Multiple sequence alignment - TraesCS4D01G060100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G060100 chr4D 100.000 8369 0 0 1 8369 36410315 36418683 0.000000e+00 15455.0
1 TraesCS4D01G060100 chr4D 97.500 40 1 0 4586 4625 36414861 36414900 1.510000e-07 69.4
2 TraesCS4D01G060100 chr4D 97.500 40 1 0 4547 4586 36414900 36414939 1.510000e-07 69.4
3 TraesCS4D01G060100 chr4B 91.443 3950 247 43 4471 8369 52392319 52396228 0.000000e+00 5337.0
4 TraesCS4D01G060100 chr4B 95.146 1339 47 6 3045 4376 52390886 52392213 0.000000e+00 2097.0
5 TraesCS4D01G060100 chr4B 91.099 764 50 6 1579 2340 52388980 52389727 0.000000e+00 1018.0
6 TraesCS4D01G060100 chr4B 93.007 572 36 4 2354 2922 52390318 52390888 0.000000e+00 832.0
7 TraesCS4D01G060100 chr4B 90.675 622 28 7 928 1531 52388233 52388842 0.000000e+00 800.0
8 TraesCS4D01G060100 chr4B 88.577 534 55 4 7838 8369 52396339 52396868 1.970000e-180 643.0
9 TraesCS4D01G060100 chr4B 95.000 40 2 0 4547 4586 52392433 52392472 7.010000e-06 63.9
10 TraesCS4D01G060100 chr4B 96.970 33 1 0 18 50 52388157 52388189 1.000000e-03 56.5
11 TraesCS4D01G060100 chr4A 92.873 3157 146 30 4471 7593 566296307 566293196 0.000000e+00 4510.0
12 TraesCS4D01G060100 chr4A 95.731 1101 37 3 3045 4139 566297707 566296611 0.000000e+00 1764.0
13 TraesCS4D01G060100 chr4A 94.056 1144 48 6 1801 2925 566298844 566297702 0.000000e+00 1718.0
14 TraesCS4D01G060100 chr4A 84.725 1473 112 46 128 1569 566301275 566299885 0.000000e+00 1369.0
15 TraesCS4D01G060100 chr4A 89.757 371 19 6 7648 8007 566293183 566292821 2.750000e-124 457.0
16 TraesCS4D01G060100 chr4A 85.494 324 25 8 7440 7744 566291978 566291658 1.360000e-82 318.0
17 TraesCS4D01G060100 chr4A 94.175 206 8 2 1582 1787 566299816 566299615 2.270000e-80 311.0
18 TraesCS4D01G060100 chr4A 92.647 204 13 2 4174 4376 566296615 566296413 8.220000e-75 292.0
19 TraesCS4D01G060100 chr4A 77.982 218 38 6 8152 8369 714936348 714936141 2.450000e-25 128.0
20 TraesCS4D01G060100 chr4A 97.143 35 1 0 4552 4586 566296188 566296154 9.070000e-05 60.2
21 TraesCS4D01G060100 chr1B 83.705 448 48 7 121 567 489500935 489501358 4.710000e-107 399.0
22 TraesCS4D01G060100 chr1B 96.226 53 1 1 4419 4470 223796921 223796973 1.500000e-12 86.1
23 TraesCS4D01G060100 chr3B 86.813 273 36 0 133 405 20542433 20542161 1.060000e-78 305.0
24 TraesCS4D01G060100 chr3B 93.878 147 5 3 2910 3056 741865984 741865842 1.410000e-52 219.0
25 TraesCS4D01G060100 chr3B 94.253 87 5 0 481 567 20542129 20542043 5.270000e-27 134.0
26 TraesCS4D01G060100 chr3B 89.216 102 10 1 468 568 776558362 776558261 8.820000e-25 126.0
27 TraesCS4D01G060100 chr3B 98.077 52 1 0 4423 4474 785735206 785735257 3.220000e-14 91.6
28 TraesCS4D01G060100 chr7A 97.810 137 3 0 2914 3050 593450695 593450831 3.900000e-58 237.0
29 TraesCS4D01G060100 chr7A 79.186 221 40 3 8132 8352 613173854 613174068 1.880000e-31 148.0
30 TraesCS4D01G060100 chr7A 84.459 148 17 3 121 266 140656429 140656286 3.150000e-29 141.0
31 TraesCS4D01G060100 chr7A 86.916 107 14 0 8263 8369 516150561 516150455 4.100000e-23 121.0
32 TraesCS4D01G060100 chr7A 85.714 91 13 0 8263 8353 516150721 516150631 6.910000e-16 97.1
33 TraesCS4D01G060100 chr7A 77.439 164 32 5 8201 8361 646552932 646553093 8.940000e-15 93.5
34 TraesCS4D01G060100 chr7A 94.872 39 2 0 4139 4177 539307211 539307173 2.520000e-05 62.1
35 TraesCS4D01G060100 chr2A 98.485 132 2 0 2916 3047 333746026 333746157 5.050000e-57 233.0
36 TraesCS4D01G060100 chr2A 100.000 36 0 0 4142 4177 186443801 186443836 5.420000e-07 67.6
37 TraesCS4D01G060100 chr5D 99.219 128 1 0 2921 3048 241844204 241844077 1.820000e-56 231.0
38 TraesCS4D01G060100 chr2D 98.473 131 2 0 2920 3050 62293424 62293294 1.820000e-56 231.0
39 TraesCS4D01G060100 chr2D 98.148 54 1 0 4422 4475 637372505 637372558 2.490000e-15 95.3
40 TraesCS4D01G060100 chr2D 96.364 55 1 1 4421 4475 615026124 615026071 1.160000e-13 89.8
41 TraesCS4D01G060100 chr7D 97.080 137 3 1 2918 3053 576290198 576290334 6.530000e-56 230.0
42 TraesCS4D01G060100 chr7D 78.475 223 38 5 8142 8361 130404486 130404271 4.070000e-28 137.0
43 TraesCS4D01G060100 chr7D 86.275 102 12 1 165 266 140311531 140311432 8.880000e-20 110.0
44 TraesCS4D01G060100 chr7D 98.148 54 1 0 4422 4475 255108047 255107994 2.490000e-15 95.3
45 TraesCS4D01G060100 chr7D 85.227 88 13 0 166 253 140318144 140318057 3.220000e-14 91.6
46 TraesCS4D01G060100 chr3D 97.744 133 3 0 2916 3048 91666581 91666449 6.530000e-56 230.0
47 TraesCS4D01G060100 chr2B 97.037 135 4 0 2921 3055 423662681 423662815 2.350000e-55 228.0
48 TraesCS4D01G060100 chr2B 96.350 137 4 1 2920 3056 742468957 742469092 3.040000e-54 224.0
49 TraesCS4D01G060100 chr2B 84.677 124 12 5 446 567 794678272 794678154 5.310000e-22 117.0
50 TraesCS4D01G060100 chr2B 94.872 39 1 1 4135 4172 308315690 308315728 9.070000e-05 60.2
51 TraesCS4D01G060100 chr3A 90.244 123 11 1 446 567 581626305 581626427 8.690000e-35 159.0
52 TraesCS4D01G060100 chr5A 80.220 182 29 4 8132 8313 210840640 210840466 6.820000e-26 130.0
53 TraesCS4D01G060100 chr5A 93.443 61 3 1 4415 4475 426351487 426351428 1.160000e-13 89.8
54 TraesCS4D01G060100 chr6A 82.014 139 23 2 8232 8369 154048839 154048702 5.310000e-22 117.0
55 TraesCS4D01G060100 chr6A 93.220 59 4 0 4416 4474 52314445 52314387 4.160000e-13 87.9
56 TraesCS4D01G060100 chr7B 79.375 160 17 7 121 266 105510704 105510547 1.920000e-16 99.0
57 TraesCS4D01G060100 chr6B 98.182 55 1 0 4421 4475 308516201 308516255 6.910000e-16 97.1
58 TraesCS4D01G060100 chr6B 92.683 41 3 0 4132 4172 132651947 132651987 9.070000e-05 60.2
59 TraesCS4D01G060100 chr6B 100.000 32 0 0 4135 4166 319873517 319873548 9.070000e-05 60.2
60 TraesCS4D01G060100 chr6B 97.059 34 1 0 4139 4172 40678225 40678258 3.260000e-04 58.4
61 TraesCS4D01G060100 chr5B 95.082 61 2 1 4415 4475 386533360 386533419 2.490000e-15 95.3
62 TraesCS4D01G060100 chr1A 100.000 35 0 0 4143 4177 365069957 365069923 1.950000e-06 65.8
63 TraesCS4D01G060100 chr1D 94.737 38 2 0 4140 4177 255504240 255504277 9.070000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G060100 chr4D 36410315 36418683 8368 False 5197.933333 15455 98.333333 1 8369 3 chr4D.!!$F1 8368
1 TraesCS4D01G060100 chr4B 52388157 52396868 8711 False 1355.925000 5337 92.739625 18 8369 8 chr4B.!!$F1 8351
2 TraesCS4D01G060100 chr4A 566291658 566301275 9617 True 1199.911111 4510 91.844556 128 8007 9 chr4A.!!$R2 7879

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
325 326 0.179006 CTGCTTCCCCTGCTATTCCC 60.179 60.000 0.00 0.0 0.00 3.97 F
554 567 0.322546 GGTGGATTGTGGTGGGACTC 60.323 60.000 0.00 0.0 0.00 3.36 F
573 595 0.526662 CCCACCTACAGTCGTCTGAC 59.473 60.000 16.64 0.0 43.76 3.51 F
901 924 1.000506 TGGAGTACGAGTTCCTTGCAC 59.999 52.381 0.00 0.0 34.48 4.57 F
1821 2713 0.918983 TACCATGCTCCTTTCCCAGG 59.081 55.000 0.00 0.0 45.64 4.45 F
2936 4418 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.0 0.00 4.12 F
3412 4896 0.036732 CAGGGCTACTTCCAACAGCA 59.963 55.000 0.00 0.0 37.02 4.41 F
4452 6013 1.897560 GCTTCTGCCCCGCTTTATAT 58.102 50.000 0.00 0.0 0.00 0.86 F
4954 6516 2.427095 GTGTGCACTTGAGGACCTTTTT 59.573 45.455 19.41 0.0 0.00 1.94 F
5556 7119 3.181451 TGTTTTCTCTGTGCTCTGTCCAT 60.181 43.478 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1303 1344 0.180406 ACGCAGGCCATAAGGTAAGG 59.820 55.000 5.01 0.0 37.19 2.69 R
1412 1453 1.204704 GCATTGACCCTAAAAGTGGCC 59.795 52.381 0.00 0.0 0.00 5.36 R
1718 1853 1.633432 AGCTGGTAAAGGTGCCACATA 59.367 47.619 0.00 0.0 34.08 2.29 R
2841 4323 0.036875 ACAGCCTCTTGCCTGGTTAC 59.963 55.000 0.00 0.0 42.71 2.50 R
3025 4507 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.0 0.00 2.17 R
4212 5701 0.251341 ATCAGCACCCAGAACCAACC 60.251 55.000 0.00 0.0 0.00 3.77 R
5159 6722 1.558756 CCACTCAGAATCTTGCTCCCT 59.441 52.381 0.00 0.0 0.00 4.20 R
5481 7044 2.552743 GTCAACTAACCTTCCAAGTGCC 59.447 50.000 0.00 0.0 0.00 5.01 R
5789 7367 2.571212 TCGTTCACCTGCAAAAGTCAT 58.429 42.857 0.00 0.0 0.00 3.06 R
7438 9036 0.323999 TCAGCAGCAAATCCTGGCAT 60.324 50.000 0.00 0.0 33.44 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 4.806339 CCCCCGCTCCCTCCTTCT 62.806 72.222 0.00 0.00 0.00 2.85
51 52 2.689034 CCCCGCTCCCTCCTTCTT 60.689 66.667 0.00 0.00 0.00 2.52
53 54 0.981277 CCCCGCTCCCTCCTTCTTAA 60.981 60.000 0.00 0.00 0.00 1.85
83 84 1.541588 GGCAACTTCTTGACCATGGTC 59.458 52.381 33.97 33.97 44.77 4.02
84 85 2.508526 GCAACTTCTTGACCATGGTCT 58.491 47.619 37.92 19.51 44.80 3.85
85 86 2.485814 GCAACTTCTTGACCATGGTCTC 59.514 50.000 37.92 19.88 44.80 3.36
86 87 3.743521 CAACTTCTTGACCATGGTCTCA 58.256 45.455 37.92 25.94 44.80 3.27
87 88 4.136796 CAACTTCTTGACCATGGTCTCAA 58.863 43.478 37.92 26.82 44.80 3.02
