Multiple sequence alignment - TraesCS4D01G060000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G060000 chr4D 100.000 5732 0 0 1264 6995 36285297 36279566 0.000000e+00 10586.0
1 TraesCS4D01G060000 chr4D 100.000 1011 0 0 1 1011 36286560 36285550 0.000000e+00 1868.0
2 TraesCS4D01G060000 chr4D 95.025 402 18 1 1 400 36408787 36408386 1.280000e-176 630.0
3 TraesCS4D01G060000 chr4D 94.750 400 21 0 1 400 21991743 21991344 2.140000e-174 623.0
4 TraesCS4D01G060000 chr4D 94.750 400 19 2 1 400 138487435 138487832 7.710000e-174 621.0
5 TraesCS4D01G060000 chr4B 93.924 5777 217 51 1287 6995 52263574 52257864 0.000000e+00 8600.0
6 TraesCS4D01G060000 chr4B 93.731 335 19 2 460 792 52386743 52386409 1.050000e-137 501.0
7 TraesCS4D01G060000 chr4B 95.217 230 6 3 783 1011 52264111 52263886 6.670000e-95 359.0
8 TraesCS4D01G060000 chr4B 95.775 71 2 1 396 466 52387807 52387738 5.730000e-21 113.0
9 TraesCS4D01G060000 chr4B 92.188 64 5 0 1913 1976 52263014 52262951 2.690000e-14 91.6
10 TraesCS4D01G060000 chr4A 96.644 3755 87 17 1264 4993 566522598 566526338 0.000000e+00 6200.0
11 TraesCS4D01G060000 chr4A 93.478 1978 79 20 5046 6995 566526330 566528285 0.000000e+00 2892.0
12 TraesCS4D01G060000 chr4A 86.101 554 42 11 460 1011 566521980 566522500 1.320000e-156 564.0
13 TraesCS4D01G060000 chr4A 95.588 68 2 1 396 463 566521175 566521241 2.670000e-19 108.0
14 TraesCS4D01G060000 chr7D 95.250 400 19 0 1 400 393043415 393043814 9.900000e-178 634.0
15 TraesCS4D01G060000 chr7D 94.527 402 21 1 1 402 211629653 211630053 2.770000e-173 619.0
16 TraesCS4D01G060000 chr7D 85.847 431 56 4 460 889 1327091 1327517 2.970000e-123 453.0
17 TraesCS4D01G060000 chr6D 95.250 400 19 0 1 400 137416357 137415958 9.900000e-178 634.0
18 TraesCS4D01G060000 chr6D 94.750 400 20 1 1 400 290165608 290165210 7.710000e-174 621.0
19 TraesCS4D01G060000 chr5D 94.527 402 20 2 1 400 465857805 465858206 2.770000e-173 619.0
20 TraesCS4D01G060000 chr5D 85.149 101 12 3 3944 4041 165661544 165661644 4.460000e-17 100.0
21 TraesCS4D01G060000 chr1D 94.724 398 21 0 1 398 67817630 67818027 2.770000e-173 619.0
22 TraesCS4D01G060000 chr1D 85.912 433 57 4 460 889 373123675 373123244 6.390000e-125 459.0
23 TraesCS4D01G060000 chr6B 85.280 428 52 8 466 889 712111983 712111563 1.390000e-116 431.0
24 TraesCS4D01G060000 chr5A 83.759 431 64 5 460 887 450196315 450195888 3.040000e-108 403.0
25 TraesCS4D01G060000 chr2B 81.503 173 30 2 701 873 557356523 557356693 2.630000e-29 141.0
26 TraesCS4D01G060000 chr5B 90.426 94 9 0 4858 4951 429072384 429072291 2.650000e-24 124.0
27 TraesCS4D01G060000 chr1B 81.890 127 21 2 3917 4041 174088933 174088807 9.600000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G060000 chr4D 36279566 36286560 6994 True 6227.000000 10586 100.000000 1 6995 2 chr4D.!!$R3 6994
1 TraesCS4D01G060000 chr4B 52257864 52264111 6247 True 3016.866667 8600 93.776333 783 6995 3 chr4B.!!$R1 6212
2 TraesCS4D01G060000 chr4B 52386409 52387807 1398 True 307.000000 501 94.753000 396 792 2 chr4B.!!$R2 396
3 TraesCS4D01G060000 chr4A 566521175 566528285 7110 False 2441.000000 6200 92.952750 396 6995 4 chr4A.!!$F1 6599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.106149 GAATACGGTGGCCCTAGTGG 59.894 60.000 0.0 0.0 37.09 4.00 F
97 98 0.107459 CTAGTGGCTTCTTGGGGAGC 60.107 60.000 0.0 0.0 0.00 4.70 F
195 196 0.475044 ACCGGCTCCACTTTTGGTTA 59.525 50.000 0.0 0.0 44.35 2.85 F
196 197 1.074889 ACCGGCTCCACTTTTGGTTAT 59.925 47.619 0.0 0.0 44.35 1.89 F
255 256 1.185315 ACCTTGCTTGCTTGTGTGTT 58.815 45.000 0.0 0.0 0.00 3.32 F
509 1524 1.202382 GGGAGATCGAAGTTGTACGGG 60.202 57.143 0.0 0.0 0.00 5.28 F
1926 3155 1.226717 GGATGACGACGAGGTGAGC 60.227 63.158 0.0 0.0 0.00 4.26 F
1948 3177 1.301293 GAGTGGGAGGAGCAAAGGG 59.699 63.158 0.0 0.0 0.00 3.95 F
3264 4518 0.032017 AGGGCGTGGTCTAGGATCTT 60.032 55.000 0.0 0.0 0.00 2.40 F
5185 6457 0.751643 AATGGGCAGGGTAACGCATC 60.752 55.000 0.0 0.0 38.37 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1926 3155 0.250234 TTTGCTCCTCCCACTCATCG 59.750 55.000 0.00 0.00 0.00 3.84 R
1948 3177 1.592669 CATCCGCCCGATGTCTGAC 60.593 63.158 0.00 0.00 43.07 3.51 R
2317 3552 5.304101 TGCTACAGGGTTTCATGAATTTTGT 59.696 36.000 9.40 13.23 0.00 2.83 R
2459 3699 6.017109 TGGTCAGACTTTGTGATAGAAAAAGC 60.017 38.462 0.00 0.00 34.88 3.51 R
2475 3715 3.777106 ACACATTCACATGGTCAGACT 57.223 42.857 0.00 0.00 34.27 3.24 R
2706 3946 1.502690 TTACCTGTGGTGTGGACAGT 58.497 50.000 0.00 0.00 39.43 3.55 R
3264 4518 0.320050 TCAACAGTGCCATAGCGTCA 59.680 50.000 0.00 0.00 44.31 4.35 R
4066 5335 1.241165 TGAATGCTGACAGTTGCTGG 58.759 50.000 3.99 0.00 35.51 4.85 R
5473 6745 0.339859 TGCTACCATCCTCCCTCAGT 59.660 55.000 0.00 0.00 0.00 3.41 R
6189 7491 0.107703 TAGCCAGGCCAGTTCATTCG 60.108 55.000 8.22 0.00 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 0.924090 GTGGAATCACGACATCTCGC 59.076 55.000 0.00 0.00 44.33 5.03
45 46 0.530288 TGGAATCACGACATCTCGCA 59.470 50.000 0.00 0.00 44.33 5.10
46 47 1.136891 TGGAATCACGACATCTCGCAT 59.863 47.619 0.00 0.00 44.33 4.73
47 48 2.205074 GGAATCACGACATCTCGCATT 58.795 47.619 0.00 0.00 44.33 3.56
48 49 2.033407 GGAATCACGACATCTCGCATTG 60.033 50.000 0.00 0.00 44.33 2.82
49 50 2.299993 ATCACGACATCTCGCATTGT 57.700 45.000 0.00 0.00 44.33 2.71
50 51 1.349234 TCACGACATCTCGCATTGTG 58.651 50.000 0.00 0.00 44.33 3.33
51 52 1.070821 CACGACATCTCGCATTGTGT 58.929 50.000 0.00 0.00 44.33 3.72
52 53 1.070821 ACGACATCTCGCATTGTGTG 58.929 50.000 0.00 0.00 44.33 3.82
53 54 1.336795 ACGACATCTCGCATTGTGTGA 60.337 47.619 4.61 4.61 44.33 3.58
59 60 3.049674 CGCATTGTGTGAGGGCGT 61.050 61.111 0.00 0.00 42.51 5.68
60 61 2.562912 GCATTGTGTGAGGGCGTG 59.437 61.111 0.00 0.00 0.00 5.34
61 62 2.981560 GCATTGTGTGAGGGCGTGG 61.982 63.158 0.00 0.00 0.00 4.94
62 63 2.034066 ATTGTGTGAGGGCGTGGG 59.966 61.111 0.00 0.00 0.00 4.61
63 64 3.567579 ATTGTGTGAGGGCGTGGGG 62.568 63.158 0.00 0.00 0.00 4.96
65 66 4.394712 GTGTGAGGGCGTGGGGAG 62.395 72.222 0.00 0.00 0.00 4.30
66 67 4.631740 TGTGAGGGCGTGGGGAGA 62.632 66.667 0.00 0.00 0.00 3.71
67 68 3.319198 GTGAGGGCGTGGGGAGAA 61.319 66.667 0.00 0.00 0.00 2.87
68 69 2.285368 TGAGGGCGTGGGGAGAAT 60.285 61.111 0.00 0.00 0.00 2.40
