Multiple sequence alignment - TraesCS4D01G059300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G059300 chr4D 100.000 4493 0 0 1 4493 35162772 35167264 0.000000e+00 8298.0
1 TraesCS4D01G059300 chr4D 74.919 307 64 10 2895 3196 404111587 404111289 1.310000e-25 128.0
2 TraesCS4D01G059300 chr4A 93.010 4077 152 55 489 4493 567482618 567478603 0.000000e+00 5827.0
3 TraesCS4D01G059300 chr4A 88.852 305 18 6 1 292 567483282 567482981 1.190000e-95 361.0
4 TraesCS4D01G059300 chr4A 74.013 304 66 10 2895 3193 61616209 61615914 1.320000e-20 111.0
5 TraesCS4D01G059300 chr4A 90.789 76 3 2 4133 4204 567478891 567478816 1.030000e-16 99.0
6 TraesCS4D01G059300 chr4B 92.075 4025 180 64 560 4493 50838813 50834837 0.000000e+00 5537.0
7 TraesCS4D01G059300 chr4B 75.325 308 63 10 2895 3197 500869014 500868715 7.840000e-28 135.0
8 TraesCS4D01G059300 chr3B 77.303 304 54 12 2886 3183 673170524 673170230 1.000000e-36 165.0
9 TraesCS4D01G059300 chrUn 78.414 227 42 6 2954 3178 122077474 122077695 1.690000e-29 141.0
10 TraesCS4D01G059300 chr5D 78.509 228 40 8 2954 3178 1802004 1802225 1.690000e-29 141.0
11 TraesCS4D01G059300 chr5D 72.574 237 54 10 2955 3187 351807148 351806919 2.900000e-07 67.6
12 TraesCS4D01G059300 chr3A 75.658 304 59 12 2886 3183 647613453 647613747 2.180000e-28 137.0
13 TraesCS4D01G059300 chr5B 78.027 223 42 6 2954 3174 656497 656280 2.820000e-27 134.0
14 TraesCS4D01G059300 chr5B 74.613 323 61 17 2901 3211 682819620 682819933 6.100000e-24 122.0
15 TraesCS4D01G059300 chr5B 72.973 222 49 10 2955 3172 417153484 417153698 2.900000e-07 67.6
16 TraesCS4D01G059300 chr7D 73.958 288 60 11 2884 3165 566015812 566016090 7.950000e-18 102.0
17 TraesCS4D01G059300 chr5A 72.242 281 65 12 2897 3172 454271598 454271870 1.730000e-09 75.0
18 TraesCS4D01G059300 chr1B 94.444 36 0 2 2718 2752 626687946 626687980 2.000000e-03 54.7
19 TraesCS4D01G059300 chr1A 94.444 36 0 2 2718 2752 549712110 549712144 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G059300 chr4D 35162772 35167264 4492 False 8298 8298 100.0000 1 4493 1 chr4D.!!$F1 4492
1 TraesCS4D01G059300 chr4A 567478603 567482618 4015 True 2963 5827 91.8995 489 4493 2 chr4A.!!$R3 4004
2 TraesCS4D01G059300 chr4B 50834837 50838813 3976 True 5537 5537 92.0750 560 4493 1 chr4B.!!$R1 3933

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
406 407 0.041535 TTGGTAAGCTAGACCGGGGA 59.958 55.000 6.32 0.0 40.09 4.81 F
1260 1312 0.038067 TATGGTACGCGCACAACACT 60.038 50.000 12.27 0.0 0.00 3.55 F
2047 2126 1.071471 GATCCTGGCCCGTACATGG 59.929 63.158 0.00 0.0 0.00 3.66 F
3438 3520 1.220206 CAAGATGCTCGAGGGCACT 59.780 57.895 15.58 0.0 45.36 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2071 2150 0.317269 CACTTTTGCTCGCACACCTG 60.317 55.000 0.0 0.0 0.00 4.00 R
2642 2721 1.522092 GCGATGATGGTCACCTCCA 59.478 57.895 0.0 0.0 42.01 3.86 R
3465 3547 0.036010 CCTGGACGCAGAAGATGGTT 60.036 55.000 0.0 0.0 0.00 3.67 R
4294 4445 3.513515 GTGGGCTTTTAATCATTGGACCA 59.486 43.478 0.0 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.753674 ACACGATTCCCCATAAATAATCATTAT 57.246 29.630 0.00 0.00 0.00 1.28
48 49 9.720769 ATTATACTTAAGACCGTATTCATTGGG 57.279 33.333 10.09 0.00 0.00 4.12
49 50 5.431179 ACTTAAGACCGTATTCATTGGGT 57.569 39.130 10.09 0.00 34.94 4.51
50 51 5.183228 ACTTAAGACCGTATTCATTGGGTG 58.817 41.667 10.09 0.00 31.66 4.61
51 52 3.713826 AAGACCGTATTCATTGGGTGT 57.286 42.857 0.00 0.00 31.66 4.16
52 53 4.829872 AAGACCGTATTCATTGGGTGTA 57.170 40.909 0.00 0.00 31.66 2.90
53 54 5.367945 AAGACCGTATTCATTGGGTGTAT 57.632 39.130 0.00 0.00 31.66 2.29
54 55 4.703897 AGACCGTATTCATTGGGTGTATG 58.296 43.478 0.00 0.00 31.66 2.39
55 56 4.163458 AGACCGTATTCATTGGGTGTATGT 59.837 41.667 0.00 0.00 31.66 2.29
56 57 5.364446 AGACCGTATTCATTGGGTGTATGTA 59.636 40.000 0.00 0.00 31.66 2.29
57 58 6.042781 AGACCGTATTCATTGGGTGTATGTAT 59.957 38.462 0.00 0.00 31.66 2.29
58 59 6.228258 ACCGTATTCATTGGGTGTATGTATC 58.772 40.000 0.00 0.00 0.00 2.24
59 60 6.183361 ACCGTATTCATTGGGTGTATGTATCA 60.183 38.462 0.00 0.00 0.00 2.15
60 61 6.878923 CCGTATTCATTGGGTGTATGTATCAT 59.121 38.462 0.00 0.00 0.00 2.45
61 62 7.064609 CCGTATTCATTGGGTGTATGTATCATC 59.935 40.741 0.00 0.00 0.00 2.92
62 63 7.819415 CGTATTCATTGGGTGTATGTATCATCT 59.181 37.037 0.00 0.00 0.00 2.90
63 64 9.507329 GTATTCATTGGGTGTATGTATCATCTT 57.493 33.333 0.00 0.00 0.00 2.40
64 65 8.627208 ATTCATTGGGTGTATGTATCATCTTC 57.373 34.615 0.00 0.00 0.00 2.87
65 66 7.135591 TCATTGGGTGTATGTATCATCTTCA 57.864 36.000 0.00 0.00 0.00 3.02
66 67 7.572814 TCATTGGGTGTATGTATCATCTTCAA 58.427 34.615 0.00 0.00 0.00 2.69
67 68 8.052141 TCATTGGGTGTATGTATCATCTTCAAA 58.948 33.333 0.00 0.00 0.00 2.69
68 69 8.853126 CATTGGGTGTATGTATCATCTTCAAAT 58.147 33.333 0.00 0.00 0.00 2.32
95 96 7.418840 TTTTTATGTTAAGGTGCAGCATTTG 57.581 32.000 19.63 0.00 0.00 2.32
96 97 5.973899 TTATGTTAAGGTGCAGCATTTGA 57.026 34.783 19.63 0.00 0.00 2.69
97 98 3.921119 TGTTAAGGTGCAGCATTTGAG 57.079 42.857 19.63 0.00 0.00 3.02
98 99 3.221771 TGTTAAGGTGCAGCATTTGAGT 58.778 40.909 19.63 0.00 0.00 3.41
99 100 3.004629 TGTTAAGGTGCAGCATTTGAGTG 59.995 43.478 19.63 0.00 0.00 3.51
100 101 0.316204 AAGGTGCAGCATTTGAGTGC 59.684 50.000 19.63 0.00 45.38 4.40
108 109 2.056094 GCATTTGAGTGCACTCCAAC 57.944 50.000 37.23 21.03 44.43 3.77
109 110 1.610522 GCATTTGAGTGCACTCCAACT 59.389 47.619 37.23 23.56 44.43 3.16
110 111 2.813754 GCATTTGAGTGCACTCCAACTA 59.186 45.455 37.23 20.24 44.43 2.24
111 112 3.365364 GCATTTGAGTGCACTCCAACTAC 60.365 47.826 37.23 23.00 44.43 2.73
112 113 3.838244 TTTGAGTGCACTCCAACTACT 57.162 42.857 37.23 6.78 42.20 2.57
113 114 4.948341 TTTGAGTGCACTCCAACTACTA 57.052 40.909 37.23 18.14 42.20 1.82
114 115 4.948341 TTGAGTGCACTCCAACTACTAA 57.052 40.909 37.23 22.38 42.20 2.24
115 116 5.483685 TTGAGTGCACTCCAACTACTAAT 57.516 39.130 37.23 5.20 42.20 1.73
116 117 4.820897 TGAGTGCACTCCAACTACTAATG 58.179 43.478 37.23 0.00 42.20 1.90
117 118 3.600388 AGTGCACTCCAACTACTAATGC 58.400 45.455 15.25 0.00 0.00 3.56
118 119 3.261897 AGTGCACTCCAACTACTAATGCT 59.738 43.478 15.25 0.00 32.81 3.79
119 120 4.466370 AGTGCACTCCAACTACTAATGCTA 59.534 41.667 15.25 0.00 32.81 3.49
120 121 5.046591 AGTGCACTCCAACTACTAATGCTAA 60.047 40.000 15.25 0.00 32.81 3.09
121 122 5.817816 GTGCACTCCAACTACTAATGCTAAT 59.182 40.000 10.32 0.00 32.81 1.73
122 123 6.018669 GTGCACTCCAACTACTAATGCTAATC 60.019 42.308 10.32 0.00 32.81 1.75
123 124 6.049149 GCACTCCAACTACTAATGCTAATCA 58.951 40.000 0.00 0.00 0.00 2.57
124 125 6.538742 GCACTCCAACTACTAATGCTAATCAA 59.461 38.462 0.00 0.00 0.00 2.57
125 126 7.065803 GCACTCCAACTACTAATGCTAATCAAA 59.934 37.037 0.00 0.00 0.00 2.69
126 127 8.946085 CACTCCAACTACTAATGCTAATCAAAA 58.054 33.333 0.00 0.00 0.00 2.44
127 128 9.167311 ACTCCAACTACTAATGCTAATCAAAAG 57.833 33.333 0.00 0.00 0.00 2.27
128 129 8.506168 TCCAACTACTAATGCTAATCAAAAGG 57.494 34.615 0.00 0.00 0.00 3.11
129 130 7.556275 TCCAACTACTAATGCTAATCAAAAGGG 59.444 37.037 0.00 0.00 0.00 3.95
130 131 7.339466 CCAACTACTAATGCTAATCAAAAGGGT 59.661 37.037 0.00 0.00 0.00 4.34
