00 0.00 0.00 4.30
154 155 0.853586 TTAATTGCCACCCTCCCCCT 60.854 55.000 0.00 0.00 0.00 4.79
223 235 1.451504 CATATCCGGCCTCCAAGCA 59.548 57.895 0.00 0.00 0.00 3.91
231 243 0.883814 GGCCTCCAAGCATGAGATCG 60.884 60.000 0.00 0.00 31.26 3.69
337 352 9.639563 TGTTTGATATTCTCTAATAAATGCCCA 57.360 29.630 0.00 0.00 31.44 5.36
338 353 9.899226 GTTTGATATTCTCTAATAAATGCCCAC 57.101 33.333 0.00 0.00 31.44 4.61
357 373 5.635700 GCCCACTTCAAAAATAAATACGCAA 59.364 36.000 0.00 0.00 0.00 4.85
367 402 2.652941 AAATACGCAAGCAACCCATG 57.347 45.000 0.00 0.00 45.62 3.66
387 422 3.911868 TGAATGGAGCACAAAATTTCCG 58.088 40.909 0.00 0.00 32.27 4.30
447 482 2.029470 GGCAACCCATGAACGAATCAAA 60.029 45.455 0.00 0.00 42.54 2.69
459 494 2.545526 ACGAATCAAAGCCGATATGCAG 59.454 45.455 0.00 0.00 0.00 4.41
494 529 7.644551 CCGCATTCGATATCTTCTACTAATACC 59.355 40.741 0.34 0.00 38.10 2.73
515 554 9.646522 AATACCTGCATATCCTCTACAAAAATT 57.353 29.630 0.00 0.00 0.00 1.82
527 566 5.560724 TCTACAAAAATTCACCCCTCAGAG 58.439 41.667 0.00 0.00 0.00 3.35
558 597 1.440353 CCGCCGCGCTTATAAATGC 60.440 57.895 7.42 0.00 0.00 3.56
674 721 4.478699 CGAAGCCGATATGGATACGTTTA 58.521 43.478 0.00 0.00 42.00 2.01
882 931 4.601084 TCGGAACCAATTATAAAAGGGCA 58.399 39.130 10.32 0.00 0.00 5.36
930 984 0.329261 AAGGCAATCAGTAGCAGGCA 59.671 50.000 0.00 0.00 0.00 4.75
931 985 0.107312 AGGCAATCAGTAGCAGGCAG 60.107 55.000 0.00 0.00 0.00 4.85
932 986 1.722636 GGCAATCAGTAGCAGGCAGC 61.723 60.000 0.00 0.00 46.19 5.25
960 1017 2.048222 TGCTTGCTTCCCGTCGAG 60.048 61.111 0.00 0.00 0.00 4.04
1088 1173 1.326951 TTCGAGATCCCATCGCCACA 61.327 55.000 0.00 0.00 39.98 4.17
1107 1192 3.175724 CTGCTCTTTGCTCGCAGG 58.824 61.111 0.00 0.00 45.47 4.85
1136 1221 2.945008 TGCTGTGAGAAGTCAAACCAAG 59.055 45.455 0.00 0.00 33.27 3.61
1140 1225 5.560966 TGTGAGAAGTCAAACCAAGAAAC 57.439 39.130 0.00 0.00 33.27 2.78
1157 1242 2.754946 AACCTCTCGCGTATCCAAAA 57.245 45.000 5.77 0.00 0.00 2.44
1215 1307 1.904287 TCCAATTTGGTAAGCTGCGT 58.096 45.000 14.98 0.00 39.03 5.24
1294 1441 2.429930 CCAAGGGGTTGCGACAGA 59.570 61.111 6.39 0.00 0.00 3.41
1295 1442 1.672356 CCAAGGGGTTGCGACAGAG 60.672 63.158 6.39 0.00 0.00 3.35
1296 1443 2.032681 AAGGGGTTGCGACAGAGC 59.967 61.111 6.39 0.00 37.71 4.09
1297 1444 3.553095 AAGGGGTTGCGACAGAGCC 62.553 63.158 6.39 0.00 36.02 4.70
1389 1543 7.051000 GCCTTCCTCTGATACTAAACTTGATT 58.949 38.462 0.00 0.00 0.00 2.57
1390 1544 7.554476 GCCTTCCTCTGATACTAAACTTGATTT 59.446 37.037 0.00 0.00 0.00 2.17
1447 1603 3.142174 CGATCCCTTTCTTTCTATGGGC 58.858 50.000 0.00 0.00 37.83 5.36
1453 1709 1.459450 TTCTTTCTATGGGCGGCAAC 58.541 50.000 12.47 0.00 0.00 4.17
1485 1748 0.521291 TGCTACGCAATTGGCTGAAC 59.479 50.000 7.72 0.00 41.67 3.18
1520 1783 7.062371 TGTTTGCTTTAACATGTGTTTGTACAC 59.938 33.333 0.00 1.61 42.31 2.90
1605 1868 4.595762 TTTTATCCCTAGGAATCGTCGG 57.404 45.455 11.48 0.00 34.34 4.79
1606 1869 2.965671 TATCCCTAGGAATCGTCGGT 57.034 50.000 11.48 0.00 34.34 4.69
1607 1870 1.329256 ATCCCTAGGAATCGTCGGTG 58.671 55.000 11.48 0.00 34.34 4.94
1608 1871 1.067582 CCCTAGGAATCGTCGGTGC 59.932 63.158 11.48 0.00 0.00 5.01
1610 1873 0.249073 CCTAGGAATCGTCGGTGCAG 60.249 60.000 1.05 0.00 0.00 4.41
1611 1874 0.872021 CTAGGAATCGTCGGTGCAGC 60.872 60.000 5.64 5.64 0.00 5.25
1612 1875 1.600511 TAGGAATCGTCGGTGCAGCA 61.601 55.000 17.33 0.00 0.00 4.41
1613 1876 2.456119 GGAATCGTCGGTGCAGCAG 61.456 63.158 17.33 8.96 0.00 4.24
1614 1877 2.434884 AATCGTCGGTGCAGCAGG 60.435 61.111 17.33 8.91 0.00 4.85
1625 1888 2.270205 CAGCAGGGCGAGACCATT 59.730 61.111 0.00 0.00 42.05 3.16
1626 1889 1.817099 CAGCAGGGCGAGACCATTC 60.817 63.158 0.00 0.00 42.05 2.67
1627 1890 2.514824 GCAGGGCGAGACCATTCC 60.515 66.667 0.00 0.00 42.05 3.01
1628 1891 2.190578 CAGGGCGAGACCATTCCC 59.809 66.667 0.00 0.00 42.05 3.97
1629 1892 2.041265 AGGGCGAGACCATTCCCT 59.959 61.111 0.00 0.00 43.98 4.20
1630 1893 1.048724 CAGGGCGAGACCATTCCCTA 61.049 60.000 0.00 0.00 46.89 3.53
1656 2320 9.950496 AGACATCATCTTCTATTGTTTGTACTT 57.050 29.630 0.00 0.00 31.62 2.24
1779 2454 3.247442 CCTCGCGAATTACACTGTACAA 58.753 45.455 11.33 0.00 0.00 2.41
1792 2469 3.315191 CACTGTACAAAACACCCTCTTGG 59.685 47.826 0.00 0.00 41.37 3.61
1812 2489 2.096218 GGTCTTGTTGTTGTCATCGAGC 60.096 50.000 0.00 0.00 0.00 5.03
1814 2491 2.543848 TCTTGTTGTTGTCATCGAGCAC 59.456 45.455 0.00 0.00 0.00 4.40
1816 2493 1.225855 GTTGTTGTCATCGAGCACCA 58.774 50.000 0.00 0.00 0.00 4.17
1944 2625 3.443976 GTGTTCGCACCAAAACTCATTT 58.556 40.909 0.00 0.00 42.08 2.32
2087 2778 6.674066 ACATTGTTTTAATTACACTGACCCG 58.326 36.000 12.51 0.00 32.44 5.28
2175 2869 6.947464 AGTCTATGCACACTACCTTACATTT 58.053 36.000 0.00 0.00 0.00 2.32
2222 2916 4.096081 ACAATTGAAGATGCTCAAGCTAGC 59.904 41.667 13.59 6.62 38.66 3.42
2228 2922 2.102252 AGATGCTCAAGCTAGCCTGTAC 59.898 50.000 12.13 6.27 42.05 2.90
2350 3044 2.052782 TGCACGATCTGCCTACTCTA 57.947 50.000 12.62 0.00 46.51 2.43
2352 3046 3.751518 TGCACGATCTGCCTACTCTATA 58.248 45.455 12.62 0.00 46.51 1.31
2405 3103 1.672881 CTTACATAACCAGCCTGCTGC 59.327 52.381 13.63 0.00 42.35 5.25
2477 3175 0.519961 GTGGGTTTATGTGTGGCGAC 59.480 55.000 0.00 0.00 0.00 5.19
2569 3267 7.405228 AGGTATAGCTAACTCCCTACTTACT 57.595 40.000 1.70 0.00 0.00 2.24
2570 3268 7.232910 AGGTATAGCTAACTCCCTACTTACTG 58.767 42.308 1.70 0.00 0.00 2.74
2571 3269 6.433716 GGTATAGCTAACTCCCTACTTACTGG 59.566 46.154 0.00 0.00 0.00 4.00
2572 3270 4.334208 AGCTAACTCCCTACTTACTGGT 57.666 45.455 0.00 0.00 0.00 4.00
2573 3271 4.685807 AGCTAACTCCCTACTTACTGGTT 58.314 43.478 0.00 0.00 0.00 3.67
2574 3272 5.835582 AGCTAACTCCCTACTTACTGGTTA 58.164 41.667 0.00 0.00 0.00 2.85
2575 3273 5.655974 AGCTAACTCCCTACTTACTGGTTAC 59.344 44.000 0.00 0.00 0.00 2.50
2816 3560 6.314896 AGCTCAGTTAGTGCTTGTATCATTTC 59.685 38.462 0.00 0.00 44.16 2.17
2948 3719 7.961326 AATGGCTCTGTTTCAAATATAGGTT 57.039 32.000 0.00 0.00 0.00 3.50
3188 4565 4.359706 CAAGTTTGGGAGGAAAAGAAACG 58.640 43.478 0.00 0.00 32.85 3.60
3231 4608 5.939883 CCAAGTAAACTCTGATCCACATGAA 59.060 40.000 0.00 0.00 0.00 2.57
3354 4731 2.545742 GGCTGTCAAAATGTTGGTGGAC 60.546 50.000 0.00 0.00 35.29 4.02
3468 4845 7.509546 AGAAAGACCATGACAGTAGAAGAAAA 58.490 34.615 0.00 0.00 0.00 2.29
3469 4846 8.160106 AGAAAGACCATGACAGTAGAAGAAAAT 58.840 33.333 0.00 0.00 0.00 1.82
3774 5169 1.068741 CTGGCGAGGATTACTGGGTAC 59.931 57.143 0.00 0.00 0.00 3.34
3979 5390 3.560896 AGTTTTGGTTTGTGATGCATTGC 59.439 39.130 0.00 0.46 0.00 3.56
4068 5479 2.270352 TGCCCTCGACAAAGAACATT 57.730 45.000 0.00 0.00 0.00 2.71