69 70 1.002403 TGAGGGCGTGGGGAGAATA 59.998 57.895 0.00 0.00 0.00 1.75
70 71 1.335132 TGAGGGCGTGGGGAGAATAC 61.335 60.000 0.00 0.00 0.00 1.89
71 72 2.108362 GGGCGTGGGGAGAATACG 59.892 66.667 0.00 0.00 40.52 3.06
72 73 2.108362 GGCGTGGGGAGAATACGG 59.892 66.667 0.00 0.00 38.20 4.02
73 74 2.728435 GGCGTGGGGAGAATACGGT 61.728 63.158 0.00 0.00 38.20 4.83
74 75 1.520787 GCGTGGGGAGAATACGGTG 60.521 63.158 0.00 0.00 38.20 4.94
75 76 1.143183 CGTGGGGAGAATACGGTGG 59.857 63.158 0.00 0.00 34.43 4.61
76 77 1.153229 GTGGGGAGAATACGGTGGC 60.153 63.158 0.00 0.00 0.00 5.01
77 78 2.372074 TGGGGAGAATACGGTGGCC 61.372 63.158 0.00 0.00 0.00 5.36
78 79 2.509422 GGGAGAATACGGTGGCCC 59.491 66.667 0.00 0.00 0.00 5.80
79 80 2.070650 GGGAGAATACGGTGGCCCT 61.071 63.158 0.00 0.00 32.78 5.19
80 81 0.761702 GGGAGAATACGGTGGCCCTA 60.762 60.000 0.00 0.00 32.78 3.53
81 82 0.680061 GGAGAATACGGTGGCCCTAG 59.320 60.000 0.00 0.00 0.00 3.02
82 83 1.411041 GAGAATACGGTGGCCCTAGT 58.589 55.000 0.00 0.00 0.00 2.57
83 84 1.068741 GAGAATACGGTGGCCCTAGTG 59.931 57.143 0.00 0.00 0.00 2.74
84 85 0.106149 GAATACGGTGGCCCTAGTGG 59.894 60.000 0.00 0.00 37.09 4.00
94 95 1.609783 CCCTAGTGGCTTCTTGGGG 59.390 63.158 16.68 11.51 43.38 4.96
95 96 0.914417 CCCTAGTGGCTTCTTGGGGA 60.914 60.000 16.68 0.00 43.38 4.81
96 97 0.543749 CCTAGTGGCTTCTTGGGGAG 59.456 60.000 0.00 0.00 0.00 4.30
97 98 0.107459 CTAGTGGCTTCTTGGGGAGC 60.107 60.000 0.00 0.00 0.00 4.70
98 99 0.840288 TAGTGGCTTCTTGGGGAGCA 60.840 55.000 0.00 0.00 0.00 4.26
99 100 1.000396 GTGGCTTCTTGGGGAGCAT 60.000 57.895 0.00 0.00 0.00 3.79
100 101 0.613012 GTGGCTTCTTGGGGAGCATT 60.613 55.000 0.00 0.00 0.00 3.56
101 102 0.612732 TGGCTTCTTGGGGAGCATTG 60.613 55.000 0.00 0.00 0.00 2.82
102 103 0.613012 GGCTTCTTGGGGAGCATTGT 60.613 55.000 0.00 0.00 0.00 2.71
103 104 0.529378 GCTTCTTGGGGAGCATTGTG 59.471 55.000 0.00 0.00 0.00 3.33
104 105 0.529378 CTTCTTGGGGAGCATTGTGC 59.471 55.000 0.00 0.00 45.46 4.57
105 106 0.899717 TTCTTGGGGAGCATTGTGCC 60.900 55.000 0.00 0.00 46.52 5.01
106 107 1.304713 CTTGGGGAGCATTGTGCCT 60.305 57.895 0.00 0.00 46.52 4.75
107 108 1.304381 TTGGGGAGCATTGTGCCTC 60.304 57.895 0.00 0.00 46.52 4.70
108 109 2.440980 GGGGAGCATTGTGCCTCC 60.441 66.667 10.16 10.16 46.52 4.30
109 110 2.356278 GGGAGCATTGTGCCTCCA 59.644 61.111 16.56 0.00 46.52 3.86
110 111 2.048603 GGGAGCATTGTGCCTCCAC 61.049 63.158 16.56 0.00 46.52 4.02
117 118 4.314440 TGTGCCTCCACACCGCTC 62.314 66.667 0.00 0.00 46.51 5.03
120 121 4.329545 GCCTCCACACCGCTCCAA 62.330 66.667 0.00 0.00 0.00 3.53
121 122 2.358737 CCTCCACACCGCTCCAAC 60.359 66.667 0.00 0.00 0.00 3.77
122 123 2.738521 CTCCACACCGCTCCAACG 60.739 66.667 0.00 0.00 0.00 4.10
143 144 4.099380 GGAGACGTACTTCCTCTCAAAG 57.901 50.000 6.09 0.00 33.38 2.77
145 146 2.826725 AGACGTACTTCCTCTCAAAGGG 59.173 50.000 0.00 0.00 46.23 3.95
146 147 2.824341 GACGTACTTCCTCTCAAAGGGA 59.176 50.000 0.00 0.00 46.23 4.20
147 148 3.236896 ACGTACTTCCTCTCAAAGGGAA 58.763 45.455 0.00 0.00 46.23 3.97
154 155 5.339423 TTCCTCTCAAAGGGAAGGAATTT 57.661 39.130 0.00 0.00 46.23 1.82
155 156 5.339423 TCCTCTCAAAGGGAAGGAATTTT 57.661 39.130 0.00 0.00 46.23 1.82
156 157 5.079643 TCCTCTCAAAGGGAAGGAATTTTG 58.920 41.667 0.00 0.00 46.23 2.44
157 158 4.221482 CCTCTCAAAGGGAAGGAATTTTGG 59.779 45.833 0.00 0.00 42.03 3.28
158 159 4.814967 TCTCAAAGGGAAGGAATTTTGGT 58.185 39.130 0.00 0.00 0.00 3.67
159 160 5.959512 TCTCAAAGGGAAGGAATTTTGGTA 58.040 37.500 0.00 0.00 0.00 3.25
160 161 6.377912 TCTCAAAGGGAAGGAATTTTGGTAA 58.622 36.000 0.00 0.00 0.00 2.85
161 162 6.266786 TCTCAAAGGGAAGGAATTTTGGTAAC 59.733 38.462 0.00 0.00 0.00 2.50
175 176 1.822990 TGGTAACACATCCTCGTCTCC 59.177 52.381 0.00 0.00 46.17 3.71
176 177 1.822990 GGTAACACATCCTCGTCTCCA 59.177 52.381 0.00 0.00 0.00 3.86
177 178 2.416972 GGTAACACATCCTCGTCTCCAC 60.417 54.545 0.00 0.00 0.00 4.02
178 179 0.608640 AACACATCCTCGTCTCCACC 59.391 55.000 0.00 0.00 0.00 4.61
179 180 1.139734 CACATCCTCGTCTCCACCG 59.860 63.158 0.00 0.00 0.00 4.94
180 181 2.052690 ACATCCTCGTCTCCACCGG 61.053 63.158 0.00 0.00 0.00 5.28
181 182 3.148279 ATCCTCGTCTCCACCGGC 61.148 66.667 0.00 0.00 0.00 6.13
182 183 3.663815 ATCCTCGTCTCCACCGGCT 62.664 63.158 0.00 0.00 0.00 5.52
183 184 3.827898 CCTCGTCTCCACCGGCTC 61.828 72.222 0.00 0.00 0.00 4.70
184 185 3.827898 CTCGTCTCCACCGGCTCC 61.828 72.222 0.00 0.00 0.00 4.70
185 186 4.671590 TCGTCTCCACCGGCTCCA 62.672 66.667 0.00 0.00 0.00 3.86
186 187 4.436998 CGTCTCCACCGGCTCCAC 62.437 72.222 0.00 0.00 0.00 4.02
187 188 2.997897 GTCTCCACCGGCTCCACT 60.998 66.667 0.00 0.00 0.00 4.00
188 189 2.203788 TCTCCACCGGCTCCACTT 60.204 61.111 0.00 0.00 0.00 3.16
189 190 1.841556 TCTCCACCGGCTCCACTTT 60.842 57.895 0.00 0.00 0.00 2.66
190 191 1.073199 CTCCACCGGCTCCACTTTT 59.927 57.895 0.00 0.00 0.00 2.27
191 192 1.228124 TCCACCGGCTCCACTTTTG 60.228 57.895 0.00 0.00 0.00 2.44
192 193 2.268076 CCACCGGCTCCACTTTTGG 61.268 63.158 0.00 0.00 45.56 3.28
193 194 1.528309 CACCGGCTCCACTTTTGGT 60.528 57.895 0.00 0.00 44.35 3.67
194 195 1.106944 CACCGGCTCCACTTTTGGTT 61.107 55.000 0.00 0.00 44.35 3.67
195 196 0.475044 ACCGGCTCCACTTTTGGTTA 59.525 50.000 0.00 0.00 44.35 2.85
196 197 1.074889 ACCGGCTCCACTTTTGGTTAT 59.925 47.619 0.00 0.00 44.35 1.89
197 198 1.743394 CCGGCTCCACTTTTGGTTATC 59.257 52.381 0.00 0.00 44.35 1.75
198 199 2.618045 CCGGCTCCACTTTTGGTTATCT 60.618 50.000 0.00 0.00 44.35 1.98
199 200 2.678336 CGGCTCCACTTTTGGTTATCTC 59.322 50.000 0.00 0.00 44.35 2.75
200 201 3.619979 CGGCTCCACTTTTGGTTATCTCT 60.620 47.826 0.00 0.00 44.35 3.10
201 202 4.336280 GGCTCCACTTTTGGTTATCTCTT 58.664 43.478 0.00 0.00 44.35 2.85
202 203 5.497474 GGCTCCACTTTTGGTTATCTCTTA 58.503 41.667 0.00 0.00 44.35 2.10
203 204 5.354513 GGCTCCACTTTTGGTTATCTCTTAC 59.645 44.000 0.00 0.00 44.35 2.34
204 205 5.354513 GCTCCACTTTTGGTTATCTCTTACC 59.645 44.000 0.00 0.00 44.35 2.85
205 206 6.697641 TCCACTTTTGGTTATCTCTTACCT 57.302 37.500 0.00 0.00 44.35 3.08
206 207 7.086685 TCCACTTTTGGTTATCTCTTACCTT 57.913 36.000 0.00 0.00 44.35 3.50
207 208 7.523415 TCCACTTTTGGTTATCTCTTACCTTT 58.477 34.615 0.00 0.00 44.35 3.11
208 209 8.662255 TCCACTTTTGGTTATCTCTTACCTTTA 58.338 33.333 0.00 0.00 44.35 1.85
209 210 9.462606 CCACTTTTGGTTATCTCTTACCTTTAT 57.537 33.333 0.00 0.00 38.23 1.40