131 132 8.739972 CAACTACTAATGCTAATCAAAAGGGTT 58.260 33.333 0.00 0.00 0.00 4.11
132 133 8.281212 ACTACTAATGCTAATCAAAAGGGTTG 57.719 34.615 0.00 0.00 0.00 3.77
133 134 7.888546 ACTACTAATGCTAATCAAAAGGGTTGT 59.111 33.333 0.00 0.00 0.00 3.32
134 135 9.391006 CTACTAATGCTAATCAAAAGGGTTGTA 57.609 33.333 0.00 0.00 0.00 2.41
135 136 8.823220 ACTAATGCTAATCAAAAGGGTTGTAT 57.177 30.769 0.00 0.00 0.00 2.29
136 137 9.255029 ACTAATGCTAATCAAAAGGGTTGTATT 57.745 29.630 0.00 0.00 0.00 1.89
138 139 8.776376 AATGCTAATCAAAAGGGTTGTATTTG 57.224 30.769 0.00 0.00 35.81 2.32
139 140 6.696411 TGCTAATCAAAAGGGTTGTATTTGG 58.304 36.000 0.00 0.00 35.34 3.28
140 141 6.495181 TGCTAATCAAAAGGGTTGTATTTGGA 59.505 34.615 0.00 0.00 35.34 3.53
141 142 6.811665 GCTAATCAAAAGGGTTGTATTTGGAC 59.188 38.462 0.00 0.00 35.34 4.02
142 143 6.739331 AATCAAAAGGGTTGTATTTGGACA 57.261 33.333 0.00 0.00 35.34 4.02
143 144 6.933514 ATCAAAAGGGTTGTATTTGGACAT 57.066 33.333 0.00 0.00 35.34 3.06
144 145 6.739331 TCAAAAGGGTTGTATTTGGACATT 57.261 33.333 0.00 0.00 35.34 2.71
145 146 7.130681 TCAAAAGGGTTGTATTTGGACATTT 57.869 32.000 0.00 0.00 35.34 2.32
146 147 6.989169 TCAAAAGGGTTGTATTTGGACATTTG 59.011 34.615 0.00 0.00 35.34 2.32
147 148 6.739331 AAAGGGTTGTATTTGGACATTTGA 57.261 33.333 0.00 0.00 0.00 2.69
148 149 5.722021 AGGGTTGTATTTGGACATTTGAC 57.278 39.130 0.00 0.00 0.00 3.18
149 150 5.393866 AGGGTTGTATTTGGACATTTGACT 58.606 37.500 0.00 0.00 0.00 3.41
150 151 5.838521 AGGGTTGTATTTGGACATTTGACTT 59.161 36.000 0.00 0.00 0.00 3.01
151 152 5.925969 GGGTTGTATTTGGACATTTGACTTG 59.074 40.000 0.00 0.00 0.00 3.16
152 153 6.239176 GGGTTGTATTTGGACATTTGACTTGA 60.239 38.462 0.00 0.00 0.00 3.02
153 154 7.378181 GGTTGTATTTGGACATTTGACTTGAT 58.622 34.615 0.00 0.00 0.00 2.57
154 155 7.542130 GGTTGTATTTGGACATTTGACTTGATC 59.458 37.037 0.00 0.00 0.00 2.92
155 156 7.757941 TGTATTTGGACATTTGACTTGATCA 57.242 32.000 0.00 0.00 34.65 2.92
156 157 8.352137 TGTATTTGGACATTTGACTTGATCAT 57.648 30.769 0.00 0.00 37.11 2.45
157 158 8.461222 TGTATTTGGACATTTGACTTGATCATC 58.539 33.333 0.00 0.00 37.11 2.92
158 159 5.902613 TTGGACATTTGACTTGATCATCC 57.097 39.130 0.00 0.00 37.11 3.51
159 160 4.920999 TGGACATTTGACTTGATCATCCA 58.079 39.130 5.06 5.06 39.46 3.41
160 161 4.701651 TGGACATTTGACTTGATCATCCAC 59.298 41.667 5.06 0.00 37.69 4.02
161 162 4.701651 GGACATTTGACTTGATCATCCACA 59.298 41.667 0.00 0.00 37.11 4.17
162 163 5.359009 GGACATTTGACTTGATCATCCACAT 59.641 40.000 0.00 0.00 37.11 3.21
163 164 6.543465 GGACATTTGACTTGATCATCCACATA 59.457 38.462 0.00 0.00 37.11 2.29
164 165 7.230108 GGACATTTGACTTGATCATCCACATAT 59.770 37.037 0.00 0.00 37.11 1.78
165 166 9.276590 GACATTTGACTTGATCATCCACATATA 57.723 33.333 0.00 0.00 37.11 0.86
166 167 9.803507 ACATTTGACTTGATCATCCACATATAT 57.196 29.630 0.00 0.00 37.11 0.86
168 169 9.803507 ATTTGACTTGATCATCCACATATATGT 57.196 29.630 12.75 12.75 38.26 2.29
169 170 8.837788 TTGACTTGATCATCCACATATATGTC 57.162 34.615 15.60 3.70 36.56 3.06
170 171 7.389232 TGACTTGATCATCCACATATATGTCC 58.611 38.462 15.60 0.98 33.22 4.02
171 172 6.715280 ACTTGATCATCCACATATATGTCCC 58.285 40.000 15.60 1.60 39.39 4.46
172 173 5.698741 TGATCATCCACATATATGTCCCC 57.301 43.478 15.60 2.53 39.39 4.81
173 174 5.353125 TGATCATCCACATATATGTCCCCT 58.647 41.667 15.60 0.00 39.39 4.79
174 175 5.792188 TGATCATCCACATATATGTCCCCTT 59.208 40.000 15.60 0.00 39.39 3.95
175 176 5.762179 TCATCCACATATATGTCCCCTTC 57.238 43.478 15.60 0.00 39.39 3.46
176 177 4.536090 TCATCCACATATATGTCCCCTTCC 59.464 45.833 15.60 0.00 39.39 3.46
177 178 3.948126 TCCACATATATGTCCCCTTCCA 58.052 45.455 15.60 0.00 39.39 3.53
178 179 4.512298 TCCACATATATGTCCCCTTCCAT 58.488 43.478 15.60 0.00 39.39 3.41
179 180 5.670899 TCCACATATATGTCCCCTTCCATA 58.329 41.667 15.60 0.00 39.39 2.74
180 181 6.279405 TCCACATATATGTCCCCTTCCATAT 58.721 40.000 15.60 0.00 39.39 1.78
181 182 6.158520 TCCACATATATGTCCCCTTCCATATG 59.841 42.308 15.60 0.00 39.39 1.78
182 183 6.158520 CCACATATATGTCCCCTTCCATATGA 59.841 42.308 15.60 0.00 39.39 2.15
183 184 7.050377 CACATATATGTCCCCTTCCATATGAC 58.950 42.308 15.60 0.00 39.39 3.06
184 185 6.968248 ACATATATGTCCCCTTCCATATGACT 59.032 38.462 12.75 0.00 35.87 3.41
185 186 7.462328 ACATATATGTCCCCTTCCATATGACTT 59.538 37.037 12.75 0.00 35.87 3.01
186 187 3.931907 TGTCCCCTTCCATATGACTTG 57.068 47.619 3.65 0.00 0.00 3.16
187 188 2.092429 TGTCCCCTTCCATATGACTTGC 60.092 50.000 3.65 0.00 0.00 4.01
188 189 2.173569 GTCCCCTTCCATATGACTTGCT 59.826 50.000 3.65 0.00 0.00 3.91
189 190 2.852449 TCCCCTTCCATATGACTTGCTT 59.148 45.455 3.65 0.00 0.00 3.91
190 191 4.044308 TCCCCTTCCATATGACTTGCTTA 58.956 43.478 3.65 0.00 0.00 3.09
191 192 4.476846 TCCCCTTCCATATGACTTGCTTAA 59.523 41.667 3.65 0.00 0.00 1.85
192 193 5.134339 TCCCCTTCCATATGACTTGCTTAAT 59.866 40.000 3.65 0.00 0.00 1.40
193 194 5.835280 CCCCTTCCATATGACTTGCTTAATT 59.165 40.000 3.65 0.00 0.00 1.40
194 195 7.004086 CCCCTTCCATATGACTTGCTTAATTA 58.996 38.462 3.65 0.00 0.00 1.40
195 196 7.671398 CCCCTTCCATATGACTTGCTTAATTAT 59.329 37.037 3.65 0.00 0.00 1.28
196 197 8.517878 CCCTTCCATATGACTTGCTTAATTATG 58.482 37.037 3.65 0.00 0.00 1.90
197 198 8.517878 CCTTCCATATGACTTGCTTAATTATGG 58.482 37.037 3.65 0.00 34.76 2.74
198 199 9.288576 CTTCCATATGACTTGCTTAATTATGGA 57.711 33.333 3.65 4.98 39.11 3.41
199 200 9.639563 TTCCATATGACTTGCTTAATTATGGAA 57.360 29.630 14.38 14.38 44.45 3.53
200 201 9.639563 TCCATATGACTTGCTTAATTATGGAAA 57.360 29.630 3.65 0.00 38.26 3.13
229 230 8.846943 TTTATCAAACTTCAAGACATAGCTGA 57.153 30.769 0.00 0.00 0.00 4.26
230 231 8.846943 TTATCAAACTTCAAGACATAGCTGAA 57.153 30.769 0.00 0.00 0.00 3.02
231 232 6.545504 TCAAACTTCAAGACATAGCTGAAC 57.454 37.500 0.00 0.00 0.00 3.18
232 233 6.291377 TCAAACTTCAAGACATAGCTGAACT 58.709 36.000 0.00 0.00 0.00 3.01
233 234 7.441836 TCAAACTTCAAGACATAGCTGAACTA 58.558 34.615 0.00 0.00 34.64 2.24
234 235 7.931407 TCAAACTTCAAGACATAGCTGAACTAA 59.069 33.333 0.00 0.00 33.57 2.24
235 236 8.725148 CAAACTTCAAGACATAGCTGAACTAAT 58.275 33.333 0.00 0.00 33.57 1.73
236 237 8.854614 AACTTCAAGACATAGCTGAACTAATT 57.145 30.769 0.00 0.00 33.57 1.40
237 238 8.854614 ACTTCAAGACATAGCTGAACTAATTT 57.145 30.769 0.00 0.00 33.57 1.82
238 239 9.944376 ACTTCAAGACATAGCTGAACTAATTTA 57.056 29.630 0.00 0.00 33.57 1.40
245 246 9.722056 GACATAGCTGAACTAATTTAATTGTGG 57.278 33.333 0.00 0.00 33.57 4.17
246 247 9.243105 ACATAGCTGAACTAATTTAATTGTGGT 57.757 29.630 0.00 0.00 33.57 4.16
249 250 7.602753 AGCTGAACTAATTTAATTGTGGTTCC 58.397 34.615 19.28 11.52 32.28 3.62
250 251 6.526674 GCTGAACTAATTTAATTGTGGTTCCG 59.473 38.462 19.28 16.42 32.28 4.30
251 252 7.513371 TGAACTAATTTAATTGTGGTTCCGT 57.487 32.000 19.28 0.00 32.28 4.69
252 253 8.618702 TGAACTAATTTAATTGTGGTTCCGTA 57.381 30.769 19.28 7.94 32.28 4.02
253 254 8.723311 TGAACTAATTTAATTGTGGTTCCGTAG 58.277 33.333 19.28 4.11 32.28 3.51
254 255 7.080353 ACTAATTTAATTGTGGTTCCGTAGC 57.920 36.000 0.00 0.00 0.00 3.58
255 256 5.968528 AATTTAATTGTGGTTCCGTAGCA 57.031 34.783 0.00 0.00 0.00 3.49
256 257 5.968528 ATTTAATTGTGGTTCCGTAGCAA 57.031 34.783 0.00 0.00 35.72 3.91
257 258 4.752661 TTAATTGTGGTTCCGTAGCAAC 57.247 40.909 0.00 0.00 35.72 4.17