4099 5521 3.121113 CGCCTTCGCAATTTAAAGTTTGG 59.879 43.478 0.00 0.00 34.03 3.28
4316 5738 3.069079 AGCTGAGCTGTGTTCATTCAT 57.931 42.857 5.97 0.00 37.57 2.57
4380 5802 4.677182 AGAAAAACAACCCCTCATATGCT 58.323 39.130 0.00 0.00 0.00 3.79
4427 5849 1.607148 GTGGGACTAAATATTGCGCCC 59.393 52.381 4.18 8.32 34.67 6.13
4457 5879 4.058817 GCAATACTAATGGACCTTCGAGG 58.941 47.826 0.00 0.03 42.49 4.63
4520 5942 6.463995 AAACTTCAACAGAAACCTATGCAA 57.536 33.333 0.00 0.00 0.00 4.08
4653 6076 7.449247 AGGTATAGGAGAATTTTGCTCATCTC 58.551 38.462 0.00 0.00 38.04 2.75
4657 6080 3.311048 GGAGAATTTTGCTCATCTCCGAC 59.689 47.826 5.03 0.00 46.04 4.79
4664 6087 1.824852 TGCTCATCTCCGACAGCTTAA 59.175 47.619 0.00 0.00 32.76 1.85
4776 6201 3.750501 TTGGAAAAGGAGGATTACCCC 57.249 47.619 0.00 0.00 36.73 4.95
4777 6202 1.927371 TGGAAAAGGAGGATTACCCCC 59.073 52.381 0.00 0.00 36.73 5.40
4778 6203 1.133884 GGAAAAGGAGGATTACCCCCG 60.134 57.143 0.00 0.00 36.73 5.73
4779 6204 0.924090 AAAAGGAGGATTACCCCCGG 59.076 55.000 0.00 0.00 36.73 5.73
4780 6205 0.045162 AAAGGAGGATTACCCCCGGA 59.955 55.000 0.73 0.00 36.73 5.14
4781 6206 0.693430 AAGGAGGATTACCCCCGGAC 60.693 60.000 0.73 0.00 36.73 4.79
4782 6207 1.074699 GGAGGATTACCCCCGGACT 60.075 63.158 0.73 0.00 36.73 3.85
4783 6208 1.120184 GGAGGATTACCCCCGGACTC 61.120 65.000 0.73 0.00 36.73 3.36
4784 6209 0.105607 GAGGATTACCCCCGGACTCT 60.106 60.000 0.73 0.00 36.73 3.24
4785 6210 0.398664 AGGATTACCCCCGGACTCTG 60.399 60.000 0.73 0.00 36.73 3.35
4786 6211 1.446366 GATTACCCCCGGACTCTGC 59.554 63.158 0.73 0.00 0.00 4.26
4787 6212 1.306654 ATTACCCCCGGACTCTGCA 60.307 57.895 0.73 0.00 0.00 4.41
4788 6213 0.694444 ATTACCCCCGGACTCTGCAT 60.694 55.000 0.73 0.00 0.00 3.96
4789 6214 1.335132 TTACCCCCGGACTCTGCATC 61.335 60.000 0.73 0.00 0.00 3.91
4790 6215 3.866582 CCCCCGGACTCTGCATCC 61.867 72.222 0.73 0.00 0.00 3.51
4791 6216 3.083349 CCCCGGACTCTGCATCCA 61.083 66.667 0.73 0.00 35.83 3.41
4792 6217 2.669133 CCCCGGACTCTGCATCCAA 61.669 63.158 0.73 0.00 35.83 3.53
4793 6218 1.299648 CCCGGACTCTGCATCCAAA 59.700 57.895 0.73 0.00 35.83 3.28
4794 6219 0.322456 CCCGGACTCTGCATCCAAAA 60.322 55.000 0.73 0.00 35.83 2.44
4795 6220 1.089920 CCGGACTCTGCATCCAAAAG 58.910 55.000 0.00 0.00 35.83 2.27
4796 6221 1.339055 CCGGACTCTGCATCCAAAAGA 60.339 52.381 0.00 0.00 35.83 2.52
4797 6222 2.636830 CGGACTCTGCATCCAAAAGAT 58.363 47.619 5.70 0.00 35.83 2.40
4805 6230 1.847818 CATCCAAAAGATGCATGCGG 58.152 50.000 14.09 6.18 45.76 5.69
4806 6231 0.103572 ATCCAAAAGATGCATGCGGC 59.896 50.000 14.09 7.38 45.13 6.53
4807 6232 1.519898 CCAAAAGATGCATGCGGCC 60.520 57.895 14.09 4.40 43.89 6.13
4808 6233 1.215912 CAAAAGATGCATGCGGCCA 59.784 52.632 14.09 0.00 43.89 5.36
4809 6234 0.179094 CAAAAGATGCATGCGGCCAT 60.179 50.000 14.09 0.00 43.89 4.40
4810 6235 1.067364 CAAAAGATGCATGCGGCCATA 59.933 47.619 14.09 0.00 43.89 2.74
4811 6236 1.624336 AAAGATGCATGCGGCCATAT 58.376 45.000 14.09 0.00 43.89 1.78
4812 6237 1.624336 AAGATGCATGCGGCCATATT 58.376 45.000 14.09 1.30 43.89 1.28
4813 6238 2.495155 AGATGCATGCGGCCATATTA 57.505 45.000 14.09 0.00 43.89 0.98
4814 6239 3.008835 AGATGCATGCGGCCATATTAT 57.991 42.857 14.09 0.00 43.89 1.28
4815 6240 3.359033 AGATGCATGCGGCCATATTATT 58.641 40.909 14.09 0.00 43.89 1.40
4816 6241 4.525996 AGATGCATGCGGCCATATTATTA 58.474 39.130 14.09 0.00 43.89 0.98
4817 6242 4.949238 AGATGCATGCGGCCATATTATTAA 59.051 37.500 14.09 0.00 43.89 1.40
4818 6243 5.418524 AGATGCATGCGGCCATATTATTAAA 59.581 36.000 14.09 0.00 43.89 1.52
4819 6244 5.459536 TGCATGCGGCCATATTATTAAAA 57.540 34.783 14.09 0.00 43.89 1.52
4820 6245 5.847304 TGCATGCGGCCATATTATTAAAAA 58.153 33.333 14.09 0.00 43.89 1.94
4839 6264 5.989551 AAAAAGTGGCAGCAAATAACAAG 57.010 34.783 0.00 0.00 0.00 3.16
4840 6265 3.665745 AAGTGGCAGCAAATAACAAGG 57.334 42.857 0.00 0.00 0.00 3.61
4841 6266 2.597455 AGTGGCAGCAAATAACAAGGT 58.403 42.857 0.00 0.00 0.00 3.50
4842 6267 2.558359 AGTGGCAGCAAATAACAAGGTC 59.442 45.455 0.00 0.00 0.00 3.85
4843 6268 2.558359 GTGGCAGCAAATAACAAGGTCT 59.442 45.455 0.00 0.00 0.00 3.85
4844 6269 2.557924 TGGCAGCAAATAACAAGGTCTG 59.442 45.455 0.00 0.00 0.00 3.51
4845 6270 2.819608 GGCAGCAAATAACAAGGTCTGA 59.180 45.455 0.00 0.00 0.00 3.27
4846 6271 3.445096 GGCAGCAAATAACAAGGTCTGAT 59.555 43.478 0.00 0.00 0.00 2.90
4847 6272 4.640201 GGCAGCAAATAACAAGGTCTGATA 59.360 41.667 0.00 0.00 0.00 2.15
4848 6273 5.300286 GGCAGCAAATAACAAGGTCTGATAT 59.700 40.000 0.00 0.00 0.00 1.63
4849 6274 6.433766 GCAGCAAATAACAAGGTCTGATATC 58.566 40.000 0.00 0.00 0.00 1.63
4850 6275 6.514048 GCAGCAAATAACAAGGTCTGATATCC 60.514 42.308 0.00 0.00 0.00 2.59
4851 6276 6.543465 CAGCAAATAACAAGGTCTGATATCCA 59.457 38.462 0.00 0.00 0.00 3.41
4852 6277 7.067372 CAGCAAATAACAAGGTCTGATATCCAA 59.933 37.037 0.00 0.00 0.00 3.53
4853 6278 7.284034 AGCAAATAACAAGGTCTGATATCCAAG 59.716 37.037 0.00 0.00 0.00 3.61
4854 6279 7.067494 GCAAATAACAAGGTCTGATATCCAAGT 59.933 37.037 0.00 0.00 0.00 3.16
4855 6280 9.613428 CAAATAACAAGGTCTGATATCCAAGTA 57.387 33.333 0.00 0.00 0.00 2.24
4856 6281 9.614792 AAATAACAAGGTCTGATATCCAAGTAC 57.385 33.333 0.00 0.00 0.00 2.73
4857 6282 6.620877 AACAAGGTCTGATATCCAAGTACA 57.379 37.500 0.00 0.00 0.00 2.90
4858 6283 6.620877 ACAAGGTCTGATATCCAAGTACAA 57.379 37.500 0.00 0.00 0.00 2.41
4859 6284 6.407202 ACAAGGTCTGATATCCAAGTACAAC 58.593 40.000 0.00 0.00 0.00 3.32
4860 6285 6.213600 ACAAGGTCTGATATCCAAGTACAACT 59.786 38.462 0.00 0.00 0.00 3.16
4861 6286 6.472686 AGGTCTGATATCCAAGTACAACTC 57.527 41.667 0.00 0.00 0.00 3.01
4862 6287 5.067936 AGGTCTGATATCCAAGTACAACTCG 59.932 44.000 0.00 0.00 0.00 4.18
4863 6288 4.740695 GTCTGATATCCAAGTACAACTCGC 59.259 45.833 0.00 0.00 0.00 5.03
4864 6289 4.401202 TCTGATATCCAAGTACAACTCGCA 59.599 41.667 0.00 0.00 0.00 5.10
4865 6290 5.079689 TGATATCCAAGTACAACTCGCAA 57.920 39.130 0.00 0.00 0.00 4.85
4866 6291 5.483811 TGATATCCAAGTACAACTCGCAAA 58.516 37.500 0.00 0.00 0.00 3.68
4867 6292 5.350365 TGATATCCAAGTACAACTCGCAAAC 59.650 40.000 0.00 0.00 0.00 2.93
4868 6293 1.862201 TCCAAGTACAACTCGCAAACG 59.138 47.619 0.00 0.00 42.01 3.60
4869 6294 1.070175 CCAAGTACAACTCGCAAACGG 60.070 52.381 0.00 0.00 40.63 4.44
4870 6295 1.862201 CAAGTACAACTCGCAAACGGA 59.138 47.619 0.00 0.00 40.63 4.69
4871 6296 1.779569 AGTACAACTCGCAAACGGAG 58.220 50.000 0.00 0.00 40.63 4.63
4872 6297 0.163146 GTACAACTCGCAAACGGAGC 59.837 55.000 0.00 0.00 40.63 4.70
4873 6298 0.249531 TACAACTCGCAAACGGAGCA 60.250 50.000 0.00 0.00 40.63 4.26