215 216 8.276252 TGGTTATCTCTTACCTTTATTTGTGC 57.724 34.615 0.00 0.00 35.41 4.57
216 217 7.885922 TGGTTATCTCTTACCTTTATTTGTGCA 59.114 33.333 0.00 0.00 35.41 4.57
217 218 8.736244 GGTTATCTCTTACCTTTATTTGTGCAA 58.264 33.333 0.00 0.00 0.00 4.08
218 219 9.774742 GTTATCTCTTACCTTTATTTGTGCAAG 57.225 33.333 0.00 0.00 0.00 4.01
219 220 6.254281 TCTCTTACCTTTATTTGTGCAAGC 57.746 37.500 0.00 0.00 0.00 4.01
220 221 6.003950 TCTCTTACCTTTATTTGTGCAAGCT 58.996 36.000 0.00 0.00 0.00 3.74
221 222 6.490040 TCTCTTACCTTTATTTGTGCAAGCTT 59.510 34.615 0.00 0.00 0.00 3.74
222 223 7.663905 TCTCTTACCTTTATTTGTGCAAGCTTA 59.336 33.333 0.00 0.00 0.00 3.09
223 224 8.348285 TCTTACCTTTATTTGTGCAAGCTTAT 57.652 30.769 0.00 0.00 0.00 1.73
224 225 9.456147 TCTTACCTTTATTTGTGCAAGCTTATA 57.544 29.630 0.00 0.00 0.00 0.98
227 228 8.931385 ACCTTTATTTGTGCAAGCTTATATTG 57.069 30.769 0.00 0.00 0.00 1.90
228 229 8.531146 ACCTTTATTTGTGCAAGCTTATATTGT 58.469 29.630 0.00 0.00 0.00 2.71
238 239 9.612620 GTGCAAGCTTATATTGTATTTCATACC 57.387 33.333 0.00 0.00 34.86 2.73
239 240 9.573166 TGCAAGCTTATATTGTATTTCATACCT 57.427 29.630 0.00 0.00 34.86 3.08
243 244 9.799106 AGCTTATATTGTATTTCATACCTTGCT 57.201 29.630 0.00 0.00 34.86 3.91
247 248 6.780457 ATTGTATTTCATACCTTGCTTGCT 57.220 33.333 0.00 0.00 34.86 3.91
248 249 6.588719 TTGTATTTCATACCTTGCTTGCTT 57.411 33.333 0.00 0.00 34.86 3.91
249 250 5.953183 TGTATTTCATACCTTGCTTGCTTG 58.047 37.500 0.00 0.00 34.86 4.01
250 251 5.476599 TGTATTTCATACCTTGCTTGCTTGT 59.523 36.000 0.00 0.00 34.86 3.16
251 252 3.921119 TTCATACCTTGCTTGCTTGTG 57.079 42.857 0.00 0.00 0.00 3.33
252 253 2.862541 TCATACCTTGCTTGCTTGTGT 58.137 42.857 0.00 0.00 0.00 3.72
253 254 2.553602 TCATACCTTGCTTGCTTGTGTG 59.446 45.455 0.00 0.00 0.00 3.82
254 255 2.051334 TACCTTGCTTGCTTGTGTGT 57.949 45.000 0.00 0.00 0.00 3.72
255 256 1.185315 ACCTTGCTTGCTTGTGTGTT 58.815 45.000 0.00 0.00 0.00 3.32
256 257 1.550072 ACCTTGCTTGCTTGTGTGTTT 59.450 42.857 0.00 0.00 0.00 2.83
257 258 1.928503 CCTTGCTTGCTTGTGTGTTTG 59.071 47.619 0.00 0.00 0.00 2.93
258 259 2.609350 CTTGCTTGCTTGTGTGTTTGT 58.391 42.857 0.00 0.00 0.00 2.83
259 260 2.739885 TGCTTGCTTGTGTGTTTGTT 57.260 40.000 0.00 0.00 0.00 2.83
260 261 2.335752 TGCTTGCTTGTGTGTTTGTTG 58.664 42.857 0.00 0.00 0.00 3.33
261 262 2.288702 TGCTTGCTTGTGTGTTTGTTGT 60.289 40.909 0.00 0.00 0.00 3.32
262 263 2.736192 GCTTGCTTGTGTGTTTGTTGTT 59.264 40.909 0.00 0.00 0.00 2.83
263 264 3.423384 GCTTGCTTGTGTGTTTGTTGTTG 60.423 43.478 0.00 0.00 0.00 3.33
264 265 3.377346 TGCTTGTGTGTTTGTTGTTGT 57.623 38.095 0.00 0.00 0.00 3.32
265 266 3.722147 TGCTTGTGTGTTTGTTGTTGTT 58.278 36.364 0.00 0.00 0.00 2.83
266 267 3.492383 TGCTTGTGTGTTTGTTGTTGTTG 59.508 39.130 0.00 0.00 0.00 3.33
267 268 3.664014 GCTTGTGTGTTTGTTGTTGTTGC 60.664 43.478 0.00 0.00 0.00 4.17
268 269 3.097877 TGTGTGTTTGTTGTTGTTGCA 57.902 38.095 0.00 0.00 0.00 4.08
269 270 3.657634 TGTGTGTTTGTTGTTGTTGCAT 58.342 36.364 0.00 0.00 0.00 3.96
270 271 3.677121 TGTGTGTTTGTTGTTGTTGCATC 59.323 39.130 0.00 0.00 0.00 3.91
271 272 3.677121 GTGTGTTTGTTGTTGTTGCATCA 59.323 39.130 0.00 0.00 0.00 3.07
272 273 4.329528 GTGTGTTTGTTGTTGTTGCATCAT 59.670 37.500 0.00 0.00 0.00 2.45
273 274 5.518128 GTGTGTTTGTTGTTGTTGCATCATA 59.482 36.000 0.00 0.00 0.00 2.15
274 275 6.200665 GTGTGTTTGTTGTTGTTGCATCATAT 59.799 34.615 0.00 0.00 0.00 1.78
275 276 7.380870 GTGTGTTTGTTGTTGTTGCATCATATA 59.619 33.333 0.00 0.00 0.00 0.86
276 277 7.594386 TGTGTTTGTTGTTGTTGCATCATATAG 59.406 33.333 0.00 0.00 0.00 1.31
277 278 7.062138 GTGTTTGTTGTTGTTGCATCATATAGG 59.938 37.037 0.00 0.00 0.00 2.57
278 279 6.832520 TTGTTGTTGTTGCATCATATAGGT 57.167 33.333 0.00 0.00 0.00 3.08
279 280 6.832520 TGTTGTTGTTGCATCATATAGGTT 57.167 33.333 0.00 0.00 0.00 3.50
280 281 6.619744 TGTTGTTGTTGCATCATATAGGTTG 58.380 36.000 0.00 0.00 0.00 3.77
281 282 5.247507 TGTTGTTGCATCATATAGGTTGC 57.752 39.130 12.38 12.38 35.67 4.17
282 283 4.949238 TGTTGTTGCATCATATAGGTTGCT 59.051 37.500 18.26 0.00 36.10 3.91
283 284 5.066375 TGTTGTTGCATCATATAGGTTGCTC 59.934 40.000 18.26 12.75 36.10 4.26
284 285 4.779696 TGTTGCATCATATAGGTTGCTCA 58.220 39.130 18.26 14.57 36.10 4.26
285 286 4.576053 TGTTGCATCATATAGGTTGCTCAC 59.424 41.667 18.26 15.10 36.10 3.51
294 295 3.322514 GGTTGCTCACCTAGTTGCA 57.677 52.632 0.00 0.00 43.29 4.08
295 296 1.826385 GGTTGCTCACCTAGTTGCAT 58.174 50.000 0.00 0.00 43.29 3.96
296 297 2.985896 GGTTGCTCACCTAGTTGCATA 58.014 47.619 0.00 0.00 43.29 3.14
297 298 3.545703 GGTTGCTCACCTAGTTGCATAT 58.454 45.455 0.00 0.00 43.29 1.78
298 299 3.561725 GGTTGCTCACCTAGTTGCATATC 59.438 47.826 0.00 0.00 43.29 1.63
299 300 4.446371 GTTGCTCACCTAGTTGCATATCT 58.554 43.478 0.00 0.00 35.27 1.98
300 301 5.453339 GGTTGCTCACCTAGTTGCATATCTA 60.453 44.000 0.00 0.00 43.29 1.98
301 302 5.459536 TGCTCACCTAGTTGCATATCTAG 57.540 43.478 11.63 11.63 34.98 2.43
302 303 5.140454 TGCTCACCTAGTTGCATATCTAGA 58.860 41.667 17.11 0.00 36.66 2.43
303 304 5.010112 TGCTCACCTAGTTGCATATCTAGAC 59.990 44.000 17.11 0.00 36.66 2.59
304 305 5.010112 GCTCACCTAGTTGCATATCTAGACA 59.990 44.000 17.11 0.00 36.66 3.41
305 306 6.461648 GCTCACCTAGTTGCATATCTAGACAA 60.462 42.308 17.11 0.00 36.66 3.18
306 307 6.806751 TCACCTAGTTGCATATCTAGACAAC 58.193 40.000 13.43 13.43 42.08 3.32
307 308 5.986135 CACCTAGTTGCATATCTAGACAACC 59.014 44.000 16.29 3.97 42.61 3.77
308 309 5.900123 ACCTAGTTGCATATCTAGACAACCT 59.100 40.000 16.29 9.28 42.61 3.50
309 310 7.014326 CACCTAGTTGCATATCTAGACAACCTA 59.986 40.741 16.29 9.74 42.61 3.08
310 311 7.730784 ACCTAGTTGCATATCTAGACAACCTAT 59.269 37.037 16.29 5.38 42.61 2.57
311 312 8.589338 CCTAGTTGCATATCTAGACAACCTATT 58.411 37.037 16.29 5.12 42.61 1.73
312 313 9.988815 CTAGTTGCATATCTAGACAACCTATTT 57.011 33.333 16.29 4.84 42.61 1.40
314 315 9.113838 AGTTGCATATCTAGACAACCTATTTTG 57.886 33.333 16.29 0.00 42.61 2.44
315 316 9.109393 GTTGCATATCTAGACAACCTATTTTGA 57.891 33.333 11.17 0.00 37.11 2.69
316 317 9.851686 TTGCATATCTAGACAACCTATTTTGAT 57.148 29.630 0.00 0.00 0.00 2.57
317 318 9.276590 TGCATATCTAGACAACCTATTTTGATG 57.723 33.333 0.00 0.00 0.00 3.07
318 319 8.233190 GCATATCTAGACAACCTATTTTGATGC 58.767 37.037 0.00 0.00 0.00 3.91
319 320 9.499479 CATATCTAGACAACCTATTTTGATGCT 57.501 33.333 0.00 0.00 0.00 3.79