266 267 3.325072 CGTAGCAACGCACCAACA 58.675 55.556 0.00 0.00 43.12 3.33
267 268 1.083015 CGTAGCAACGCACCAACAC 60.083 57.895 0.00 0.00 43.12 3.32
268 269 1.281656 GTAGCAACGCACCAACACC 59.718 57.895 0.00 0.00 0.00 4.16
269 270 1.147376 TAGCAACGCACCAACACCT 59.853 52.632 0.00 0.00 0.00 4.00
270 271 0.464735 TAGCAACGCACCAACACCTT 60.465 50.000 0.00 0.00 0.00 3.50
271 272 1.588667 GCAACGCACCAACACCTTG 60.589 57.895 0.00 0.00 0.00 3.61
272 273 1.588667 CAACGCACCAACACCTTGC 60.589 57.895 0.00 0.00 0.00 4.01
273 274 1.752694 AACGCACCAACACCTTGCT 60.753 52.632 0.00 0.00 33.90 3.91
274 275 0.464735 AACGCACCAACACCTTGCTA 60.465 50.000 0.00 0.00 33.90 3.49
275 276 0.884704 ACGCACCAACACCTTGCTAG 60.885 55.000 0.00 0.00 33.90 3.42
276 277 0.884704 CGCACCAACACCTTGCTAGT 60.885 55.000 0.00 0.00 33.90 2.57
277 278 1.606994 CGCACCAACACCTTGCTAGTA 60.607 52.381 0.00 0.00 33.90 1.82
278 279 2.500229 GCACCAACACCTTGCTAGTAA 58.500 47.619 0.00 0.00 33.26 2.24
279 280 2.484264 GCACCAACACCTTGCTAGTAAG 59.516 50.000 13.19 13.19 33.26 2.34
296 297 9.362539 TGCTAGTAAGGTCTTAATTTTTACTCG 57.637 33.333 0.00 0.00 36.36 4.18
297 298 8.815189 GCTAGTAAGGTCTTAATTTTTACTCGG 58.185 37.037 0.00 0.00 36.36 4.63
298 299 9.866798 CTAGTAAGGTCTTAATTTTTACTCGGT 57.133 33.333 0.00 0.00 36.36 4.69
336 337 8.735692 TTTCTATGATATCAGTTCATTGTGCA 57.264 30.769 11.78 0.00 35.50 4.57
337 338 8.913487 TTCTATGATATCAGTTCATTGTGCAT 57.087 30.769 11.78 0.00 35.50 3.96
338 339 8.543862 TCTATGATATCAGTTCATTGTGCATC 57.456 34.615 11.78 0.00 35.50 3.91
339 340 8.152246 TCTATGATATCAGTTCATTGTGCATCA 58.848 33.333 11.78 0.00 35.50 3.07
340 341 6.613755 TGATATCAGTTCATTGTGCATCAG 57.386 37.500 0.00 0.00 0.00 2.90
341 342 3.777465 ATCAGTTCATTGTGCATCAGC 57.223 42.857 0.00 0.00 42.57 4.26
342 343 8.602039 ATGATATCAGTTCATTGTGCATCAGCA 61.602 37.037 11.78 0.00 38.35 4.41
358 359 6.962686 GCATCAGCAATTACACTATTCATGA 58.037 36.000 0.00 0.00 41.58 3.07
359 360 7.076362 GCATCAGCAATTACACTATTCATGAG 58.924 38.462 0.00 0.00 41.58 2.90
360 361 7.041576 GCATCAGCAATTACACTATTCATGAGA 60.042 37.037 0.00 0.00 41.58 3.27
361 362 8.833493 CATCAGCAATTACACTATTCATGAGAA 58.167 33.333 0.00 0.00 38.31 2.87
362 363 8.201554 TCAGCAATTACACTATTCATGAGAAC 57.798 34.615 0.00 0.00 36.39 3.01
363 364 7.823799 TCAGCAATTACACTATTCATGAGAACA 59.176 33.333 0.00 0.00 36.39 3.18
364 365 8.618677 CAGCAATTACACTATTCATGAGAACAT 58.381 33.333 0.00 0.00 36.39 2.71
365 366 9.182214 AGCAATTACACTATTCATGAGAACATT 57.818 29.630 0.00 0.00 36.39 2.71
391 392 6.567602 AAGTATTCATAGAGAGGCTTTGGT 57.432 37.500 0.00 0.00 0.00 3.67
392 393 7.676683 AAGTATTCATAGAGAGGCTTTGGTA 57.323 36.000 0.00 0.00 0.00 3.25
393 394 7.676683 AGTATTCATAGAGAGGCTTTGGTAA 57.323 36.000 0.00 0.00 0.00 2.85
394 395 7.731054 AGTATTCATAGAGAGGCTTTGGTAAG 58.269 38.462 0.00 0.00 34.36 2.34
404 405 2.311124 CTTTGGTAAGCTAGACCGGG 57.689 55.000 6.32 0.00 40.09 5.73
405 406 0.906775 TTTGGTAAGCTAGACCGGGG 59.093 55.000 6.32 0.00 40.09 5.73
406 407 0.041535 TTGGTAAGCTAGACCGGGGA 59.958 55.000 6.32 0.00 40.09 4.81
407 408 0.685458 TGGTAAGCTAGACCGGGGAC 60.685 60.000 6.32 0.00 40.09 4.46
420 421 2.275418 GGGACCCATGGCACGATT 59.725 61.111 6.09 0.00 0.00 3.34
421 422 1.823899 GGGACCCATGGCACGATTC 60.824 63.158 6.09 0.00 0.00 2.52
422 423 1.077787 GGACCCATGGCACGATTCA 60.078 57.895 6.09 0.00 0.00 2.57
423 424 0.679640 GGACCCATGGCACGATTCAA 60.680 55.000 6.09 0.00 0.00 2.69
424 425 1.392589 GACCCATGGCACGATTCAAT 58.607 50.000 6.09 0.00 0.00 2.57
425 426 1.066002 GACCCATGGCACGATTCAATG 59.934 52.381 6.09 0.00 0.00 2.82
426 427 0.386476 CCCATGGCACGATTCAATGG 59.614 55.000 6.09 0.00 0.00 3.16
427 428 1.391577 CCATGGCACGATTCAATGGA 58.608 50.000 0.00 0.00 0.00 3.41
428 429 1.066002 CCATGGCACGATTCAATGGAC 59.934 52.381 0.00 0.00 0.00 4.02
429 430 2.019249 CATGGCACGATTCAATGGACT 58.981 47.619 0.00 0.00 0.00 3.85
430 431 1.737838 TGGCACGATTCAATGGACTC 58.262 50.000 0.00 0.00 0.00 3.36
431 432 1.017387 GGCACGATTCAATGGACTCC 58.983 55.000 0.00 0.00 0.00 3.85
432 433 1.407437 GGCACGATTCAATGGACTCCT 60.407 52.381 0.00 0.00 0.00 3.69
433 434 1.936547 GCACGATTCAATGGACTCCTC 59.063 52.381 0.00 0.00 0.00 3.71
434 435 2.555199 CACGATTCAATGGACTCCTCC 58.445 52.381 0.00 0.00 37.04 4.30
435 436 2.169352 CACGATTCAATGGACTCCTCCT 59.831 50.000 0.00 0.00 37.48 3.69
436 437 2.840651 ACGATTCAATGGACTCCTCCTT 59.159 45.455 0.00 0.00 37.48 3.36
437 438 3.118592 ACGATTCAATGGACTCCTCCTTC 60.119 47.826 0.00 0.00 37.48 3.46
438 439 3.118629 CGATTCAATGGACTCCTCCTTCA 60.119 47.826 0.00 0.00 37.48 3.02
439 440 3.703001 TTCAATGGACTCCTCCTTCAC 57.297 47.619 0.00 0.00 37.48 3.18
440 441 2.619931 TCAATGGACTCCTCCTTCACA 58.380 47.619 0.00 0.00 37.48 3.58
441 442 3.184628 TCAATGGACTCCTCCTTCACAT 58.815 45.455 0.00 0.00 37.48 3.21
442 443 4.361783 TCAATGGACTCCTCCTTCACATA 58.638 43.478 0.00 0.00 37.48 2.29
443 444 4.406972 TCAATGGACTCCTCCTTCACATAG 59.593 45.833 0.00 0.00 37.48 2.23
444 445 2.111384 TGGACTCCTCCTTCACATAGC 58.889 52.381 0.00 0.00 37.48 2.97
445 446 2.292521 TGGACTCCTCCTTCACATAGCT 60.293 50.000 0.00 0.00 37.48 3.32
446 447 2.364002 GGACTCCTCCTTCACATAGCTC 59.636 54.545 0.00 0.00 33.07 4.09
447 448 3.027412 GACTCCTCCTTCACATAGCTCA 58.973 50.000 0.00 0.00 0.00 4.26
448 449 3.640967 GACTCCTCCTTCACATAGCTCAT 59.359 47.826 0.00 0.00 0.00 2.90
449 450 4.036518 ACTCCTCCTTCACATAGCTCATT 58.963 43.478 0.00 0.00 0.00 2.57
450 451 4.100808 ACTCCTCCTTCACATAGCTCATTC 59.899 45.833 0.00 0.00 0.00 2.67
451 452 4.033009 TCCTCCTTCACATAGCTCATTCA 58.967 43.478 0.00 0.00 0.00 2.57
452 453 4.125703 CCTCCTTCACATAGCTCATTCAC 58.874 47.826 0.00 0.00 0.00 3.18
453 454 4.141756 CCTCCTTCACATAGCTCATTCACT 60.142 45.833 0.00 0.00 0.00 3.41
454 455 5.426504 CTCCTTCACATAGCTCATTCACTT 58.573 41.667 0.00 0.00 0.00 3.16
455 456 5.809001 TCCTTCACATAGCTCATTCACTTT 58.191 37.500 0.00 0.00 0.00 2.66
456 457 5.877012 TCCTTCACATAGCTCATTCACTTTC 59.123 40.000 0.00 0.00 0.00 2.62
457 458 5.065731 CCTTCACATAGCTCATTCACTTTCC 59.934 44.000 0.00 0.00 0.00 3.13
458 459 5.426689 TCACATAGCTCATTCACTTTCCT 57.573 39.130 0.00 0.00 0.00 3.36
459 460 6.544928 TCACATAGCTCATTCACTTTCCTA 57.455 37.500 0.00 0.00 0.00 2.94
460 461 7.129457 TCACATAGCTCATTCACTTTCCTAT 57.871 36.000 0.00 0.00 0.00 2.57
461 462 7.212976 TCACATAGCTCATTCACTTTCCTATC 58.787 38.462 0.00 0.00 0.00 2.08
462 463 6.426328 CACATAGCTCATTCACTTTCCTATCC 59.574 42.308 0.00 0.00 0.00 2.59
463 464 6.100279 ACATAGCTCATTCACTTTCCTATCCA 59.900 38.462 0.00 0.00 0.00 3.41
464 465 5.643421 AGCTCATTCACTTTCCTATCCAT 57.357 39.130 0.00 0.00 0.00 3.41
465 466 5.374921 AGCTCATTCACTTTCCTATCCATG 58.625 41.667 0.00 0.00 0.00 3.66
466 467 5.104193 AGCTCATTCACTTTCCTATCCATGT 60.104 40.000 0.00 0.00 0.00 3.21
467 468 5.008415 GCTCATTCACTTTCCTATCCATGTG 59.992 44.000 0.00 0.00 0.00 3.21
468 469 5.439721 TCATTCACTTTCCTATCCATGTGG 58.560 41.667 0.00 0.00 0.00 4.17
469 470 3.281727 TCACTTTCCTATCCATGTGGC 57.718 47.619 0.00 0.00 34.44 5.01
470 471 2.575735 TCACTTTCCTATCCATGTGGCA 59.424 45.455 0.00 0.00 34.44 4.92