4874 6299 1.092921 ACAACTCGCAAACGGAGCAA 61.093 50.000 0.00 0.00 40.63 3.91
4875 6300 0.028770 CAACTCGCAAACGGAGCAAA 59.971 50.000 0.00 0.00 40.63 3.68
4876 6301 0.307760 AACTCGCAAACGGAGCAAAG 59.692 50.000 0.00 0.00 40.63 2.77
4877 6302 0.531974 ACTCGCAAACGGAGCAAAGA 60.532 50.000 0.00 0.00 40.63 2.52
4878 6303 0.164647 CTCGCAAACGGAGCAAAGAG 59.835 55.000 0.00 0.00 40.63 2.85
4879 6304 0.249699 TCGCAAACGGAGCAAAGAGA 60.250 50.000 0.00 0.00 40.63 3.10
4880 6305 0.586319 CGCAAACGGAGCAAAGAGAA 59.414 50.000 0.00 0.00 34.97 2.87
4881 6306 1.002900 CGCAAACGGAGCAAAGAGAAA 60.003 47.619 0.00 0.00 34.97 2.52
4882 6307 2.540769 CGCAAACGGAGCAAAGAGAAAA 60.541 45.455 0.00 0.00 34.97 2.29
4883 6308 3.443976 GCAAACGGAGCAAAGAGAAAAA 58.556 40.909 0.00 0.00 0.00 1.94
4884 6309 4.051237 GCAAACGGAGCAAAGAGAAAAAT 58.949 39.130 0.00 0.00 0.00 1.82
4885 6310 4.084900 GCAAACGGAGCAAAGAGAAAAATG 60.085 41.667 0.00 0.00 0.00 2.32
4886 6311 5.280945 CAAACGGAGCAAAGAGAAAAATGA 58.719 37.500 0.00 0.00 0.00 2.57
4887 6312 5.514274 AACGGAGCAAAGAGAAAAATGAA 57.486 34.783 0.00 0.00 0.00 2.57
4888 6313 5.514274 ACGGAGCAAAGAGAAAAATGAAA 57.486 34.783 0.00 0.00 0.00 2.69
4889 6314 5.901552 ACGGAGCAAAGAGAAAAATGAAAA 58.098 33.333 0.00 0.00 0.00 2.29
4890 6315 5.748630 ACGGAGCAAAGAGAAAAATGAAAAC 59.251 36.000 0.00 0.00 0.00 2.43
4891 6316 5.748152 CGGAGCAAAGAGAAAAATGAAAACA 59.252 36.000 0.00 0.00 0.00 2.83
4892 6317 6.255453 CGGAGCAAAGAGAAAAATGAAAACAA 59.745 34.615 0.00 0.00 0.00 2.83
4893 6318 7.201513 CGGAGCAAAGAGAAAAATGAAAACAAA 60.202 33.333 0.00 0.00 0.00 2.83
4894 6319 8.118607 GGAGCAAAGAGAAAAATGAAAACAAAG 58.881 33.333 0.00 0.00 0.00 2.77
4895 6320 8.552083 AGCAAAGAGAAAAATGAAAACAAAGT 57.448 26.923 0.00 0.00 0.00 2.66
4896 6321 9.651913 AGCAAAGAGAAAAATGAAAACAAAGTA 57.348 25.926 0.00 0.00 0.00 2.24
4907 6332 9.476202 AAATGAAAACAAAGTAAAGTCATAGCC 57.524 29.630 0.00 0.00 0.00 3.93
4908 6333 7.575414 TGAAAACAAAGTAAAGTCATAGCCA 57.425 32.000 0.00 0.00 0.00 4.75
4909 6334 7.422399 TGAAAACAAAGTAAAGTCATAGCCAC 58.578 34.615 0.00 0.00 0.00 5.01
4910 6335 6.952773 AAACAAAGTAAAGTCATAGCCACA 57.047 33.333 0.00 0.00 0.00 4.17
4911 6336 6.952773 AACAAAGTAAAGTCATAGCCACAA 57.047 33.333 0.00 0.00 0.00 3.33
4912 6337 6.313744 ACAAAGTAAAGTCATAGCCACAAC 57.686 37.500 0.00 0.00 0.00 3.32
4913 6338 5.240844 ACAAAGTAAAGTCATAGCCACAACC 59.759 40.000 0.00 0.00 0.00 3.77
4914 6339 3.596214 AGTAAAGTCATAGCCACAACCG 58.404 45.455 0.00 0.00 0.00 4.44
4915 6340 1.821216 AAAGTCATAGCCACAACCGG 58.179 50.000 0.00 0.00 0.00 5.28
4923 6348 3.849064 CCACAACCGGCTGGAAAA 58.151 55.556 21.41 0.00 39.21 2.29
4924 6349 2.350738 CCACAACCGGCTGGAAAAT 58.649 52.632 21.41 0.00 39.21 1.82
4925 6350 1.540267 CCACAACCGGCTGGAAAATA 58.460 50.000 21.41 0.00 39.21 1.40
4926 6351 1.472480 CCACAACCGGCTGGAAAATAG 59.528 52.381 21.41 3.41 39.21 1.73
4927 6352 1.472480 CACAACCGGCTGGAAAATAGG 59.528 52.381 21.41 1.53 39.21 2.57
4928 6353 1.353022 ACAACCGGCTGGAAAATAGGA 59.647 47.619 21.41 0.00 39.21 2.94
4929 6354 1.743394 CAACCGGCTGGAAAATAGGAC 59.257 52.381 21.41 0.00 39.21 3.85
4930 6355 0.988832 ACCGGCTGGAAAATAGGACA 59.011 50.000 21.41 0.00 39.21 4.02
4931 6356 1.353022 ACCGGCTGGAAAATAGGACAA 59.647 47.619 21.41 0.00 39.21 3.18
4932 6357 2.224917 ACCGGCTGGAAAATAGGACAAA 60.225 45.455 21.41 0.00 39.21 2.83
4933 6358 2.423538 CCGGCTGGAAAATAGGACAAAG 59.576 50.000 5.28 0.00 37.49 2.77
4934 6359 3.081804 CGGCTGGAAAATAGGACAAAGT 58.918 45.455 0.00 0.00 0.00 2.66
4935 6360 3.119849 CGGCTGGAAAATAGGACAAAGTG 60.120 47.826 0.00 0.00 0.00 3.16
4936 6361 4.079253 GGCTGGAAAATAGGACAAAGTGA 58.921 43.478 0.00 0.00 0.00 3.41
4937 6362 4.082733 GGCTGGAAAATAGGACAAAGTGAC 60.083 45.833 0.00 0.00 0.00 3.67
4938 6363 4.762251 GCTGGAAAATAGGACAAAGTGACT 59.238 41.667 0.00 0.00 0.00 3.41
4939 6364 5.938125 GCTGGAAAATAGGACAAAGTGACTA 59.062 40.000 0.00 0.00 0.00 2.59
4940 6365 6.430000 GCTGGAAAATAGGACAAAGTGACTAA 59.570 38.462 0.00 0.00 0.00 2.24
4941 6366 7.040686 GCTGGAAAATAGGACAAAGTGACTAAA 60.041 37.037 0.00 0.00 0.00 1.85
4942 6367 8.161699 TGGAAAATAGGACAAAGTGACTAAAC 57.838 34.615 0.00 0.00 0.00 2.01
4943 6368 7.776030 TGGAAAATAGGACAAAGTGACTAAACA 59.224 33.333 0.00 0.00 0.00 2.83
4944 6369 8.074370 GGAAAATAGGACAAAGTGACTAAACAC 58.926 37.037 0.00 0.00 40.60 3.32
4945 6370 7.506328 AAATAGGACAAAGTGACTAAACACC 57.494 36.000 0.00 0.00 41.12 4.16
4946 6371 4.772886 AGGACAAAGTGACTAAACACCT 57.227 40.909 0.00 0.00 41.12 4.00
4947 6372 5.881923 AGGACAAAGTGACTAAACACCTA 57.118 39.130 0.00 0.00 41.12 3.08
4948 6373 6.435292 AGGACAAAGTGACTAAACACCTAT 57.565 37.500 0.00 0.00 41.12 2.57
4949 6374 6.465084 AGGACAAAGTGACTAAACACCTATC 58.535 40.000 0.00 0.00 41.12 2.08
4950 6375 5.642491 GGACAAAGTGACTAAACACCTATCC 59.358 44.000 0.00 0.00 41.12 2.59
4951 6376 6.435292 ACAAAGTGACTAAACACCTATCCT 57.565 37.500 0.00 0.00 41.12 3.24
4952 6377 7.310237 GGACAAAGTGACTAAACACCTATCCTA 60.310 40.741 0.00 0.00 41.12 2.94
4953 6378 8.147244 ACAAAGTGACTAAACACCTATCCTAT 57.853 34.615 0.00 0.00 41.12 2.57
4954 6379 8.603304 ACAAAGTGACTAAACACCTATCCTATT 58.397 33.333 0.00 0.00 41.12 1.73
4958 6383 9.656323 AGTGACTAAACACCTATCCTATTATGA 57.344 33.333 0.00 0.00 41.12 2.15
4959 6384 9.915629 GTGACTAAACACCTATCCTATTATGAG 57.084 37.037 0.00 0.00 35.07 2.90
4960 6385 9.877222 TGACTAAACACCTATCCTATTATGAGA 57.123 33.333 0.00 0.00 0.00 3.27
4964 6389 6.458232 ACACCTATCCTATTATGAGATCGC 57.542 41.667 0.00 0.00 0.00 4.58
4965 6390 5.361285 ACACCTATCCTATTATGAGATCGCC 59.639 44.000 0.00 0.00 0.00 5.54
4966 6391 5.360999 CACCTATCCTATTATGAGATCGCCA 59.639 44.000 0.00 0.00 0.00 5.69
4967 6392 6.041409 CACCTATCCTATTATGAGATCGCCAT 59.959 42.308 8.36 8.36 0.00 4.40
4968 6393 6.266558 ACCTATCCTATTATGAGATCGCCATC 59.733 42.308 6.87 0.00 0.00 3.51
4969 6394 5.543507 ATCCTATTATGAGATCGCCATCC 57.456 43.478 6.87 0.00 0.00 3.51
4970 6395 4.352893 TCCTATTATGAGATCGCCATCCA 58.647 43.478 6.87 0.00 0.00 3.41
4971 6396 4.777366 TCCTATTATGAGATCGCCATCCAA 59.223 41.667 6.87 0.00 0.00 3.53
4972 6397 5.248248 TCCTATTATGAGATCGCCATCCAAA 59.752 40.000 6.87 0.00 0.00 3.28
4973 6398 5.352569 CCTATTATGAGATCGCCATCCAAAC 59.647 44.000 6.87 0.00 0.00 2.93
4974 6399 1.972872 ATGAGATCGCCATCCAAACC 58.027 50.000 0.00 0.00 0.00 3.27
4975 6400 0.461870 TGAGATCGCCATCCAAACCG 60.462 55.000 0.00 0.00 0.00 4.44
4976 6401 1.153168 AGATCGCCATCCAAACCGG 60.153 57.895 0.00 0.00 0.00 5.28
4977 6402 1.451387 GATCGCCATCCAAACCGGT 60.451 57.895 0.00 0.00 35.57 5.28
4978 6403 1.001393 ATCGCCATCCAAACCGGTT 60.001 52.632 15.86 15.86 35.57 4.44