322 323 8.948631 TCTAGACAACCTATTTTGATGCTAAG 57.051 34.615 0.00 0.00 0.00 2.18
323 324 8.540388 TCTAGACAACCTATTTTGATGCTAAGT 58.460 33.333 0.00 0.00 0.00 2.24
324 325 9.167311 CTAGACAACCTATTTTGATGCTAAGTT 57.833 33.333 0.00 0.00 0.00 2.66
325 326 8.409358 AGACAACCTATTTTGATGCTAAGTTT 57.591 30.769 0.00 0.00 0.00 2.66
326 327 9.515226 AGACAACCTATTTTGATGCTAAGTTTA 57.485 29.630 0.00 0.00 0.00 2.01
328 329 9.908152 ACAACCTATTTTGATGCTAAGTTTAAC 57.092 29.630 0.00 0.00 0.00 2.01
337 338 9.897744 TTTGATGCTAAGTTTAACTTGATCAAG 57.102 29.630 29.74 29.74 38.86 3.02
338 339 8.846943 TGATGCTAAGTTTAACTTGATCAAGA 57.153 30.769 36.15 16.53 39.11 3.02
339 340 9.283768 TGATGCTAAGTTTAACTTGATCAAGAA 57.716 29.630 36.15 22.54 39.11 2.52
342 343 9.950680 TGCTAAGTTTAACTTGATCAAGAAAAG 57.049 29.630 36.15 21.81 39.11 2.27
343 344 8.906693 GCTAAGTTTAACTTGATCAAGAAAAGC 58.093 33.333 36.15 27.60 39.11 3.51
353 354 9.822185 ACTTGATCAAGAAAAGCTAAAAATTGT 57.178 25.926 36.15 10.31 40.79 2.71
360 361 9.636965 CAAGAAAAGCTAAAAATTGTTAGTTGC 57.363 29.630 15.37 4.07 34.20 4.17
361 362 8.365399 AGAAAAGCTAAAAATTGTTAGTTGCC 57.635 30.769 15.37 4.63 34.20 4.52
362 363 8.204160 AGAAAAGCTAAAAATTGTTAGTTGCCT 58.796 29.630 15.37 6.43 34.20 4.75
363 364 9.471084 GAAAAGCTAAAAATTGTTAGTTGCCTA 57.529 29.630 15.37 0.00 34.20 3.93
364 365 9.996554 AAAAGCTAAAAATTGTTAGTTGCCTAT 57.003 25.926 15.37 0.00 34.20 2.57
365 366 9.996554 AAAGCTAAAAATTGTTAGTTGCCTATT 57.003 25.926 15.37 0.13 34.20 1.73
366 367 9.639601 AAGCTAAAAATTGTTAGTTGCCTATTC 57.360 29.630 15.37 0.00 34.20 1.75
367 368 8.802267 AGCTAAAAATTGTTAGTTGCCTATTCA 58.198 29.630 15.37 0.00 34.20 2.57
368 369 8.860128 GCTAAAAATTGTTAGTTGCCTATTCAC 58.140 33.333 15.37 0.00 34.20 3.18
369 370 9.353999 CTAAAAATTGTTAGTTGCCTATTCACC 57.646 33.333 7.18 0.00 0.00 4.02
370 371 5.914898 AATTGTTAGTTGCCTATTCACCC 57.085 39.130 0.00 0.00 0.00 4.61
371 372 3.359695 TGTTAGTTGCCTATTCACCCC 57.640 47.619 0.00 0.00 0.00 4.95
372 373 2.025699 TGTTAGTTGCCTATTCACCCCC 60.026 50.000 0.00 0.00 0.00 5.40
394 395 7.569240 CCCCCTCTAGTCAATTATATCAATCC 58.431 42.308 0.00 0.00 0.00 3.01
395 396 7.404396 CCCCCTCTAGTCAATTATATCAATCCT 59.596 40.741 0.00 0.00 0.00 3.24
396 397 8.830741 CCCCTCTAGTCAATTATATCAATCCTT 58.169 37.037 0.00 0.00 0.00 3.36
509 1524 1.202382 GGGAGATCGAAGTTGTACGGG 60.202 57.143 0.00 0.00 0.00 5.28
532 1547 3.246112 TAACCAGGTGGCGGCAGT 61.246 61.111 13.91 3.28 39.32 4.40
743 1785 5.440610 GGAGAGAAATGCTCCTAAAATGGA 58.559 41.667 0.00 0.00 46.70 3.41
850 1893 5.106948 GCTTTTCTCAAGATGACATCGAACA 60.107 40.000 9.77 0.72 0.00 3.18
874 1917 1.398692 GGTTTTCTGTGAACTGCCCA 58.601 50.000 0.00 0.00 0.00 5.36
1335 2564 2.279517 GATTCAGGCGCCGACGAT 60.280 61.111 23.20 13.98 43.93 3.73
1589 2818 1.699054 CCTGAGATTGCCGGGATCCA 61.699 60.000 15.23 0.00 31.68 3.41
1606 2835 3.056938 AGCGCGACTTCTCCGAGT 61.057 61.111 12.10 0.00 0.00 4.18
1744 2973 1.579932 GAGGCTGTCAACGACGAGA 59.420 57.895 0.00 0.00 34.95 4.04
1818 3047 1.230497 GAGGGAGGATGACGAGGGA 59.770 63.158 0.00 0.00 0.00 4.20
1842 3071 2.289002 GCATTACTTGGAGAAGATGGCG 59.711 50.000 0.00 0.00 32.98 5.69
1895 3124 2.361737 GTGGGAGGAGCAAAGGGC 60.362 66.667 0.00 0.00 45.30 5.19
1926 3155 1.226717 GGATGACGACGAGGTGAGC 60.227 63.158 0.00 0.00 0.00 4.26
1948 3177 1.301293 GAGTGGGAGGAGCAAAGGG 59.699 63.158 0.00 0.00 0.00 3.95
2317 3552 4.039124 TGATGCGAGCTTATGAGTTATGGA 59.961 41.667 0.00 0.00 0.00 3.41
2410 3650 6.151144 AGGCTTGTGTTTATGGAGTATGTTTC 59.849 38.462 0.00 0.00 0.00 2.78
2459 3699 3.270027 TGGAACTATCAATTGCACCTCG 58.730 45.455 0.00 0.00 0.00 4.63
2472 3712 2.742053 TGCACCTCGCTTTTTCTATCAC 59.258 45.455 0.00 0.00 43.06 3.06
2473 3713 2.742053 GCACCTCGCTTTTTCTATCACA 59.258 45.455 0.00 0.00 37.77 3.58
2474 3714 3.188460 GCACCTCGCTTTTTCTATCACAA 59.812 43.478 0.00 0.00 37.77 3.33
2475 3715 4.320202 GCACCTCGCTTTTTCTATCACAAA 60.320 41.667 0.00 0.00 37.77 2.83
2497 3737 4.067896 AGTCTGACCATGTGAATGTGTTC 58.932 43.478 3.76 0.00 34.85 3.18
2846 4095 6.843208 TCATTATCTCAGACGATTATCCGAC 58.157 40.000 0.00 0.00 0.00 4.79
2898 4147 7.446931 TCTTTAACATGATTAAGTGGTCTTGCA 59.553 33.333 0.00 0.00 35.36 4.08
2926 4175 9.971922 CTTTCTTTCTTCTTTTGGTCACATATT 57.028 29.630 0.00 0.00 0.00 1.28
2973 4222 6.770746 AAAGGAAGAATGATCCATGAACTG 57.229 37.500 0.00 0.00 39.55 3.16
3017 4266 3.305403 GCCAAGTTTCACTTTCTTAGGCC 60.305 47.826 0.00 0.00 36.03 5.19
3021 4270 3.325716 AGTTTCACTTTCTTAGGCCGGTA 59.674 43.478 1.90 0.00 0.00 4.02
3050 4302 1.899142 ACAAGCCACAACCACACTTTT 59.101 42.857 0.00 0.00 0.00 2.27
3052 4304 3.511934 ACAAGCCACAACCACACTTTTTA 59.488 39.130 0.00 0.00 0.00 1.52
3053 4305 4.111916 CAAGCCACAACCACACTTTTTAG 58.888 43.478 0.00 0.00 0.00 1.85
3054 4306 3.626930 AGCCACAACCACACTTTTTAGA 58.373 40.909 0.00 0.00 0.00 2.10
3055 4307 4.215109 AGCCACAACCACACTTTTTAGAT 58.785 39.130 0.00 0.00 0.00 1.98
3056 4308 4.037923 AGCCACAACCACACTTTTTAGATG 59.962 41.667 0.00 0.00 0.00 2.90
3058 4310 4.582656 CCACAACCACACTTTTTAGATGGA 59.417 41.667 0.00 0.00 34.38 3.41
3264 4518 0.032017 AGGGCGTGGTCTAGGATCTT 60.032 55.000 0.00 0.00 0.00 2.40
3699 4959 3.195825 AGTTCTACTGTCATGTACCAGCC 59.804 47.826 8.89 0.00 31.76 4.85
3727 4987 6.402983 GCATATTAGAACCATGCAGTGCTATC 60.403 42.308 17.60 7.29 43.59 2.08
4066 5335 6.759356 ACATACCTTTTTACTTGTTTTGGTGC 59.241 34.615 0.00 0.00 0.00 5.01
4524 5793 8.365060 AGCTCATATCTAGTGCATATCTTCTT 57.635 34.615 0.00 0.00 0.00 2.52
4812 6083 3.871006 TGCTTATCATCACGTGTTCCATC 59.129 43.478 16.51 0.47 0.00 3.51
4999 6270 4.400884 ACGCATAGTGGATTTTTAATGCCA 59.599 37.500 0.00 0.00 37.10 4.92
5185 6457 0.751643 AATGGGCAGGGTAACGCATC 60.752 55.000 0.00 0.00 38.37 3.91
5269 6541 1.180907 TGCAACACCAGTCAAAGCAA 58.819 45.000 0.00 0.00 0.00 3.91
5384 6656 1.900585 GCGACAACATGCAGCTTCGA 61.901 55.000 4.46 0.00 0.00 3.71
5473 6745 5.450412 GGACAAAACAGTCATCAAAGAGCAA 60.450 40.000 0.00 0.00 40.29 3.91
5658 6930 5.179045 ACGAAATGATCATCATCCAAAGC 57.821 39.130 9.06 0.00 35.76 3.51
5706 6978 1.792367 GAACCGGTCAAAATTGCTTGC 59.208 47.619 8.04 0.00 0.00 4.01
5708 6980 1.412343 ACCGGTCAAAATTGCTTGCTT 59.588 42.857 0.00 0.00 0.00 3.91
5709 6981 1.794116 CCGGTCAAAATTGCTTGCTTG 59.206 47.619 0.00 0.00 0.00 4.01