471 472 2.684881 CACTTTCCTATCCATGTGGCAC 59.315 50.000 11.55 11.55 34.44 5.01
472 473 2.301346 CTTTCCTATCCATGTGGCACC 58.699 52.381 16.26 0.00 34.44 5.01
473 474 0.180171 TTCCTATCCATGTGGCACCG 59.820 55.000 16.26 6.16 34.44 4.94
474 475 0.689412 TCCTATCCATGTGGCACCGA 60.689 55.000 16.26 8.37 34.44 4.69
475 476 0.180171 CCTATCCATGTGGCACCGAA 59.820 55.000 16.26 0.00 34.44 4.30
476 477 1.202806 CCTATCCATGTGGCACCGAAT 60.203 52.381 16.26 6.18 34.44 3.34
477 478 2.575532 CTATCCATGTGGCACCGAATT 58.424 47.619 16.26 0.00 34.44 2.17
478 479 1.392589 ATCCATGTGGCACCGAATTC 58.607 50.000 16.26 0.00 34.44 2.17
479 480 0.679640 TCCATGTGGCACCGAATTCC 60.680 55.000 16.26 0.00 34.44 3.01
480 481 0.680921 CCATGTGGCACCGAATTCCT 60.681 55.000 16.26 0.00 0.00 3.36
481 482 1.176527 CATGTGGCACCGAATTCCTT 58.823 50.000 16.26 0.00 0.00 3.36
482 483 1.133025 CATGTGGCACCGAATTCCTTC 59.867 52.381 16.26 0.00 0.00 3.46
483 484 0.608035 TGTGGCACCGAATTCCTTCC 60.608 55.000 16.26 0.00 0.00 3.46
484 485 0.322546 GTGGCACCGAATTCCTTCCT 60.323 55.000 6.29 0.00 0.00 3.36
485 486 1.065709 GTGGCACCGAATTCCTTCCTA 60.066 52.381 6.29 0.00 0.00 2.94
486 487 1.209504 TGGCACCGAATTCCTTCCTAG 59.790 52.381 0.00 0.00 0.00 3.02
487 488 1.209747 GGCACCGAATTCCTTCCTAGT 59.790 52.381 0.00 0.00 0.00 2.57
493 494 5.472137 CACCGAATTCCTTCCTAGTTTTCAA 59.528 40.000 0.00 0.00 0.00 2.69
501 502 4.952335 CCTTCCTAGTTTTCAAGGCATCAT 59.048 41.667 0.00 0.00 32.55 2.45
504 505 3.313526 CCTAGTTTTCAAGGCATCATCCG 59.686 47.826 0.00 0.00 0.00 4.18
509 510 1.368641 TCAAGGCATCATCCGTTTCG 58.631 50.000 0.00 0.00 0.00 3.46
510 511 0.248215 CAAGGCATCATCCGTTTCGC 60.248 55.000 0.00 0.00 0.00 4.70
511 512 1.705337 AAGGCATCATCCGTTTCGCG 61.705 55.000 0.00 0.00 40.95 5.87
532 533 4.533222 CGAAAATACGAAAACAAGCTGGT 58.467 39.130 0.00 0.00 35.09 4.00
533 534 5.681880 CGAAAATACGAAAACAAGCTGGTA 58.318 37.500 0.00 0.00 35.09 3.25
534 535 5.788531 CGAAAATACGAAAACAAGCTGGTAG 59.211 40.000 0.00 0.00 35.09 3.18
535 536 6.565247 CGAAAATACGAAAACAAGCTGGTAGT 60.565 38.462 0.00 0.00 35.09 2.73
547 548 1.737363 GCTGGTAGTAGCTCTGTGCAC 60.737 57.143 10.75 10.75 45.94 4.57
576 577 7.205992 TGATCAATTTCCGTCATTTTTCACAA 58.794 30.769 0.00 0.00 0.00 3.33
590 593 0.250989 TCACAACCCATTTCGTCCCC 60.251 55.000 0.00 0.00 0.00 4.81
593 596 1.133294 ACAACCCATTTCGTCCCCTTT 60.133 47.619 0.00 0.00 0.00 3.11
594 597 1.967779 CAACCCATTTCGTCCCCTTTT 59.032 47.619 0.00 0.00 0.00 2.27
597 600 1.741145 CCCATTTCGTCCCCTTTTACG 59.259 52.381 0.00 0.00 40.40 3.18
641 646 0.105246 ACAAACCCATTTCCTGCCCA 60.105 50.000 0.00 0.00 0.00 5.36
695 703 1.209019 ACAGGCTGCTATCTTGTCCAG 59.791 52.381 15.89 0.00 0.00 3.86
705 713 1.317613 TCTTGTCCAGCGCAAATTGT 58.682 45.000 11.47 0.00 0.00 2.71
809 818 1.289800 GCTCCTGTTCCGTTCCGTTC 61.290 60.000 0.00 0.00 0.00 3.95
810 819 0.669625 CTCCTGTTCCGTTCCGTTCC 60.670 60.000 0.00 0.00 0.00 3.62
811 820 2.025418 CCTGTTCCGTTCCGTTCCG 61.025 63.158 0.00 0.00 0.00 4.30
812 821 1.300388 CTGTTCCGTTCCGTTCCGT 60.300 57.895 0.00 0.00 0.00 4.69
813 822 0.877213 CTGTTCCGTTCCGTTCCGTT 60.877 55.000 0.00 0.00 0.00 4.44
882 894 8.621286 CCAATATACTACTCCAAATTGGACAAC 58.379 37.037 11.23 0.00 42.67 3.32
894 912 3.396260 TTGGACAACTGGTGCTACTAC 57.604 47.619 0.00 0.00 38.87 2.73
895 913 2.605257 TGGACAACTGGTGCTACTACT 58.395 47.619 0.00 0.00 38.87 2.57
896 914 3.770046 TGGACAACTGGTGCTACTACTA 58.230 45.455 0.00 0.00 38.87 1.82
927 945 5.105064 TGTTGGGGATTAGCACTAGAAGTAC 60.105 44.000 0.00 0.00 0.00 2.73
928 946 4.616553 TGGGGATTAGCACTAGAAGTACA 58.383 43.478 0.00 0.00 0.00 2.90
930 948 4.202233 GGGGATTAGCACTAGAAGTACACC 60.202 50.000 0.00 0.00 0.00 4.16
931 949 4.499357 GGGATTAGCACTAGAAGTACACCG 60.499 50.000 0.00 0.00 0.00 4.94
1131 1183 4.193334 CGCATCCTCGTCTCGCCA 62.193 66.667 0.00 0.00 0.00 5.69
1258 1310 1.003108 CATATGGTACGCGCACAACA 58.997 50.000 12.27 2.65 0.00 3.33
1260 1312 0.038067 TATGGTACGCGCACAACACT 60.038 50.000 12.27 0.00 0.00 3.55
1434 1498 3.394836 GCCTTCGGCTCCTGGTCT 61.395 66.667 0.00 0.00 46.69 3.85
1773 1849 2.439104 CCTCTACAGCCTGCTCCCC 61.439 68.421 0.00 0.00 0.00 4.81
1774 1850 1.687146 CTCTACAGCCTGCTCCCCA 60.687 63.158 0.00 0.00 0.00 4.96
1779 1855 4.704103 AGCCTGCTCCCCACGAGA 62.704 66.667 0.00 0.00 41.63 4.04
2047 2126 1.071471 GATCCTGGCCCGTACATGG 59.929 63.158 0.00 0.00 0.00 3.66
2071 2150 4.410400 AGCCGCCCAGTAACCTGC 62.410 66.667 0.00 0.00 37.38 4.85
2087 2166 2.721231 GCAGGTGTGCGAGCAAAA 59.279 55.556 0.00 0.00 40.71 2.44
2642 2721 3.382832 CGAGGCGGAGTTCTGGGT 61.383 66.667 0.00 0.00 0.00 4.51
2775 2854 2.416162 GCTGGACAAGTACCTCTTCTCG 60.416 54.545 0.00 0.00 33.63 4.04
2844 2926 2.493973 GAGAGCTCGCAGGGTGAG 59.506 66.667 13.06 2.54 42.38 3.51
3438 3520 1.220206 CAAGATGCTCGAGGGCACT 59.780 57.895 15.58 0.00 45.36 4.40
3528 3613 6.746120 TCTCTCTTTGCTTTACTTTAGTCGT 58.254 36.000 0.00 0.00 0.00 4.34
3529 3614 6.862090 TCTCTCTTTGCTTTACTTTAGTCGTC 59.138 38.462 0.00 0.00 0.00 4.20
3530 3615 5.628193 TCTCTTTGCTTTACTTTAGTCGTCG 59.372 40.000 0.00 0.00 0.00 5.12
3531 3616 5.284079 TCTTTGCTTTACTTTAGTCGTCGT 58.716 37.500 0.00 0.00 0.00 4.34
3532 3617 6.437928 TCTTTGCTTTACTTTAGTCGTCGTA 58.562 36.000 0.00 0.00 0.00 3.43
3706 3804 2.882927 TATGAACTATCCGCGTTGCT 57.117 45.000 4.92 0.00 0.00 3.91
3723 3821 1.168407 GCTGCTGTGCTTCTTGGTGA 61.168 55.000 0.00 0.00 0.00 4.02
3731 3829 1.348696 TGCTTCTTGGTGATGAGCAGA 59.651 47.619 0.00 0.00 34.63 4.26
3765 3863 0.610174 TGAGCGCAGAAAGGAGTGAT 59.390 50.000 11.47 0.00 0.00 3.06
3768 3866 3.056304 GAGCGCAGAAAGGAGTGATATC 58.944 50.000 11.47 0.00 0.00 1.63
3801 3899 2.584064 CGTAGCCTGCATGGACCA 59.416 61.111 0.00 0.00 38.35 4.02
3810 3908 0.888736 TGCATGGACCAAGACCAACG 60.889 55.000 0.00 0.00 40.93 4.10
3813 3911 1.131303 ATGGACCAAGACCAACGGGA 61.131 55.000 0.00 0.00 40.93 5.14
3838 3936 2.650778 CAGCCGCCTTCAAAACCC 59.349 61.111 0.00 0.00 0.00 4.11
3839 3937 2.600470 AGCCGCCTTCAAAACCCC 60.600 61.111 0.00 0.00 0.00 4.95
3917 4018 5.989551 AACCAAGTTCAATTGAATGCAAC 57.010 34.783 23.05 11.22 36.72 4.17
3919 4020 6.403866 ACCAAGTTCAATTGAATGCAACTA 57.596 33.333 23.05 0.00 36.72 2.24
3920 4021 6.215845 ACCAAGTTCAATTGAATGCAACTAC 58.784 36.000 23.05 9.10 36.72 2.73
3939 4040 2.693797 CACATCCTGTGTTCAACTGC 57.306 50.000 0.00 0.00 43.08 4.40
3945 4046 1.143305 CTGTGTTCAACTGCTCTCGG 58.857 55.000 0.00 0.00 0.00 4.63
3955 4056 2.185608 GCTCTCGGCCTCTGGAAC 59.814 66.667 0.00 0.00 34.27 3.62
3971 4073 3.670625 TGGAACCGACAAATAGGTGAAG 58.329 45.455 0.00 0.00 41.21 3.02
3976 4078 4.817517 ACCGACAAATAGGTGAAGTACAG 58.182 43.478 0.00 0.00 39.66 2.74
4022 4140 2.665165 TGGGTGGCTATTTTGCATAGG 58.335 47.619 0.00 0.00 34.04 2.57
4049 4168 2.798283 CCATTTTGTTCAGCAAGTGCAG 59.202 45.455 6.00 0.00 45.16 4.41
4051 4170 1.761449 TTTGTTCAGCAAGTGCAGGA 58.239 45.000 6.00 0.00 45.16 3.86
4057 4176 1.670406 AGCAAGTGCAGGAAGCTCG 60.670 57.895 6.00 0.00 45.94 5.03
4069 4188 4.297510 CAGGAAGCTCGTATCAGATGAAG 58.702 47.826 0.00 0.00 0.00 3.02
4073 4192 5.233263 GGAAGCTCGTATCAGATGAAGAAAC 59.767 44.000 0.00 0.00 0.00 2.78