4979 6404 1.312371 ATCGCCATCCAAACCGGTTG 61.312 55.000 23.08 14.70 36.94 3.77
4980 6405 1.969064 CGCCATCCAAACCGGTTGA 60.969 57.895 23.08 15.50 39.87 3.18
4981 6406 1.519751 CGCCATCCAAACCGGTTGAA 61.520 55.000 23.08 9.90 39.87 2.69
4982 6407 0.243636 GCCATCCAAACCGGTTGAAG 59.756 55.000 23.08 13.88 39.87 3.02
4983 6408 1.904287 CCATCCAAACCGGTTGAAGA 58.096 50.000 23.08 17.89 39.87 2.87
4984 6409 2.446435 CCATCCAAACCGGTTGAAGAT 58.554 47.619 23.08 19.33 39.87 2.40
4985 6410 3.616219 CCATCCAAACCGGTTGAAGATA 58.384 45.455 23.08 4.03 39.87 1.98
4986 6411 3.627577 CCATCCAAACCGGTTGAAGATAG 59.372 47.826 23.08 12.36 39.87 2.08
4987 6412 2.706890 TCCAAACCGGTTGAAGATAGC 58.293 47.619 23.08 0.00 39.87 2.97
4988 6413 1.743394 CCAAACCGGTTGAAGATAGCC 59.257 52.381 23.08 0.00 39.87 3.93
4989 6414 1.743394 CAAACCGGTTGAAGATAGCCC 59.257 52.381 23.08 0.00 39.87 5.19
4990 6415 0.107848 AACCGGTTGAAGATAGCCCG 60.108 55.000 21.56 0.00 38.39 6.13
4991 6416 1.262640 ACCGGTTGAAGATAGCCCGT 61.263 55.000 0.00 0.00 36.98 5.28
4992 6417 0.810031 CCGGTTGAAGATAGCCCGTG 60.810 60.000 0.00 0.00 36.98 4.94
4993 6418 1.429148 CGGTTGAAGATAGCCCGTGC 61.429 60.000 0.00 0.00 34.10 5.34
5003 6428 3.221222 GCCCGTGCTACCATCTCT 58.779 61.111 0.00 0.00 33.53 3.10
5004 6429 1.522569 GCCCGTGCTACCATCTCTT 59.477 57.895 0.00 0.00 33.53 2.85
5005 6430 0.750850 GCCCGTGCTACCATCTCTTA 59.249 55.000 0.00 0.00 33.53 2.10
5006 6431 1.344763 GCCCGTGCTACCATCTCTTAT 59.655 52.381 0.00 0.00 33.53 1.73
5007 6432 2.224305 GCCCGTGCTACCATCTCTTATT 60.224 50.000 0.00 0.00 33.53 1.40
5008 6433 3.393800 CCCGTGCTACCATCTCTTATTG 58.606 50.000 0.00 0.00 0.00 1.90
5009 6434 3.393800 CCGTGCTACCATCTCTTATTGG 58.606 50.000 0.00 0.00 39.02 3.16
5011 6436 4.442706 CGTGCTACCATCTCTTATTGGTT 58.557 43.478 0.00 0.00 43.73 3.67
5012 6437 4.271049 CGTGCTACCATCTCTTATTGGTTG 59.729 45.833 0.00 0.00 43.73 3.77
5015 6440 5.741388 CTACCATCTCTTATTGGTTGCAC 57.259 43.478 0.00 0.00 43.73 4.57
5016 6441 3.356290 ACCATCTCTTATTGGTTGCACC 58.644 45.455 0.00 0.00 43.73 5.01
5017 6442 2.689983 CCATCTCTTATTGGTTGCACCC 59.310 50.000 0.00 0.00 37.50 4.61
5018 6443 3.355378 CATCTCTTATTGGTTGCACCCA 58.645 45.455 0.00 0.00 37.50 4.51
5019 6444 3.071874 TCTCTTATTGGTTGCACCCAG 57.928 47.619 2.20 0.00 37.50 4.45
5020 6445 2.375174 TCTCTTATTGGTTGCACCCAGT 59.625 45.455 2.20 2.77 37.50 4.00
5021 6446 3.585289 TCTCTTATTGGTTGCACCCAGTA 59.415 43.478 2.20 1.59 37.50 2.74
5022 6447 4.042311 TCTCTTATTGGTTGCACCCAGTAA 59.958 41.667 15.83 15.83 37.50 2.24
5023 6448 4.076394 TCTTATTGGTTGCACCCAGTAAC 58.924 43.478 13.26 0.00 41.48 2.50
5029 6454 3.025287 GTTGCACCCAGTAACCAAATG 57.975 47.619 0.00 0.00 36.91 2.32
5030 6455 0.965439 TGCACCCAGTAACCAAATGC 59.035 50.000 0.00 0.00 0.00 3.56
5031 6456 1.256812 GCACCCAGTAACCAAATGCT 58.743 50.000 0.00 0.00 0.00 3.79
5032 6457 1.202348 GCACCCAGTAACCAAATGCTC 59.798 52.381 0.00 0.00 0.00 4.26
5033 6458 1.818674 CACCCAGTAACCAAATGCTCC 59.181 52.381 0.00 0.00 0.00 4.70
5034 6459 1.272480 ACCCAGTAACCAAATGCTCCC 60.272 52.381 0.00 0.00 0.00 4.30
5035 6460 1.005924 CCCAGTAACCAAATGCTCCCT 59.994 52.381 0.00 0.00 0.00 4.20
5036 6461 2.094675 CCAGTAACCAAATGCTCCCTG 58.905 52.381 0.00 0.00 0.00 4.45
5037 6462 2.555227 CCAGTAACCAAATGCTCCCTGT 60.555 50.000 0.00 0.00 0.00 4.00
5038 6463 3.308117 CCAGTAACCAAATGCTCCCTGTA 60.308 47.826 0.00 0.00 0.00 2.74
5039 6464 3.941483 CAGTAACCAAATGCTCCCTGTAG 59.059 47.826 0.00 0.00 0.00 2.74
5040 6465 3.587506 AGTAACCAAATGCTCCCTGTAGT 59.412 43.478 0.00 0.00 0.00 2.73
5041 6466 2.789409 ACCAAATGCTCCCTGTAGTC 57.211 50.000 0.00 0.00 0.00 2.59
5042 6467 1.282157 ACCAAATGCTCCCTGTAGTCC 59.718 52.381 0.00 0.00 0.00 3.85
5043 6468 1.281867 CCAAATGCTCCCTGTAGTCCA 59.718 52.381 0.00 0.00 0.00 4.02
5044 6469 2.092212 CCAAATGCTCCCTGTAGTCCAT 60.092 50.000 0.00 0.00 0.00 3.41
5045 6470 3.136443 CCAAATGCTCCCTGTAGTCCATA 59.864 47.826 0.00 0.00 0.00 2.74
5046 6471 4.384056 CAAATGCTCCCTGTAGTCCATAG 58.616 47.826 0.00 0.00 0.00 2.23
5047 6472 2.088104 TGCTCCCTGTAGTCCATAGG 57.912 55.000 0.00 0.00 35.31 2.57
5048 6473 1.573857 TGCTCCCTGTAGTCCATAGGA 59.426 52.381 0.00 0.00 37.74 2.94
5049 6474 2.243810 GCTCCCTGTAGTCCATAGGAG 58.756 57.143 0.00 0.00 42.46 3.69
5050 6475 2.425102 GCTCCCTGTAGTCCATAGGAGT 60.425 54.545 5.81 0.00 41.97 3.85
5051 6476 3.226777 CTCCCTGTAGTCCATAGGAGTG 58.773 54.545 3.67 0.00 37.74 3.51
5052 6477 2.856864 TCCCTGTAGTCCATAGGAGTGA 59.143 50.000 3.67 0.00 37.74 3.41
5053 6478 3.117474 TCCCTGTAGTCCATAGGAGTGAG 60.117 52.174 3.67 0.38 37.74 3.51
5054 6479 3.373220 CCCTGTAGTCCATAGGAGTGAGT 60.373 52.174 3.67 0.00 37.74 3.41
5055 6480 4.141228 CCCTGTAGTCCATAGGAGTGAGTA 60.141 50.000 3.67 0.00 37.74 2.59
5056 6481 5.446860 CCTGTAGTCCATAGGAGTGAGTAA 58.553 45.833 3.67 0.00 37.74 2.24
5057 6482 5.299782 CCTGTAGTCCATAGGAGTGAGTAAC 59.700 48.000 3.67 0.00 37.74 2.50
5058 6483 5.823312 TGTAGTCCATAGGAGTGAGTAACA 58.177 41.667 3.67 0.00 35.92 2.41
5059 6484 6.250711 TGTAGTCCATAGGAGTGAGTAACAA 58.749 40.000 3.67 0.00 35.92 2.83
5060 6485 5.662674 AGTCCATAGGAGTGAGTAACAAC 57.337 43.478 0.00 0.00 33.56 3.32
5061 6486 4.466726 AGTCCATAGGAGTGAGTAACAACC 59.533 45.833 0.00 0.00 33.56 3.77
5062 6487 4.222145 GTCCATAGGAGTGAGTAACAACCA 59.778 45.833 0.00 0.00 29.39 3.67
5063 6488 4.222145 TCCATAGGAGTGAGTAACAACCAC 59.778 45.833 0.00 0.00 32.50 4.16
5064 6489 2.814280 AGGAGTGAGTAACAACCACG 57.186 50.000 0.00 0.00 36.06 4.94
5065 6490 2.037144 AGGAGTGAGTAACAACCACGT 58.963 47.619 0.00 0.00 36.06 4.49
5066 6491 3.225104 AGGAGTGAGTAACAACCACGTA 58.775 45.455 0.00 0.00 36.06 3.57
5067 6492 3.005155 AGGAGTGAGTAACAACCACGTAC 59.995 47.826 0.00 0.00 36.06 3.67
5068 6493 2.975851 GAGTGAGTAACAACCACGTACG 59.024 50.000 15.01 15.01 36.06 3.67
5069 6494 2.053627 GTGAGTAACAACCACGTACGG 58.946 52.381 21.06 8.46 0.00 4.02
5070 6495 1.952990 TGAGTAACAACCACGTACGGA 59.047 47.619 21.06 0.00 0.00 4.69
5071 6496 2.557924 TGAGTAACAACCACGTACGGAT 59.442 45.455 21.06 0.82 0.00 4.18
5072 6497 3.174375 GAGTAACAACCACGTACGGATC 58.826 50.000 21.06 0.00 0.00 3.36
5073 6498 2.094545 AGTAACAACCACGTACGGATCC 60.095 50.000 21.06 0.00 0.00 3.36
5074 6499 0.680618 AACAACCACGTACGGATCCA 59.319 50.000 21.06 0.00 0.00 3.41
5075 6500 0.899720 ACAACCACGTACGGATCCAT 59.100 50.000 21.06 0.00 0.00 3.41
5076 6501 1.286501 CAACCACGTACGGATCCATG 58.713 55.000 21.06 7.27 0.00 3.66
5077 6502 0.461339 AACCACGTACGGATCCATGC 60.461 55.000 21.06 0.00 0.00 4.06