88 89 3.744660 ACTTCTTGACCATGGTCTCAAC 58.255 45.455 37.92 18.46 44.80 3.18
89 90 3.392616 ACTTCTTGACCATGGTCTCAACT 59.607 43.478 37.92 18.00 44.80 3.16
90 91 3.407424 TCTTGACCATGGTCTCAACTG 57.593 47.619 37.92 22.84 44.80 3.16
91 92 2.038952 TCTTGACCATGGTCTCAACTGG 59.961 50.000 37.92 21.62 44.80 4.00
92 93 1.728323 TGACCATGGTCTCAACTGGA 58.272 50.000 37.92 18.11 44.80 3.86
93 94 2.054021 TGACCATGGTCTCAACTGGAA 58.946 47.619 37.92 17.43 44.80 3.53
94 95 2.441375 TGACCATGGTCTCAACTGGAAA 59.559 45.455 37.92 16.73 44.80 3.13
95 96 3.117701 TGACCATGGTCTCAACTGGAAAA 60.118 43.478 37.92 16.24 44.80 2.29
96 97 3.222603 ACCATGGTCTCAACTGGAAAAC 58.777 45.455 13.00 0.00 32.92 2.43
97 98 2.558359 CCATGGTCTCAACTGGAAAACC 59.442 50.000 2.57 0.00 0.00 3.27
98 99 3.221771 CATGGTCTCAACTGGAAAACCA 58.778 45.455 0.00 0.00 40.77 3.67
99 100 3.374042 TGGTCTCAACTGGAAAACCAA 57.626 42.857 0.00 0.00 34.02 3.67
100 101 3.909732 TGGTCTCAACTGGAAAACCAAT 58.090 40.909 0.00 0.00 34.02 3.16
101 102 5.055265 TGGTCTCAACTGGAAAACCAATA 57.945 39.130 0.00 0.00 34.02 1.90
102 103 5.070001 TGGTCTCAACTGGAAAACCAATAG 58.930 41.667 0.00 0.00 34.02 1.73
103 104 4.459337 GGTCTCAACTGGAAAACCAATAGG 59.541 45.833 0.00 0.00 42.21 2.57
104 105 5.313712 GTCTCAACTGGAAAACCAATAGGA 58.686 41.667 0.00 0.00 38.69 2.94
105 106 5.768164 GTCTCAACTGGAAAACCAATAGGAA 59.232 40.000 0.00 0.00 38.69 3.36
106 107 6.264518 GTCTCAACTGGAAAACCAATAGGAAA 59.735 38.462 0.00 0.00 38.69 3.13
107 108 6.836527 TCTCAACTGGAAAACCAATAGGAAAA 59.163 34.615 0.00 0.00 38.69 2.29
108 109 7.343316 TCTCAACTGGAAAACCAATAGGAAAAA 59.657 33.333 0.00 0.00 38.69 1.94
109 110 7.269316 TCAACTGGAAAACCAATAGGAAAAAC 58.731 34.615 0.00 0.00 38.69 2.43
110 111 5.838529 ACTGGAAAACCAATAGGAAAAACG 58.161 37.500 0.00 0.00 38.69 3.60
111 112 5.203060 TGGAAAACCAATAGGAAAAACGG 57.797 39.130 0.00 0.00 38.69 4.44
112 113 4.039366 TGGAAAACCAATAGGAAAAACGGG 59.961 41.667 0.00 0.00 38.69 5.28
113 114 4.281435 GGAAAACCAATAGGAAAAACGGGA 59.719 41.667 0.00 0.00 38.69 5.14
114 115 5.046878 GGAAAACCAATAGGAAAAACGGGAT 60.047 40.000 0.00 0.00 38.69 3.85
115 116 5.654603 AAACCAATAGGAAAAACGGGATC 57.345 39.130 0.00 0.00 38.69 3.36
116 117 3.275999 ACCAATAGGAAAAACGGGATCG 58.724 45.455 0.00 0.00 39.47 3.69
117 118 3.054948 ACCAATAGGAAAAACGGGATCGA 60.055 43.478 0.00 0.00 37.89 3.59
118 119 4.134563 CCAATAGGAAAAACGGGATCGAT 58.865 43.478 0.00 0.00 37.10 3.59
119 120 4.213482 CCAATAGGAAAAACGGGATCGATC 59.787 45.833 17.36 17.36 37.10 3.69
120 121 1.935933 AGGAAAAACGGGATCGATCG 58.064 50.000 18.81 9.36 40.11 3.69
121 122 0.935196 GGAAAAACGGGATCGATCGG 59.065 55.000 18.81 15.12 40.11 4.18
122 123 1.472026 GGAAAAACGGGATCGATCGGA 60.472 52.381 18.81 2.25 40.11 4.55
123 124 2.273557 GAAAAACGGGATCGATCGGAA 58.726 47.619 18.81 0.00 40.11 4.30
124 125 1.648504 AAAACGGGATCGATCGGAAC 58.351 50.000 18.81 8.36 40.11 3.62
161 162 0.793250 GCTCTGTTTCAAGAGGACGC 59.207 55.000 3.57 0.00 43.37 5.19
163 164 1.795286 CTCTGTTTCAAGAGGACGCAC 59.205 52.381 0.00 0.00 40.11 5.34
174 175 2.186903 GACGCACCCCACGATGAT 59.813 61.111 0.00 0.00 0.00 2.45
177 178 2.272146 GCACCCCACGATGATGGT 59.728 61.111 0.00 0.00 38.16 3.55
178 179 4.223800 CACCCCACGATGATGGTG 57.776 61.111 0.17 0.17 42.01 4.17
179 180 4.145436 ACCCCACGATGATGGTGA 57.855 55.556 9.24 0.00 38.16 4.02
183 184 0.806102 CCCACGATGATGGTGACGTC 60.806 60.000 9.11 9.11 46.97 4.34
193 194 4.477975 GTGACGTCGGGAGGCTCG 62.478 72.222 11.62 0.00 0.00 5.03
236 237 2.989639 TCCAGCCGGAGATGTTGG 59.010 61.111 5.05 2.19 35.91 3.77
237 238 2.124570 CCAGCCGGAGATGTTGGG 60.125 66.667 5.05 0.00 0.00 4.12
238 239 2.825836 CAGCCGGAGATGTTGGGC 60.826 66.667 5.05 0.00 45.91 5.36
240 241 4.778143 GCCGGAGATGTTGGGCGT 62.778 66.667 5.05 0.00 35.59 5.68
241 242 2.511600 CCGGAGATGTTGGGCGTC 60.512 66.667 0.00 0.00 0.00 5.19
242 243 2.885644 CGGAGATGTTGGGCGTCG 60.886 66.667 0.00 0.00 38.14 5.12
243 244 2.264794 GGAGATGTTGGGCGTCGT 59.735 61.111 0.00 0.00 38.14 4.34
244 245 2.100631 GGAGATGTTGGGCGTCGTG 61.101 63.158 0.00 0.00 38.14 4.35
245 246 2.740714 GAGATGTTGGGCGTCGTGC 61.741 63.158 0.00 0.00 45.38 5.34
246 247 2.742372 GATGTTGGGCGTCGTGCT 60.742 61.111 0.00 0.00 45.43 4.40
260 261 3.303135 TGCTCTCACGTCCGCCTT 61.303 61.111 0.00 0.00 0.00 4.35
263 264 1.444553 CTCTCACGTCCGCCTTGTC 60.445 63.158 0.00 0.00 0.00 3.18
269 270 3.112709 GTCCGCCTTGTCGCTGTC 61.113 66.667 0.00 0.00 0.00 3.51
273 274 2.358003 GCCTTGTCGCTGTCTGCT 60.358 61.111 0.00 0.00 40.11 4.24
277 278 4.687215 TGTCGCTGTCTGCTGCCC 62.687 66.667 0.00 0.00 40.11 5.36
317 318 2.435586 CTGCGTCTGCTTCCCCTG 60.436 66.667 0.00 0.00 43.34 4.45
324 325 0.839946 TCTGCTTCCCCTGCTATTCC 59.160 55.000 0.00 0.00 0.00 3.01
325 326 0.179006 CTGCTTCCCCTGCTATTCCC 60.179 60.000 0.00 0.00 0.00 3.97
326 327 0.918799 TGCTTCCCCTGCTATTCCCA 60.919 55.000 0.00 0.00 0.00 4.37
327 328 0.480252 GCTTCCCCTGCTATTCCCAT 59.520 55.000 0.00 0.00 0.00 4.00
328 329 1.820877 GCTTCCCCTGCTATTCCCATG 60.821 57.143 0.00 0.00 0.00 3.66
341 342 1.971149 TCCCATGAATCACCCTCTGT 58.029 50.000 0.00 0.00 0.00 3.41
345 346 2.482664 CCATGAATCACCCTCTGTCTCG 60.483 54.545 0.00 0.00 0.00 4.04
351 352 4.180946 CCCTCTGTCTCGTCGCCG 62.181 72.222 0.00 0.00 0.00 6.46
352 353 4.838486 CCTCTGTCTCGTCGCCGC 62.838 72.222 0.00 0.00 0.00 6.53
354 355 3.726631 CTCTGTCTCGTCGCCGCTC 62.727 68.421 0.00 0.00 0.00 5.03
355 356 3.805307 CTGTCTCGTCGCCGCTCT 61.805 66.667 0.00 0.00 0.00 4.09
356 357 3.329688 CTGTCTCGTCGCCGCTCTT 62.330 63.158 0.00 0.00 0.00 2.85
410 411 1.999051 CGGAGCGAAGGATCAAACG 59.001 57.895 0.00 0.00 0.00 3.60
411 412 0.457853 CGGAGCGAAGGATCAAACGA 60.458 55.000 8.40 0.00 0.00 3.85
412 413 1.802880 CGGAGCGAAGGATCAAACGAT 60.803 52.381 8.40 2.64 0.00 3.73
413 414 1.594862 GGAGCGAAGGATCAAACGATG 59.405 52.381 8.40 0.00 0.00 3.84
415 416 2.673368 GAGCGAAGGATCAAACGATGTT 59.327 45.455 8.40 0.00 0.00 2.71
416 417 2.416547 AGCGAAGGATCAAACGATGTTG 59.583 45.455 8.40 0.00 0.00 3.33
417 418 2.774007 CGAAGGATCAAACGATGTTGC 58.226 47.619 0.00 0.00 0.00 4.17
418 419 2.416547 CGAAGGATCAAACGATGTTGCT 59.583 45.455 0.00 0.00 31.47 3.91
419 420 3.484229 CGAAGGATCAAACGATGTTGCTC 60.484 47.826 0.00 0.00 29.14 4.26
420 421 2.002586 AGGATCAAACGATGTTGCTCG 58.997 47.619 0.00 0.00 44.14 5.03
421 422 1.062587 GGATCAAACGATGTTGCTCGG 59.937 52.381 0.00 0.00 42.88 4.63
424 437 0.865111 CAAACGATGTTGCTCGGTGA 59.135 50.000 0.00 0.00 37.66 4.02
431 444 3.733337 GATGTTGCTCGGTGATCCTTAT 58.267 45.455 0.00 0.00 0.00 1.73
434 447 5.092554 TGTTGCTCGGTGATCCTTATTTA 57.907 39.130 0.00 0.00 0.00 1.40
437 450 5.353394 TGCTCGGTGATCCTTATTTAACT 57.647 39.130 0.00 0.00 0.00 2.24
493 506 7.846066 TCCCATTTAATCCATGTTAGTTTTGG 58.154 34.615 0.00 0.00 0.00 3.28
526 539 6.295236 CCCACATTCTCAACACCAAATTGTAT 60.295 38.462 0.00 0.00 0.00 2.29
545 558 3.743714 TGGGACAAGGTGGATTGTG 57.256 52.632 0.00 0.00 43.32 3.33
554 567 0.322546 GGTGGATTGTGGTGGGACTC 60.323 60.000 0.00 0.00 0.00 3.36
573 595 0.526662 CCCACCTACAGTCGTCTGAC 59.473 60.000 16.64 0.00 43.76 3.51
586 608 5.617028 GTCGTCTGACGTTTAATGGATAC 57.383 43.478 27.16 11.93 43.14 2.24
595 617 6.816640 TGACGTTTAATGGATACTGAAGAAGG 59.183 38.462 0.00 0.00 37.61 3.46
596 618 6.708285 ACGTTTAATGGATACTGAAGAAGGT 58.292 36.000 0.00 0.00 37.61 3.50
599 621 8.818057 CGTTTAATGGATACTGAAGAAGGTAAG 58.182 37.037 0.00 0.00 37.61 2.34
609 631 5.877564 ACTGAAGAAGGTAAGCTTAGAATGC 59.122 40.000 6.38 0.00 0.00 3.56
633 655 6.255020 GCATTCCTGTTGCATAATCTTTTGAG 59.745 38.462 0.00 0.00 39.90 3.02
636 658 7.615582 TCCTGTTGCATAATCTTTTGAGTAG 57.384 36.000 0.00 0.00 32.24 2.57
642 664 7.076842 TGCATAATCTTTTGAGTAGTTGAGC 57.923 36.000 0.00 0.00 32.24 4.26
646 668 4.008074 TCTTTTGAGTAGTTGAGCCAGG 57.992 45.455 0.00 0.00 0.00 4.45
725 747 5.296035 GGATTTGAACCCATCTAAACCTACG 59.704 44.000 0.00 0.00 34.44 3.51
814 836 9.665264 CCTAGAAATTCTTGTACAAGTTTCAAC 57.335 33.333 32.16 22.12 36.59 3.18
833 855 5.309638 TCAACCCTATGAATCAAACGAACA 58.690 37.500 0.00 0.00 0.00 3.18
834 856 5.943416 TCAACCCTATGAATCAAACGAACAT 59.057 36.000 0.00 0.00 0.00 2.71
893 916 5.163581 ACGCTTAATGTATGGAGTACGAGTT 60.164 40.000 0.00 0.00 36.01 3.01
894 917 5.398711 CGCTTAATGTATGGAGTACGAGTTC 59.601 44.000 0.00 0.00 36.01 3.01
895 918 5.690857 GCTTAATGTATGGAGTACGAGTTCC 59.309 44.000 0.00 0.00 36.01 3.62
896 919 6.461231 GCTTAATGTATGGAGTACGAGTTCCT 60.461 42.308 0.00 0.00 36.01 3.36
897 920 5.934402 AATGTATGGAGTACGAGTTCCTT 57.066 39.130 0.00 0.00 36.01 3.36
898 921 4.713824 TGTATGGAGTACGAGTTCCTTG 57.286 45.455 0.00 0.00 36.01 3.61
900 923 1.334160 TGGAGTACGAGTTCCTTGCA 58.666 50.000 0.00 0.00 34.48 4.08
901 924 1.000506 TGGAGTACGAGTTCCTTGCAC 59.999 52.381 0.00 0.00 34.48 4.57
