Multiple sequence alignment - TraesCS4D01G058700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G058700 chr4D 100.000 4926 0 0 1 4926 34702481 34697556 0.000000e+00 9097
1 TraesCS4D01G058700 chr4A 93.359 1837 81 27 2097 3908 567677105 567678925 0.000000e+00 2678
2 TraesCS4D01G058700 chr4A 91.489 1457 51 12 1 1433 567675153 567676560 0.000000e+00 1936
3 TraesCS4D01G058700 chr4A 87.795 254 21 3 1535 1787 567676860 567677104 6.240000e-74 289
4 TraesCS4D01G058700 chr4B 92.786 1705 76 19 2197 3882 49748288 49746612 0.000000e+00 2423
5 TraesCS4D01G058700 chr4B 89.786 1498 62 27 1 1438 49750158 49748692 0.000000e+00 1834
6 TraesCS4D01G058700 chr7B 93.103 957 57 6 3976 4926 593419093 593420046 0.000000e+00 1393
7 TraesCS4D01G058700 chr6D 92.348 954 64 7 3976 4926 398167217 398166270 0.000000e+00 1349
8 TraesCS4D01G058700 chr6D 92.202 436 33 1 1659 2094 131707947 131708381 2.520000e-172 616
9 TraesCS4D01G058700 chr6D 93.506 385 23 2 1511 1894 131707570 131707953 5.530000e-159 571
10 TraesCS4D01G058700 chr6D 91.049 391 30 4 3967 4354 375846172 375845784 1.570000e-144 523
11 TraesCS4D01G058700 chr2A 91.850 957 71 5 3975 4926 700537492 700536538 0.000000e+00 1328
12 TraesCS4D01G058700 chr2A 89.623 954 86 9 3976 4926 739883478 739884421 0.000000e+00 1201
13 TraesCS4D01G058700 chr5A 89.540 956 87 9 3973 4926 338527982 338528926 0.000000e+00 1199
14 TraesCS4D01G058700 chr2D 92.566 834 53 7 4092 4921 61372028 61371200 0.000000e+00 1188
15 TraesCS4D01G058700 chr1A 89.319 955 79 10 3975 4926 539381723 539382657 0.000000e+00 1177
16 TraesCS4D01G058700 chr1A 91.974 760 58 3 3975 4732 494096520 494095762 0.000000e+00 1062
17 TraesCS4D01G058700 chr1A 87.302 252 30 2 3975 4225 522149311 522149061 2.240000e-73 287
18 TraesCS4D01G058700 chr1A 90.217 92 7 2 3255 3344 287311441 287311532 8.660000e-23 119
19 TraesCS4D01G058700 chr7A 92.497 733 53 2 4196 4926 22389313 22390045 0.000000e+00 1048
20 TraesCS4D01G058700 chr7A 92.070 227 17 1 3976 4201 22387637 22387863 7.960000e-83 318
21 TraesCS4D01G058700 chr5D 86.175 962 115 12 3976 4924 387252263 387253219 0.000000e+00 1024
22 TraesCS4D01G058700 chr5D 87.687 268 30 3 3975 4241 387288001 387287736 4.790000e-80 309
23 TraesCS4D01G058700 chr6A 92.979 584 40 1 1511 2094 170524102 170524684 0.000000e+00 850
24 TraesCS4D01G058700 chr6A 93.103 87 5 1 3254 3339 64260790 64260704 5.180000e-25 126
25 TraesCS4D01G058700 chr6B 92.123 584 38 3 1511 2094 229282091 229282666 0.000000e+00 817
26 TraesCS4D01G058700 chr6B 93.069 101 7 0 1 101 203335979 203335879 1.100000e-31 148
27 TraesCS4D01G058700 chr6B 93.478 92 5 1 3249 3339 512188595 512188504 8.600000e-28 135
28 TraesCS4D01G058700 chr6B 90.426 94 8 1 3254 3346 618944021 618944114 6.700000e-24 122
29 TraesCS4D01G058700 chr3D 93.258 89 6 0 3254 3342 237809658 237809570 1.110000e-26 132
30 TraesCS4D01G058700 chr3B 93.258 89 6 0 3254 3342 345690216 345690128 1.110000e-26 132
31 TraesCS4D01G058700 chr1D 89.247 93 8 2 3251 3343 199867575 199867485 1.120000e-21 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G058700 chr4D 34697556 34702481 4925 True 9097.000000 9097 100.0000 1 4926 1 chr4D.!!$R1 4925