5078 6503 1.594293 CCACGTACGGATCCATGCC 60.594 63.158 21.06 0.00 0.00 4.40
5084 6509 2.737180 CGGATCCATGCCGTAGCT 59.263 61.111 13.41 0.00 43.66 3.32
5085 6510 1.373497 CGGATCCATGCCGTAGCTC 60.373 63.158 13.41 0.00 43.66 4.09
5086 6511 1.810606 CGGATCCATGCCGTAGCTCT 61.811 60.000 13.41 0.00 43.66 4.09
5087 6512 0.320247 GGATCCATGCCGTAGCTCTG 60.320 60.000 6.95 0.00 40.80 3.35
5088 6513 0.676184 GATCCATGCCGTAGCTCTGA 59.324 55.000 0.00 0.00 40.80 3.27
5089 6514 1.069204 GATCCATGCCGTAGCTCTGAA 59.931 52.381 0.00 0.00 40.80 3.02
5090 6515 0.901827 TCCATGCCGTAGCTCTGAAA 59.098 50.000 0.00 0.00 40.80 2.69
5091 6516 1.277842 TCCATGCCGTAGCTCTGAAAA 59.722 47.619 0.00 0.00 40.80 2.29
5092 6517 2.092968 TCCATGCCGTAGCTCTGAAAAT 60.093 45.455 0.00 0.00 40.80 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.558233 TCAATCCATGCATGCAACCA 58.442 45.000 26.68 11.44 0.00 3.67
19 20 9.636789 TCAACTTAATCATGAAGATCAATCCAT 57.363 29.630 0.00 0.00 35.39 3.41
97 98 5.675684 TGTGGACAGAGAGTTGCATATTA 57.324 39.130 0.00 0.00 0.00 0.98
128 129 3.498661 GGAGGGTGGCAATTAATAGGAGG 60.499 52.174 0.00 0.00 0.00 4.30
131 132 2.490902 GGGGAGGGTGGCAATTAATAGG 60.491 54.545 0.00 0.00 0.00 2.57
151 152 7.954666 TCAAGATTATTTTTCTTGGGTAGGG 57.045 36.000 12.12 0.00 46.50 3.53
217 229 0.758734 TACCCCGATCTCATGCTTGG 59.241 55.000 0.00 0.00 0.00 3.61
218 230 1.414181 ACTACCCCGATCTCATGCTTG 59.586 52.381 0.00 0.00 0.00 4.01
223 235 4.030913 TCTTTCAACTACCCCGATCTCAT 58.969 43.478 0.00 0.00 0.00 2.90
231 243 5.875359 CACTCTACAATCTTTCAACTACCCC 59.125 44.000 0.00 0.00 0.00 4.95
312 325 9.899226 GTGGGCATTTATTAGAGAATATCAAAC 57.101 33.333 0.00 0.00 0.00 2.93
337 352 7.095816 GGTTGCTTGCGTATTTATTTTTGAAGT 60.096 33.333 0.00 0.00 0.00 3.01
338 353 7.226772 GGTTGCTTGCGTATTTATTTTTGAAG 58.773 34.615 0.00 0.00 0.00 3.02
353 369 0.458889 CCATTCATGGGTTGCTTGCG 60.459 55.000 0.00 0.00 44.31 4.85
367 402 4.173036 TCGGAAATTTTGTGCTCCATTC 57.827 40.909 0.00 0.00 0.00 2.67
387 422 6.430451 TGTTTCTTCTTGCGAGAATCTTTTC 58.570 36.000 16.86 6.78 40.93 2.29
415 450 2.008242 TGGGTTGCCATTGCTTACTT 57.992 45.000 0.00 0.00 38.71 2.24
416 451 1.826720 CATGGGTTGCCATTGCTTACT 59.173 47.619 0.00 0.00 38.71 2.24
417 452 1.824230 TCATGGGTTGCCATTGCTTAC 59.176 47.619 0.00 0.00 38.71 2.34
418 453 2.228545 TCATGGGTTGCCATTGCTTA 57.771 45.000 0.00 0.00 38.71 3.09
447 482 0.542938 TAGAGGGCTGCATATCGGCT 60.543 55.000 0.50 0.00 46.32 5.52
459 494 0.247736 ATCGAATGCGGATAGAGGGC 59.752 55.000 0.00 0.00 38.28 5.19
494 529 7.420800 GGTGAATTTTTGTAGAGGATATGCAG 58.579 38.462 0.00 0.00 0.00 4.41
515 554 1.686428 CGGATTCTCTCTGAGGGGTGA 60.686 57.143 4.41 0.00 31.20 4.02
558 597 4.701956 ACTCCATTATTGAAACGCAAGG 57.298 40.909 0.00 0.00 40.42 3.61
687 734 0.240945 GCCAGAATCAACAACCCGTG 59.759 55.000 0.00 0.00 0.00 4.94
882 931 2.042843 CTCCTCCTACCCCACGCT 60.043 66.667 0.00 0.00 0.00 5.07
944 1001 1.627550 GAACTCGACGGGAAGCAAGC 61.628 60.000 0.00 0.00 0.00 4.01
960 1017 2.367107 GGGGAGGGAGGGAGGAAC 60.367 72.222 0.00 0.00 0.00 3.62
1107 1192 2.734079 GACTTCTCACAGCAGCTGTTAC 59.266 50.000 26.16 8.18 42.59 2.50
1119 1204 4.640647 AGGTTTCTTGGTTTGACTTCTCAC 59.359 41.667 0.00 0.00 0.00 3.51
1136 1221 2.288961 TTGGATACGCGAGAGGTTTC 57.711 50.000 15.93 0.00 42.51 2.78
1140 1225 3.592381 CAATTTTGGATACGCGAGAGG 57.408 47.619 15.93 0.00 42.51 3.69
1157 1242 2.436173 GGAAGCTCCTACTAGCACCAAT 59.564 50.000 0.00 0.00 45.30 3.16
1163 1248 3.822167 AGATAACGGAAGCTCCTACTAGC 59.178 47.826 0.00 0.00 43.11 3.42
1171 1263 7.829378 TTCTTTCTAAAGATAACGGAAGCTC 57.171 36.000 6.01 0.00 43.92 4.09
1215 1307 8.834465 GCAGCACTACAGTACTACTAATAACTA 58.166 37.037 0.00 0.00 0.00 2.24
1333 1487 3.113386 TCGTCATCGAGCTCCAGCG 62.113 63.158 8.47 6.33 41.35 5.18
1389 1543 3.002246 GCTGTTCGATGTTCAGTGTTGAA 59.998 43.478 0.00 0.00 40.92 2.69
1390 1544 2.543848 GCTGTTCGATGTTCAGTGTTGA 59.456 45.455 0.00 0.00 0.00 3.18
1401 1557 0.994995 CGGTTCAGAGCTGTTCGATG 59.005 55.000 0.00 0.00 0.00 3.84
1447 1603 3.065786 AGCATCAGTATTGATTGTTGCCG 59.934 43.478 7.65 0.00 42.12 5.69
1485 1748 4.980590 TGTTAAAGCAAACATAGATGCGG 58.019 39.130 0.00 0.00 46.98 5.69
1520 1783 0.647410 CCGACGAGCTGCAAATACAG 59.353 55.000 1.02 0.00 40.80 2.74
1525 1788 3.345808 GCACCGACGAGCTGCAAA 61.346 61.111 1.02 0.00 0.00 3.68
1593 1856 1.141019 GCTGCACCGACGATTCCTA 59.859 57.895 0.00 0.00 0.00 2.94
1595 1858 2.434185 TGCTGCACCGACGATTCC 60.434 61.111 0.00 0.00 0.00 3.01
1596 1859 2.456119 CCTGCTGCACCGACGATTC 61.456 63.158 0.00 0.00 0.00 2.52
1607 1870 3.984193 AATGGTCTCGCCCTGCTGC 62.984 63.158 0.00 0.00 36.04 5.25
1608 1871 1.817099 GAATGGTCTCGCCCTGCTG 60.817 63.158 0.00 0.00 36.04 4.41
1610 1873 2.514824 GGAATGGTCTCGCCCTGC 60.515 66.667 0.00 0.00 36.04 4.85
1611 1874 2.190578 GGGAATGGTCTCGCCCTG 59.809 66.667 0.00 0.00 37.59 4.45
1612 1875 2.041265 AGGGAATGGTCTCGCCCT 59.959 61.111 0.00 0.00 45.97 5.19
1613 1876 0.759436 TCTAGGGAATGGTCTCGCCC 60.759 60.000 0.00 0.00 41.00 6.13
1614 1877 0.389757 GTCTAGGGAATGGTCTCGCC 59.610 60.000 0.00 0.00 37.90 5.54
1616 1879 2.959030 TGATGTCTAGGGAATGGTCTCG 59.041 50.000 0.00 0.00 0.00 4.04
1617 1880 4.837860 AGATGATGTCTAGGGAATGGTCTC 59.162 45.833 0.00 0.00 34.69 3.36
1619 1882 5.306678 AGAAGATGATGTCTAGGGAATGGTC 59.693 44.000 0.00 0.00 35.67 4.02
1620 1883 5.222870 AGAAGATGATGTCTAGGGAATGGT 58.777 41.667 0.00 0.00 35.67 3.55
1621 1884 5.822132 AGAAGATGATGTCTAGGGAATGG 57.178 43.478 0.00 0.00 35.67 3.16
1625 1888 7.921041 AACAATAGAAGATGATGTCTAGGGA 57.079 36.000 0.00 0.00 35.67 4.20
1626 1889 7.989741 ACAAACAATAGAAGATGATGTCTAGGG 59.010 37.037 0.00 0.00 35.67 3.53
1627 1890 8.954950 ACAAACAATAGAAGATGATGTCTAGG 57.045 34.615 0.00 0.00 35.67 3.02
1630 1893 9.950496 AAGTACAAACAATAGAAGATGATGTCT 57.050 29.630 0.00 0.00 39.43 3.41
1792 2469 2.543848 TGCTCGATGACAACAACAAGAC 59.456 45.455 0.00 0.00 0.00 3.01
1827 2508 2.260844 TTCTGAGGTGAGCAAACAGG 57.739 50.000 0.00 0.00 0.00 4.00
1837 2518 3.492309 CGGAAGAGGATGATTCTGAGGTG 60.492 52.174 0.00 0.00 34.35 4.00
2087 2778 4.524328 TGGAAAAAGAGGAGGAAATGAAGC 59.476 41.667 0.00 0.00 0.00 3.86
2175 2869 2.561419 AGTAAGCACTCGTGGAGCTAAA 59.439 45.455 7.04 0.00 37.70 1.85
2222 2916 2.290641 TGCCATTGGTAACCAGTACAGG 60.291 50.000 2.14 2.14 33.81 4.00
2228 2922 0.039618 ACCCTGCCATTGGTAACCAG 59.960 55.000 4.26 2.99 33.81 4.00
2378 3073 5.440610 CAGGCTGGTTATGTAAGAAAGGAT 58.559 41.667 6.61 0.00 0.00 3.24
2405 3103 7.335422 AGTGTAATGTTCTGCAAGGAATAGAAG 59.665 37.037 0.00 0.00 31.66 2.85