902 925 1.000506 GGAGTACGAGTTCCTTGCACA 59.999 52.381 0.00 0.00 0.00 4.57
903 926 2.547218 GGAGTACGAGTTCCTTGCACAA 60.547 50.000 0.00 0.00 0.00 3.33
904 927 3.128349 GAGTACGAGTTCCTTGCACAAA 58.872 45.455 0.00 0.00 0.00 2.83
905 928 3.537580 AGTACGAGTTCCTTGCACAAAA 58.462 40.909 0.00 0.00 0.00 2.44
906 929 3.942748 AGTACGAGTTCCTTGCACAAAAA 59.057 39.130 0.00 0.00 0.00 1.94
1285 1326 9.349145 GTTCAGCCATACGTTGTAAATAAATTT 57.651 29.630 0.00 0.00 0.00 1.82
1286 1327 9.915629 TTCAGCCATACGTTGTAAATAAATTTT 57.084 25.926 0.00 0.00 0.00 1.82
1335 1376 1.898938 CCTGCGTGCACATGTTTATG 58.101 50.000 18.64 0.00 40.24 1.90
1336 1377 1.468127 CCTGCGTGCACATGTTTATGA 59.532 47.619 18.64 0.00 37.73 2.15
1337 1378 2.097954 CCTGCGTGCACATGTTTATGAT 59.902 45.455 18.64 0.00 37.73 2.45
1342 1383 3.699067 GTGCACATGTTTATGATGCCTC 58.301 45.455 13.17 0.00 38.96 4.70
1412 1453 3.051392 GCTCCGGAAACCATTGCCG 62.051 63.158 5.23 0.61 44.42 5.69
1474 1515 6.175471 TCTGAAATGATGTGATGCACTTACT 58.825 36.000 0.00 0.00 35.11 2.24
1497 1538 2.897326 GTTACCACATTGGCCTTCCTTT 59.103 45.455 3.32 0.00 42.67 3.11
1503 1544 1.758862 CATTGGCCTTCCTTTCATCCC 59.241 52.381 3.32 0.00 0.00 3.85
1514 1555 4.344104 TCCTTTCATCCCTTGATTTGACC 58.656 43.478 0.00 0.00 33.34 4.02
1569 1647 4.323417 TGTTCATTCCTCTGCGTTGTTAT 58.677 39.130 0.00 0.00 0.00 1.89
1570 1648 4.154015 TGTTCATTCCTCTGCGTTGTTATG 59.846 41.667 0.00 0.00 0.00 1.90
1571 1649 3.937814 TCATTCCTCTGCGTTGTTATGT 58.062 40.909 0.00 0.00 0.00 2.29
1572 1650 5.079689 TCATTCCTCTGCGTTGTTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
1576 1654 5.847111 TCCTCTGCGTTGTTATGTATAGT 57.153 39.130 0.00 0.00 0.00 2.12
1580 1714 6.637254 CCTCTGCGTTGTTATGTATAGTACTG 59.363 42.308 5.39 0.00 0.00 2.74
1618 1752 1.073923 AGGATTTCCAACTGCGAACCT 59.926 47.619 0.00 0.00 38.89 3.50
1666 1801 2.168521 GCATGCTAACTGTGACTCCCTA 59.831 50.000 11.37 0.00 0.00 3.53
1669 1804 1.757699 GCTAACTGTGACTCCCTAGGG 59.242 57.143 23.22 23.22 0.00 3.53
1712 1847 7.343833 AGGGCAAACAATTCTCATCTATTCATT 59.656 33.333 0.00 0.00 0.00 2.57
1713 1848 7.437267 GGGCAAACAATTCTCATCTATTCATTG 59.563 37.037 0.00 0.00 0.00 2.82
1714 1849 7.042925 GGCAAACAATTCTCATCTATTCATTGC 60.043 37.037 0.00 0.00 34.65 3.56
1715 1850 7.490079 GCAAACAATTCTCATCTATTCATTGCA 59.510 33.333 0.00 0.00 35.06 4.08
1718 1853 8.234136 ACAATTCTCATCTATTCATTGCATGT 57.766 30.769 0.00 0.00 0.00 3.21
1725 1860 5.694231 TCTATTCATTGCATGTATGTGGC 57.306 39.130 8.99 0.00 0.00 5.01
1754 1889 3.244422 ACCAGCTGAAGTATTTCCAACGA 60.244 43.478 17.39 0.00 32.09 3.85
1821 2713 0.918983 TACCATGCTCCTTTCCCAGG 59.081 55.000 0.00 0.00 45.64 4.45
1858 2752 8.989653 TGTATGTTTGATACAGTGTCGATTAA 57.010 30.769 0.00 0.00 40.83 1.40
2035 2929 7.054491 ACACTTCAATTAATGCCAGTTCTTT 57.946 32.000 0.00 0.00 0.00 2.52
2044 2938 9.435688 AATTAATGCCAGTTCTTTGTATTTTCC 57.564 29.630 0.00 0.00 0.00 3.13
2114 3009 3.238597 GGAGAATATGCTCTCAGTCCCT 58.761 50.000 10.68 0.00 43.19 4.20
2186 3081 3.613432 GCAACTGAGGAAAAATCCTGCAG 60.613 47.826 6.78 6.78 40.86 4.41
2204 3099 5.940470 CCTGCAGTTGAGAGGTAGTAAAATT 59.060 40.000 13.81 0.00 0.00 1.82
2247 3142 3.795623 ATCTTTCTGATGGCATTGTGC 57.204 42.857 0.00 0.00 44.08 4.57
2298 3193 2.790433 ACTCCATGCACCAAATACGTT 58.210 42.857 0.00 0.00 0.00 3.99
2340 3235 1.065102 CTGCCTGAATGGATTCTTGCG 59.935 52.381 1.26 0.00 37.05 4.85
2351 3816 3.066380 GGATTCTTGCGGCAAATTGTTT 58.934 40.909 17.13 0.00 0.00 2.83
2369 3841 9.962759 AAATTGTTTCGTTCGTAATACTCATAC 57.037 29.630 0.00 0.00 0.00 2.39
2377 3849 9.049523 TCGTTCGTAATACTCATACACTAGATT 57.950 33.333 0.00 0.00 0.00 2.40
2408 3880 4.108570 TCCACCTCTCCCTTTTATGCTTA 58.891 43.478 0.00 0.00 0.00 3.09
2543 4018 6.978343 AAGTAATTACACAGATTAGCGCAA 57.022 33.333 17.65 1.85 0.00 4.85
2619 4094 5.129634 TGCCTACTGAACTGTGAAATTTGA 58.870 37.500 0.00 0.00 0.00 2.69
2622 4097 5.182001 CCTACTGAACTGTGAAATTTGAGGG 59.818 44.000 0.00 0.00 0.00 4.30
2639 4114 5.450818 TGAGGGGTGCTTAGTTTTATCAT 57.549 39.130 0.00 0.00 0.00 2.45
2687 4162 4.519213 TCCCAACTTATTTACCCACGATG 58.481 43.478 0.00 0.00 0.00 3.84
2753 4228 7.700656 GCTGTTGTAACTTCATGTACTTTTGTT 59.299 33.333 0.00 0.00 0.00 2.83
2816 4298 5.242393 ACATCCCAGTTTTCATGAGTTTCTG 59.758 40.000 0.00 4.21 0.00 3.02
2822 4304 6.444633 CAGTTTTCATGAGTTTCTGAAGCAT 58.555 36.000 7.01 2.52 33.25 3.79
2841 4323 3.254060 CATGAGAGTGAGGTTGGTAACG 58.746 50.000 0.00 0.00 42.51 3.18
2904 4386 8.877864 TTACCCAACATCTCATGACTATTTTT 57.122 30.769 0.00 0.00 0.00 1.94
2922 4404 9.765795 ACTATTTTTACCTCAGCTATCATGTAC 57.234 33.333 0.00 0.00 0.00 2.90
2923 4405 9.988815 CTATTTTTACCTCAGCTATCATGTACT 57.011 33.333 0.00 0.00 0.00 2.73
2924 4406 8.894768 ATTTTTACCTCAGCTATCATGTACTC 57.105 34.615 0.00 0.00 0.00 2.59
2925 4407 6.406692 TTTACCTCAGCTATCATGTACTCC 57.593 41.667 0.00 0.00 0.00 3.85
2926 4408 3.235200 ACCTCAGCTATCATGTACTCCC 58.765 50.000 0.00 0.00 0.00 4.30
2927 4409 3.116939 ACCTCAGCTATCATGTACTCCCT 60.117 47.826 0.00 0.00 0.00 4.20
2928 4410 3.509575 CCTCAGCTATCATGTACTCCCTC 59.490 52.174 0.00 0.00 0.00 4.30
2929 4411 3.501349 TCAGCTATCATGTACTCCCTCC 58.499 50.000 0.00 0.00 0.00 4.30
2930 4412 2.230025 CAGCTATCATGTACTCCCTCCG 59.770 54.545 0.00 0.00 0.00 4.63
2931 4413 2.158445 AGCTATCATGTACTCCCTCCGT 60.158 50.000 0.00 0.00 0.00 4.69
2932 4414 2.229302 GCTATCATGTACTCCCTCCGTC 59.771 54.545 0.00 0.00 0.00 4.79
2933 4415 1.705873 ATCATGTACTCCCTCCGTCC 58.294 55.000 0.00 0.00 0.00 4.79
2934 4416 0.396695 TCATGTACTCCCTCCGTCCC 60.397 60.000 0.00 0.00 0.00 4.46
2935 4417 0.686441 CATGTACTCCCTCCGTCCCA 60.686 60.000 0.00 0.00 0.00 4.37
2936 4418 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
2937 4419 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
2938 4420 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2939 4421 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2940 4422 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2941 4423 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2942 4424 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2943 4425 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2944 4426 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2945 4427 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2946 4428 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2947 4429 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
2948 4430 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2949 4431 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2950 4432 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
2951 4433 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
2952 4434 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
2953 4435 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
2954 4436 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
2955 4437 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
2956 4438 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
2957 4439 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
2958 4440 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
2966 4448 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
2967 4449 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
2968 4450 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
2969 4451 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
2970 4452 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
2971 4453 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
3002 4484 9.798994 ACACTAAAACTTAACTAGATACATCCG 57.201 33.333 0.00 0.00 0.00 4.18
3003 4485 9.798994 CACTAAAACTTAACTAGATACATCCGT 57.201 33.333 0.00 0.00 0.00 4.69
3022 4504 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
3023 4505 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
3025 4507 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
3026 4508 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
3034 4516 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
3035 4517 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3036 4518 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3037 4519 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3038 4520 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3039 4521 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3040 4522 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3041 4523 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3042 4524 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3043 4525 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3044 4526 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3045 4527 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