4085 4204 0.796312 GAAGAAACATGAAGCGCGGA 59.204 50.000 8.83 0.00 0.00 5.54
4149 4300 3.993081 GCTAGTATGCTAATGCTGACCAG 59.007 47.826 0.00 0.00 40.48 4.00
4294 4445 7.545489 CAAGATTTACTACGTTACCTCCTTCT 58.455 38.462 0.00 0.00 0.00 2.85
4419 4570 4.130857 TGCGACACCTGATAACAGAAAAA 58.869 39.130 0.79 0.00 46.03 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.753674 ATAATGATTATTTATGGGGAATCGTGT 57.246 29.630 0.00 0.00 32.12 4.49
22 23 9.720769 CCCAATGAATACGGTCTTAAGTATAAT 57.279 33.333 1.63 0.00 33.63 1.28
23 24 8.707449 ACCCAATGAATACGGTCTTAAGTATAA 58.293 33.333 1.63 0.00 33.63 0.98
24 25 8.145767 CACCCAATGAATACGGTCTTAAGTATA 58.854 37.037 1.63 0.00 33.63 1.47
25 26 6.990349 CACCCAATGAATACGGTCTTAAGTAT 59.010 38.462 1.63 0.00 35.29 2.12
26 27 6.070653 ACACCCAATGAATACGGTCTTAAGTA 60.071 38.462 1.63 0.00 0.00 2.24
27 28 5.183228 CACCCAATGAATACGGTCTTAAGT 58.817 41.667 1.63 0.00 0.00 2.24
28 29 5.183228 ACACCCAATGAATACGGTCTTAAG 58.817 41.667 0.00 0.00 0.00 1.85
29 30 5.168647 ACACCCAATGAATACGGTCTTAA 57.831 39.130 0.00 0.00 0.00 1.85
30 31 4.829872 ACACCCAATGAATACGGTCTTA 57.170 40.909 0.00 0.00 0.00 2.10
31 32 3.713826 ACACCCAATGAATACGGTCTT 57.286 42.857 0.00 0.00 0.00 3.01
32 33 4.163458 ACATACACCCAATGAATACGGTCT 59.837 41.667 0.00 0.00 0.00 3.85
33 34 4.448210 ACATACACCCAATGAATACGGTC 58.552 43.478 0.00 0.00 0.00 4.79
34 35 4.497291 ACATACACCCAATGAATACGGT 57.503 40.909 0.00 0.00 0.00 4.83
35 36 6.227522 TGATACATACACCCAATGAATACGG 58.772 40.000 0.00 0.00 0.00 4.02
36 37 7.819415 AGATGATACATACACCCAATGAATACG 59.181 37.037 0.00 0.00 0.00 3.06
37 38 9.507329 AAGATGATACATACACCCAATGAATAC 57.493 33.333 0.00 0.00 0.00 1.89
38 39 9.725019 GAAGATGATACATACACCCAATGAATA 57.275 33.333 0.00 0.00 0.00 1.75
39 40 8.219868 TGAAGATGATACATACACCCAATGAAT 58.780 33.333 0.00 0.00 0.00 2.57
40 41 7.572814 TGAAGATGATACATACACCCAATGAA 58.427 34.615 0.00 0.00 0.00 2.57
41 42 7.135591 TGAAGATGATACATACACCCAATGA 57.864 36.000 0.00 0.00 0.00 2.57
42 43 7.806409 TTGAAGATGATACATACACCCAATG 57.194 36.000 0.00 0.00 0.00 2.82
71 72 7.212976 TCAAATGCTGCACCTTAACATAAAAA 58.787 30.769 3.57 0.00 0.00 1.94
72 73 6.753180 TCAAATGCTGCACCTTAACATAAAA 58.247 32.000 3.57 0.00 0.00 1.52
73 74 6.015519 ACTCAAATGCTGCACCTTAACATAAA 60.016 34.615 3.57 0.00 0.00 1.40
74 75 5.476599 ACTCAAATGCTGCACCTTAACATAA 59.523 36.000 3.57 0.00 0.00 1.90
75 76 5.009631 ACTCAAATGCTGCACCTTAACATA 58.990 37.500 3.57 0.00 0.00 2.29
76 77 3.828451 ACTCAAATGCTGCACCTTAACAT 59.172 39.130 3.57 0.00 0.00 2.71
77 78 3.004629 CACTCAAATGCTGCACCTTAACA 59.995 43.478 3.57 0.00 0.00 2.41
78 79 3.568538 CACTCAAATGCTGCACCTTAAC 58.431 45.455 3.57 0.00 0.00 2.01
79 80 2.030007 GCACTCAAATGCTGCACCTTAA 60.030 45.455 3.57 0.00 42.62 1.85
80 81 1.541147 GCACTCAAATGCTGCACCTTA 59.459 47.619 3.57 0.00 42.62 2.69
81 82 0.316204 GCACTCAAATGCTGCACCTT 59.684 50.000 3.57 0.00 42.62 3.50
82 83 0.824595 TGCACTCAAATGCTGCACCT 60.825 50.000 3.57 0.00 46.28 4.00
83 84 1.661480 TGCACTCAAATGCTGCACC 59.339 52.632 3.57 0.00 46.28 5.01
85 86 0.594602 GAGTGCACTCAAATGCTGCA 59.405 50.000 36.23 4.13 46.28 4.41
86 87 0.109412 GGAGTGCACTCAAATGCTGC 60.109 55.000 39.71 21.16 46.28 5.25
87 88 1.241165 TGGAGTGCACTCAAATGCTG 58.759 50.000 39.71 0.00 46.28 4.41
88 89 1.610522 GTTGGAGTGCACTCAAATGCT 59.389 47.619 39.71 9.98 46.28 3.79
89 90 1.610522 AGTTGGAGTGCACTCAAATGC 59.389 47.619 39.71 26.72 44.60 3.56
90 91 4.067896 AGTAGTTGGAGTGCACTCAAATG 58.932 43.478 39.71 0.00 44.60 2.32
91 92 4.357918 AGTAGTTGGAGTGCACTCAAAT 57.642 40.909 39.71 31.03 44.60 2.32
92 93 3.838244 AGTAGTTGGAGTGCACTCAAA 57.162 42.857 39.71 34.72 44.60 2.69
93 94 4.948341 TTAGTAGTTGGAGTGCACTCAA 57.052 40.909 39.71 31.47 44.60 3.02
94 95 4.820897 CATTAGTAGTTGGAGTGCACTCA 58.179 43.478 39.71 26.25 44.60 3.41
95 96 3.619038 GCATTAGTAGTTGGAGTGCACTC 59.381 47.826 34.25 34.25 42.14 3.51
96 97 3.261897 AGCATTAGTAGTTGGAGTGCACT 59.738 43.478 21.88 21.88 33.80 4.40
97 98 3.600388 AGCATTAGTAGTTGGAGTGCAC 58.400 45.455 9.40 9.40 33.80 4.57
98 99 3.981071 AGCATTAGTAGTTGGAGTGCA 57.019 42.857 0.00 0.00 33.80 4.57
99 100 6.049149 TGATTAGCATTAGTAGTTGGAGTGC 58.951 40.000 0.00 0.00 0.00 4.40
100 101 8.492673 TTTGATTAGCATTAGTAGTTGGAGTG 57.507 34.615 0.00 0.00 0.00 3.51
101 102 9.167311 CTTTTGATTAGCATTAGTAGTTGGAGT 57.833 33.333 0.00 0.00 0.00 3.85
102 103 8.616076 CCTTTTGATTAGCATTAGTAGTTGGAG 58.384 37.037 0.00 0.00 0.00 3.86
103 104 7.556275 CCCTTTTGATTAGCATTAGTAGTTGGA 59.444 37.037 0.00 0.00 0.00 3.53
104 105 7.339466 ACCCTTTTGATTAGCATTAGTAGTTGG 59.661 37.037 0.00 0.00 0.00 3.77
105 106 8.281212 ACCCTTTTGATTAGCATTAGTAGTTG 57.719 34.615 0.00 0.00 0.00 3.16
106 107 8.739972 CAACCCTTTTGATTAGCATTAGTAGTT 58.260 33.333 0.00 0.00 0.00 2.24
107 108 7.888546 ACAACCCTTTTGATTAGCATTAGTAGT 59.111 33.333 0.00 0.00 0.00 2.73
108 109 8.281212 ACAACCCTTTTGATTAGCATTAGTAG 57.719 34.615 0.00 0.00 0.00 2.57
109 110 9.914834 ATACAACCCTTTTGATTAGCATTAGTA 57.085 29.630 0.00 0.00 0.00 1.82
110 111 8.823220 ATACAACCCTTTTGATTAGCATTAGT 57.177 30.769 0.00 0.00 0.00 2.24
112 113 9.868277 CAAATACAACCCTTTTGATTAGCATTA 57.132 29.630 0.00 0.00 33.24 1.90
113 114 7.823799 CCAAATACAACCCTTTTGATTAGCATT 59.176 33.333 0.00 0.00 33.24 3.56
114 115 7.180051 TCCAAATACAACCCTTTTGATTAGCAT 59.820 33.333 0.00 0.00 33.24 3.79
115 116 6.495181 TCCAAATACAACCCTTTTGATTAGCA 59.505 34.615 0.00 0.00 33.24 3.49
116 117 6.811665 GTCCAAATACAACCCTTTTGATTAGC 59.188 38.462 0.00 0.00 33.24 3.09
117 118 7.891561 TGTCCAAATACAACCCTTTTGATTAG 58.108 34.615 0.00 0.00 33.24 1.73
118 119 7.841282 TGTCCAAATACAACCCTTTTGATTA 57.159 32.000 0.00 0.00 33.24 1.75
119 120 6.739331 TGTCCAAATACAACCCTTTTGATT 57.261 33.333 0.00 0.00 33.24 2.57
120 121 6.933514 ATGTCCAAATACAACCCTTTTGAT 57.066 33.333 0.00 0.00 33.24 2.57
121 122 6.739331 AATGTCCAAATACAACCCTTTTGA 57.261 33.333 0.00 0.00 33.24 2.69
122 123 6.989169 TCAAATGTCCAAATACAACCCTTTTG 59.011 34.615 0.00 0.00 32.02 2.44
123 124 6.989759 GTCAAATGTCCAAATACAACCCTTTT 59.010 34.615 0.00 0.00 32.02 2.27
124 125 6.326323 AGTCAAATGTCCAAATACAACCCTTT 59.674 34.615 0.00 0.00 32.02 3.11
125 126 5.838521 AGTCAAATGTCCAAATACAACCCTT 59.161 36.000 0.00 0.00 32.02 3.95
126 127 5.393866 AGTCAAATGTCCAAATACAACCCT 58.606 37.500 0.00 0.00 32.02 4.34
127 128 5.722021 AGTCAAATGTCCAAATACAACCC 57.278 39.130 0.00 0.00 32.02 4.11
128 129 6.744112 TCAAGTCAAATGTCCAAATACAACC 58.256 36.000 0.00 0.00 32.02 3.77
129 130 8.081633 TGATCAAGTCAAATGTCCAAATACAAC 58.918 33.333 0.00 0.00 32.78 3.32
130 131 8.175925 TGATCAAGTCAAATGTCCAAATACAA 57.824 30.769 0.00 0.00 32.78 2.41
131 132 7.757941 TGATCAAGTCAAATGTCCAAATACA 57.242 32.000 0.00 0.00 32.78 2.29
132 133 7.917505 GGATGATCAAGTCAAATGTCCAAATAC 59.082 37.037 0.00 0.00 40.97 1.89
133 134 7.614974 TGGATGATCAAGTCAAATGTCCAAATA 59.385 33.333 0.00 0.00 38.64 1.40
134 135 6.438108 TGGATGATCAAGTCAAATGTCCAAAT 59.562 34.615 0.00 0.00 38.64 2.32
135 136 5.774184 TGGATGATCAAGTCAAATGTCCAAA 59.226 36.000 0.00 0.00 38.64 3.28
136 137 5.183713 GTGGATGATCAAGTCAAATGTCCAA 59.816 40.000 9.81 0.00 41.54 3.53