2477 3175 2.634940 AGGATATCCTCCATCACAACCG 59.365 50.000 19.18 0.00 44.77 4.44
2570 3268 9.209175 GATCATGATATTGAAGTGGTAGTAACC 57.791 37.037 8.54 0.00 46.98 2.85
2571 3269 9.209175 GGATCATGATATTGAAGTGGTAGTAAC 57.791 37.037 8.54 0.00 0.00 2.50
2572 3270 9.159254 AGGATCATGATATTGAAGTGGTAGTAA 57.841 33.333 8.54 0.00 0.00 2.24
2573 3271 8.727100 AGGATCATGATATTGAAGTGGTAGTA 57.273 34.615 8.54 0.00 0.00 1.82
2574 3272 7.256475 GGAGGATCATGATATTGAAGTGGTAGT 60.256 40.741 8.54 0.00 36.25 2.73
2575 3273 7.102346 GGAGGATCATGATATTGAAGTGGTAG 58.898 42.308 8.54 0.00 36.25 3.18
2655 3364 5.772672 ACCCATTGTTGCAGTTAGAATACAA 59.227 36.000 0.00 0.00 0.00 2.41
3231 4608 3.776969 TCTTGTAGACCTCTGCCATGATT 59.223 43.478 0.00 0.00 0.00 2.57
3354 4731 9.736023 GTAATTAGCAGAAATTTTGGTCCATAG 57.264 33.333 0.00 0.00 31.63 2.23
3414 4791 9.529325 GGTTTTATTCAGTTTTACAGCTTTTCT 57.471 29.630 0.00 0.00 0.00 2.52
3450 4827 7.874940 TGTTTCATTTTCTTCTACTGTCATGG 58.125 34.615 0.00 0.00 0.00 3.66
3468 4845 8.340618 ACTAGAGCATGTATGTTTTGTTTCAT 57.659 30.769 0.00 0.00 0.00 2.57
3469 4846 7.744087 ACTAGAGCATGTATGTTTTGTTTCA 57.256 32.000 0.00 0.00 0.00 2.69
3549 4934 3.984508 ATCACAAAGCATATGAGCTGC 57.015 42.857 6.97 0.00 45.89 5.25
3979 5390 2.496070 TGATCTTGAAGTACCCGTCCTG 59.504 50.000 0.00 0.00 0.00 3.86
4316 5738 0.387494 TCTGCACGCGTCGTATTTCA 60.387 50.000 9.86 0.00 38.32 2.69
4427 5849 5.766670 AGGTCCATTAGTATTGCATGACATG 59.233 40.000 11.27 11.27 0.00 3.21
4484 5906 2.184533 TGAAGTTTATGGGGCTCTCGA 58.815 47.619 0.00 0.00 0.00 4.04
4520 5942 2.562296 AGTTCACACCCCCTATGTCAT 58.438 47.619 0.00 0.00 0.00 3.06
4653 6076 2.096218 GCAGTTTCAGTTAAGCTGTCGG 60.096 50.000 3.31 0.00 45.43 4.79
4657 6080 5.008613 TGGTTAAGCAGTTTCAGTTAAGCTG 59.991 40.000 2.54 0.00 46.16 4.24
4664 6087 5.625150 AGAAGATGGTTAAGCAGTTTCAGT 58.375 37.500 24.08 10.79 0.00 3.41
4753 6178 4.841813 GGGGTAATCCTCCTTTTCCAAAAA 59.158 41.667 0.00 0.00 35.33 1.94
4754 6179 4.422057 GGGGTAATCCTCCTTTTCCAAAA 58.578 43.478 0.00 0.00 35.33 2.44
4755 6180 4.055710 GGGGTAATCCTCCTTTTCCAAA 57.944 45.455 0.00 0.00 35.33 3.28
4756 6181 3.750501 GGGGTAATCCTCCTTTTCCAA 57.249 47.619 0.00 0.00 35.33 3.53
4765 6190 0.105607 AGAGTCCGGGGGTAATCCTC 60.106 60.000 0.00 0.00 35.33 3.71
4766 6191 0.398664 CAGAGTCCGGGGGTAATCCT 60.399 60.000 0.00 0.00 35.33 3.24
4767 6192 2.041206 GCAGAGTCCGGGGGTAATCC 62.041 65.000 0.00 0.00 0.00 3.01
4768 6193 1.335132 TGCAGAGTCCGGGGGTAATC 61.335 60.000 0.00 0.00 0.00 1.75
4769 6194 0.694444 ATGCAGAGTCCGGGGGTAAT 60.694 55.000 0.00 0.00 0.00 1.89
4770 6195 1.306654 ATGCAGAGTCCGGGGGTAA 60.307 57.895 0.00 0.00 0.00 2.85
4771 6196 1.760875 GATGCAGAGTCCGGGGGTA 60.761 63.158 0.00 0.00 0.00 3.69
4772 6197 3.083997 GATGCAGAGTCCGGGGGT 61.084 66.667 0.00 0.00 0.00 4.95
4773 6198 3.866582 GGATGCAGAGTCCGGGGG 61.867 72.222 0.00 0.00 0.00 5.40
4774 6199 2.196997 TTTGGATGCAGAGTCCGGGG 62.197 60.000 0.00 0.00 38.64 5.73
4775 6200 0.322456 TTTTGGATGCAGAGTCCGGG 60.322 55.000 0.00 0.00 38.64 5.73
4776 6201 1.089920 CTTTTGGATGCAGAGTCCGG 58.910 55.000 0.00 0.00 38.64 5.14
4777 6202 2.099141 TCTTTTGGATGCAGAGTCCG 57.901 50.000 0.00 0.00 38.64 4.79
4787 6212 0.103572 GCCGCATGCATCTTTTGGAT 59.896 50.000 19.57 0.00 40.77 3.41
4788 6213 1.512230 GCCGCATGCATCTTTTGGA 59.488 52.632 19.57 0.00 40.77 3.53
4789 6214 1.519898 GGCCGCATGCATCTTTTGG 60.520 57.895 19.57 9.84 43.89 3.28
4790 6215 0.179094 ATGGCCGCATGCATCTTTTG 60.179 50.000 19.57 0.00 43.89 2.44
4791 6216 1.401761 TATGGCCGCATGCATCTTTT 58.598 45.000 19.57 0.00 43.89 2.27
4792 6217 1.624336 ATATGGCCGCATGCATCTTT 58.376 45.000 19.57 1.46 43.89 2.52
4793 6218 1.624336 AATATGGCCGCATGCATCTT 58.376 45.000 19.57 6.98 43.89 2.40
4794 6219 2.495155 TAATATGGCCGCATGCATCT 57.505 45.000 19.57 0.00 43.89 2.90
4795 6220 3.788333 AATAATATGGCCGCATGCATC 57.212 42.857 19.57 8.10 43.89 3.91
4796 6221 5.657826 TTTAATAATATGGCCGCATGCAT 57.342 34.783 19.57 5.96 43.89 3.96
4797 6222 5.459536 TTTTAATAATATGGCCGCATGCA 57.540 34.783 19.57 0.00 43.89 3.96
4817 6242 4.815846 CCTTGTTATTTGCTGCCACTTTTT 59.184 37.500 0.00 0.00 0.00 1.94
4818 6243 4.141733 ACCTTGTTATTTGCTGCCACTTTT 60.142 37.500 0.00 0.00 0.00 2.27
4819 6244 3.387699 ACCTTGTTATTTGCTGCCACTTT 59.612 39.130 0.00 0.00 0.00 2.66
4820 6245 2.965147 ACCTTGTTATTTGCTGCCACTT 59.035 40.909 0.00 0.00 0.00 3.16
4821 6246 2.558359 GACCTTGTTATTTGCTGCCACT 59.442 45.455 0.00 0.00 0.00 4.00
4822 6247 2.558359 AGACCTTGTTATTTGCTGCCAC 59.442 45.455 0.00 0.00 0.00 5.01
4823 6248 2.557924 CAGACCTTGTTATTTGCTGCCA 59.442 45.455 0.00 0.00 0.00 4.92
4824 6249 2.819608 TCAGACCTTGTTATTTGCTGCC 59.180 45.455 0.00 0.00 0.00 4.85
4825 6250 4.708726 ATCAGACCTTGTTATTTGCTGC 57.291 40.909 0.00 0.00 0.00 5.25
4826 6251 6.543465 TGGATATCAGACCTTGTTATTTGCTG 59.457 38.462 4.83 0.00 0.00 4.41
4827 6252 6.662755 TGGATATCAGACCTTGTTATTTGCT 58.337 36.000 4.83 0.00 0.00 3.91
4828 6253 6.942532 TGGATATCAGACCTTGTTATTTGC 57.057 37.500 4.83 0.00 0.00 3.68
4829 6254 8.511604 ACTTGGATATCAGACCTTGTTATTTG 57.488 34.615 4.83 0.00 0.00 2.32
4830 6255 9.614792 GTACTTGGATATCAGACCTTGTTATTT 57.385 33.333 4.83 0.00 0.00 1.40
4831 6256 8.768397 TGTACTTGGATATCAGACCTTGTTATT 58.232 33.333 4.83 0.00 0.00 1.40
4832 6257 8.319057 TGTACTTGGATATCAGACCTTGTTAT 57.681 34.615 4.83 0.00 0.00 1.89
4833 6258 7.727578 TGTACTTGGATATCAGACCTTGTTA 57.272 36.000 4.83 0.00 0.00 2.41
4834 6259 6.620877 TGTACTTGGATATCAGACCTTGTT 57.379 37.500 4.83 0.00 0.00 2.83
4835 6260 6.213600 AGTTGTACTTGGATATCAGACCTTGT 59.786 38.462 4.83 0.00 0.00 3.16
4836 6261 6.644347 AGTTGTACTTGGATATCAGACCTTG 58.356 40.000 4.83 0.00 0.00 3.61
4837 6262 6.405953 CGAGTTGTACTTGGATATCAGACCTT 60.406 42.308 4.83 0.00 0.00 3.50
4838 6263 5.067936 CGAGTTGTACTTGGATATCAGACCT 59.932 44.000 4.83 0.00 0.00 3.85
4839 6264 5.282510 CGAGTTGTACTTGGATATCAGACC 58.717 45.833 4.83 0.00 0.00 3.85
4840 6265 4.740695 GCGAGTTGTACTTGGATATCAGAC 59.259 45.833 4.83 0.00 30.15 3.51
4841 6266 4.401202 TGCGAGTTGTACTTGGATATCAGA 59.599 41.667 4.83 0.00 30.15 3.27
4842 6267 4.682787 TGCGAGTTGTACTTGGATATCAG 58.317 43.478 4.83 0.00 30.15 2.90
4843 6268 4.729227 TGCGAGTTGTACTTGGATATCA 57.271 40.909 4.83 0.00 30.15 2.15
4844 6269 5.500290 CGTTTGCGAGTTGTACTTGGATATC 60.500 44.000 0.00 0.00 41.33 1.63
4845 6270 4.328983 CGTTTGCGAGTTGTACTTGGATAT 59.671 41.667 0.00 0.00 41.33 1.63
4846 6271 3.676172 CGTTTGCGAGTTGTACTTGGATA 59.324 43.478 0.00 0.00 41.33 2.59
4847 6272 2.478894 CGTTTGCGAGTTGTACTTGGAT 59.521 45.455 0.00 0.00 41.33 3.41