3046 4528 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3060 4542 6.716173 ACGGAGGGAGTATTTTAGTATCTCTC 59.284 42.308 0.00 0.00 36.88 3.20
3194 4676 7.989741 CCTATTACTCTTGGCCATAATCATAGG 59.010 40.741 6.09 13.75 0.00 2.57
3195 4677 6.763715 TTACTCTTGGCCATAATCATAGGT 57.236 37.500 6.09 2.15 0.00 3.08
3210 4692 5.241403 TCATAGGTTCCAGTGTGTTCATT 57.759 39.130 0.00 0.00 0.00 2.57
3241 4723 5.300752 ACTGCCTTCCAAGATATTATCGTG 58.699 41.667 11.34 11.34 38.30 4.35
3412 4896 0.036732 CAGGGCTACTTCCAACAGCA 59.963 55.000 0.00 0.00 37.02 4.41
3486 4970 3.517100 AGCTATGTTTCCAGAGAAGCTCA 59.483 43.478 0.00 0.00 34.54 4.26
3756 5245 2.688507 TGTTCTCTTGCGAAGGATGAC 58.311 47.619 0.00 0.00 0.00 3.06
4041 5530 4.682320 GCGTGGTAAGGTTTCCTATCATGA 60.682 45.833 0.00 0.00 31.13 3.07
4149 5638 6.620877 TCAACATGTTATCAACTACTCCCT 57.379 37.500 11.53 0.00 0.00 4.20
4152 5641 5.281314 ACATGTTATCAACTACTCCCTCCT 58.719 41.667 0.00 0.00 0.00 3.69
4212 5701 7.478520 GTGTAACCACTTGGCTATATGTTAG 57.521 40.000 0.00 0.00 38.61 2.34
4213 5702 6.482308 GTGTAACCACTTGGCTATATGTTAGG 59.518 42.308 0.00 0.00 38.61 2.69
4233 5722 2.357154 GGTTGGTTCTGGGTGCTGATAT 60.357 50.000 0.00 0.00 0.00 1.63
4278 5767 6.654793 GCTATGAACCACTTAGCTATATGC 57.345 41.667 0.00 0.00 43.99 3.14
4363 5852 6.704937 GGGTTTCTCTGGAACGGTTATTATAG 59.295 42.308 0.00 0.00 35.30 1.31
4397 5958 3.588842 TGGATCCCACACTGAAAAGAGAT 59.411 43.478 9.90 0.00 0.00 2.75
4407 5968 4.874396 CACTGAAAAGAGATGCATCTGCTA 59.126 41.667 33.33 13.18 42.66 3.49
4409 5970 5.942236 ACTGAAAAGAGATGCATCTGCTAAA 59.058 36.000 33.33 13.09 42.66 1.85
4410 5971 6.602406 ACTGAAAAGAGATGCATCTGCTAAAT 59.398 34.615 33.33 17.07 42.66 1.40
4411 5972 7.024340 TGAAAAGAGATGCATCTGCTAAATC 57.976 36.000 33.33 22.59 42.66 2.17
4412 5973 6.600427 TGAAAAGAGATGCATCTGCTAAATCA 59.400 34.615 33.33 24.25 42.66 2.57
4413 5974 6.374565 AAAGAGATGCATCTGCTAAATCAC 57.625 37.500 33.33 15.17 42.66 3.06
4414 5975 5.032327 AGAGATGCATCTGCTAAATCACA 57.968 39.130 33.33 0.00 42.66 3.58
4415 5976 5.622180 AGAGATGCATCTGCTAAATCACAT 58.378 37.500 33.33 4.86 42.66 3.21
4416 5977 6.062749 AGAGATGCATCTGCTAAATCACATT 58.937 36.000 33.33 4.38 42.66 2.71
4417 5978 6.546403 AGAGATGCATCTGCTAAATCACATTT 59.454 34.615 33.33 3.66 42.66 2.32
4418 5979 6.504398 AGATGCATCTGCTAAATCACATTTG 58.496 36.000 28.21 0.00 42.66 2.32
4419 5980 5.900865 TGCATCTGCTAAATCACATTTGA 57.099 34.783 3.53 0.00 42.66 2.69
4420 5981 6.270156 TGCATCTGCTAAATCACATTTGAA 57.730 33.333 3.53 0.00 42.66 2.69
4421 5982 6.869695 TGCATCTGCTAAATCACATTTGAAT 58.130 32.000 3.53 0.00 42.66 2.57
4422 5983 7.324935 TGCATCTGCTAAATCACATTTGAATT 58.675 30.769 3.53 0.00 42.66 2.17
4423 5984 8.468399 TGCATCTGCTAAATCACATTTGAATTA 58.532 29.630 3.53 0.00 42.66 1.40
4424 5985 8.749499 GCATCTGCTAAATCACATTTGAATTAC 58.251 33.333 0.00 0.00 34.91 1.89
4425 5986 9.241317 CATCTGCTAAATCACATTTGAATTACC 57.759 33.333 0.00 0.00 34.61 2.85
4426 5987 7.471721 TCTGCTAAATCACATTTGAATTACCG 58.528 34.615 0.00 0.00 34.61 4.02
4427 5988 7.335673 TCTGCTAAATCACATTTGAATTACCGA 59.664 33.333 0.00 0.00 34.61 4.69
4428 5989 7.821652 TGCTAAATCACATTTGAATTACCGAA 58.178 30.769 0.00 0.00 34.61 4.30
4429 5990 8.300286 TGCTAAATCACATTTGAATTACCGAAA 58.700 29.630 0.00 0.00 34.61 3.46
4430 5991 9.134734 GCTAAATCACATTTGAATTACCGAAAA 57.865 29.630 0.00 0.00 34.61 2.29
4433 5994 8.532977 AATCACATTTGAATTACCGAAAAAGG 57.467 30.769 0.00 0.00 34.61 3.11
4434 5995 5.923684 TCACATTTGAATTACCGAAAAAGGC 59.076 36.000 0.00 0.00 33.69 4.35
4435 5996 5.925969 CACATTTGAATTACCGAAAAAGGCT 59.074 36.000 0.00 0.00 33.69 4.58
4436 5997 6.423604 CACATTTGAATTACCGAAAAAGGCTT 59.576 34.615 0.00 0.00 33.69 4.35
4437 5998 6.645003 ACATTTGAATTACCGAAAAAGGCTTC 59.355 34.615 0.00 0.00 33.69 3.86
4438 5999 6.399639 TTTGAATTACCGAAAAAGGCTTCT 57.600 33.333 0.00 0.00 33.69 2.85
4439 6000 5.371115 TGAATTACCGAAAAAGGCTTCTG 57.629 39.130 0.00 0.00 33.69 3.02
4440 6001 3.850122 ATTACCGAAAAAGGCTTCTGC 57.150 42.857 0.00 0.00 38.76 4.26
4450 6011 4.242602 GCTTCTGCCCCGCTTTAT 57.757 55.556 0.00 0.00 0.00 1.40
4451 6012 3.396951 GCTTCTGCCCCGCTTTATA 57.603 52.632 0.00 0.00 0.00 0.98
4452 6013 1.897560 GCTTCTGCCCCGCTTTATAT 58.102 50.000 0.00 0.00 0.00 0.86
4453 6014 3.053831 GCTTCTGCCCCGCTTTATATA 57.946 47.619 0.00 0.00 0.00 0.86
4454 6015 3.610911 GCTTCTGCCCCGCTTTATATAT 58.389 45.455 0.00 0.00 0.00 0.86
4455 6016 4.766375 GCTTCTGCCCCGCTTTATATATA 58.234 43.478 0.00 0.00 0.00 0.86
4456 6017 5.183228 GCTTCTGCCCCGCTTTATATATAA 58.817 41.667 0.81 0.81 0.00 0.98
4457 6018 5.646360 GCTTCTGCCCCGCTTTATATATAAA 59.354 40.000 15.47 15.47 0.00 1.40
4550 6111 5.582665 GTCAGAAACCTGTATCCATGAGTTC 59.417 44.000 0.00 0.00 33.49 3.01
4561 6123 9.605275 CTGTATCCATGAGTTCTGAATCTTAAA 57.395 33.333 0.00 0.00 0.00 1.52
4627 6189 7.147966 GGTTTATGGAATGGTAGAACCGAAAAT 60.148 37.037 0.00 0.00 42.58 1.82
4699 6261 7.694886 AGTTGAAGTTTCCTTATTAATAGCGC 58.305 34.615 0.00 0.00 0.00 5.92
4702 6264 6.314400 TGAAGTTTCCTTATTAATAGCGCGTT 59.686 34.615 8.43 3.54 0.00 4.84
4826 6388 5.786401 CTGTTGTAGCTGAGGTATTTGTC 57.214 43.478 0.00 0.00 0.00 3.18
4827 6389 4.575885 TGTTGTAGCTGAGGTATTTGTCC 58.424 43.478 0.00 0.00 0.00 4.02
4844 6406 3.950397 TGTCCGATTTTAGGAGCATTGT 58.050 40.909 0.00 0.00 38.65 2.71
4954 6516 2.427095 GTGTGCACTTGAGGACCTTTTT 59.573 45.455 19.41 0.00 0.00 1.94
4985 6547 6.760291 CCTCTAGGTTTGTCTTTCTAGTTGT 58.240 40.000 0.00 0.00 33.09 3.32
5001 6563 8.547967 TTCTAGTTGTCTAGTTGCCTTATTTG 57.452 34.615 2.84 0.00 42.88 2.32
5100 6663 4.788617 ACTAATCCGGATATGGGGCTTAAT 59.211 41.667 19.48 0.00 0.00 1.40
5174 6737 7.772757 AGTTATTTTCTAGGGAGCAAGATTCTG 59.227 37.037 0.00 0.00 0.00 3.02
5188 6751 5.106908 GCAAGATTCTGAGTGGAGTACAAAC 60.107 44.000 0.00 0.00 0.00 2.93
5296 6859 9.467796 CAGTATCTCAGAACCTGGATATGTATA 57.532 37.037 0.00 0.00 31.60 1.47
5297 6860 9.693739 AGTATCTCAGAACCTGGATATGTATAG 57.306 37.037 0.00 0.00 31.60 1.31
5298 6861 9.688091 GTATCTCAGAACCTGGATATGTATAGA 57.312 37.037 0.00 0.00 31.60 1.98
5299 6862 8.588290 ATCTCAGAACCTGGATATGTATAGAC 57.412 38.462 0.00 0.00 31.51 2.59
5300 6863 7.760607 TCTCAGAACCTGGATATGTATAGACT 58.239 38.462 0.00 0.00 31.51 3.24
5301 6864 8.891501 TCTCAGAACCTGGATATGTATAGACTA 58.108 37.037 0.00 0.00 31.51 2.59
5302 6865 9.693739 CTCAGAACCTGGATATGTATAGACTAT 57.306 37.037 0.00 0.00 31.51 2.12
5446 7009 8.589335 TCTGTTGAACTACTTGATGTTTCTAC 57.411 34.615 0.00 0.00 0.00 2.59
5556 7119 3.181451 TGTTTTCTCTGTGCTCTGTCCAT 60.181 43.478 0.00 0.00 0.00 3.41
5574 7137 4.887071 GTCCATAATATTGGTGCTTGTCCA 59.113 41.667 0.00 0.00 38.01 4.02
5656 7234 5.163814 GCCTGTTGTTTCTGCTAACTATGAG 60.164 44.000 0.00 0.00 0.00 2.90
5673 7251 7.125792 ACTATGAGATTACCGAATTCAACCT 57.874 36.000 6.22 0.00 0.00 3.50
5674 7252 7.565680 ACTATGAGATTACCGAATTCAACCTT 58.434 34.615 6.22 0.00 0.00 3.50
5789 7367 0.778078 TTCCCCAATGGTTCCCCTCA 60.778 55.000 0.00 0.00 34.77 3.86
5914 7492 2.418368 AGCATCCACGAAAGCCATAA 57.582 45.000 0.00 0.00 0.00 1.90
6046 7624 4.655963 AGTAATTCTGCTCAAAGCTTGGA 58.344 39.130 2.88 2.88 42.97 3.53
6086 7664 2.487762 TCGTTGCATGAGAATTGTTCCC 59.512 45.455 0.00 0.00 0.00 3.97
6163 7741 7.148154 CCCGTTGAATGGTAATCTCATGTTTTA 60.148 37.037 2.30 0.00 0.00 1.52
6303 7897 1.621992 ACTGAGAACCTGCTCTCGAA 58.378 50.000 0.00 0.00 44.15 3.71
6435 8029 7.435192 CCAAACTTCAAAGGATGACAACTTAAC 59.565 37.037 0.00 0.00 37.92 2.01
6495 8092 3.243234 ACAGAATCAGGCGATAGAAGTCG 60.243 47.826 0.00 0.00 44.14 4.18
6509 8106 3.462021 AGAAGTCGCAGAATGGATAAGC 58.538 45.455 0.00 0.00 39.69 3.09
6769 8366 4.749245 AAAGATGTTTGTAAGTGCTCCG 57.251 40.909 0.00 0.00 0.00 4.63
6771 8368 3.326747 AGATGTTTGTAAGTGCTCCGAC 58.673 45.455 0.00 0.00 0.00 4.79
6774 8371 1.798813 GTTTGTAAGTGCTCCGACCAG 59.201 52.381 0.00 0.00 0.00 4.00
6819 8416 8.030692 TCATGGAAAGAGTGCATATTTTCTTTG 58.969 33.333 13.89 12.56 39.31 2.77
6825 8422 8.814038 AAGAGTGCATATTTTCTTTGACCTAT 57.186 30.769 0.00 0.00 0.00 2.57
6936 8534 0.034670 GGCTGTCATTGCTCTTCCCT 60.035 55.000 0.00 0.00 0.00 4.20
6939 8537 3.549794 GCTGTCATTGCTCTTCCCTTAT 58.450 45.455 0.00 0.00 0.00 1.73
6960 8558 7.068839 CCTTATATGAGGAAGCGGATACTACAT 59.931 40.741 7.81 0.00 39.25 2.29
7054 8652 1.460305 GGGGAGGAGGCTGCATCTA 60.460 63.158 14.38 0.00 0.00 1.98
7109 8707 5.048713 GTGAAGGTAACATTATGCCCTATGC 60.049 44.000 0.00 0.00 39.33 3.14
7137 8735 5.073144 AGACCTGAAAGAACCCATGACTTAA 59.927 40.000 0.00 0.00 34.07 1.85
7193 8791 0.036952 ATCGCCGATTCCATAGCCAG 60.037 55.000 0.00 0.00 0.00 4.85
7194 8792 1.069765 CGCCGATTCCATAGCCAGT 59.930 57.895 0.00 0.00 0.00 4.00
7197 8795 1.271054 GCCGATTCCATAGCCAGTGAT 60.271 52.381 0.00 0.00 0.00 3.06
7297 8895 3.388024 ACTGCTAGAATATCGCTTTGGGA 59.612 43.478 0.00 0.00 0.00 4.37