5759 7032 0.967380 AAGGGAGCAAATTCAGGGCG 60.967 55.000 0.00 0.00 0.00 6.13
5763 7036 0.881118 GAGCAAATTCAGGGCGAACA 59.119 50.000 0.00 0.00 36.12 3.18
5893 7170 7.201696 CCGGTTGGATGCAATGGTAATATATAC 60.202 40.741 1.94 0.00 37.49 1.47
6009 7291 9.534565 TTTCATTCGTTGGTTGATTATTCAAAA 57.465 25.926 1.74 0.00 43.29 2.44
6010 7292 9.534565 TTCATTCGTTGGTTGATTATTCAAAAA 57.465 25.926 1.74 0.00 43.29 1.94
6062 7345 4.039124 GGGAAAAGAGAGAACAAAATGGCA 59.961 41.667 0.00 0.00 0.00 4.92
6077 7361 0.934496 TGGCAACGAGAGAACAAACG 59.066 50.000 0.00 0.00 42.51 3.60
6095 7379 5.529430 ACAAACGAAATGGTGATGACAACTA 59.471 36.000 0.00 0.00 34.39 2.24
6111 7395 8.915871 ATGACAACTATATTTGCAATGACAAC 57.084 30.769 0.00 0.00 0.00 3.32
6112 7396 7.880105 TGACAACTATATTTGCAATGACAACA 58.120 30.769 0.00 0.00 0.00 3.33
6113 7397 7.807433 TGACAACTATATTTGCAATGACAACAC 59.193 33.333 0.00 0.00 0.00 3.32
6127 7417 6.598753 ATGACAACACACTACACTTTGTAC 57.401 37.500 0.00 0.00 30.60 2.90
6155 7445 6.942532 ACAAAATTGTACTGCTTTCTGAGA 57.057 33.333 0.00 0.00 40.16 3.27
6156 7446 6.729187 ACAAAATTGTACTGCTTTCTGAGAC 58.271 36.000 0.00 0.00 40.16 3.36
6178 7480 2.419673 TCATATCCAACAAAGCACAGCG 59.580 45.455 0.00 0.00 0.00 5.18
6189 7491 2.162754 GCACAGCGATGCAAATGGC 61.163 57.895 0.00 0.00 45.39 4.40
6223 7525 4.462834 GCCTGGCTAACAGTTTTCCTAATT 59.537 41.667 12.43 0.00 46.06 1.40
6249 7551 4.019174 ACCTGATGAGGCCAAAGTTATTG 58.981 43.478 5.01 0.00 44.33 1.90
6278 7580 1.227823 CAAGGTGCGACCACAGGAA 60.228 57.895 7.86 0.00 43.88 3.36
6318 7620 2.835431 CTCTCCTGATCGGCCGGT 60.835 66.667 27.83 21.57 0.00 5.28
6408 7710 3.470888 CCCATCTCGGCGACCCTT 61.471 66.667 4.99 0.00 0.00 3.95
6410 7712 2.892425 CATCTCGGCGACCCTTGC 60.892 66.667 4.99 0.00 0.00 4.01
6558 7860 0.460987 GCATCCTGGTGAAGTCCGAG 60.461 60.000 0.00 0.00 0.00 4.63
6619 7924 1.222936 CCCTGCAGGAGGACATGAC 59.777 63.158 34.91 0.00 46.33 3.06
6853 8178 1.490490 ACCACAATGTCAGTCACTGGT 59.510 47.619 4.57 0.00 31.05 4.00
6875 8200 1.375013 GCAGGGCAATGCAAACAGG 60.375 57.895 7.79 0.00 45.77 4.00
6876 8201 1.375013 CAGGGCAATGCAAACAGGC 60.375 57.895 7.79 0.00 0.00 4.85
6877 8202 2.432972 GGGCAATGCAAACAGGCG 60.433 61.111 7.79 0.00 36.28 5.52
6878 8203 3.113979 GGCAATGCAAACAGGCGC 61.114 61.111 7.79 0.00 36.28 6.53
6893 8218 1.595382 GCGCGGCCACATAAGAGAT 60.595 57.895 8.83 0.00 0.00 2.75
6909 8234 0.321919 AGATTCGTGGTGCAGTGCAT 60.322 50.000 22.87 2.32 41.91 3.96
6911 8236 0.890542 ATTCGTGGTGCAGTGCATGT 60.891 50.000 22.87 0.00 41.91 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.625849 ACTATTGGTGCCCTTGGAGG 59.374 55.000 0.00 0.00 34.30 4.30
8 9 1.683011 CCACTATTGGTGCCCTTGGAG 60.683 57.143 0.00 0.00 44.08 3.86
9 10 0.331278 CCACTATTGGTGCCCTTGGA 59.669 55.000 0.00 0.00 44.08 3.53
10 11 0.331278 TCCACTATTGGTGCCCTTGG 59.669 55.000 0.00 0.00 44.35 3.61
11 12 2.214376 TTCCACTATTGGTGCCCTTG 57.786 50.000 0.00 0.00 44.35 3.61
12 13 2.311542 TGATTCCACTATTGGTGCCCTT 59.688 45.455 0.00 0.00 44.35 3.95
13 14 1.922447 TGATTCCACTATTGGTGCCCT 59.078 47.619 0.00 0.00 44.35 5.19
14 15 2.024414 GTGATTCCACTATTGGTGCCC 58.976 52.381 0.00 0.00 44.35 5.36
15 16 1.670811 CGTGATTCCACTATTGGTGCC 59.329 52.381 0.00 0.00 44.35 5.01
16 17 2.351726 GTCGTGATTCCACTATTGGTGC 59.648 50.000 0.00 0.00 44.35 5.01
17 18 3.595173 TGTCGTGATTCCACTATTGGTG 58.405 45.455 0.00 0.00 44.35 4.17
18 19 3.973206 TGTCGTGATTCCACTATTGGT 57.027 42.857 0.00 0.00 44.35 3.67
19 20 4.697514 AGATGTCGTGATTCCACTATTGG 58.302 43.478 0.00 0.00 45.56 3.16
20 21 4.442403 CGAGATGTCGTGATTCCACTATTG 59.558 45.833 3.70 0.00 41.57 1.90
21 22 4.611943 CGAGATGTCGTGATTCCACTATT 58.388 43.478 3.70 0.00 41.57 1.73
22 23 4.230314 CGAGATGTCGTGATTCCACTAT 57.770 45.455 3.70 0.00 41.57 2.12
23 24 3.692791 CGAGATGTCGTGATTCCACTA 57.307 47.619 3.70 0.00 41.57 2.74
24 25 2.568696 CGAGATGTCGTGATTCCACT 57.431 50.000 3.70 0.00 41.57 4.00
35 36 1.662629 CCTCACACAATGCGAGATGTC 59.337 52.381 0.00 0.00 28.37 3.06
36 37 1.676916 CCCTCACACAATGCGAGATGT 60.677 52.381 0.00 0.00 28.37 3.06
37 38 1.012086 CCCTCACACAATGCGAGATG 58.988 55.000 0.00 0.00 28.37 2.90
38 39 0.745845 GCCCTCACACAATGCGAGAT 60.746 55.000 0.00 0.00 28.37 2.75
39 40 1.375908 GCCCTCACACAATGCGAGA 60.376 57.895 0.00 0.00 28.37 4.04
40 41 3.181367 GCCCTCACACAATGCGAG 58.819 61.111 0.00 0.00 0.00 5.03
43 44 2.562912 CACGCCCTCACACAATGC 59.437 61.111 0.00 0.00 0.00 3.56
44 45 2.334946 CCCACGCCCTCACACAATG 61.335 63.158 0.00 0.00 0.00 2.82
45 46 2.034066 CCCACGCCCTCACACAAT 59.966 61.111 0.00 0.00 0.00 2.71
46 47 4.263572 CCCCACGCCCTCACACAA 62.264 66.667 0.00 0.00 0.00 3.33
48 49 4.394712 CTCCCCACGCCCTCACAC 62.395 72.222 0.00 0.00 0.00 3.82
49 50 3.993837 TATTCTCCCCACGCCCTCACA 62.994 57.143 0.00 0.00 0.00 3.58
50 51 1.335132 TATTCTCCCCACGCCCTCAC 61.335 60.000 0.00 0.00 0.00 3.51
51 52 1.002403 TATTCTCCCCACGCCCTCA 59.998 57.895 0.00 0.00 0.00 3.86
52 53 1.446366 GTATTCTCCCCACGCCCTC 59.554 63.158 0.00 0.00 0.00 4.30
53 54 2.432300 CGTATTCTCCCCACGCCCT 61.432 63.158 0.00 0.00 0.00 5.19
54 55 2.108362 CGTATTCTCCCCACGCCC 59.892 66.667 0.00 0.00 0.00 6.13
55 56 2.108362 CCGTATTCTCCCCACGCC 59.892 66.667 0.00 0.00 34.42 5.68
56 57 1.520787 CACCGTATTCTCCCCACGC 60.521 63.158 0.00 0.00 34.42 5.34
57 58 1.143183 CCACCGTATTCTCCCCACG 59.857 63.158 0.00 0.00 35.50 4.94
58 59 1.153229 GCCACCGTATTCTCCCCAC 60.153 63.158 0.00 0.00 0.00 4.61
59 60 2.372074 GGCCACCGTATTCTCCCCA 61.372 63.158 0.00 0.00 0.00 4.96
60 61 2.509422 GGCCACCGTATTCTCCCC 59.491 66.667 0.00 0.00 0.00 4.81
61 62 0.761702 TAGGGCCACCGTATTCTCCC 60.762 60.000 6.18 0.00 43.47 4.30
62 63 0.680061 CTAGGGCCACCGTATTCTCC 59.320 60.000 6.18 0.00 43.47 3.71
63 64 1.068741 CACTAGGGCCACCGTATTCTC 59.931 57.143 6.18 0.00 43.47 2.87
64 65 1.120530 CACTAGGGCCACCGTATTCT 58.879 55.000 6.18 0.00 43.47 2.40
65 66 0.106149 CCACTAGGGCCACCGTATTC 59.894 60.000 6.18 0.00 43.47 1.75
66 67 2.218066 CCACTAGGGCCACCGTATT 58.782 57.895 6.18 0.00 43.47 1.89
67 68 3.965660 CCACTAGGGCCACCGTAT 58.034 61.111 6.18 0.00 43.47 3.06
76 77 0.914417 TCCCCAAGAAGCCACTAGGG 60.914 60.000 0.00 8.55 40.85 3.53
77 78 0.543749 CTCCCCAAGAAGCCACTAGG 59.456 60.000 0.00 0.00 38.23 3.02