4848 6273 1.862201 CGTTTGCGAGTTGTACTTGGA 59.138 47.619 0.00 0.00 41.33 3.53
4849 6274 1.070175 CCGTTTGCGAGTTGTACTTGG 60.070 52.381 0.00 0.00 41.33 3.61
4850 6275 1.862201 TCCGTTTGCGAGTTGTACTTG 59.138 47.619 0.00 0.00 41.33 3.16
4851 6276 2.132762 CTCCGTTTGCGAGTTGTACTT 58.867 47.619 0.00 0.00 41.33 2.24
4852 6277 1.779569 CTCCGTTTGCGAGTTGTACT 58.220 50.000 0.00 0.00 41.33 2.73
4853 6278 0.163146 GCTCCGTTTGCGAGTTGTAC 59.837 55.000 0.00 0.00 41.33 2.90
4854 6279 0.249531 TGCTCCGTTTGCGAGTTGTA 60.250 50.000 0.00 0.00 41.33 2.41
4855 6280 1.092921 TTGCTCCGTTTGCGAGTTGT 61.093 50.000 0.00 0.00 41.33 3.32
4856 6281 0.028770 TTTGCTCCGTTTGCGAGTTG 59.971 50.000 0.00 0.00 41.33 3.16
4857 6282 0.307760 CTTTGCTCCGTTTGCGAGTT 59.692 50.000 0.00 0.00 41.33 3.01
4858 6283 0.531974 TCTTTGCTCCGTTTGCGAGT 60.532 50.000 0.00 0.00 41.33 4.18
4859 6284 0.164647 CTCTTTGCTCCGTTTGCGAG 59.835 55.000 0.00 0.00 41.33 5.03
4860 6285 0.249699 TCTCTTTGCTCCGTTTGCGA 60.250 50.000 0.00 0.00 41.33 5.10
4861 6286 0.586319 TTCTCTTTGCTCCGTTTGCG 59.414 50.000 0.00 0.00 37.95 4.85
4862 6287 2.774439 TTTCTCTTTGCTCCGTTTGC 57.226 45.000 0.00 0.00 0.00 3.68
4863 6288 5.280945 TCATTTTTCTCTTTGCTCCGTTTG 58.719 37.500 0.00 0.00 0.00 2.93
4864 6289 5.514274 TCATTTTTCTCTTTGCTCCGTTT 57.486 34.783 0.00 0.00 0.00 3.60
4865 6290 5.514274 TTCATTTTTCTCTTTGCTCCGTT 57.486 34.783 0.00 0.00 0.00 4.44
4866 6291 5.514274 TTTCATTTTTCTCTTTGCTCCGT 57.486 34.783 0.00 0.00 0.00 4.69
4867 6292 5.748152 TGTTTTCATTTTTCTCTTTGCTCCG 59.252 36.000 0.00 0.00 0.00 4.63
4868 6293 7.538303 TTGTTTTCATTTTTCTCTTTGCTCC 57.462 32.000 0.00 0.00 0.00 4.70
4869 6294 8.659491 ACTTTGTTTTCATTTTTCTCTTTGCTC 58.341 29.630 0.00 0.00 0.00 4.26
4870 6295 8.552083 ACTTTGTTTTCATTTTTCTCTTTGCT 57.448 26.923 0.00 0.00 0.00 3.91
4881 6306 9.476202 GGCTATGACTTTACTTTGTTTTCATTT 57.524 29.630 0.00 0.00 0.00 2.32
4882 6307 8.637986 TGGCTATGACTTTACTTTGTTTTCATT 58.362 29.630 0.00 0.00 0.00 2.57
4883 6308 8.082242 GTGGCTATGACTTTACTTTGTTTTCAT 58.918 33.333 0.00 0.00 0.00 2.57
4884 6309 7.067615 TGTGGCTATGACTTTACTTTGTTTTCA 59.932 33.333 0.00 0.00 0.00 2.69
4885 6310 7.422399 TGTGGCTATGACTTTACTTTGTTTTC 58.578 34.615 0.00 0.00 0.00 2.29
4886 6311 7.341445 TGTGGCTATGACTTTACTTTGTTTT 57.659 32.000 0.00 0.00 0.00 2.43
4887 6312 6.952773 TGTGGCTATGACTTTACTTTGTTT 57.047 33.333 0.00 0.00 0.00 2.83
4888 6313 6.238925 GGTTGTGGCTATGACTTTACTTTGTT 60.239 38.462 0.00 0.00 0.00 2.83
4889 6314 5.240844 GGTTGTGGCTATGACTTTACTTTGT 59.759 40.000 0.00 0.00 0.00 2.83
4890 6315 5.616866 CGGTTGTGGCTATGACTTTACTTTG 60.617 44.000 0.00 0.00 0.00 2.77
4891 6316 4.454504 CGGTTGTGGCTATGACTTTACTTT 59.545 41.667 0.00 0.00 0.00 2.66
4892 6317 4.000988 CGGTTGTGGCTATGACTTTACTT 58.999 43.478 0.00 0.00 0.00 2.24
4893 6318 3.596214 CGGTTGTGGCTATGACTTTACT 58.404 45.455 0.00 0.00 0.00 2.24
4894 6319 2.676342 CCGGTTGTGGCTATGACTTTAC 59.324 50.000 0.00 0.00 0.00 2.01
4895 6320 2.980568 CCGGTTGTGGCTATGACTTTA 58.019 47.619 0.00 0.00 0.00 1.85
4896 6321 1.821216 CCGGTTGTGGCTATGACTTT 58.179 50.000 0.00 0.00 0.00 2.66
4897 6322 3.551259 CCGGTTGTGGCTATGACTT 57.449 52.632 0.00 0.00 0.00 3.01
4906 6331 1.472480 CTATTTTCCAGCCGGTTGTGG 59.528 52.381 17.69 14.63 34.87 4.17
4907 6332 1.472480 CCTATTTTCCAGCCGGTTGTG 59.528 52.381 17.69 8.85 0.00 3.33
4908 6333 1.353022 TCCTATTTTCCAGCCGGTTGT 59.647 47.619 17.69 0.27 0.00 3.32
4909 6334 1.743394 GTCCTATTTTCCAGCCGGTTG 59.257 52.381 11.98 11.98 0.00 3.77
4910 6335 1.353022 TGTCCTATTTTCCAGCCGGTT 59.647 47.619 1.90 0.00 0.00 4.44
4911 6336 0.988832 TGTCCTATTTTCCAGCCGGT 59.011 50.000 1.90 0.00 0.00 5.28
4912 6337 2.122783 TTGTCCTATTTTCCAGCCGG 57.877 50.000 0.00 0.00 0.00 6.13
4913 6338 3.081804 ACTTTGTCCTATTTTCCAGCCG 58.918 45.455 0.00 0.00 0.00 5.52
4914 6339 4.079253 TCACTTTGTCCTATTTTCCAGCC 58.921 43.478 0.00 0.00 0.00 4.85
4915 6340 4.762251 AGTCACTTTGTCCTATTTTCCAGC 59.238 41.667 0.00 0.00 0.00 4.85
4916 6341 7.979444 TTAGTCACTTTGTCCTATTTTCCAG 57.021 36.000 0.00 0.00 0.00 3.86
4917 6342 7.776030 TGTTTAGTCACTTTGTCCTATTTTCCA 59.224 33.333 0.00 0.00 0.00 3.53
4918 6343 8.074370 GTGTTTAGTCACTTTGTCCTATTTTCC 58.926 37.037 0.00 0.00 35.68 3.13
4919 6344 8.074370 GGTGTTTAGTCACTTTGTCCTATTTTC 58.926 37.037 0.00 0.00 38.28 2.29
4920 6345 7.778382 AGGTGTTTAGTCACTTTGTCCTATTTT 59.222 33.333 0.00 0.00 38.28 1.82
4921 6346 7.287810 AGGTGTTTAGTCACTTTGTCCTATTT 58.712 34.615 0.00 0.00 38.28 1.40
4922 6347 6.838382 AGGTGTTTAGTCACTTTGTCCTATT 58.162 36.000 0.00 0.00 38.28 1.73
4923 6348 6.435292 AGGTGTTTAGTCACTTTGTCCTAT 57.565 37.500 0.00 0.00 38.28 2.57
4924 6349 5.881923 AGGTGTTTAGTCACTTTGTCCTA 57.118 39.130 0.00 0.00 38.28 2.94
4925 6350 4.772886 AGGTGTTTAGTCACTTTGTCCT 57.227 40.909 0.00 0.00 38.28 3.85
4926 6351 5.642491 GGATAGGTGTTTAGTCACTTTGTCC 59.358 44.000 0.00 0.00 38.28 4.02
4927 6352 6.465084 AGGATAGGTGTTTAGTCACTTTGTC 58.535 40.000 0.00 0.00 38.28 3.18
4928 6353 6.435292 AGGATAGGTGTTTAGTCACTTTGT 57.565 37.500 0.00 0.00 38.28 2.83
4932 6357 9.656323 TCATAATAGGATAGGTGTTTAGTCACT 57.344 33.333 0.00 0.00 38.28 3.41
4933 6358 9.915629 CTCATAATAGGATAGGTGTTTAGTCAC 57.084 37.037 0.00 0.00 37.57 3.67
4934 6359 9.877222 TCTCATAATAGGATAGGTGTTTAGTCA 57.123 33.333 0.00 0.00 0.00 3.41
4938 6363 8.467598 GCGATCTCATAATAGGATAGGTGTTTA 58.532 37.037 0.00 0.00 0.00 2.01
4939 6364 7.324178 GCGATCTCATAATAGGATAGGTGTTT 58.676 38.462 0.00 0.00 0.00 2.83
4940 6365 6.127310 GGCGATCTCATAATAGGATAGGTGTT 60.127 42.308 0.00 0.00 0.00 3.32
4941 6366 5.361285 GGCGATCTCATAATAGGATAGGTGT 59.639 44.000 0.00 0.00 0.00 4.16
4942 6367 5.360999 TGGCGATCTCATAATAGGATAGGTG 59.639 44.000 0.00 0.00 0.00 4.00
4943 6368 5.519808 TGGCGATCTCATAATAGGATAGGT 58.480 41.667 0.00 0.00 0.00 3.08
4944 6369 6.295011 GGATGGCGATCTCATAATAGGATAGG 60.295 46.154 8.71 0.00 0.00 2.57
4945 6370 6.266330 TGGATGGCGATCTCATAATAGGATAG 59.734 42.308 8.71 0.00 0.00 2.08
4946 6371 6.136155 TGGATGGCGATCTCATAATAGGATA 58.864 40.000 8.71 0.00 0.00 2.59
4947 6372 4.964897 TGGATGGCGATCTCATAATAGGAT 59.035 41.667 8.71 0.00 0.00 3.24
4948 6373 4.352893 TGGATGGCGATCTCATAATAGGA 58.647 43.478 8.71 0.00 0.00 2.94
4949 6374 4.743057 TGGATGGCGATCTCATAATAGG 57.257 45.455 8.71 0.00 0.00 2.57
4950 6375 5.352569 GGTTTGGATGGCGATCTCATAATAG 59.647 44.000 8.71 0.00 0.00 1.73
4951 6376 5.245531 GGTTTGGATGGCGATCTCATAATA 58.754 41.667 8.71 0.00 0.00 0.98
4952 6377 4.074970 GGTTTGGATGGCGATCTCATAAT 58.925 43.478 8.71 0.00 0.00 1.28