7314 8912 5.549742 TTGGGATCAAAGCATTCAAAGTT 57.450 34.783 0.00 0.00 0.00 2.66
7356 8954 4.808077 AAACATCGATGCATTAGCTGAG 57.192 40.909 25.11 0.00 42.74 3.35
7358 8956 2.366590 ACATCGATGCATTAGCTGAGGA 59.633 45.455 25.11 0.00 42.74 3.71
7367 8965 3.617045 GCATTAGCTGAGGAGAGCCTATG 60.617 52.174 0.00 0.00 40.73 2.23
7376 8974 4.851639 AGGAGAGCCTATGACAATGTTT 57.148 40.909 0.00 0.00 44.74 2.83
7379 8977 6.904626 AGGAGAGCCTATGACAATGTTTTAT 58.095 36.000 0.00 0.00 44.74 1.40
7380 8978 7.349598 AGGAGAGCCTATGACAATGTTTTATT 58.650 34.615 0.00 0.00 44.74 1.40
7381 8979 8.494433 AGGAGAGCCTATGACAATGTTTTATTA 58.506 33.333 0.00 0.00 44.74 0.98
7404 9002 4.822350 AGATGGATGATCAGAACTTGCATG 59.178 41.667 5.14 0.00 32.86 4.06
7430 9028 5.649782 ATGAGGCCTTGTAAATGAAGTTG 57.350 39.130 6.77 0.00 0.00 3.16
7431 9029 3.826157 TGAGGCCTTGTAAATGAAGTTGG 59.174 43.478 6.77 0.00 0.00 3.77
7432 9030 4.079253 GAGGCCTTGTAAATGAAGTTGGA 58.921 43.478 6.77 0.00 0.00 3.53
7438 9036 3.215151 TGTAAATGAAGTTGGACGGCAA 58.785 40.909 0.00 0.00 0.00 4.52
7462 9060 2.416836 CCAGGATTTGCTGCTGAATGTG 60.417 50.000 0.00 2.22 45.63 3.21
7468 9066 0.609957 TGCTGCTGAATGTGGAAGGG 60.610 55.000 0.00 0.00 0.00 3.95
7487 9085 2.224548 GGGCTATTTAGAGCAACCCGAT 60.225 50.000 0.00 0.00 44.76 4.18
7511 9124 1.723542 GACATCTGCTGTCGTTCACTG 59.276 52.381 0.00 0.00 44.58 3.66
7520 9133 6.039829 TCTGCTGTCGTTCACTGATCTTATAT 59.960 38.462 0.00 0.00 0.00 0.86
7524 9137 7.648112 GCTGTCGTTCACTGATCTTATATGTAA 59.352 37.037 0.00 0.00 0.00 2.41
7593 9206 3.188786 GACCATGCACCGTCGAGC 61.189 66.667 0.00 0.00 0.00 5.03
7598 9211 0.168788 CATGCACCGTCGAGCAAAAT 59.831 50.000 14.64 0.00 44.88 1.82
7636 9249 9.573166 CATGAATTAATCCATACCAACTTAGGA 57.427 33.333 0.00 0.00 0.00 2.94
7644 9257 4.709886 CCATACCAACTTAGGAAAAAGGGG 59.290 45.833 0.00 0.00 33.59 4.79
7662 9275 0.954452 GGAAAACCACAGAGCAGGTG 59.046 55.000 0.00 0.00 38.37 4.00
7703 9316 7.699878 AGGAACCTGAGGTAAAGAACAATATT 58.300 34.615 3.68 0.00 33.12 1.28
7755 9372 6.630444 ATTGTGGATGCAATATCTGACTTC 57.370 37.500 0.00 0.00 37.32 3.01
7784 9401 3.000727 GTGGTAGTGATGCACTGGTAAC 58.999 50.000 10.15 0.67 45.01 2.50
7963 9590 1.525995 GGCCCACGGTCCATACATG 60.526 63.158 0.00 0.00 0.00 3.21
8015 9642 0.693049 AAGTGTTGAAGAGGCGGGAT 59.307 50.000 0.00 0.00 0.00 3.85
8017 9644 1.073923 AGTGTTGAAGAGGCGGGATTT 59.926 47.619 0.00 0.00 0.00 2.17
8042 9669 2.616510 GCTTGTCTTGCTGGGTCTGTAT 60.617 50.000 0.00 0.00 0.00 2.29
8044 9671 1.278985 TGTCTTGCTGGGTCTGTATGG 59.721 52.381 0.00 0.00 0.00 2.74
8045 9672 0.911769 TCTTGCTGGGTCTGTATGGG 59.088 55.000 0.00 0.00 0.00 4.00
8046 9673 0.749454 CTTGCTGGGTCTGTATGGGC 60.749 60.000 0.00 0.00 0.00 5.36
8047 9674 1.496444 TTGCTGGGTCTGTATGGGCA 61.496 55.000 0.00 0.00 0.00 5.36
8048 9675 1.452108 GCTGGGTCTGTATGGGCAC 60.452 63.158 0.00 0.00 0.00 5.01
8049 9676 1.915078 GCTGGGTCTGTATGGGCACT 61.915 60.000 0.00 0.00 0.00 4.40
8069 9696 2.584835 TTTGGTTGCCTGCATCTAGT 57.415 45.000 0.00 0.00 0.00 2.57
8075 9702 3.019564 GTTGCCTGCATCTAGTCCAAAT 58.980 45.455 0.00 0.00 0.00 2.32
8077 9704 4.077300 TGCCTGCATCTAGTCCAAATAG 57.923 45.455 0.00 0.00 0.00 1.73
8094 9721 1.558167 TAGCCCCGTTGGATGCAAGA 61.558 55.000 0.00 0.00 35.39 3.02
8109 9736 1.862827 GCAAGAAAAGCTGCTTGGTTG 59.137 47.619 16.73 18.50 41.29 3.77
8116 9743 1.308998 AGCTGCTTGGTTGTGTACAC 58.691 50.000 19.36 19.36 0.00 2.90
8144 9771 5.584253 TCTCTTTTTCTAGTCCTCATCCG 57.416 43.478 0.00 0.00 0.00 4.18
8163 9790 0.030369 GGGTGGTGCGTCTAGTATCG 59.970 60.000 0.00 0.00 0.00 2.92
8190 9817 2.920645 CGTGTGGAGGCGTGTCTCT 61.921 63.158 1.01 0.00 34.39 3.10
8197 9824 2.048127 GGCGTGTCTCTGGTGGAC 60.048 66.667 0.00 0.00 0.00 4.02
8200 9827 1.290324 CGTGTCTCTGGTGGACCTG 59.710 63.158 0.00 0.00 36.82 4.00
8206 9833 1.694150 TCTCTGGTGGACCTGTCTTTG 59.306 52.381 0.00 0.00 36.48 2.77
8213 9840 2.033424 GTGGACCTGTCTTTGTCTTTGC 59.967 50.000 0.00 0.00 0.00 3.68
8215 9842 3.135712 TGGACCTGTCTTTGTCTTTGCTA 59.864 43.478 0.00 0.00 0.00 3.49
8216 9843 3.748568 GGACCTGTCTTTGTCTTTGCTAG 59.251 47.826 0.00 0.00 0.00 3.42
8218 9845 5.234466 ACCTGTCTTTGTCTTTGCTAGAT 57.766 39.130 0.00 0.00 34.79 1.98
8222 9849 5.858381 TGTCTTTGTCTTTGCTAGATCTGT 58.142 37.500 5.18 0.00 34.79 3.41
8242 9869 1.375551 TCGGATCTGATCGTCGTTCA 58.624 50.000 11.28 5.90 0.00 3.18
8246 9873 3.304257 GGATCTGATCGTCGTTCATCTG 58.696 50.000 11.28 0.61 0.00 2.90
8257 9884 0.093705 GTTCATCTGCGTTCGTGAGC 59.906 55.000 0.00 0.00 0.00 4.26
8258 9885 1.344226 TTCATCTGCGTTCGTGAGCG 61.344 55.000 1.52 1.52 38.09 5.03
8260 9887 1.801913 ATCTGCGTTCGTGAGCGTC 60.802 57.895 7.89 1.64 37.36 5.19
8261 9888 3.470567 CTGCGTTCGTGAGCGTCC 61.471 66.667 7.89 0.00 37.36 4.79
8264 9891 2.805353 CGTTCGTGAGCGTCCAGG 60.805 66.667 0.00 0.00 39.49 4.45
8280 9907 2.774234 TCCAGGTTGGATCCTTCTGATC 59.226 50.000 22.36 0.00 42.67 2.92
8298 9925 5.527582 TCTGATCAACGATACTCTTCATCGA 59.472 40.000 11.31 0.00 46.39 3.59
8310 9937 0.038435 TTCATCGACGGCGGTTGTTA 60.038 50.000 12.58 0.00 38.28 2.41
8315 9942 0.368907 CGACGGCGGTTGTTATTCTG 59.631 55.000 13.24 0.00 0.00 3.02
8316 9943 1.717194 GACGGCGGTTGTTATTCTGA 58.283 50.000 13.24 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 7.822822 GTCAAGAAGTTGCCTACTATTCCTTAA 59.177 37.037 0.00 0.00 35.54 1.85
51 52 7.328737 GTCAAGAAGTTGCCTACTATTCCTTA 58.671 38.462 0.00 0.00 35.54 2.69
53 54 5.338463 GGTCAAGAAGTTGCCTACTATTCCT 60.338 44.000 0.00 0.00 35.54 3.36
55 56 5.488341 TGGTCAAGAAGTTGCCTACTATTC 58.512 41.667 0.00 0.00 35.54 1.75
57 58 5.431765 CATGGTCAAGAAGTTGCCTACTAT 58.568 41.667 0.00 0.00 35.54 2.12
60 61 2.749621 CCATGGTCAAGAAGTTGCCTAC 59.250 50.000 2.57 0.00 33.44 3.18
61 62 2.375174 ACCATGGTCAAGAAGTTGCCTA 59.625 45.455 13.00 0.00 33.44 3.93
62 63 1.145738 ACCATGGTCAAGAAGTTGCCT 59.854 47.619 13.00 0.00 33.44 4.75
64 65 2.485814 GAGACCATGGTCAAGAAGTTGC 59.514 50.000 39.38 15.20 46.76 4.17
65 66 3.743521 TGAGACCATGGTCAAGAAGTTG 58.256 45.455 39.38 1.62 46.76 3.16
66 67 4.137543 GTTGAGACCATGGTCAAGAAGTT 58.862 43.478 39.38 21.80 46.76 2.66
67 68 3.392616 AGTTGAGACCATGGTCAAGAAGT 59.607 43.478 39.38 27.72 46.76 3.01
69 70 3.496692 CCAGTTGAGACCATGGTCAAGAA 60.497 47.826 39.38 26.81 46.76 2.52
70 71 2.038952 CCAGTTGAGACCATGGTCAAGA 59.961 50.000 39.38 24.23 46.76 3.02
72 73 2.054021 TCCAGTTGAGACCATGGTCAA 58.946 47.619 39.38 26.78 46.76 3.18
73 74 1.728323 TCCAGTTGAGACCATGGTCA 58.272 50.000 39.38 22.86 46.76 4.02
75 76 3.222603 GTTTTCCAGTTGAGACCATGGT 58.777 45.455 19.89 19.89 34.32 3.55
76 77 2.558359 GGTTTTCCAGTTGAGACCATGG 59.442 50.000 11.19 11.19 40.31 3.66
77 78 3.221771 TGGTTTTCCAGTTGAGACCATG 58.778 45.455 0.00 0.00 46.22 3.66
78 79 3.593442 TGGTTTTCCAGTTGAGACCAT 57.407 42.857 0.00 0.00 46.22 3.55
90 91 4.281435 TCCCGTTTTTCCTATTGGTTTTCC 59.719 41.667 0.00 0.00 41.14 3.13
91 92 5.456548 TCCCGTTTTTCCTATTGGTTTTC 57.543 39.130 0.00 0.00 34.23 2.29
92 93 5.336134 CGATCCCGTTTTTCCTATTGGTTTT 60.336 40.000 0.00 0.00 34.23 2.43
93 94 4.157105 CGATCCCGTTTTTCCTATTGGTTT 59.843 41.667 0.00 0.00 34.23 3.27
94 95 3.692593 CGATCCCGTTTTTCCTATTGGTT 59.307 43.478 0.00 0.00 34.23 3.67
95 96 3.054948 TCGATCCCGTTTTTCCTATTGGT 60.055 43.478 0.00 0.00 37.05 3.67
96 97 3.537580 TCGATCCCGTTTTTCCTATTGG 58.462 45.455 0.00 0.00 37.05 3.16
97 98 4.084537 CGATCGATCCCGTTTTTCCTATTG 60.085 45.833 19.51 0.00 37.05 1.90
98 99 4.056050 CGATCGATCCCGTTTTTCCTATT 58.944 43.478 19.51 0.00 37.05 1.73
99 100 3.554337 CCGATCGATCCCGTTTTTCCTAT 60.554 47.826 18.66 0.00 37.05 2.57
100 101 2.223876 CCGATCGATCCCGTTTTTCCTA 60.224 50.000 18.66 0.00 37.05 2.94
101 102 1.472728 CCGATCGATCCCGTTTTTCCT 60.473 52.381 18.66 0.00 37.05 3.36
102 103 0.935196 CCGATCGATCCCGTTTTTCC 59.065 55.000 18.66 0.00 37.05 3.13
103 104 1.930567 TCCGATCGATCCCGTTTTTC 58.069 50.000 18.66 0.00 37.05 2.29
104 105 2.004733 GTTCCGATCGATCCCGTTTTT 58.995 47.619 18.66 0.00 37.05 1.94
105 106 1.648504 GTTCCGATCGATCCCGTTTT 58.351 50.000 18.66 0.00 37.05 2.43
106 107 0.526954 CGTTCCGATCGATCCCGTTT 60.527 55.000 18.66 0.00 37.05 3.60
107 108 1.065273 CGTTCCGATCGATCCCGTT 59.935 57.895 18.66 0.00 37.05 4.44
108 109 1.378882 TTCGTTCCGATCGATCCCGT 61.379 55.000 18.66 0.00 37.18 5.28
109 110 0.933509 GTTCGTTCCGATCGATCCCG 60.934 60.000 18.66 15.42 37.18 5.14
110 111 0.384669 AGTTCGTTCCGATCGATCCC 59.615 55.000 18.66 4.63 37.18 3.85
111 112 1.756367 GAGTTCGTTCCGATCGATCC 58.244 55.000 18.66 4.65 37.18 3.36
112 113 1.386961 CGAGTTCGTTCCGATCGATC 58.613 55.000 18.66 15.68 39.63 3.69
113 114 3.528594 CGAGTTCGTTCCGATCGAT 57.471 52.632 18.66 0.00 39.63 3.59
124 125 0.640768 GCGATTTGAGGACGAGTTCG 59.359 55.000 0.00 0.00 46.33 3.95
125 126 1.921230 GAGCGATTTGAGGACGAGTTC 59.079 52.381 0.00 0.00 0.00 3.01