78 79 0.107459 GCTCCCCAAGAAGCCACTAG 60.107 60.000 0.00 0.00 0.00 2.57
79 80 0.840288 TGCTCCCCAAGAAGCCACTA 60.840 55.000 0.00 0.00 0.00 2.74
80 81 1.504275 ATGCTCCCCAAGAAGCCACT 61.504 55.000 0.00 0.00 0.00 4.00
81 82 0.613012 AATGCTCCCCAAGAAGCCAC 60.613 55.000 0.00 0.00 0.00 5.01
82 83 0.612732 CAATGCTCCCCAAGAAGCCA 60.613 55.000 0.00 0.00 0.00 4.75
83 84 0.613012 ACAATGCTCCCCAAGAAGCC 60.613 55.000 0.00 0.00 0.00 4.35
84 85 0.529378 CACAATGCTCCCCAAGAAGC 59.471 55.000 0.00 0.00 0.00 3.86
85 86 0.529378 GCACAATGCTCCCCAAGAAG 59.471 55.000 0.00 0.00 40.96 2.85
86 87 0.899717 GGCACAATGCTCCCCAAGAA 60.900 55.000 0.13 0.00 44.28 2.52
87 88 1.304381 GGCACAATGCTCCCCAAGA 60.304 57.895 0.13 0.00 44.28 3.02
88 89 1.304713 AGGCACAATGCTCCCCAAG 60.305 57.895 0.13 0.00 44.28 3.61
89 90 1.304381 GAGGCACAATGCTCCCCAA 60.304 57.895 0.13 0.00 44.28 4.12
90 91 2.356278 GAGGCACAATGCTCCCCA 59.644 61.111 0.13 0.00 44.28 4.96
91 92 2.440980 GGAGGCACAATGCTCCCC 60.441 66.667 0.13 0.00 44.28 4.81
92 93 2.048603 GTGGAGGCACAATGCTCCC 61.049 63.158 13.32 9.63 44.28 4.30
93 94 1.303561 TGTGGAGGCACAATGCTCC 60.304 57.895 0.13 6.56 44.28 4.70
94 95 1.589716 GGTGTGGAGGCACAATGCTC 61.590 60.000 0.13 0.00 44.28 4.26
95 96 1.604593 GGTGTGGAGGCACAATGCT 60.605 57.895 0.13 0.00 44.28 3.79
96 97 2.964978 GGTGTGGAGGCACAATGC 59.035 61.111 0.00 0.00 44.08 3.56
97 98 2.981560 GCGGTGTGGAGGCACAATG 61.982 63.158 0.00 0.00 40.89 2.82
98 99 2.672996 GCGGTGTGGAGGCACAAT 60.673 61.111 0.00 0.00 40.89 2.71
99 100 3.825160 GAGCGGTGTGGAGGCACAA 62.825 63.158 0.00 0.00 40.89 3.33
100 101 4.314440 GAGCGGTGTGGAGGCACA 62.314 66.667 0.00 0.00 40.89 4.57
103 104 4.329545 TTGGAGCGGTGTGGAGGC 62.330 66.667 0.00 0.00 0.00 4.70
104 105 2.358737 GTTGGAGCGGTGTGGAGG 60.359 66.667 0.00 0.00 0.00 4.30
105 106 2.738521 CGTTGGAGCGGTGTGGAG 60.739 66.667 0.00 0.00 0.00 3.86
106 107 4.308458 CCGTTGGAGCGGTGTGGA 62.308 66.667 0.00 0.00 46.11 4.02
134 135 4.221482 CCAAAATTCCTTCCCTTTGAGAGG 59.779 45.833 0.00 0.00 45.86 3.69
135 136 4.835056 ACCAAAATTCCTTCCCTTTGAGAG 59.165 41.667 0.00 0.00 31.77 3.20
136 137 4.814967 ACCAAAATTCCTTCCCTTTGAGA 58.185 39.130 0.00 0.00 31.77 3.27
137 138 6.041523 TGTTACCAAAATTCCTTCCCTTTGAG 59.958 38.462 0.00 0.00 31.77 3.02
138 139 5.900123 TGTTACCAAAATTCCTTCCCTTTGA 59.100 36.000 0.00 0.00 31.77 2.69
139 140 5.989168 GTGTTACCAAAATTCCTTCCCTTTG 59.011 40.000 0.00 0.00 0.00 2.77
140 141 5.663556 TGTGTTACCAAAATTCCTTCCCTTT 59.336 36.000 0.00 0.00 0.00 3.11
141 142 5.212745 TGTGTTACCAAAATTCCTTCCCTT 58.787 37.500 0.00 0.00 0.00 3.95
142 143 4.810345 TGTGTTACCAAAATTCCTTCCCT 58.190 39.130 0.00 0.00 0.00 4.20
143 144 5.337250 GGATGTGTTACCAAAATTCCTTCCC 60.337 44.000 0.00 0.00 0.00 3.97
144 145 5.480422 AGGATGTGTTACCAAAATTCCTTCC 59.520 40.000 0.00 0.00 0.00 3.46
145 146 6.590234 AGGATGTGTTACCAAAATTCCTTC 57.410 37.500 0.00 0.00 0.00 3.46
146 147 5.183140 CGAGGATGTGTTACCAAAATTCCTT 59.817 40.000 0.00 0.00 0.00 3.36
147 148 4.700213 CGAGGATGTGTTACCAAAATTCCT 59.300 41.667 0.00 0.00 0.00 3.36
148 149 4.457949 ACGAGGATGTGTTACCAAAATTCC 59.542 41.667 0.00 0.00 0.00 3.01
149 150 5.411669 AGACGAGGATGTGTTACCAAAATTC 59.588 40.000 0.00 0.00 0.00 2.17
150 151 5.313712 AGACGAGGATGTGTTACCAAAATT 58.686 37.500 0.00 0.00 0.00 1.82
151 152 4.906618 AGACGAGGATGTGTTACCAAAAT 58.093 39.130 0.00 0.00 0.00 1.82
152 153 4.312443 GAGACGAGGATGTGTTACCAAAA 58.688 43.478 0.00 0.00 0.00 2.44
153 154 3.306502 GGAGACGAGGATGTGTTACCAAA 60.307 47.826 0.00 0.00 0.00 3.28
154 155 2.232941 GGAGACGAGGATGTGTTACCAA 59.767 50.000 0.00 0.00 0.00 3.67
155 156 1.822990 GGAGACGAGGATGTGTTACCA 59.177 52.381 0.00 0.00 0.00 3.25
156 157 1.822990 TGGAGACGAGGATGTGTTACC 59.177 52.381 0.00 0.00 0.00 2.85
157 158 2.416972 GGTGGAGACGAGGATGTGTTAC 60.417 54.545 0.00 0.00 0.00 2.50
158 159 1.822990 GGTGGAGACGAGGATGTGTTA 59.177 52.381 0.00 0.00 0.00 2.41
159 160 0.608640 GGTGGAGACGAGGATGTGTT 59.391 55.000 0.00 0.00 0.00 3.32
160 161 1.595993 CGGTGGAGACGAGGATGTGT 61.596 60.000 0.00 0.00 0.00 3.72
161 162 1.139734 CGGTGGAGACGAGGATGTG 59.860 63.158 0.00 0.00 0.00 3.21
162 163 2.052690 CCGGTGGAGACGAGGATGT 61.053 63.158 0.00 0.00 0.00 3.06
163 164 2.808315 CCGGTGGAGACGAGGATG 59.192 66.667 0.00 0.00 0.00 3.51
164 165 3.148279 GCCGGTGGAGACGAGGAT 61.148 66.667 1.90 0.00 0.00 3.24
165 166 4.361971 AGCCGGTGGAGACGAGGA 62.362 66.667 1.90 0.00 0.00 3.71
166 167 3.827898 GAGCCGGTGGAGACGAGG 61.828 72.222 1.90 0.00 0.00 4.63
167 168 3.827898 GGAGCCGGTGGAGACGAG 61.828 72.222 1.90 0.00 0.00 4.18
168 169 4.671590 TGGAGCCGGTGGAGACGA 62.672 66.667 1.90 0.00 0.00 4.20
169 170 4.436998 GTGGAGCCGGTGGAGACG 62.437 72.222 1.90 0.00 0.00 4.18
170 171 2.113243 AAAGTGGAGCCGGTGGAGAC 62.113 60.000 1.90 0.00 0.00 3.36
171 172 1.415672 AAAAGTGGAGCCGGTGGAGA 61.416 55.000 1.90 0.00 0.00 3.71
172 173 1.073199 AAAAGTGGAGCCGGTGGAG 59.927 57.895 1.90 0.00 0.00 3.86
173 174 1.228124 CAAAAGTGGAGCCGGTGGA 60.228 57.895 1.90 0.00 0.00 4.02
174 175 3.354678 CAAAAGTGGAGCCGGTGG 58.645 61.111 1.90 0.00 0.00 4.61
189 190 8.736244 GCACAAATAAAGGTAAGAGATAACCAA 58.264 33.333 0.00 0.00 38.30 3.67
190 191 7.885922 TGCACAAATAAAGGTAAGAGATAACCA 59.114 33.333 0.00 0.00 38.30 3.67
191 192 8.276252 TGCACAAATAAAGGTAAGAGATAACC 57.724 34.615 0.00 0.00 35.91 2.85
192 193 9.774742 CTTGCACAAATAAAGGTAAGAGATAAC 57.225 33.333 0.00 0.00 0.00 1.89
193 194 8.458843 GCTTGCACAAATAAAGGTAAGAGATAA 58.541 33.333 0.00 0.00 0.00 1.75
194 195 7.829211 AGCTTGCACAAATAAAGGTAAGAGATA 59.171 33.333 0.00 0.00 30.28 1.98
195 196 6.660949 AGCTTGCACAAATAAAGGTAAGAGAT 59.339 34.615 0.00 0.00 30.28 2.75
196 197 6.003950 AGCTTGCACAAATAAAGGTAAGAGA 58.996 36.000 0.00 0.00 30.28 3.10
197 198 6.259550 AGCTTGCACAAATAAAGGTAAGAG 57.740 37.500 0.00 0.00 30.28 2.85
198 199 6.648879 AAGCTTGCACAAATAAAGGTAAGA 57.351 33.333 0.00 0.00 31.74 2.10
202 203 8.531146 ACAATATAAGCTTGCACAAATAAAGGT 58.469 29.630 9.86 0.00 33.28 3.50
203 204 8.931385 ACAATATAAGCTTGCACAAATAAAGG 57.069 30.769 9.86 0.00 0.00 3.11
228 229 5.476599 ACACAAGCAAGCAAGGTATGAAATA 59.523 36.000 0.00 0.00 0.00 1.40
229 230 4.281688 ACACAAGCAAGCAAGGTATGAAAT 59.718 37.500 0.00 0.00 0.00 2.17
230 231 3.636300 ACACAAGCAAGCAAGGTATGAAA 59.364 39.130 0.00 0.00 0.00 2.69