4953 6378 3.476552 GGTTTGGATGGCGATCTCATAA 58.523 45.455 8.71 0.00 0.00 1.90
4954 6379 2.547855 CGGTTTGGATGGCGATCTCATA 60.548 50.000 8.71 0.00 0.00 2.15
4955 6380 1.811558 CGGTTTGGATGGCGATCTCAT 60.812 52.381 8.71 0.00 0.00 2.90
4956 6381 0.461870 CGGTTTGGATGGCGATCTCA 60.462 55.000 8.71 2.56 0.00 3.27
4957 6382 1.160329 CCGGTTTGGATGGCGATCTC 61.160 60.000 8.71 0.00 42.00 2.75
4958 6383 1.153168 CCGGTTTGGATGGCGATCT 60.153 57.895 8.71 0.00 42.00 2.75
4959 6384 1.029947 AACCGGTTTGGATGGCGATC 61.030 55.000 15.86 0.00 42.00 3.69
4960 6385 1.001393 AACCGGTTTGGATGGCGAT 60.001 52.632 15.86 0.00 42.00 4.58
4961 6386 1.969064 CAACCGGTTTGGATGGCGA 60.969 57.895 19.55 0.00 42.00 5.54
4962 6387 1.519751 TTCAACCGGTTTGGATGGCG 61.520 55.000 19.55 3.62 40.78 5.69
4963 6388 0.243636 CTTCAACCGGTTTGGATGGC 59.756 55.000 19.55 0.00 40.78 4.40
4964 6389 1.904287 TCTTCAACCGGTTTGGATGG 58.096 50.000 19.55 5.30 40.78 3.51
4965 6390 3.065371 GCTATCTTCAACCGGTTTGGATG 59.935 47.826 19.55 14.79 41.73 3.51
4966 6391 3.279434 GCTATCTTCAACCGGTTTGGAT 58.721 45.455 19.55 21.16 42.00 3.41
4967 6392 2.617021 GGCTATCTTCAACCGGTTTGGA 60.617 50.000 19.55 15.86 42.00 3.53
4968 6393 1.743394 GGCTATCTTCAACCGGTTTGG 59.257 52.381 19.55 7.84 46.41 3.28
4969 6394 1.743394 GGGCTATCTTCAACCGGTTTG 59.257 52.381 19.55 13.53 36.42 2.93
4970 6395 1.677820 CGGGCTATCTTCAACCGGTTT 60.678 52.381 19.55 5.23 40.79 3.27
4971 6396 0.107848 CGGGCTATCTTCAACCGGTT 60.108 55.000 15.86 15.86 40.79 4.44
4972 6397 1.520666 CGGGCTATCTTCAACCGGT 59.479 57.895 0.00 0.00 40.79 5.28
4973 6398 4.438346 CGGGCTATCTTCAACCGG 57.562 61.111 0.00 0.00 40.79 5.28
4975 6400 2.394604 GCACGGGCTATCTTCAACC 58.605 57.895 0.00 0.00 36.96 3.77
4986 6411 0.750850 TAAGAGATGGTAGCACGGGC 59.249 55.000 0.00 0.00 41.61 6.13
4987 6412 3.393800 CAATAAGAGATGGTAGCACGGG 58.606 50.000 0.00 0.00 0.00 5.28
4988 6413 3.393800 CCAATAAGAGATGGTAGCACGG 58.606 50.000 0.00 0.00 31.84 4.94
5009 6434 2.866065 GCATTTGGTTACTGGGTGCAAC 60.866 50.000 0.00 0.00 0.00 4.17
5010 6435 1.342819 GCATTTGGTTACTGGGTGCAA 59.657 47.619 0.00 0.00 0.00 4.08
5011 6436 0.965439 GCATTTGGTTACTGGGTGCA 59.035 50.000 0.00 0.00 0.00 4.57
5012 6437 1.202348 GAGCATTTGGTTACTGGGTGC 59.798 52.381 0.00 0.00 0.00 5.01
5013 6438 1.818674 GGAGCATTTGGTTACTGGGTG 59.181 52.381 0.00 0.00 0.00 4.61
5014 6439 1.272480 GGGAGCATTTGGTTACTGGGT 60.272 52.381 0.00 0.00 0.00 4.51
5015 6440 1.005924 AGGGAGCATTTGGTTACTGGG 59.994 52.381 0.00 0.00 0.00 4.45
5016 6441 2.094675 CAGGGAGCATTTGGTTACTGG 58.905 52.381 6.70 0.00 0.00 4.00
5017 6442 2.795329 ACAGGGAGCATTTGGTTACTG 58.205 47.619 10.90 10.90 36.41 2.74
5018 6443 3.587506 ACTACAGGGAGCATTTGGTTACT 59.412 43.478 0.00 0.00 0.00 2.24
5019 6444 3.939592 GACTACAGGGAGCATTTGGTTAC 59.060 47.826 0.00 0.00 0.00 2.50
5020 6445 3.054655 GGACTACAGGGAGCATTTGGTTA 60.055 47.826 0.00 0.00 0.00 2.85
5021 6446 2.290960 GGACTACAGGGAGCATTTGGTT 60.291 50.000 0.00 0.00 0.00 3.67
5022 6447 1.282157 GGACTACAGGGAGCATTTGGT 59.718 52.381 0.00 0.00 0.00 3.67
5023 6448 1.281867 TGGACTACAGGGAGCATTTGG 59.718 52.381 0.00 0.00 0.00 3.28
5024 6449 2.787473 TGGACTACAGGGAGCATTTG 57.213 50.000 0.00 0.00 0.00 2.32
5025 6450 3.392616 CCTATGGACTACAGGGAGCATTT 59.607 47.826 0.00 0.00 0.00 2.32
5026 6451 2.975489 CCTATGGACTACAGGGAGCATT 59.025 50.000 0.00 0.00 0.00 3.56
5027 6452 2.180086 TCCTATGGACTACAGGGAGCAT 59.820 50.000 0.00 0.00 33.13 3.79
5028 6453 1.573857 TCCTATGGACTACAGGGAGCA 59.426 52.381 0.00 0.00 33.13 4.26
5029 6454 2.243810 CTCCTATGGACTACAGGGAGC 58.756 57.143 0.00 0.00 42.18 4.70
5031 6456 2.856864 TCACTCCTATGGACTACAGGGA 59.143 50.000 0.00 0.00 34.92 4.20
5032 6457 3.226777 CTCACTCCTATGGACTACAGGG 58.773 54.545 0.00 0.00 0.00 4.45
5033 6458 3.904717 ACTCACTCCTATGGACTACAGG 58.095 50.000 0.00 0.00 0.00 4.00
5034 6459 5.886474 TGTTACTCACTCCTATGGACTACAG 59.114 44.000 0.00 0.00 0.00 2.74
5035 6460 5.823312 TGTTACTCACTCCTATGGACTACA 58.177 41.667 0.00 0.00 0.00 2.74
5036 6461 6.405619 GGTTGTTACTCACTCCTATGGACTAC 60.406 46.154 0.00 0.00 0.00 2.73
5037 6462 5.655532 GGTTGTTACTCACTCCTATGGACTA 59.344 44.000 0.00 0.00 0.00 2.59
5038 6463 4.466726 GGTTGTTACTCACTCCTATGGACT 59.533 45.833 0.00 0.00 0.00 3.85
5039 6464 4.222145 TGGTTGTTACTCACTCCTATGGAC 59.778 45.833 0.00 0.00 0.00 4.02
5040 6465 4.222145 GTGGTTGTTACTCACTCCTATGGA 59.778 45.833 0.00 0.00 0.00 3.41
5041 6466 4.504858 GTGGTTGTTACTCACTCCTATGG 58.495 47.826 0.00 0.00 0.00 2.74
5042 6467 4.174009 CGTGGTTGTTACTCACTCCTATG 58.826 47.826 0.00 0.00 0.00 2.23
5043 6468 3.830755 ACGTGGTTGTTACTCACTCCTAT 59.169 43.478 0.00 0.00 0.00 2.57
5044 6469 3.225104 ACGTGGTTGTTACTCACTCCTA 58.775 45.455 0.00 0.00 0.00 2.94
5045 6470 2.037144 ACGTGGTTGTTACTCACTCCT 58.963 47.619 0.00 0.00 0.00 3.69
5046 6471 2.521105 ACGTGGTTGTTACTCACTCC 57.479 50.000 0.00 0.00 0.00 3.85
5047 6472 2.975851 CGTACGTGGTTGTTACTCACTC 59.024 50.000 7.22 0.00 0.00 3.51
5048 6473 2.287788 CCGTACGTGGTTGTTACTCACT 60.288 50.000 15.21 0.00 0.00 3.41
5049 6474 2.053627 CCGTACGTGGTTGTTACTCAC 58.946 52.381 15.21 0.00 0.00 3.51
5050 6475 1.952990 TCCGTACGTGGTTGTTACTCA 59.047 47.619 15.21 0.00 0.00 3.41
5051 6476 2.704725 TCCGTACGTGGTTGTTACTC 57.295 50.000 15.21 0.00 0.00 2.59
5052 6477 2.094545 GGATCCGTACGTGGTTGTTACT 60.095 50.000 15.21 0.00 0.00 2.24
5053 6478 2.262211 GGATCCGTACGTGGTTGTTAC 58.738 52.381 15.21 0.00 0.00 2.50
5054 6479 1.891811 TGGATCCGTACGTGGTTGTTA 59.108 47.619 15.21 0.00 0.00 2.41
5055 6480 0.680618 TGGATCCGTACGTGGTTGTT 59.319 50.000 15.21 0.00 0.00 2.83
5056 6481 0.899720 ATGGATCCGTACGTGGTTGT 59.100 50.000 15.21 0.00 0.00 3.32
5057 6482 1.286501 CATGGATCCGTACGTGGTTG 58.713 55.000 15.21 0.00 0.00 3.77
5058 6483 0.461339 GCATGGATCCGTACGTGGTT 60.461 55.000 15.21 0.00 0.00 3.67
5059 6484 1.143183 GCATGGATCCGTACGTGGT 59.857 57.895 15.21 1.48 0.00 4.16
5060 6485 1.594293 GGCATGGATCCGTACGTGG 60.594 63.158 15.21 0.00 0.00 4.94
5061 6486 1.949133 CGGCATGGATCCGTACGTG 60.949 63.158 15.21 5.72 41.85 4.49
5062 6487 2.415843 CGGCATGGATCCGTACGT 59.584 61.111 15.21 0.00 41.85 3.57
5068 6493 0.320247 CAGAGCTACGGCATGGATCC 60.320 60.000 4.20 4.20 41.70 3.36
5069 6494 0.676184 TCAGAGCTACGGCATGGATC 59.324 55.000 0.00 0.00 41.70 3.36
5070 6495 1.123077 TTCAGAGCTACGGCATGGAT 58.877 50.000 0.00 0.00 41.70 3.41
5071 6496 0.901827 TTTCAGAGCTACGGCATGGA 59.098 50.000 0.00 0.00 41.70 3.41
5072 6497 1.737838 TTTTCAGAGCTACGGCATGG 58.262 50.000 0.00 0.00 41.70 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.