126 127 1.546476 AGAGCGATTTGAGGACGAGTT 59.454 47.619 0.00 0.00 0.00 3.01
141 142 1.063806 CGTCCTCTTGAAACAGAGCG 58.936 55.000 0.00 0.00 39.33 5.03
142 143 0.793250 GCGTCCTCTTGAAACAGAGC 59.207 55.000 0.00 0.00 39.33 4.09
161 162 4.223800 CACCATCATCGTGGGGTG 57.776 61.111 0.00 0.00 43.77 4.61
163 164 1.521457 CGTCACCATCATCGTGGGG 60.521 63.158 0.00 0.00 44.35 4.96
174 175 4.988716 AGCCTCCCGACGTCACCA 62.989 66.667 17.16 0.00 0.00 4.17
178 179 4.176851 GACGAGCCTCCCGACGTC 62.177 72.222 5.18 5.18 45.51 4.34
193 194 1.978617 CCATGTGCACCCTTGGGAC 60.979 63.158 15.69 4.70 0.00 4.46
225 226 2.885644 CGACGCCCAACATCTCCG 60.886 66.667 0.00 0.00 0.00 4.63
232 233 3.112709 GAGAGCACGACGCCCAAC 61.113 66.667 0.00 0.00 44.04 3.77
233 234 3.611674 TGAGAGCACGACGCCCAA 61.612 61.111 0.00 0.00 44.04 4.12
234 235 4.357947 GTGAGAGCACGACGCCCA 62.358 66.667 0.00 0.00 44.04 5.36
242 243 3.575351 AAGGCGGACGTGAGAGCAC 62.575 63.158 0.00 0.00 41.67 4.40
243 244 3.303135 AAGGCGGACGTGAGAGCA 61.303 61.111 0.00 0.00 0.00 4.26
244 245 2.811317 CAAGGCGGACGTGAGAGC 60.811 66.667 0.00 0.00 0.00 4.09
245 246 1.444553 GACAAGGCGGACGTGAGAG 60.445 63.158 3.11 0.00 32.54 3.20
246 247 2.649034 GACAAGGCGGACGTGAGA 59.351 61.111 3.11 0.00 32.54 3.27
247 248 2.805353 CGACAAGGCGGACGTGAG 60.805 66.667 3.11 0.00 32.54 3.51
295 296 3.797546 GAAGCAGACGCAGCAGCC 61.798 66.667 0.00 0.00 42.27 4.85
296 297 3.797546 GGAAGCAGACGCAGCAGC 61.798 66.667 0.00 0.00 42.27 5.25
297 298 3.123620 GGGAAGCAGACGCAGCAG 61.124 66.667 0.00 0.00 42.27 4.24
298 299 4.704833 GGGGAAGCAGACGCAGCA 62.705 66.667 0.00 0.00 42.27 4.41
299 300 4.400961 AGGGGAAGCAGACGCAGC 62.401 66.667 0.00 0.00 42.27 5.25
300 301 2.435586 CAGGGGAAGCAGACGCAG 60.436 66.667 0.00 0.00 42.27 5.18
301 302 4.704833 GCAGGGGAAGCAGACGCA 62.705 66.667 0.00 0.00 42.27 5.24
305 306 0.839946 GGAATAGCAGGGGAAGCAGA 59.160 55.000 0.00 0.00 0.00 4.26
317 318 3.073650 AGAGGGTGATTCATGGGAATAGC 59.926 47.826 0.00 0.00 43.69 2.97
324 325 2.482664 CGAGACAGAGGGTGATTCATGG 60.483 54.545 0.00 0.00 0.00 3.66
325 326 2.167281 ACGAGACAGAGGGTGATTCATG 59.833 50.000 0.00 0.00 0.00 3.07
326 327 2.428890 GACGAGACAGAGGGTGATTCAT 59.571 50.000 0.00 0.00 0.00 2.57
327 328 1.819288 GACGAGACAGAGGGTGATTCA 59.181 52.381 0.00 0.00 0.00 2.57
328 329 1.202200 CGACGAGACAGAGGGTGATTC 60.202 57.143 0.00 0.00 0.00 2.52
345 346 2.811317 CTCCACAAGAGCGGCGAC 60.811 66.667 12.98 3.29 35.31 5.19
404 405 0.865111 CACCGAGCAACATCGTTTGA 59.135 50.000 0.00 0.00 41.12 2.69
408 409 0.460284 GGATCACCGAGCAACATCGT 60.460 55.000 0.00 0.00 41.12 3.73
409 410 0.179100 AGGATCACCGAGCAACATCG 60.179 55.000 0.00 0.00 42.36 3.84
410 411 2.029838 AAGGATCACCGAGCAACATC 57.970 50.000 0.00 0.00 41.83 3.06
411 412 3.845781 ATAAGGATCACCGAGCAACAT 57.154 42.857 0.00 0.00 41.83 2.71
412 413 3.627395 AATAAGGATCACCGAGCAACA 57.373 42.857 0.00 0.00 41.83 3.33
413 414 5.585047 AGTTAAATAAGGATCACCGAGCAAC 59.415 40.000 0.00 0.00 41.83 4.17
415 416 5.116180 CAGTTAAATAAGGATCACCGAGCA 58.884 41.667 0.00 0.00 41.83 4.26
416 417 4.024809 GCAGTTAAATAAGGATCACCGAGC 60.025 45.833 0.00 0.00 41.83 5.03
417 418 5.360591 AGCAGTTAAATAAGGATCACCGAG 58.639 41.667 0.00 0.00 41.83 4.63
418 419 5.128827 AGAGCAGTTAAATAAGGATCACCGA 59.871 40.000 0.00 0.00 41.83 4.69
419 420 5.360591 AGAGCAGTTAAATAAGGATCACCG 58.639 41.667 0.00 0.00 41.83 4.94
420 421 7.501844 AGTAGAGCAGTTAAATAAGGATCACC 58.498 38.462 0.00 0.00 0.00 4.02
421 422 8.950208 AAGTAGAGCAGTTAAATAAGGATCAC 57.050 34.615 0.00 0.00 0.00 3.06
424 437 9.740710 AACAAAGTAGAGCAGTTAAATAAGGAT 57.259 29.630 0.00 0.00 0.00 3.24
431 444 7.227910 CCCACTTAACAAAGTAGAGCAGTTAAA 59.772 37.037 0.00 0.00 35.14 1.52
434 447 5.063880 CCCACTTAACAAAGTAGAGCAGTT 58.936 41.667 0.00 0.00 0.00 3.16
437 450 4.967084 TCCCACTTAACAAAGTAGAGCA 57.033 40.909 0.00 0.00 0.00 4.26
526 539 1.480312 CCACAATCCACCTTGTCCCAA 60.480 52.381 0.00 0.00 37.25 4.12
535 548 0.322546 GAGTCCCACCACAATCCACC 60.323 60.000 0.00 0.00 0.00 4.61
536 549 0.322546 GGAGTCCCACCACAATCCAC 60.323 60.000 0.00 0.00 0.00 4.02
537 550 1.497309 GGGAGTCCCACCACAATCCA 61.497 60.000 24.35 0.00 44.65 3.41
538 551 1.303282 GGGAGTCCCACCACAATCC 59.697 63.158 24.35 0.00 44.65 3.01
554 567 0.526662 GTCAGACGACTGTAGGTGGG 59.473 60.000 14.38 0.00 43.81 4.61
573 595 8.712285 TTACCTTCTTCAGTATCCATTAAACG 57.288 34.615 0.00 0.00 0.00 3.60
586 608 5.877012 TGCATTCTAAGCTTACCTTCTTCAG 59.123 40.000 0.86 0.00 34.95 3.02
595 617 6.261118 CAACAGGAATGCATTCTAAGCTTAC 58.739 40.000 32.48 17.01 37.00 2.34
596 618 5.163622 GCAACAGGAATGCATTCTAAGCTTA 60.164 40.000 32.48 5.94 43.29 3.09
599 621 3.442100 GCAACAGGAATGCATTCTAAGC 58.558 45.455 32.48 24.81 43.29 3.09
609 631 7.318141 ACTCAAAAGATTATGCAACAGGAATG 58.682 34.615 0.00 0.00 0.00 2.67
621 643 6.825721 CCTGGCTCAACTACTCAAAAGATTAT 59.174 38.462 0.00 0.00 0.00 1.28
633 655 2.861147 AAAGGACCTGGCTCAACTAC 57.139 50.000 0.00 0.00 0.00 2.73
699 721 6.652205 AGGTTTAGATGGGTTCAAATCCTA 57.348 37.500 0.00 0.00 0.00 2.94
701 723 5.296035 CGTAGGTTTAGATGGGTTCAAATCC 59.704 44.000 0.00 0.00 0.00 3.01
702 724 5.878669 ACGTAGGTTTAGATGGGTTCAAATC 59.121 40.000 0.00 0.00 0.00 2.17
703 725 5.812286 ACGTAGGTTTAGATGGGTTCAAAT 58.188 37.500 0.00 0.00 0.00 2.32
704 726 5.231702 ACGTAGGTTTAGATGGGTTCAAA 57.768 39.130 0.00 0.00 0.00 2.69
707 729 7.201670 CCAAATTACGTAGGTTTAGATGGGTTC 60.202 40.741 7.45 0.00 0.00 3.62
814 836 8.601845 TGTATATGTTCGTTTGATTCATAGGG 57.398 34.615 0.00 0.00 30.52 3.53
854 876 5.511088 TTAAGCGTCTCTTTCGATTCAAC 57.489 39.130 0.00 0.00 37.96 3.18
872 895 7.040473 AGGAACTCGTACTCCATACATTAAG 57.960 40.000 2.07 0.00 33.83 1.85
878 901 3.119245 TGCAAGGAACTCGTACTCCATAC 60.119 47.826 2.07 0.00 38.49 2.39
941 964 0.328258 AATAGCTGCGTGGGAGGTTT 59.672 50.000 0.00 0.00 0.00 3.27
1021 1044 1.137825 CGAGGTGAAGGAGCGAGAC 59.862 63.158 0.00 0.00 0.00 3.36
1303 1344 0.180406 ACGCAGGCCATAAGGTAAGG 59.820 55.000 5.01 0.00 37.19 2.69
1304 1345 1.299541 CACGCAGGCCATAAGGTAAG 58.700 55.000 5.01 0.00 37.19 2.34
1305 1346 0.746563 GCACGCAGGCCATAAGGTAA 60.747 55.000 5.01 0.00 37.19 2.85
1306 1347 1.153249 GCACGCAGGCCATAAGGTA 60.153 57.895 5.01 0.00 37.19 3.08
1307 1348 2.438434 GCACGCAGGCCATAAGGT 60.438 61.111 5.01 0.00 37.19 3.50
1335 1376 2.588314 CTGCTCCTGCGAGGCATC 60.588 66.667 0.00 0.00 43.34 3.91
1336 1377 4.853050 GCTGCTCCTGCGAGGCAT 62.853 66.667 0.00 0.00 43.34 4.40
1412 1453 1.204704 GCATTGACCCTAAAAGTGGCC 59.795 52.381 0.00 0.00 0.00 5.36
1474 1515 2.916934 AGGAAGGCCAATGTGGTAACTA 59.083 45.455 5.01 0.00 40.46 2.24
1497 1538 4.711355 GGAATTGGTCAAATCAAGGGATGA 59.289 41.667 1.85 0.00 43.67 2.92
1503 1544 7.733402 AAAATGTGGAATTGGTCAAATCAAG 57.267 32.000 1.85 0.00 0.00 3.02
1546 1619 2.783135 ACAACGCAGAGGAATGAACAT 58.217 42.857 0.00 0.00 0.00 2.71
1569 1647 9.642343 ATCAGGAATTCTGTACAGTACTATACA 57.358 33.333 21.99 13.21 43.76 2.29
1571 1649 9.298250 GGATCAGGAATTCTGTACAGTACTATA 57.702 37.037 21.99 0.00 43.76 1.31
1572 1650 7.785028 TGGATCAGGAATTCTGTACAGTACTAT 59.215 37.037 21.99 9.21 43.76 2.12
1576 1654 6.471233 CTGGATCAGGAATTCTGTACAGTA 57.529 41.667 21.99 13.73 43.76 2.74
1618 1752 7.274468 CAGTTTGTGTGTATTTGTTACTGCAAA 59.726 33.333 0.00 0.00 41.77 3.68
1666 1801 7.186268 TGCCCTAAAAGTACATAAATTTCCCT 58.814 34.615 0.00 0.00 0.00 4.20
1669 1804 9.699703 TGTTTGCCCTAAAAGTACATAAATTTC 57.300 29.630 0.00 0.00 0.00 2.17
1712 1847 1.921982 AAAGGTGCCACATACATGCA 58.078 45.000 0.00 0.00 0.00 3.96
1713 1848 2.099098 GGTAAAGGTGCCACATACATGC 59.901 50.000 0.00 0.00 0.00 4.06
1714 1849 3.351740 TGGTAAAGGTGCCACATACATG 58.648 45.455 0.00 0.00 34.08 3.21
1715 1850 3.620488 CTGGTAAAGGTGCCACATACAT 58.380 45.455 0.00 0.00 34.08 2.29
1718 1853 1.633432 AGCTGGTAAAGGTGCCACATA 59.367 47.619 0.00 0.00 34.08 2.29
1754 1889 8.522830 CCAATTCTATGGTTTGTTCAGTACATT 58.477 33.333 0.00 0.00 34.58 2.71
1796 1931 2.659428 GAAAGGAGCATGGTATTGCCT 58.341 47.619 0.00 0.00 43.83 4.75
1858 2752 3.446442 ACATGGCCAGAAGAATGAAGT 57.554 42.857 13.05 0.00 0.00 3.01
2035 2929 7.821652 TGTTAAGAAATGCATCGGAAAATACA 58.178 30.769 0.00 0.00 0.00 2.29
2114 3009 2.082834 TGCCTGGATACCAAGGCAA 58.917 52.632 21.86 11.83 46.53 4.52
2186 3081 7.377766 TCATGCAATTTTACTACCTCTCAAC 57.622 36.000 0.00 0.00 0.00 3.18
2247 3142 6.558771 TTACAACATGAAGACAGATGGTTG 57.441 37.500 0.00 0.00 39.82 3.77
2298 3193 6.646240 GCAGGAATGTTGCAGAATTTAAAGAA 59.354 34.615 0.00 0.00 41.17 2.52
2340 3235 6.081693 AGTATTACGAACGAAACAATTTGCC 58.918 36.000 0.14 0.00 0.00 4.52
2351 3816 8.599055 ATCTAGTGTATGAGTATTACGAACGA 57.401 34.615 0.14 0.00 0.00 3.85
2555 4030 3.834489 AGAGTAGCTAATGTGCTGCAT 57.166 42.857 5.27 0.00 45.83 3.96
2619 4094 5.105351 GCAAATGATAAAACTAAGCACCCCT 60.105 40.000 0.00 0.00 0.00 4.79