137 138 4.701651 GTGGATGATCAAGTCAAATGTCCA 59.298 41.667 0.00 1.76 39.05 4.02
138 139 4.701651 TGTGGATGATCAAGTCAAATGTCC 59.298 41.667 0.00 0.00 40.97 4.02
139 140 5.885230 TGTGGATGATCAAGTCAAATGTC 57.115 39.130 0.00 0.00 40.97 3.06
140 141 9.803507 ATATATGTGGATGATCAAGTCAAATGT 57.196 29.630 0.00 0.80 40.97 2.71
142 143 9.803507 ACATATATGTGGATGATCAAGTCAAAT 57.196 29.630 17.60 2.09 38.96 2.32
143 144 9.276590 GACATATATGTGGATGATCAAGTCAAA 57.723 33.333 22.93 0.00 41.95 2.69
144 145 7.879677 GGACATATATGTGGATGATCAAGTCAA 59.120 37.037 22.93 0.00 41.95 3.18
145 146 7.389232 GGACATATATGTGGATGATCAAGTCA 58.611 38.462 22.93 0.00 41.95 3.41
146 147 6.820656 GGGACATATATGTGGATGATCAAGTC 59.179 42.308 22.93 3.73 41.95 3.01
147 148 6.296662 GGGGACATATATGTGGATGATCAAGT 60.297 42.308 22.93 0.00 41.95 3.16
148 149 6.069789 AGGGGACATATATGTGGATGATCAAG 60.070 42.308 22.93 0.00 41.95 3.02
149 150 5.792188 AGGGGACATATATGTGGATGATCAA 59.208 40.000 22.93 0.00 41.95 2.57
150 151 5.353125 AGGGGACATATATGTGGATGATCA 58.647 41.667 22.93 0.00 41.95 2.92
151 152 5.965033 AGGGGACATATATGTGGATGATC 57.035 43.478 22.93 6.51 41.95 2.92
152 153 5.192522 GGAAGGGGACATATATGTGGATGAT 59.807 44.000 22.93 4.92 41.95 2.45
153 154 4.536090 GGAAGGGGACATATATGTGGATGA 59.464 45.833 22.93 0.00 41.95 2.92
154 155 4.289410 TGGAAGGGGACATATATGTGGATG 59.711 45.833 22.93 0.00 41.95 3.51
155 156 4.512298 TGGAAGGGGACATATATGTGGAT 58.488 43.478 22.93 4.73 41.95 3.41
156 157 3.948126 TGGAAGGGGACATATATGTGGA 58.052 45.455 22.93 0.00 41.95 4.02
157 158 4.934797 ATGGAAGGGGACATATATGTGG 57.065 45.455 22.93 0.00 41.95 4.17
158 159 7.050377 GTCATATGGAAGGGGACATATATGTG 58.950 42.308 22.93 4.18 41.95 3.21
159 160 6.968248 AGTCATATGGAAGGGGACATATATGT 59.032 38.462 18.31 18.31 45.16 2.29
160 161 7.443302 AGTCATATGGAAGGGGACATATATG 57.557 40.000 11.29 11.29 38.00 1.78
161 162 7.584202 GCAAGTCATATGGAAGGGGACATATAT 60.584 40.741 2.13 0.00 38.00 0.86
162 163 6.296432 GCAAGTCATATGGAAGGGGACATATA 60.296 42.308 2.13 0.00 38.00 0.86
163 164 5.515534 GCAAGTCATATGGAAGGGGACATAT 60.516 44.000 2.13 0.00 40.03 1.78
164 165 4.202461 GCAAGTCATATGGAAGGGGACATA 60.202 45.833 2.13 0.00 34.40 2.29
165 166 3.435601 GCAAGTCATATGGAAGGGGACAT 60.436 47.826 2.13 0.00 0.00 3.06
166 167 2.092429 GCAAGTCATATGGAAGGGGACA 60.092 50.000 2.13 0.00 0.00 4.02
167 168 2.173569 AGCAAGTCATATGGAAGGGGAC 59.826 50.000 2.13 0.00 0.00 4.46
168 169 2.492025 AGCAAGTCATATGGAAGGGGA 58.508 47.619 2.13 0.00 0.00 4.81
169 170 3.303351 AAGCAAGTCATATGGAAGGGG 57.697 47.619 2.13 0.00 0.00 4.79
170 171 6.966534 AATTAAGCAAGTCATATGGAAGGG 57.033 37.500 2.13 0.00 0.00 3.95
171 172 8.517878 CCATAATTAAGCAAGTCATATGGAAGG 58.482 37.037 2.13 0.00 40.32 3.46
172 173 9.288576 TCCATAATTAAGCAAGTCATATGGAAG 57.711 33.333 2.13 0.00 42.45 3.46
174 175 9.639563 TTTCCATAATTAAGCAAGTCATATGGA 57.360 29.630 2.13 7.36 43.23 3.41
203 204 9.453572 TCAGCTATGTCTTGAAGTTTGATAAAT 57.546 29.630 0.00 0.00 0.00 1.40
204 205 8.846943 TCAGCTATGTCTTGAAGTTTGATAAA 57.153 30.769 0.00 0.00 0.00 1.40
205 206 8.721478 GTTCAGCTATGTCTTGAAGTTTGATAA 58.279 33.333 0.00 0.00 0.00 1.75
206 207 8.097038 AGTTCAGCTATGTCTTGAAGTTTGATA 58.903 33.333 0.00 0.00 0.00 2.15
207 208 6.939163 AGTTCAGCTATGTCTTGAAGTTTGAT 59.061 34.615 0.00 0.00 0.00 2.57
208 209 6.291377 AGTTCAGCTATGTCTTGAAGTTTGA 58.709 36.000 0.00 0.00 0.00 2.69
209 210 6.551385 AGTTCAGCTATGTCTTGAAGTTTG 57.449 37.500 0.00 0.00 0.00 2.93
210 211 8.854614 ATTAGTTCAGCTATGTCTTGAAGTTT 57.145 30.769 0.00 0.00 0.00 2.66
211 212 8.854614 AATTAGTTCAGCTATGTCTTGAAGTT 57.145 30.769 0.00 0.00 0.00 2.66
212 213 8.854614 AAATTAGTTCAGCTATGTCTTGAAGT 57.145 30.769 0.00 0.00 0.00 3.01
219 220 9.722056 CCACAATTAAATTAGTTCAGCTATGTC 57.278 33.333 0.00 0.00 0.00 3.06
220 221 9.243105 ACCACAATTAAATTAGTTCAGCTATGT 57.757 29.630 0.00 0.00 0.00 2.29
223 224 8.736244 GGAACCACAATTAAATTAGTTCAGCTA 58.264 33.333 0.00 0.00 0.00 3.32
224 225 7.574967 CGGAACCACAATTAAATTAGTTCAGCT 60.575 37.037 0.00 0.00 0.00 4.24
225 226 6.526674 CGGAACCACAATTAAATTAGTTCAGC 59.473 38.462 0.00 0.00 0.00 4.26
226 227 7.590279 ACGGAACCACAATTAAATTAGTTCAG 58.410 34.615 0.00 0.00 0.00 3.02
227 228 7.513371 ACGGAACCACAATTAAATTAGTTCA 57.487 32.000 0.00 0.00 0.00 3.18
228 229 7.695201 GCTACGGAACCACAATTAAATTAGTTC 59.305 37.037 0.00 0.00 0.00 3.01
229 230 7.175293 TGCTACGGAACCACAATTAAATTAGTT 59.825 33.333 0.00 0.00 0.00 2.24
230 231 6.655848 TGCTACGGAACCACAATTAAATTAGT 59.344 34.615 0.00 0.00 0.00 2.24
231 232 7.079182 TGCTACGGAACCACAATTAAATTAG 57.921 36.000 0.00 0.00 0.00 1.73
232 233 7.306953 GTTGCTACGGAACCACAATTAAATTA 58.693 34.615 0.00 0.00 0.00 1.40
233 234 5.968528 TGCTACGGAACCACAATTAAATT 57.031 34.783 0.00 0.00 0.00 1.82
234 235 5.618195 CGTTGCTACGGAACCACAATTAAAT 60.618 40.000 13.04 0.00 43.94 1.40
235 236 4.319622 CGTTGCTACGGAACCACAATTAAA 60.320 41.667 13.04 0.00 43.94 1.52
236 237 3.186817 CGTTGCTACGGAACCACAATTAA 59.813 43.478 13.04 0.00 43.94 1.40
237 238 2.737783 CGTTGCTACGGAACCACAATTA 59.262 45.455 13.04 0.00 43.94 1.40
238 239 1.533731 CGTTGCTACGGAACCACAATT 59.466 47.619 13.04 0.00 43.94 2.32
239 240 1.153353 CGTTGCTACGGAACCACAAT 58.847 50.000 13.04 0.00 43.94 2.71
240 241 2.607457 CGTTGCTACGGAACCACAA 58.393 52.632 13.04 0.00 43.94 3.33
241 242 2.646117 TGCGTTGCTACGGAACCACA 62.646 55.000 21.61 7.50 45.36 4.17
242 243 1.957186 TGCGTTGCTACGGAACCAC 60.957 57.895 21.61 4.95 45.36 4.16
243 244 2.422165 TGCGTTGCTACGGAACCA 59.578 55.556 21.61 8.55 45.36 3.67
250 251 1.164041 AGGTGTTGGTGCGTTGCTAC 61.164 55.000 0.00 0.00 0.00 3.58
251 252 0.464735 AAGGTGTTGGTGCGTTGCTA 60.465 50.000 0.00 0.00 0.00 3.49
252 253 1.752694 AAGGTGTTGGTGCGTTGCT 60.753 52.632 0.00 0.00 0.00 3.91
253 254 1.588667 CAAGGTGTTGGTGCGTTGC 60.589 57.895 0.00 0.00 0.00 4.17
254 255 1.588667 GCAAGGTGTTGGTGCGTTG 60.589 57.895 0.00 0.00 33.87 4.10
255 256 0.464735 TAGCAAGGTGTTGGTGCGTT 60.465 50.000 0.19 0.00 44.20 4.84
256 257 0.884704 CTAGCAAGGTGTTGGTGCGT 60.885 55.000 0.19 0.00 44.20 5.24
257 258 0.884704 ACTAGCAAGGTGTTGGTGCG 60.885 55.000 0.19 0.00 44.20 5.34
258 259 2.178912 TACTAGCAAGGTGTTGGTGC 57.821 50.000 0.19 0.00 44.20 5.01
259 260 3.074412 CCTTACTAGCAAGGTGTTGGTG 58.926 50.000 13.03 0.00 44.20 4.17
260 261 3.418684 CCTTACTAGCAAGGTGTTGGT 57.581 47.619 13.03 0.00 46.20 3.67
270 271 9.362539 CGAGTAAAAATTAAGACCTTACTAGCA 57.637 33.333 0.00 0.00 33.94 3.49
271 272 8.815189 CCGAGTAAAAATTAAGACCTTACTAGC 58.185 37.037 0.00 0.00 33.94 3.42
272 273 9.866798 ACCGAGTAAAAATTAAGACCTTACTAG 57.133 33.333 0.00 0.00 33.94 2.57
310 311 9.176460 TGCACAATGAACTGATATCATAGAAAA 57.824 29.630 5.72 0.00 36.53 2.29
311 312 8.735692 TGCACAATGAACTGATATCATAGAAA 57.264 30.769 5.72 0.00 36.53 2.52
312 313 8.913487 ATGCACAATGAACTGATATCATAGAA 57.087 30.769 5.72 0.00 36.53 2.10
313 314 8.152246 TGATGCACAATGAACTGATATCATAGA 58.848 33.333 5.72 0.00 36.53 1.98
314 315 8.319143 TGATGCACAATGAACTGATATCATAG 57.681 34.615 5.72 0.00 36.53 2.23
315 316 7.094933 GCTGATGCACAATGAACTGATATCATA 60.095 37.037 5.72 0.00 36.50 2.15
316 317 6.294010 GCTGATGCACAATGAACTGATATCAT 60.294 38.462 5.72 0.00 37.88 2.45