231 232 3.004629 CACACAAGCAAGCAAGGTATGAA 59.995 43.478 0.00 0.00 0.00 2.57
232 233 2.553602 CACACAAGCAAGCAAGGTATGA 59.446 45.455 0.00 0.00 0.00 2.15
233 234 2.294233 ACACACAAGCAAGCAAGGTATG 59.706 45.455 0.00 0.00 0.00 2.39
234 235 2.586425 ACACACAAGCAAGCAAGGTAT 58.414 42.857 0.00 0.00 0.00 2.73
235 236 2.051334 ACACACAAGCAAGCAAGGTA 57.949 45.000 0.00 0.00 0.00 3.08
236 237 1.185315 AACACACAAGCAAGCAAGGT 58.815 45.000 0.00 0.00 0.00 3.50
237 238 1.928503 CAAACACACAAGCAAGCAAGG 59.071 47.619 0.00 0.00 0.00 3.61
238 239 2.609350 ACAAACACACAAGCAAGCAAG 58.391 42.857 0.00 0.00 0.00 4.01
239 240 2.735663 CAACAAACACACAAGCAAGCAA 59.264 40.909 0.00 0.00 0.00 3.91
240 241 2.288702 ACAACAAACACACAAGCAAGCA 60.289 40.909 0.00 0.00 0.00 3.91
241 242 2.336667 ACAACAAACACACAAGCAAGC 58.663 42.857 0.00 0.00 0.00 4.01
242 243 3.740321 ACAACAACAAACACACAAGCAAG 59.260 39.130 0.00 0.00 0.00 4.01
243 244 3.722147 ACAACAACAAACACACAAGCAA 58.278 36.364 0.00 0.00 0.00 3.91
244 245 3.377346 ACAACAACAAACACACAAGCA 57.623 38.095 0.00 0.00 0.00 3.91
245 246 3.664014 GCAACAACAACAAACACACAAGC 60.664 43.478 0.00 0.00 0.00 4.01
246 247 3.492383 TGCAACAACAACAAACACACAAG 59.508 39.130 0.00 0.00 0.00 3.16
247 248 3.457234 TGCAACAACAACAAACACACAA 58.543 36.364 0.00 0.00 0.00 3.33
248 249 3.097877 TGCAACAACAACAAACACACA 57.902 38.095 0.00 0.00 0.00 3.72
249 250 3.677121 TGATGCAACAACAACAAACACAC 59.323 39.130 0.00 0.00 0.00 3.82
250 251 3.917988 TGATGCAACAACAACAAACACA 58.082 36.364 0.00 0.00 0.00 3.72
251 252 6.768029 ATATGATGCAACAACAACAAACAC 57.232 33.333 0.00 0.00 0.00 3.32
252 253 7.089538 CCTATATGATGCAACAACAACAAACA 58.910 34.615 0.00 0.00 0.00 2.83
253 254 7.090173 ACCTATATGATGCAACAACAACAAAC 58.910 34.615 0.00 0.00 0.00 2.93
254 255 7.225784 ACCTATATGATGCAACAACAACAAA 57.774 32.000 0.00 0.00 0.00 2.83
255 256 6.832520 ACCTATATGATGCAACAACAACAA 57.167 33.333 0.00 0.00 0.00 2.83
256 257 6.619744 CAACCTATATGATGCAACAACAACA 58.380 36.000 0.00 0.00 0.00 3.33
257 258 5.516339 GCAACCTATATGATGCAACAACAAC 59.484 40.000 0.00 0.00 38.63 3.32
258 259 5.418524 AGCAACCTATATGATGCAACAACAA 59.581 36.000 11.71 0.00 41.18 2.83
259 260 4.949238 AGCAACCTATATGATGCAACAACA 59.051 37.500 11.71 0.00 41.18 3.33
260 261 5.066375 TGAGCAACCTATATGATGCAACAAC 59.934 40.000 11.71 0.00 41.18 3.32
261 262 5.066375 GTGAGCAACCTATATGATGCAACAA 59.934 40.000 11.71 0.00 41.18 2.83
262 263 4.576053 GTGAGCAACCTATATGATGCAACA 59.424 41.667 11.71 0.00 41.18 3.33
263 264 4.023707 GGTGAGCAACCTATATGATGCAAC 60.024 45.833 11.71 9.22 46.55 4.17
264 265 4.136796 GGTGAGCAACCTATATGATGCAA 58.863 43.478 11.71 0.00 46.55 4.08
265 266 3.743521 GGTGAGCAACCTATATGATGCA 58.256 45.455 11.71 0.00 46.55 3.96
277 278 4.446371 AGATATGCAACTAGGTGAGCAAC 58.554 43.478 13.29 0.00 40.76 4.17
278 279 4.760530 AGATATGCAACTAGGTGAGCAA 57.239 40.909 13.29 0.00 40.76 3.91
279 280 5.010112 GTCTAGATATGCAACTAGGTGAGCA 59.990 44.000 13.29 3.07 41.73 4.26
280 281 5.010112 TGTCTAGATATGCAACTAGGTGAGC 59.990 44.000 13.29 0.00 37.34 4.26
281 282 6.641169 TGTCTAGATATGCAACTAGGTGAG 57.359 41.667 13.29 0.00 37.34 3.51
282 283 6.183360 GGTTGTCTAGATATGCAACTAGGTGA 60.183 42.308 13.29 0.00 40.49 4.02
283 284 5.986135 GGTTGTCTAGATATGCAACTAGGTG 59.014 44.000 18.23 2.45 40.49 4.00
284 285 5.900123 AGGTTGTCTAGATATGCAACTAGGT 59.100 40.000 18.23 0.00 40.49 3.08
285 286 6.412362 AGGTTGTCTAGATATGCAACTAGG 57.588 41.667 18.23 7.22 40.49 3.02
286 287 9.988815 AAATAGGTTGTCTAGATATGCAACTAG 57.011 33.333 18.23 15.26 40.49 2.57
288 289 9.113838 CAAAATAGGTTGTCTAGATATGCAACT 57.886 33.333 18.23 10.35 40.49 3.16
289 290 9.109393 TCAAAATAGGTTGTCTAGATATGCAAC 57.891 33.333 13.07 13.07 40.08 4.17
290 291 9.851686 ATCAAAATAGGTTGTCTAGATATGCAA 57.148 29.630 0.00 0.00 0.00 4.08
291 292 9.276590 CATCAAAATAGGTTGTCTAGATATGCA 57.723 33.333 0.00 0.00 0.00 3.96
292 293 8.233190 GCATCAAAATAGGTTGTCTAGATATGC 58.767 37.037 0.00 0.00 0.00 3.14
293 294 9.499479 AGCATCAAAATAGGTTGTCTAGATATG 57.501 33.333 0.00 0.00 0.00 1.78
296 297 9.553064 CTTAGCATCAAAATAGGTTGTCTAGAT 57.447 33.333 0.00 0.00 0.00 1.98
297 298 8.540388 ACTTAGCATCAAAATAGGTTGTCTAGA 58.460 33.333 0.00 0.00 0.00 2.43
298 299 8.723942 ACTTAGCATCAAAATAGGTTGTCTAG 57.276 34.615 0.00 0.00 0.00 2.43
299 300 9.515226 AAACTTAGCATCAAAATAGGTTGTCTA 57.485 29.630 0.00 0.00 0.00 2.59
300 301 8.409358 AAACTTAGCATCAAAATAGGTTGTCT 57.591 30.769 0.00 0.00 0.00 3.41
302 303 9.908152 GTTAAACTTAGCATCAAAATAGGTTGT 57.092 29.630 0.00 0.00 0.00 3.32
311 312 9.897744 CTTGATCAAGTTAAACTTAGCATCAAA 57.102 29.630 24.65 0.00 37.41 2.69
312 313 9.283768 TCTTGATCAAGTTAAACTTAGCATCAA 57.716 29.630 29.80 6.42 36.03 2.57
313 314 8.846943 TCTTGATCAAGTTAAACTTAGCATCA 57.153 30.769 29.80 6.77 36.03 3.07
316 317 9.950680 CTTTTCTTGATCAAGTTAAACTTAGCA 57.049 29.630 29.80 10.79 36.03 3.49
317 318 8.906693 GCTTTTCTTGATCAAGTTAAACTTAGC 58.093 33.333 29.80 23.34 36.03 3.09
327 328 9.822185 ACAATTTTTAGCTTTTCTTGATCAAGT 57.178 25.926 29.80 15.41 39.38 3.16
334 335 9.636965 GCAACTAACAATTTTTAGCTTTTCTTG 57.363 29.630 10.61 8.01 33.02 3.02
335 336 8.826710 GGCAACTAACAATTTTTAGCTTTTCTT 58.173 29.630 10.61 0.00 33.02 2.52
336 337 8.365399 GGCAACTAACAATTTTTAGCTTTTCT 57.635 30.769 10.61 0.00 33.02 2.52
369 370 7.404396 AGGATTGATATAATTGACTAGAGGGGG 59.596 40.741 0.00 0.00 0.00 5.40
370 371 8.386012 AGGATTGATATAATTGACTAGAGGGG 57.614 38.462 0.00 0.00 0.00 4.79
394 395 3.791973 ACAGTAGATCGCCTCTGAAAG 57.208 47.619 13.32 0.00 35.28 2.62
395 396 3.764434 AGAACAGTAGATCGCCTCTGAAA 59.236 43.478 13.32 0.00 35.28 2.69
396 397 3.357203 AGAACAGTAGATCGCCTCTGAA 58.643 45.455 13.32 0.00 35.28 3.02
397 398 3.006112 AGAACAGTAGATCGCCTCTGA 57.994 47.619 13.32 0.00 35.28 3.27
398 399 3.119316 ACAAGAACAGTAGATCGCCTCTG 60.119 47.826 7.54 7.54 35.28 3.35
399 400 3.093057 ACAAGAACAGTAGATCGCCTCT 58.907 45.455 0.00 0.00 38.06 3.69
400 401 3.182967 CACAAGAACAGTAGATCGCCTC 58.817 50.000 0.00 0.00 0.00 4.70
509 1524 1.741770 CGCCACCTGGTTAGACTGC 60.742 63.158 0.00 0.00 37.57 4.40
532 1547 1.229529 GACAGTTGGGGAGAGGGGA 60.230 63.158 0.00 0.00 0.00 4.81
618 1659 3.114647 CTTCTCCCTCGTCGCTCCG 62.115 68.421 0.00 0.00 0.00 4.63
743 1785 4.779993 CCCTCTTTTAGTAGGGCTTCAT 57.220 45.455 0.00 0.00 45.91 2.57