2622 4097 5.719173 TGGCAAATGATAAAACTAAGCACC 58.281 37.500 0.00 0.00 0.00 5.01
2667 4142 5.890424 AACATCGTGGGTAAATAAGTTGG 57.110 39.130 0.00 0.00 0.00 3.77
2816 4298 2.289945 ACCAACCTCACTCTCATGCTTC 60.290 50.000 0.00 0.00 0.00 3.86
2822 4304 2.313317 ACGTTACCAACCTCACTCTCA 58.687 47.619 0.00 0.00 0.00 3.27
2841 4323 0.036875 ACAGCCTCTTGCCTGGTTAC 59.963 55.000 0.00 0.00 42.71 2.50
2884 4366 9.166173 TGAGGTAAAAATAGTCATGAGATGTTG 57.834 33.333 0.00 0.00 0.00 3.33
2904 4386 4.106502 AGGGAGTACATGATAGCTGAGGTA 59.893 45.833 0.00 0.00 0.00 3.08
2922 4404 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
2923 4405 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2924 4406 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2925 4407 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2926 4408 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
2927 4409 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2928 4410 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
2929 4411 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
2930 4412 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
2931 4413 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
2932 4414 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
2940 4422 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
2941 4423 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
2942 4424 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
2943 4425 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
2944 4426 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
2945 4427 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
2976 4458 9.798994 CGGATGTATCTAGTTAAGTTTTAGTGT 57.201 33.333 0.00 0.00 0.00 3.55
2977 4459 9.798994 ACGGATGTATCTAGTTAAGTTTTAGTG 57.201 33.333 0.00 0.00 0.00 2.74
2996 4478 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
2997 4479 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
2999 4481 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
3000 4482 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
3008 4490 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3009 4491 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3010 4492 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3011 4493 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3012 4494 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3013 4495 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3014 4496 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3015 4497 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3016 4498 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3017 4499 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3018 4500 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3019 4501 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3020 4502 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3021 4503 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3022 4504 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3023 4505 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3024 4506 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3025 4507 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3026 4508 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3027 4509 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3028 4510 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3029 4511 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3030 4512 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
3031 4513 1.961133 AAAATACTCCCTCCGTCCCA 58.039 50.000 0.00 0.00 0.00 4.37
3032 4514 3.036819 ACTAAAATACTCCCTCCGTCCC 58.963 50.000 0.00 0.00 0.00 4.46
3033 4515 5.774184 AGATACTAAAATACTCCCTCCGTCC 59.226 44.000 0.00 0.00 0.00 4.79
3034 4516 6.716173 AGAGATACTAAAATACTCCCTCCGTC 59.284 42.308 0.00 0.00 0.00 4.79
3035 4517 6.612741 AGAGATACTAAAATACTCCCTCCGT 58.387 40.000 0.00 0.00 0.00 4.69
3036 4518 6.715718 TGAGAGATACTAAAATACTCCCTCCG 59.284 42.308 0.00 0.00 0.00 4.63
3037 4519 7.309560 GCTGAGAGATACTAAAATACTCCCTCC 60.310 44.444 0.00 0.00 0.00 4.30
3038 4520 7.231722 TGCTGAGAGATACTAAAATACTCCCTC 59.768 40.741 0.00 0.00 0.00 4.30
3039 4521 7.069986 TGCTGAGAGATACTAAAATACTCCCT 58.930 38.462 0.00 0.00 0.00 4.20
3040 4522 7.291411 TGCTGAGAGATACTAAAATACTCCC 57.709 40.000 0.00 0.00 0.00 4.30
3060 4542 9.585099 AAAACATGGTGTAATGTAATATTGCTG 57.415 29.630 5.11 0.00 39.89 4.41
3194 4676 4.900635 ACTTGAATGAACACACTGGAAC 57.099 40.909 0.00 0.00 0.00 3.62
3195 4677 4.946772 TCAACTTGAATGAACACACTGGAA 59.053 37.500 0.00 0.00 0.00 3.53
3210 4692 2.172505 TCTTGGAAGGCAGTCAACTTGA 59.827 45.455 0.00 0.00 0.00 3.02
3241 4723 8.030106 CCCTATCAAATCGAAGAGTCCTAATAC 58.970 40.741 0.00 0.00 43.63 1.89
3319 4802 4.418337 GCACACACTGCCCAAAAC 57.582 55.556 0.00 0.00 40.42 2.43
3412 4896 6.599356 TGTGACATGTATAACAGTACCAGT 57.401 37.500 0.00 0.00 0.00 4.00
3450 4934 8.710239 TGGAAACATAGCTATTAGATTGTGGTA 58.290 33.333 2.64 0.00 33.40 3.25
3486 4970 4.333690 AGTTCTTCTCTGCAAATCAGCAT 58.666 39.130 0.00 0.00 44.68 3.79
3756 5245 5.163874 GCAGTGATCTTTGTAAGCTTCTGAG 60.164 44.000 0.00 0.00 0.00 3.35
3793 5282 6.093909 TCACATAGTACACGGTCGAATTCTAA 59.906 38.462 3.52 0.00 0.00 2.10
4041 5530 7.989741 CCCTGAAACTGTATCATCTACAATTCT 59.010 37.037 9.84 0.00 30.81 2.40
4076 5565 9.230122 TCTCATTACATTTTTCTGTATTCTGCA 57.770 29.630 0.00 0.00 31.94 4.41
4077 5566 9.713740 CTCTCATTACATTTTTCTGTATTCTGC 57.286 33.333 0.00 0.00 31.94 4.26
4095 5584 4.726035 ATACCCGTCTCCTCTCTCATTA 57.274 45.455 0.00 0.00 0.00 1.90
4098 5587 3.315596 TCTATACCCGTCTCCTCTCTCA 58.684 50.000 0.00 0.00 0.00 3.27
4200 5689 5.063880 CCAGAACCAACCTAACATATAGCC 58.936 45.833 0.00 0.00 0.00 3.93
4212 5701 0.251341 ATCAGCACCCAGAACCAACC 60.251 55.000 0.00 0.00 0.00 3.77
4213 5702 2.489938 TATCAGCACCCAGAACCAAC 57.510 50.000 0.00 0.00 0.00 3.77
4278 5767 7.558161 TGCAGGTTCATGAAATAGTTGATAG 57.442 36.000 10.35 0.00 0.00 2.08
4296 5785 2.130193 AGGTGGTGATCATATGCAGGT 58.870 47.619 0.00 0.00 0.00 4.00
4397 5958 5.900865 TCAAATGTGATTTAGCAGATGCA 57.099 34.783 7.68 0.00 45.16 3.96
4407 5968 8.987890 CCTTTTTCGGTAATTCAAATGTGATTT 58.012 29.630 0.00 0.00 32.48 2.17
4409 5970 6.589907 GCCTTTTTCGGTAATTCAAATGTGAT 59.410 34.615 0.00 0.00 32.48 3.06
4410 5971 5.923684 GCCTTTTTCGGTAATTCAAATGTGA 59.076 36.000 0.00 0.00 0.00 3.58
4411 5972 5.925969 AGCCTTTTTCGGTAATTCAAATGTG 59.074 36.000 0.00 0.00 0.00 3.21
4412 5973 6.096673 AGCCTTTTTCGGTAATTCAAATGT 57.903 33.333 0.00 0.00 0.00 2.71
4413 5974 6.868339 AGAAGCCTTTTTCGGTAATTCAAATG 59.132 34.615 0.00 0.00 32.33 2.32
4414 5975 6.868339 CAGAAGCCTTTTTCGGTAATTCAAAT 59.132 34.615 0.00 0.00 32.33 2.32
4415 5976 6.212955 CAGAAGCCTTTTTCGGTAATTCAAA 58.787 36.000 0.00 0.00 32.33 2.69
4416 5977 5.768317 CAGAAGCCTTTTTCGGTAATTCAA 58.232 37.500 0.00 0.00 32.33 2.69
4417 5978 4.320935 GCAGAAGCCTTTTTCGGTAATTCA 60.321 41.667 0.00 0.00 33.58 2.57
4418 5979 4.166523 GCAGAAGCCTTTTTCGGTAATTC 58.833 43.478 0.00 0.00 33.58 2.17
4419 5980 4.174411 GCAGAAGCCTTTTTCGGTAATT 57.826 40.909 0.00 0.00 33.58 1.40
4420 5981 3.850122 GCAGAAGCCTTTTTCGGTAAT 57.150 42.857 0.00 0.00 33.58 1.89
4433 5994 1.897560 ATATAAAGCGGGGCAGAAGC 58.102 50.000 0.00 0.00 41.10 3.86
4434 5995 7.308782 CTTTATATATAAAGCGGGGCAGAAG 57.691 40.000 25.10 5.48 41.69 2.85
4453 6014 9.146984 CAAATGTGATGTTGATCTTTGCTTTAT 57.853 29.630 0.00 0.00 0.00 1.40
4454 6015 8.358895 TCAAATGTGATGTTGATCTTTGCTTTA 58.641 29.630 0.00 0.00 0.00 1.85
4455 6016 7.211573 TCAAATGTGATGTTGATCTTTGCTTT 58.788 30.769 0.00 0.00 0.00 3.51
4456 6017 6.751157 TCAAATGTGATGTTGATCTTTGCTT 58.249 32.000 0.00 0.00 0.00 3.91
4457 6018 6.335471 TCAAATGTGATGTTGATCTTTGCT 57.665 33.333 0.00 0.00 0.00 3.91
4458 6019 7.591006 ATTCAAATGTGATGTTGATCTTTGC 57.409 32.000 0.00 0.00 33.90 3.68
4461 6022 9.362539 GCTTAATTCAAATGTGATGTTGATCTT 57.637 29.630 0.00 0.00 33.90 2.40
4462 6023 8.525316 TGCTTAATTCAAATGTGATGTTGATCT 58.475 29.630 0.00 0.00 33.90 2.75
4463 6024 8.692110 TGCTTAATTCAAATGTGATGTTGATC 57.308 30.769 0.00 0.00 33.90 2.92
4464 6025 9.661563 AATGCTTAATTCAAATGTGATGTTGAT 57.338 25.926 0.00 0.00 33.90 2.57
4465 6026 9.491675 AAATGCTTAATTCAAATGTGATGTTGA 57.508 25.926 0.00 0.00 32.48 3.18
4466 6027 9.536558 CAAATGCTTAATTCAAATGTGATGTTG 57.463 29.630 0.00 0.00 32.48 3.33
4467 6028 9.491675 TCAAATGCTTAATTCAAATGTGATGTT 57.508 25.926 0.00 0.00 32.48 2.71
4468 6029 8.928733 GTCAAATGCTTAATTCAAATGTGATGT 58.071 29.630 0.00 0.00 32.48 3.06
4469 6030 9.146984 AGTCAAATGCTTAATTCAAATGTGATG 57.853 29.630 0.00 0.00 32.48 3.07
4550 6111 8.971073 ACCATTCCATAAACCTTTAAGATTCAG 58.029 33.333 0.00 0.00 0.00 3.02
4561 6123 4.472108 TCGGTTCTACCATTCCATAAACCT 59.528 41.667 0.00 0.00 38.47 3.50