317 318 5.008316 GCTGATGCACAATGAACTGATATCA 59.992 40.000 5.07 5.07 39.41 2.15
318 319 5.008316 TGCTGATGCACAATGAACTGATATC 59.992 40.000 0.00 0.00 45.31 1.63
319 320 4.885325 TGCTGATGCACAATGAACTGATAT 59.115 37.500 0.00 0.00 45.31 1.63
320 321 4.263435 TGCTGATGCACAATGAACTGATA 58.737 39.130 0.00 0.00 45.31 2.15
321 322 3.086282 TGCTGATGCACAATGAACTGAT 58.914 40.909 0.00 0.00 45.31 2.90
322 323 2.506444 TGCTGATGCACAATGAACTGA 58.494 42.857 0.00 0.00 45.31 3.41
334 335 6.962686 TCATGAATAGTGTAATTGCTGATGC 58.037 36.000 0.00 0.00 40.20 3.91
335 336 8.374327 TCTCATGAATAGTGTAATTGCTGATG 57.626 34.615 0.00 0.00 0.00 3.07
336 337 8.834465 GTTCTCATGAATAGTGTAATTGCTGAT 58.166 33.333 0.00 0.00 34.40 2.90
337 338 7.823799 TGTTCTCATGAATAGTGTAATTGCTGA 59.176 33.333 0.00 0.00 34.40 4.26
338 339 7.977904 TGTTCTCATGAATAGTGTAATTGCTG 58.022 34.615 0.00 0.00 34.40 4.41
339 340 8.743085 ATGTTCTCATGAATAGTGTAATTGCT 57.257 30.769 0.00 0.00 34.40 3.91
365 366 9.381038 ACCAAAGCCTCTCTATGAATACTTATA 57.619 33.333 0.00 0.00 0.00 0.98
366 367 8.268878 ACCAAAGCCTCTCTATGAATACTTAT 57.731 34.615 0.00 0.00 0.00 1.73
367 368 7.676683 ACCAAAGCCTCTCTATGAATACTTA 57.323 36.000 0.00 0.00 0.00 2.24
368 369 6.567602 ACCAAAGCCTCTCTATGAATACTT 57.432 37.500 0.00 0.00 0.00 2.24
369 370 7.676683 TTACCAAAGCCTCTCTATGAATACT 57.323 36.000 0.00 0.00 0.00 2.12
370 371 7.954788 CTTACCAAAGCCTCTCTATGAATAC 57.045 40.000 0.00 0.00 0.00 1.89
385 386 1.134491 CCCCGGTCTAGCTTACCAAAG 60.134 57.143 15.89 5.93 36.78 2.77
386 387 0.906775 CCCCGGTCTAGCTTACCAAA 59.093 55.000 15.89 0.00 36.78 3.28
387 388 0.041535 TCCCCGGTCTAGCTTACCAA 59.958 55.000 15.89 0.00 36.78 3.67
388 389 0.685458 GTCCCCGGTCTAGCTTACCA 60.685 60.000 15.89 0.00 36.78 3.25
389 390 1.398174 GGTCCCCGGTCTAGCTTACC 61.398 65.000 0.00 7.68 0.00 2.85
390 391 1.398174 GGGTCCCCGGTCTAGCTTAC 61.398 65.000 0.00 0.00 0.00 2.34
391 392 1.075748 GGGTCCCCGGTCTAGCTTA 60.076 63.158 0.00 0.00 0.00 3.09
392 393 2.365237 GGGTCCCCGGTCTAGCTT 60.365 66.667 0.00 0.00 0.00 3.74
393 394 3.023045 ATGGGTCCCCGGTCTAGCT 62.023 63.158 5.13 0.00 39.42 3.32
394 395 2.446036 ATGGGTCCCCGGTCTAGC 60.446 66.667 5.13 0.00 39.42 3.42
395 396 2.140792 CCATGGGTCCCCGGTCTAG 61.141 68.421 5.13 0.00 39.42 2.43
396 397 2.041301 CCATGGGTCCCCGGTCTA 60.041 66.667 5.13 0.00 39.42 2.59
402 403 3.358932 AATCGTGCCATGGGTCCCC 62.359 63.158 15.13 0.00 0.00 4.81
403 404 1.823899 GAATCGTGCCATGGGTCCC 60.824 63.158 15.13 0.00 0.00 4.46
404 405 0.679640 TTGAATCGTGCCATGGGTCC 60.680 55.000 15.13 0.00 0.00 4.46
405 406 1.066002 CATTGAATCGTGCCATGGGTC 59.934 52.381 15.13 0.00 0.00 4.46
406 407 1.105457 CATTGAATCGTGCCATGGGT 58.895 50.000 15.13 0.00 0.00 4.51
407 408 0.386476 CCATTGAATCGTGCCATGGG 59.614 55.000 15.13 0.00 0.00 4.00
408 409 1.066002 GTCCATTGAATCGTGCCATGG 59.934 52.381 7.63 7.63 0.00 3.66
409 410 2.019249 AGTCCATTGAATCGTGCCATG 58.981 47.619 0.00 0.00 0.00 3.66
410 411 2.292267 GAGTCCATTGAATCGTGCCAT 58.708 47.619 0.00 0.00 0.00 4.40
411 412 1.678728 GGAGTCCATTGAATCGTGCCA 60.679 52.381 3.60 0.00 36.46 4.92
412 413 1.017387 GGAGTCCATTGAATCGTGCC 58.983 55.000 3.60 0.00 36.46 5.01
413 414 1.936547 GAGGAGTCCATTGAATCGTGC 59.063 52.381 12.86 0.00 36.46 5.34
414 415 2.169352 AGGAGGAGTCCATTGAATCGTG 59.831 50.000 12.86 0.00 46.80 4.35
415 416 2.472029 AGGAGGAGTCCATTGAATCGT 58.528 47.619 12.86 0.00 46.80 3.73
416 417 3.118629 TGAAGGAGGAGTCCATTGAATCG 60.119 47.826 12.86 0.00 46.80 3.34
417 418 4.195416 GTGAAGGAGGAGTCCATTGAATC 58.805 47.826 12.86 0.00 46.80 2.52
418 419 3.588842 TGTGAAGGAGGAGTCCATTGAAT 59.411 43.478 12.86 0.00 46.80 2.57
419 420 2.978978 TGTGAAGGAGGAGTCCATTGAA 59.021 45.455 12.86 0.00 46.80 2.69
420 421 2.619931 TGTGAAGGAGGAGTCCATTGA 58.380 47.619 12.86 0.00 46.80 2.57
421 422 3.641434 ATGTGAAGGAGGAGTCCATTG 57.359 47.619 12.86 0.00 46.80 2.82
422 423 3.135530 GCTATGTGAAGGAGGAGTCCATT 59.864 47.826 12.86 2.77 46.80 3.16
423 424 2.703007 GCTATGTGAAGGAGGAGTCCAT 59.297 50.000 12.86 0.00 46.80 3.41
424 425 2.111384 GCTATGTGAAGGAGGAGTCCA 58.889 52.381 12.86 0.00 46.80 4.02
425 426 2.364002 GAGCTATGTGAAGGAGGAGTCC 59.636 54.545 0.00 0.00 44.33 3.85
426 427 3.027412 TGAGCTATGTGAAGGAGGAGTC 58.973 50.000 0.00 0.00 0.00 3.36
427 428 3.107402 TGAGCTATGTGAAGGAGGAGT 57.893 47.619 0.00 0.00 0.00 3.85
428 429 4.100653 TGAATGAGCTATGTGAAGGAGGAG 59.899 45.833 0.00 0.00 0.00 3.69
429 430 4.033009 TGAATGAGCTATGTGAAGGAGGA 58.967 43.478 0.00 0.00 0.00 3.71
430 431 4.125703 GTGAATGAGCTATGTGAAGGAGG 58.874 47.826 0.00 0.00 0.00 4.30
431 432 5.021033 AGTGAATGAGCTATGTGAAGGAG 57.979 43.478 0.00 0.00 0.00 3.69
432 433 5.426689 AAGTGAATGAGCTATGTGAAGGA 57.573 39.130 0.00 0.00 0.00 3.36
433 434 5.065731 GGAAAGTGAATGAGCTATGTGAAGG 59.934 44.000 0.00 0.00 0.00 3.46
434 435 5.879223 AGGAAAGTGAATGAGCTATGTGAAG 59.121 40.000 0.00 0.00 0.00 3.02
435 436 5.809001 AGGAAAGTGAATGAGCTATGTGAA 58.191 37.500 0.00 0.00 0.00 3.18
436 437 5.426689 AGGAAAGTGAATGAGCTATGTGA 57.573 39.130 0.00 0.00 0.00 3.58
437 438 6.426328 GGATAGGAAAGTGAATGAGCTATGTG 59.574 42.308 0.00 0.00 0.00 3.21
438 439 6.100279 TGGATAGGAAAGTGAATGAGCTATGT 59.900 38.462 0.00 0.00 0.00 2.29
439 440 6.528321 TGGATAGGAAAGTGAATGAGCTATG 58.472 40.000 0.00 0.00 0.00 2.23
440 441 6.753913 TGGATAGGAAAGTGAATGAGCTAT 57.246 37.500 0.00 0.00 0.00 2.97
441 442 6.100279 ACATGGATAGGAAAGTGAATGAGCTA 59.900 38.462 0.00 0.00 0.00 3.32
442 443 5.104193 ACATGGATAGGAAAGTGAATGAGCT 60.104 40.000 0.00 0.00 0.00 4.09
443 444 5.008415 CACATGGATAGGAAAGTGAATGAGC 59.992 44.000 0.00 0.00 0.00 4.26
444 445 5.530171 CCACATGGATAGGAAAGTGAATGAG 59.470 44.000 0.00 0.00 37.39 2.90
445 446 5.439721 CCACATGGATAGGAAAGTGAATGA 58.560 41.667 0.00 0.00 37.39 2.57
446 447 4.037208 GCCACATGGATAGGAAAGTGAATG 59.963 45.833 0.87 0.00 37.39 2.67
447 448 4.210331 GCCACATGGATAGGAAAGTGAAT 58.790 43.478 0.87 0.00 37.39 2.57
448 449 3.010027 TGCCACATGGATAGGAAAGTGAA 59.990 43.478 0.87 0.00 37.39 3.18
449 450 2.575735 TGCCACATGGATAGGAAAGTGA 59.424 45.455 0.87 0.00 37.39 3.41
450 451 2.684881 GTGCCACATGGATAGGAAAGTG 59.315 50.000 0.87 0.00 37.39 3.16
451 452 2.357154 GGTGCCACATGGATAGGAAAGT 60.357 50.000 0.87 0.00 37.39 2.66
452 453 2.301346 GGTGCCACATGGATAGGAAAG 58.699 52.381 0.87 0.00 37.39 2.62
453 454 1.408127 CGGTGCCACATGGATAGGAAA 60.408 52.381 0.87 0.00 37.39 3.13
454 455 0.180171 CGGTGCCACATGGATAGGAA 59.820 55.000 0.87 0.00 37.39 3.36
455 456 0.689412 TCGGTGCCACATGGATAGGA 60.689 55.000 0.87 0.00 37.39 2.94
456 457 0.180171 TTCGGTGCCACATGGATAGG 59.820 55.000 0.87 0.00 37.39 2.57
457 458 2.260844 ATTCGGTGCCACATGGATAG 57.739 50.000 0.87 0.00 37.39 2.08
458 459 2.571212 GAATTCGGTGCCACATGGATA 58.429 47.619 0.87 0.00 37.39 2.59
459 460 1.392589 GAATTCGGTGCCACATGGAT 58.607 50.000 0.87 0.00 37.39 3.41
460 461 0.679640 GGAATTCGGTGCCACATGGA 60.680 55.000 0.87 0.00 37.39 3.41
461 462 0.680921 AGGAATTCGGTGCCACATGG 60.681 55.000 0.00 0.00 38.53 3.66
462 463 1.133025 GAAGGAATTCGGTGCCACATG 59.867 52.381 0.00 0.00 0.00 3.21