850 1893 2.561569 CAGTTCACAGAAAACCGGTCT 58.438 47.619 8.04 0.00 0.00 3.85
929 1973 1.507141 CTCGTGGCGCAGGTTTCTTT 61.507 55.000 10.83 0.00 0.00 2.52
930 1974 1.961277 CTCGTGGCGCAGGTTTCTT 60.961 57.895 10.83 0.00 0.00 2.52
931 1975 2.357517 CTCGTGGCGCAGGTTTCT 60.358 61.111 10.83 0.00 0.00 2.52
1518 2747 2.375345 GGATGAAGGGGAGGGCGAA 61.375 63.158 0.00 0.00 0.00 4.70
1589 2818 2.530465 GAACTCGGAGAAGTCGCGCT 62.530 60.000 12.86 0.00 34.09 5.92
1606 2835 1.535444 TCCTGAACCTCCCGCTGAA 60.535 57.895 0.00 0.00 0.00 3.02
1744 2973 2.515071 GCCTCGCATCATCCTCCCT 61.515 63.158 0.00 0.00 0.00 4.20
1777 3006 1.068921 GCCTCGCCTCTTCCTCATC 59.931 63.158 0.00 0.00 0.00 2.92
1818 3047 4.530875 CCATCTTCTCCAAGTAATGCCTT 58.469 43.478 0.00 0.00 0.00 4.35
1895 3124 4.451241 CATCCGCCTGATGTCTGG 57.549 61.111 1.90 1.90 44.91 3.86
1922 3151 1.000359 TCCTCCCACTCATCGCTCA 60.000 57.895 0.00 0.00 0.00 4.26
1926 3155 0.250234 TTTGCTCCTCCCACTCATCG 59.750 55.000 0.00 0.00 0.00 3.84
1948 3177 1.592669 CATCCGCCCGATGTCTGAC 60.593 63.158 0.00 0.00 43.07 3.51
2317 3552 5.304101 TGCTACAGGGTTTCATGAATTTTGT 59.696 36.000 9.40 13.23 0.00 2.83
2459 3699 6.017109 TGGTCAGACTTTGTGATAGAAAAAGC 60.017 38.462 0.00 0.00 34.88 3.51
2472 3712 4.276678 ACACATTCACATGGTCAGACTTTG 59.723 41.667 0.00 1.36 34.27 2.77
2473 3713 4.464008 ACACATTCACATGGTCAGACTTT 58.536 39.130 0.00 0.00 34.27 2.66
2474 3714 4.090761 ACACATTCACATGGTCAGACTT 57.909 40.909 0.00 0.00 34.27 3.01
2475 3715 3.777106 ACACATTCACATGGTCAGACT 57.223 42.857 0.00 0.00 34.27 3.24
2497 3737 8.797266 AAAAAGAGTATTGAAAAGGTTAAGCG 57.203 30.769 0.00 0.00 0.00 4.68
2586 3826 3.273434 CAAAGCAGCTAATGTAGGAGCA 58.727 45.455 0.00 0.00 41.36 4.26
2706 3946 1.502690 TTACCTGTGGTGTGGACAGT 58.497 50.000 0.00 0.00 39.43 3.55
2843 4092 2.669364 ACAGCAAGTACCGTTTAGTCG 58.331 47.619 0.00 0.00 0.00 4.18
2846 4095 4.056050 AGTCAACAGCAAGTACCGTTTAG 58.944 43.478 0.00 0.00 0.00 1.85
2898 4147 7.227049 TGTGACCAAAAGAAGAAAGAAAGTT 57.773 32.000 0.00 0.00 0.00 2.66
2973 4222 5.147162 GCAAACTTATGTTATAGCATCGGC 58.853 41.667 5.23 0.00 36.31 5.54
3017 4266 2.223377 GTGGCTTGTTGAGAACTTACCG 59.777 50.000 0.00 0.00 0.00 4.02
3021 4270 2.427095 GGTTGTGGCTTGTTGAGAACTT 59.573 45.455 0.00 0.00 0.00 2.66
3133 4387 6.714356 TGTCTGATTGGTTATCATGTTTGACA 59.286 34.615 0.00 0.00 42.26 3.58
3264 4518 0.320050 TCAACAGTGCCATAGCGTCA 59.680 50.000 0.00 0.00 44.31 4.35
3482 4738 6.073711 GGCTTTGACCTTTATCTATCTTACGC 60.074 42.308 0.00 0.00 0.00 4.42
4066 5335 1.241165 TGAATGCTGACAGTTGCTGG 58.759 50.000 3.99 0.00 35.51 4.85
4126 5395 5.714047 TGTTGTAGATGCTCTCAGTTGTAG 58.286 41.667 0.00 0.00 0.00 2.74
4769 6038 6.334989 AGCACACTATTAATGCAAGTACGTA 58.665 36.000 0.00 0.00 41.97 3.57
4999 6270 3.132646 ACATGCCATAAATGAAATGCGGT 59.867 39.130 0.00 0.00 0.00 5.68
5185 6457 2.284190 GCTTAGCTTAACTGCTGGGAG 58.716 52.381 0.00 0.00 43.87 4.30
5269 6541 1.800586 CGTAACTGCTCTGTTGCATGT 59.199 47.619 0.00 0.00 42.48 3.21
5350 6622 3.499737 CGCACAGATGGGAACGCC 61.500 66.667 0.00 0.00 41.24 5.68
5384 6656 5.044179 TCTCAAAATCTGTTATGGGGGTGAT 60.044 40.000 0.00 0.00 0.00 3.06
5430 6702 2.158957 TCCACCACTGTGACTTCAGTTC 60.159 50.000 9.86 0.00 44.92 3.01
5441 6713 2.290641 TGACTGTTTTGTCCACCACTGT 60.291 45.455 0.00 0.00 36.21 3.55
5473 6745 0.339859 TGCTACCATCCTCCCTCAGT 59.660 55.000 0.00 0.00 0.00 3.41
5658 6930 2.677875 GGCTGAAGTTGGCCTGGG 60.678 66.667 3.32 0.00 44.48 4.45
5706 6978 4.455606 ACTTCCCTTCTTCTGTTGACAAG 58.544 43.478 0.00 0.00 0.00 3.16
5708 6980 4.199310 CAACTTCCCTTCTTCTGTTGACA 58.801 43.478 0.00 0.00 37.53 3.58
5709 6981 4.200092 ACAACTTCCCTTCTTCTGTTGAC 58.800 43.478 10.06 0.00 38.36 3.18
5759 7032 5.514274 TTCCAGTTTTCAGGTTGATGTTC 57.486 39.130 0.00 0.00 0.00 3.18
5763 7036 3.317993 CGGTTTCCAGTTTTCAGGTTGAT 59.682 43.478 0.00 0.00 0.00 2.57
5893 7170 1.302949 CACCCCCACCCACTGTATG 59.697 63.158 0.00 0.00 0.00 2.39
6038 7321 4.039124 GCCATTTTGTTCTCTCTTTTCCCA 59.961 41.667 0.00 0.00 0.00 4.37
6062 7345 3.875134 ACCATTTCGTTTGTTCTCTCGTT 59.125 39.130 0.00 0.00 0.00 3.85
6077 7361 8.190122 TGCAAATATAGTTGTCATCACCATTTC 58.810 33.333 13.91 0.00 0.00 2.17
6095 7379 7.040478 AGTGTAGTGTGTTGTCATTGCAAATAT 60.040 33.333 1.71 0.00 0.00 1.28
6154 7444 4.437930 GCTGTGCTTTGTTGGATATGAGTC 60.438 45.833 0.00 0.00 0.00 3.36
6155 7445 3.441572 GCTGTGCTTTGTTGGATATGAGT 59.558 43.478 0.00 0.00 0.00 3.41
6156 7446 3.486375 CGCTGTGCTTTGTTGGATATGAG 60.486 47.826 0.00 0.00 0.00 2.90
6178 7480 2.855963 CAGTTCATTCGCCATTTGCATC 59.144 45.455 0.00 0.00 41.33 3.91
6189 7491 0.107703 TAGCCAGGCCAGTTCATTCG 60.108 55.000 8.22 0.00 0.00 3.34
6223 7525 2.912956 ACTTTGGCCTCATCAGGTCTTA 59.087 45.455 3.32 0.00 45.93 2.10
6249 7551 1.377856 GCACCTTGGGAAGCTCTCC 60.378 63.158 6.43 6.43 44.54 3.71
6375 7677 2.951745 GGCATCTCGCTCGACGTG 60.952 66.667 0.00 0.00 44.19 4.49
6609 7911 2.182842 GCCATGGCGTCATGTCCTC 61.183 63.158 27.02 10.52 46.96 3.71
6853 8178 2.138831 TTTGCATTGCCCTGCCACA 61.139 52.632 6.12 0.00 41.58 4.17
6875 8200 1.160329 AATCTCTTATGTGGCCGCGC 61.160 55.000 12.58 0.00 0.00 6.86
6876 8201 0.861837 GAATCTCTTATGTGGCCGCG 59.138 55.000 12.58 0.00 0.00 6.46
6877 8202 0.861837 CGAATCTCTTATGTGGCCGC 59.138 55.000 10.11 10.11 0.00 6.53
6878 8203 1.860950 CACGAATCTCTTATGTGGCCG 59.139 52.381 0.00 0.00 0.00 6.13
6882 8207 3.261580 TGCACCACGAATCTCTTATGTG 58.738 45.455 0.00 0.00 0.00 3.21
6883 8208 3.055819 ACTGCACCACGAATCTCTTATGT 60.056 43.478 0.00 0.00 0.00 2.29
6884 8209 3.308053 CACTGCACCACGAATCTCTTATG 59.692 47.826 0.00 0.00 0.00 1.90
6885 8210 3.525537 CACTGCACCACGAATCTCTTAT 58.474 45.455 0.00 0.00 0.00 1.73
6886 8211 2.930887 GCACTGCACCACGAATCTCTTA 60.931 50.000 0.00 0.00 0.00 2.10
6887 8212 1.800805 CACTGCACCACGAATCTCTT 58.199 50.000 0.00 0.00 0.00 2.85
6888 8213 0.671781 GCACTGCACCACGAATCTCT 60.672 55.000 0.00 0.00 0.00 3.10
6889 8214 0.950555 TGCACTGCACCACGAATCTC 60.951 55.000 0.00 0.00 31.71 2.75
6893 8218 1.525765 ACATGCACTGCACCACGAA 60.526 52.632 5.67 0.00 43.04 3.85
6909 8234 2.267642 GCCATCCAGGTACGCACA 59.732 61.111 0.00 0.00 40.61 4.57
6911 8236 3.071837 TCGCCATCCAGGTACGCA 61.072 61.111 0.00 0.00 40.61 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.