4627 6189 7.062322 ACAGATCCAAATTATATTCAGCACCA 58.938 34.615 0.00 0.00 0.00 4.17
4844 6406 7.136822 ACAGTAGGTGGAATCTATAATGCAA 57.863 36.000 0.00 0.00 0.00 4.08
4907 6469 7.010923 CAGATTTGGCTCAAGTTCAGTCTATAC 59.989 40.741 0.00 0.00 0.00 1.47
5001 6563 5.285651 CCTACTTCTGCTGTGCTATAAGAC 58.714 45.833 0.00 0.00 0.00 3.01
5100 6663 3.965379 TCAGACGGGCTTATGTTTGTA 57.035 42.857 0.00 0.00 0.00 2.41
5159 6722 1.558756 CCACTCAGAATCTTGCTCCCT 59.441 52.381 0.00 0.00 0.00 4.20
5174 6737 3.366440 ACTGTCGTTTGTACTCCACTC 57.634 47.619 0.00 0.00 0.00 3.51
5297 6860 9.863845 GGATTAATGTAGAAAGGCTCTATAGTC 57.136 37.037 0.00 0.00 38.91 2.59
5298 6861 9.608718 AGGATTAATGTAGAAAGGCTCTATAGT 57.391 33.333 0.00 0.00 38.91 2.12
5302 6865 9.614792 GAAAAGGATTAATGTAGAAAGGCTCTA 57.385 33.333 0.00 0.00 35.41 2.43
5446 7009 2.796383 CGGACCAATTCTCGTAGCTCAG 60.796 54.545 0.00 0.00 0.00 3.35
5481 7044 2.552743 GTCAACTAACCTTCCAAGTGCC 59.447 50.000 0.00 0.00 0.00 5.01
5556 7119 9.860650 AATAGTTATGGACAAGCACCAATATTA 57.139 29.630 0.00 0.00 40.93 0.98
5621 7199 4.941263 AGAAACAACAGGCGCTTATATTGA 59.059 37.500 7.64 0.00 0.00 2.57
5789 7367 2.571212 TCGTTCACCTGCAAAAGTCAT 58.429 42.857 0.00 0.00 0.00 3.06
5914 7492 7.718272 TTAACGTCAAAGCTGTTATACACTT 57.282 32.000 0.00 0.00 0.00 3.16
6046 7624 5.649782 ACGATGCAGAGGAAATTTTGAAT 57.350 34.783 0.00 0.00 0.00 2.57
6240 7834 8.025445 CCTGGTTTTCTGAAATAATGTCAAGAG 58.975 37.037 3.31 0.00 0.00 2.85
6303 7897 4.399303 CCTGAAGTTTCACTGTCCTGTTTT 59.601 41.667 0.00 0.00 32.90 2.43
6435 8029 5.821470 ACATCAGATGCCATCTTAACTTCAG 59.179 40.000 10.59 0.00 37.58 3.02
6495 8092 4.457257 GGTAATCCAGCTTATCCATTCTGC 59.543 45.833 0.00 0.00 0.00 4.26
6496 8093 5.624159 TGGTAATCCAGCTTATCCATTCTG 58.376 41.667 0.00 0.00 39.03 3.02
6509 8106 3.750371 TCCACTTGTGTTGGTAATCCAG 58.250 45.455 0.00 0.00 45.22 3.86
6544 8141 6.151648 CAGCCTCATCTTTGAAAAATAGGACA 59.848 38.462 0.00 0.00 0.00 4.02
6670 8267 4.163552 TGTCTTGTACTGCTTTCGATACG 58.836 43.478 0.00 0.00 0.00 3.06
6707 8304 7.759489 TTTTAATCTGCTCACCAACTTGTAT 57.241 32.000 0.00 0.00 0.00 2.29
6819 8416 6.109359 ACTGAGTTAGTTCATTGCATAGGTC 58.891 40.000 0.00 0.00 35.67 3.85
6848 8446 4.112634 TGCCTTTCCTGAAAGTAACCAT 57.887 40.909 16.20 0.00 44.66 3.55
6851 8449 6.823689 TGATCTATGCCTTTCCTGAAAGTAAC 59.176 38.462 16.20 7.82 44.66 2.50
6853 8451 6.560003 TGATCTATGCCTTTCCTGAAAGTA 57.440 37.500 16.20 7.36 44.66 2.24
6936 8534 7.630728 GCATGTAGTATCCGCTTCCTCATATAA 60.631 40.741 0.00 0.00 0.00 0.98
6939 8537 4.082190 GCATGTAGTATCCGCTTCCTCATA 60.082 45.833 0.00 0.00 0.00 2.15
6960 8558 1.699083 TGGAAGTCAACTGGAGATGCA 59.301 47.619 0.00 0.00 0.00 3.96
7054 8652 2.412323 CGCAGCAACCAGGCATCAT 61.412 57.895 0.00 0.00 35.83 2.45
7110 8708 4.020128 GTCATGGGTTCTTTCAGGTCTACT 60.020 45.833 0.00 0.00 0.00 2.57
7111 8709 4.020128 AGTCATGGGTTCTTTCAGGTCTAC 60.020 45.833 0.00 0.00 0.00 2.59
7176 8774 1.069765 ACTGGCTATGGAATCGGCG 59.930 57.895 0.00 0.00 37.39 6.46
7193 8791 1.227973 GCGATTGGGGAGGGATCAC 60.228 63.158 0.00 0.00 0.00 3.06
7194 8792 2.452064 GGCGATTGGGGAGGGATCA 61.452 63.158 0.00 0.00 0.00 2.92
7197 8795 2.006415 AATGGCGATTGGGGAGGGA 61.006 57.895 0.00 0.00 0.00 4.20
7297 8895 7.663827 TCATCTTCAACTTTGAATGCTTTGAT 58.336 30.769 4.89 1.48 45.26 2.57
7329 8927 6.746822 CAGCTAATGCATCGATGTTTTTGTTA 59.253 34.615 25.47 13.86 42.74 2.41
7336 8934 3.136763 CCTCAGCTAATGCATCGATGTT 58.863 45.455 25.47 15.57 42.74 2.71
7356 8954 7.573968 AATAAAACATTGTCATAGGCTCTCC 57.426 36.000 0.00 0.00 0.00 3.71
7376 8974 8.212995 TGCAAGTTCTGATCATCCATCTAATAA 58.787 33.333 0.00 0.00 31.92 1.40
7379 8977 5.993055 TGCAAGTTCTGATCATCCATCTAA 58.007 37.500 0.00 0.00 31.92 2.10
7380 8978 5.619132 TGCAAGTTCTGATCATCCATCTA 57.381 39.130 0.00 0.00 31.92 1.98
7381 8979 4.498894 TGCAAGTTCTGATCATCCATCT 57.501 40.909 0.00 0.00 31.92 2.90
7415 9013 3.252215 TGCCGTCCAACTTCATTTACAAG 59.748 43.478 0.00 0.00 0.00 3.16
7417 9015 2.852449 TGCCGTCCAACTTCATTTACA 58.148 42.857 0.00 0.00 0.00 2.41
7423 9021 1.523154 GGCATTGCCGTCCAACTTCA 61.523 55.000 12.82 0.00 39.62 3.02
7424 9022 1.212751 GGCATTGCCGTCCAACTTC 59.787 57.895 12.82 0.00 39.62 3.01
7438 9036 0.323999 TCAGCAGCAAATCCTGGCAT 60.324 50.000 0.00 0.00 33.44 4.40
7462 9060 3.215151 GGTTGCTCTAAATAGCCCTTCC 58.785 50.000 0.00 0.00 42.05 3.46
7468 9066 2.808543 CCATCGGGTTGCTCTAAATAGC 59.191 50.000 0.00 0.00 43.08 2.97
7502 9101 9.863845 TTGTTTACATATAAGATCAGTGAACGA 57.136 29.630 0.00 0.00 33.16 3.85
7524 9137 9.883142 TTCCTTTTCATGTGAAATTAACTTGTT 57.117 25.926 8.82 0.00 42.83 2.83
7539 9152 9.657419 AAAAGCTATTACCATTTCCTTTTCATG 57.343 29.630 0.00 0.00 0.00 3.07
7547 9160 7.010460 GCACATTCAAAAGCTATTACCATTTCC 59.990 37.037 0.00 0.00 0.00 3.13
7587 9200 4.851558 GGTGACATGTTTATTTTGCTCGAC 59.148 41.667 0.00 0.00 0.00 4.20
7636 9249 2.434336 GCTCTGTGGTTTTCCCCTTTTT 59.566 45.455 0.00 0.00 39.73 1.94
7644 9257 0.954452 CCACCTGCTCTGTGGTTTTC 59.046 55.000 10.54 0.00 46.62 2.29
7662 9275 4.058124 GGTTCCTCAATCAAAAAGCAACC 58.942 43.478 0.00 0.00 0.00 3.77
7670 9283 5.576563 TTACCTCAGGTTCCTCAATCAAA 57.423 39.130 0.00 0.00 37.09 2.69
7719 9332 4.622740 GCATCCACAATTTTCCTTCTTTCG 59.377 41.667 0.00 0.00 0.00 3.46
7755 9372 5.235831 CAGTGCATCACTACCACATAATGAG 59.764 44.000 0.00 0.00 43.43 2.90
7784 9401 8.819015 CATTACTTCATCTCATTCACTTCAGAG 58.181 37.037 0.00 0.00 0.00 3.35
7866 9491 4.504132 CTGCCTAGCAACGTCCTC 57.496 61.111 0.00 0.00 38.41 3.71
7963 9590 1.081840 GTGAGCAGCAAAGCCGTTC 60.082 57.895 0.00 0.00 34.23 3.95
8015 9642 1.614903 CCCAGCAAGACAAGCATGAAA 59.385 47.619 0.00 0.00 0.00 2.69
8017 9644 0.111061 ACCCAGCAAGACAAGCATGA 59.889 50.000 0.00 0.00 0.00 3.07
8042 9669 1.382420 AGGCAACCAAAAGTGCCCA 60.382 52.632 10.95 0.00 41.13 5.36
8044 9671 1.595109 GCAGGCAACCAAAAGTGCC 60.595 57.895 6.57 6.57 40.77 5.01
8045 9672 0.249996 ATGCAGGCAACCAAAAGTGC 60.250 50.000 0.00 0.00 37.17 4.40
8046 9673 1.342174 AGATGCAGGCAACCAAAAGTG 59.658 47.619 0.00 0.00 37.17 3.16
8047 9674 1.708341 AGATGCAGGCAACCAAAAGT 58.292 45.000 0.00 0.00 37.17 2.66
8048 9675 2.821969 ACTAGATGCAGGCAACCAAAAG 59.178 45.455 0.00 0.00 37.17 2.27
8049 9676 2.819608 GACTAGATGCAGGCAACCAAAA 59.180 45.455 0.00 0.00 37.17 2.44
8069 9696 2.389042 TCCAACGGGGCTATTTGGA 58.611 52.632 9.30 9.30 45.27 3.53
8075 9702 1.077787 CTTGCATCCAACGGGGCTA 60.078 57.895 0.00 0.00 36.21 3.93
8077 9704 1.531739 TTTCTTGCATCCAACGGGGC 61.532 55.000 0.00 0.00 36.21 5.80
8094 9721 2.757868 TGTACACAACCAAGCAGCTTTT 59.242 40.909 4.38 0.00 0.00 2.27
8109 9736 6.679327 AGAAAAAGAGAACCTTGTGTACAC 57.321 37.500 19.36 19.36 34.79 2.90
8116 9743 6.525629 TGAGGACTAGAAAAAGAGAACCTTG 58.474 40.000 0.00 0.00 34.79 3.61
8127 9754 2.500098 CACCCGGATGAGGACTAGAAAA 59.500 50.000 0.73 0.00 0.00 2.29
8128 9755 2.108168 CACCCGGATGAGGACTAGAAA 58.892 52.381 0.73 0.00 0.00 2.52
8129 9756 1.688311 CCACCCGGATGAGGACTAGAA 60.688 57.143 0.73 0.00 0.00 2.10
8144 9771 0.030369 CGATACTAGACGCACCACCC 59.970 60.000 0.00 0.00 0.00 4.61
8178 9805 2.262915 CCACCAGAGACACGCCTC 59.737 66.667 0.00 0.00 0.00 4.70
8181 9808 2.048127 GGTCCACCAGAGACACGC 60.048 66.667 0.00 0.00 35.89 5.34
8182 9809 1.290324 CAGGTCCACCAGAGACACG 59.710 63.158 0.00 0.00 38.89 4.49
8184 9811 0.188587 AGACAGGTCCACCAGAGACA 59.811 55.000 0.00 0.00 38.89 3.41
8190 9817 1.507140 AGACAAAGACAGGTCCACCA 58.493 50.000 0.00 0.00 38.89 4.17
8197 9824 5.350914 CAGATCTAGCAAAGACAAAGACAGG 59.649 44.000 0.00 0.00 36.93 4.00
8200 9827 6.400515 CGAACAGATCTAGCAAAGACAAAGAC 60.401 42.308 0.00 0.00 36.93 3.01
8206 9833 4.111375 TCCGAACAGATCTAGCAAAGAC 57.889 45.455 0.00 0.00 36.93 3.01
8216 9843 3.560503 GACGATCAGATCCGAACAGATC 58.439 50.000 4.73 2.11 42.57 2.75
8218 9845 1.330829 CGACGATCAGATCCGAACAGA 59.669 52.381 4.73 0.00 0.00 3.41
8222 9849 1.741145 TGAACGACGATCAGATCCGAA 59.259 47.619 14.00 0.14 0.00 4.30
8242 9869 1.801913 GACGCTCACGAACGCAGAT 60.802 57.895 0.00 0.00 43.93 2.90
8246 9873 3.470567 CTGGACGCTCACGAACGC 61.471 66.667 0.00 0.00 43.93 4.84
8260 9887 3.205784 GATCAGAAGGATCCAACCTGG 57.794 52.381 15.82 0.00 45.58 4.45
8275 9902 5.623264 GTCGATGAAGAGTATCGTTGATCAG 59.377 44.000 7.18 0.00 45.55 2.90
8280 9907 3.036633 CCGTCGATGAAGAGTATCGTTG 58.963 50.000 6.11 2.21 45.55 4.10
8281 9908 2.541178 GCCGTCGATGAAGAGTATCGTT 60.541 50.000 6.11 0.00 45.55 3.85
8298 9925 2.006888 CATCAGAATAACAACCGCCGT 58.993 47.619 0.00 0.00 0.00 5.68
8310 9937 2.988010 TAAGACCAGCGCATCAGAAT 57.012 45.000 11.47 0.00 0.00 2.40
8315 9942 0.886490 CCCCATAAGACCAGCGCATC 60.886 60.000 11.47 3.87 0.00 3.91
8316 9943 1.149174 CCCCATAAGACCAGCGCAT 59.851 57.895 11.47 0.00 0.00 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.