463 464 1.463674 GAAGGAATTCGGTGCCACAT 58.536 50.000 0.00 0.00 0.00 3.21
464 465 0.608035 GGAAGGAATTCGGTGCCACA 60.608 55.000 0.00 0.00 0.00 4.17
465 466 0.322546 AGGAAGGAATTCGGTGCCAC 60.323 55.000 6.29 0.00 0.00 5.01
466 467 1.209504 CTAGGAAGGAATTCGGTGCCA 59.790 52.381 6.29 0.00 0.00 4.92
467 468 1.209747 ACTAGGAAGGAATTCGGTGCC 59.790 52.381 0.00 0.00 0.00 5.01
468 469 2.693267 ACTAGGAAGGAATTCGGTGC 57.307 50.000 0.00 0.00 0.00 5.01
469 470 5.001232 TGAAAACTAGGAAGGAATTCGGTG 58.999 41.667 0.00 0.00 0.00 4.94
470 471 5.237236 TGAAAACTAGGAAGGAATTCGGT 57.763 39.130 0.00 0.00 0.00 4.69
471 472 5.123979 CCTTGAAAACTAGGAAGGAATTCGG 59.876 44.000 0.00 0.00 37.74 4.30
472 473 5.392057 GCCTTGAAAACTAGGAAGGAATTCG 60.392 44.000 0.00 0.00 37.74 3.34
473 474 5.476945 TGCCTTGAAAACTAGGAAGGAATTC 59.523 40.000 0.00 0.00 37.74 2.17
474 475 5.393866 TGCCTTGAAAACTAGGAAGGAATT 58.606 37.500 0.00 0.00 37.74 2.17
475 476 4.998051 TGCCTTGAAAACTAGGAAGGAAT 58.002 39.130 0.00 0.00 37.74 3.01
476 477 4.447138 TGCCTTGAAAACTAGGAAGGAA 57.553 40.909 0.00 0.00 37.74 3.36
477 478 4.042809 TGATGCCTTGAAAACTAGGAAGGA 59.957 41.667 0.00 0.00 37.74 3.36
478 479 4.335416 TGATGCCTTGAAAACTAGGAAGG 58.665 43.478 0.00 0.00 38.43 3.46
479 480 5.067023 GGATGATGCCTTGAAAACTAGGAAG 59.933 44.000 0.00 0.00 0.00 3.46
480 481 4.949856 GGATGATGCCTTGAAAACTAGGAA 59.050 41.667 0.00 0.00 0.00 3.36
481 482 4.526970 GGATGATGCCTTGAAAACTAGGA 58.473 43.478 0.00 0.00 0.00 2.94
482 483 3.313526 CGGATGATGCCTTGAAAACTAGG 59.686 47.826 0.00 0.00 0.00 3.02
483 484 3.941483 ACGGATGATGCCTTGAAAACTAG 59.059 43.478 0.00 0.00 0.00 2.57
484 485 3.950397 ACGGATGATGCCTTGAAAACTA 58.050 40.909 0.00 0.00 0.00 2.24
485 486 2.795329 ACGGATGATGCCTTGAAAACT 58.205 42.857 0.00 0.00 0.00 2.66
486 487 3.575965 AACGGATGATGCCTTGAAAAC 57.424 42.857 0.00 0.00 0.00 2.43
487 488 3.365868 CGAAACGGATGATGCCTTGAAAA 60.366 43.478 0.00 0.00 0.00 2.29
493 494 2.173669 CGCGAAACGGATGATGCCT 61.174 57.895 0.00 0.00 38.44 4.75
501 502 1.695813 TCGTATTTTCGCGAAACGGA 58.304 45.000 32.02 23.58 43.89 4.69
509 510 3.360758 CCAGCTTGTTTTCGTATTTTCGC 59.639 43.478 0.00 0.00 0.00 4.70
510 511 4.533222 ACCAGCTTGTTTTCGTATTTTCG 58.467 39.130 0.00 0.00 0.00 3.46
511 512 6.665465 ACTACCAGCTTGTTTTCGTATTTTC 58.335 36.000 0.00 0.00 0.00 2.29
527 528 0.532573 TGCACAGAGCTACTACCAGC 59.467 55.000 0.00 0.00 45.94 4.85
532 533 3.356290 TCAGATGTGCACAGAGCTACTA 58.644 45.455 25.84 8.38 45.94 1.82
533 534 2.174360 TCAGATGTGCACAGAGCTACT 58.826 47.619 25.84 13.30 45.94 2.57
534 535 2.662006 TCAGATGTGCACAGAGCTAC 57.338 50.000 25.84 11.38 45.94 3.58
535 536 2.762327 TGATCAGATGTGCACAGAGCTA 59.238 45.455 25.84 9.72 45.94 3.32
543 544 3.346315 ACGGAAATTGATCAGATGTGCA 58.654 40.909 0.00 0.00 0.00 4.57
544 545 3.374988 TGACGGAAATTGATCAGATGTGC 59.625 43.478 0.00 0.00 0.00 4.57
547 548 7.756272 TGAAAAATGACGGAAATTGATCAGATG 59.244 33.333 0.00 0.00 0.00 2.90
576 577 2.799017 GTAAAAGGGGACGAAATGGGT 58.201 47.619 0.00 0.00 0.00 4.51
597 600 6.040247 AGACTTTTGAAAACGAAAATGGGTC 58.960 36.000 0.00 0.00 0.00 4.46
641 646 7.286316 CCCATTGGCTATTCATTTTCTCTACTT 59.714 37.037 0.00 0.00 0.00 2.24
695 703 4.201523 GCTCACTGATTTTACAATTTGCGC 60.202 41.667 0.00 0.00 0.00 6.09
705 713 2.424601 GCATGGCTGCTCACTGATTTTA 59.575 45.455 0.00 0.00 45.32 1.52
726 734 2.046892 CTTGGACGACCTGGCTGG 60.047 66.667 9.11 9.11 42.93 4.85
727 735 1.374758 GTCTTGGACGACCTGGCTG 60.375 63.158 5.33 0.00 37.04 4.85
728 736 3.060866 GTCTTGGACGACCTGGCT 58.939 61.111 5.33 0.00 37.04 4.75
810 819 4.348427 TTTGTCTGCGCGCGAACG 62.348 61.111 37.18 20.27 44.07 3.95
811 820 2.497628 CTTTGTCTGCGCGCGAAC 60.498 61.111 37.18 26.48 0.00 3.95
812 821 2.660224 TCTTTGTCTGCGCGCGAA 60.660 55.556 37.18 25.53 0.00 4.70
813 822 2.466520 TAGTCTTTGTCTGCGCGCGA 62.467 55.000 37.18 22.86 0.00 5.87
882 894 6.512342 ACAGTTAACTAGTAGTAGCACCAG 57.488 41.667 8.04 0.00 0.00 4.00
894 912 5.585047 GTGCTAATCCCCAACAGTTAACTAG 59.415 44.000 8.04 5.71 0.00 2.57
895 913 5.249852 AGTGCTAATCCCCAACAGTTAACTA 59.750 40.000 8.04 0.00 0.00 2.24
896 914 4.042934 AGTGCTAATCCCCAACAGTTAACT 59.957 41.667 1.12 1.12 0.00 2.24
927 945 0.321564 TGAATCTGGTGGAAGCGGTG 60.322 55.000 0.00 0.00 42.52 4.94
928 946 0.620556 ATGAATCTGGTGGAAGCGGT 59.379 50.000 0.00 0.00 42.52 5.68
930 948 1.303309 GGATGAATCTGGTGGAAGCG 58.697 55.000 0.00 0.00 36.92 4.68
931 949 2.425143 TGGATGAATCTGGTGGAAGC 57.575 50.000 0.00 0.00 0.00 3.86
1387 1451 3.470567 GTCGTTGAGCGTCAGCCG 61.471 66.667 0.00 0.00 46.67 5.52
1434 1498 3.766691 GTGGGGTCGCCGAAGCTA 61.767 66.667 0.87 0.00 36.60 3.32
1446 1510 4.082523 ATGAGCGTGTCCGTGGGG 62.083 66.667 0.00 0.00 36.15 4.96
1585 1661 2.478890 CGTAGATGGAGCCCGACGT 61.479 63.158 0.00 0.00 0.00 4.34
1587 1663 2.027751 GCGTAGATGGAGCCCGAC 59.972 66.667 0.00 0.00 0.00 4.79
1842 1918 1.290009 GCAGATGGTGTTGTTGCCC 59.710 57.895 0.00 0.00 0.00 5.36
2071 2150 0.317269 CACTTTTGCTCGCACACCTG 60.317 55.000 0.00 0.00 0.00 4.00
2083 2162 2.613506 GGTCGTCCCGGCACTTTTG 61.614 63.158 0.00 0.00 30.88 2.44
2327 2406 1.878522 GCGATGTTGCGGATCGTCT 60.879 57.895 11.87 0.00 43.74 4.18
2642 2721 1.522092 GCGATGATGGTCACCTCCA 59.478 57.895 0.00 0.00 42.01 3.86
3087 3169 2.586079 CACTCGGGCGCCATGTAG 60.586 66.667 30.85 20.50 0.00 2.74
3465 3547 0.036010 CCTGGACGCAGAAGATGGTT 60.036 55.000 0.00 0.00 0.00 3.67
3586 3680 3.260380 AGTCAACTGAACTGGATCTGAGG 59.740 47.826 0.00 0.00 0.00 3.86
3680 3774 5.403897 ACGCGGATAGTTCATAATTTGTG 57.596 39.130 12.47 0.00 0.00 3.33
3706 3804 1.202794 TCATCACCAAGAAGCACAGCA 60.203 47.619 0.00 0.00 0.00 4.41
3723 3821 1.549620 CTGTGGTCAGACTCTGCTCAT 59.450 52.381 0.00 0.00 43.76 2.90
3731 3829 0.036577 GCTCATGCTGTGGTCAGACT 60.037 55.000 0.00 0.00 43.76 3.24
3765 3863 0.661552 GCGTGGAGACAGCTACGATA 59.338 55.000 8.57 0.00 44.16 2.92
3768 3866 1.974249 TACGCGTGGAGACAGCTACG 61.974 60.000 24.59 0.10 44.46 3.51
3838 3936 0.616679 TTTACGGAGGAGGAGGTGGG 60.617 60.000 0.00 0.00 0.00 4.61
3839 3937 0.824759 CTTTACGGAGGAGGAGGTGG 59.175 60.000 0.00 0.00 0.00 4.61
3880 3978 8.472007 TGAACTTGGTTAGTTTCAAATATGGT 57.528 30.769 0.00 0.00 47.00 3.55
3939 4040 2.896443 GGTTCCAGAGGCCGAGAG 59.104 66.667 0.00 0.00 0.00 3.20
3945 4046 2.280628 CTATTTGTCGGTTCCAGAGGC 58.719 52.381 0.00 0.00 0.00 4.70
3955 4056 5.068234 TCTGTACTTCACCTATTTGTCGG 57.932 43.478 0.00 0.00 0.00 4.79
4001 4108 3.030291 CCTATGCAAAATAGCCACCCAA 58.970 45.455 0.00 0.00 0.00 4.12
4022 4140 6.346838 GCACTTGCTGAACAAAATGGTTTATC 60.347 38.462 0.00 0.00 37.96 1.75
4049 4168 4.576216 TCTTCATCTGATACGAGCTTCC 57.424 45.455 0.00 0.00 0.00 3.46
4051 4170 5.724328 TGTTTCTTCATCTGATACGAGCTT 58.276 37.500 0.00 0.00 0.00 3.74
4057 4176 6.417327 CGCTTCATGTTTCTTCATCTGATAC 58.583 40.000 0.00 0.00 0.00 2.24
4069 4188 1.913403 CAAATCCGCGCTTCATGTTTC 59.087 47.619 5.56 0.00 0.00 2.78
4073 4192 1.064621 CCCAAATCCGCGCTTCATG 59.935 57.895 5.56 0.00 0.00 3.07
4267 4418 5.421374 AGGAGGTAACGTAGTAAATCTTGCT 59.579 40.000 0.00 0.00 45.00 3.91
4294 4445 3.513515 GTGGGCTTTTAATCATTGGACCA 59.486 43.478 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.