1 TraesCS4D01G058700 chr4A 567675153 567678925 3772 False 1634.333333 2678 90.8810 1 3908 3 chr4A.!!$F1 3907
2 TraesCS4D01G058700 chr4B 49746612 49750158 3546 True 2128.500000 2423 91.2860 1 3882 2 chr4B.!!$R1 3881
3 TraesCS4D01G058700 chr7B 593419093 593420046 953 False 1393.000000 1393 93.1030 3976 4926 1 chr7B.!!$F1 950
4 TraesCS4D01G058700 chr6D 398166270 398167217 947 True 1349.000000 1349 92.3480 3976 4926 1 chr6D.!!$R2 950
5 TraesCS4D01G058700 chr6D 131707570 131708381 811 False 593.500000 616 92.8540 1511 2094 2 chr6D.!!$F1 583
6 TraesCS4D01G058700 chr2A 700536538 700537492 954 True 1328.000000 1328 91.8500 3975 4926 1 chr2A.!!$R1 951
7 TraesCS4D01G058700 chr2A 739883478 739884421 943 False 1201.000000 1201 89.6230 3976 4926 1 chr2A.!!$F1 950
8 TraesCS4D01G058700 chr5A 338527982 338528926 944 False 1199.000000 1199 89.5400 3973 4926 1 chr5A.!!$F1 953
9 TraesCS4D01G058700 chr2D 61371200 61372028 828 True 1188.000000 1188 92.5660 4092 4921 1 chr2D.!!$R1 829
10 TraesCS4D01G058700 chr1A 539381723 539382657 934 False 1177.000000 1177 89.3190 3975 4926 1 chr1A.!!$F2 951
11 TraesCS4D01G058700 chr1A 494095762 494096520 758 True 1062.000000 1062 91.9740 3975 4732 1 chr1A.!!$R1 757
12 TraesCS4D01G058700 chr7A 22387637 22390045 2408 False 683.000000 1048 92.2835 3976 4926 2 chr7A.!!$F1 950
13 TraesCS4D01G058700 chr5D 387252263 387253219 956 False 1024.000000 1024 86.1750 3976 4924 1 chr5D.!!$F1 948
14 TraesCS4D01G058700 chr6A 170524102 170524684 582 False 850.000000 850 92.9790 1511 2094 1 chr6A.!!$F1 583
15 TraesCS4D01G058700 chr6B 229282091 229282666 575 False 817.000000 817 92.1230 1511 2094 1 chr6B.!!$F1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
205 206 0.321564 TCCGGTCTGCATTGACAAGG 60.322 55.000 0.00 9.95 38.61 3.61 F
238 239 0.955905 TGCGCCTAACCCAAAAGAAC 59.044 50.000 4.18 0.00 0.00 3.01 F
257 258 1.321474 CCACCAGAGAAAGCAAGCAA 58.679 50.000 0.00 0.00 0.00 3.91 F
1433 1506 0.392327 GCCTCCTGCTGAAAGTCTCC 60.392 60.000 0.00 0.00 36.87 3.71 F
1434 1507 0.979665 CCTCCTGCTGAAAGTCTCCA 59.020 55.000 0.00 0.00 35.30 3.86 F
2217 2953 1.450134 TATCGTGCTTGCTGGCCAG 60.450 57.895 29.34 29.34 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1009 1040 0.031585 CAACGGTGAACGGTCTCTCA 59.968 55.000 0.33 0.0 39.00 3.27 R
1322 1388 0.032017 TAGGAGCAGGAAGAGACCCC 60.032 60.000 0.00 0.0 0.00 4.95 R
1992 2559 0.550914 TGGCCCCATACCTTGATGAC 59.449 55.000 0.00 0.0 0.00 3.06 R
3074 3813 0.958876 GGAAAGGGTCGCCGAATTGT 60.959 55.000 0.00 0.0 0.00 2.71 R
3211 3950 4.030216 TGTGTCATATGGAGCCTGTAAGA 58.970 43.478 2.13 0.0 34.07 2.10 R
3946 4709 0.107654 AGCCGCCTTATGACAGTTCC 60.108 55.000 0.00 0.0 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 5.500234 CCTTCCTGGAATCACAACATTAGA 58.500 41.667 10.03 0.00 38.35 2.10
88 89 2.937591 TCACAACATTAGACCGTCGTC 58.062 47.619 0.00 0.00 39.50 4.20
140 141 5.466058 CAGTTGCATTTTGAACTAAATGGCA 59.534 36.000 17.73 14.19 42.84 4.92
205 206 0.321564 TCCGGTCTGCATTGACAAGG 60.322 55.000 0.00 9.95 38.61 3.61
237 238 1.243902 CTGCGCCTAACCCAAAAGAA 58.756 50.000 4.18 0.00 0.00 2.52
238 239 0.955905 TGCGCCTAACCCAAAAGAAC 59.044 50.000 4.18 0.00 0.00 3.01
257 258 1.321474 CCACCAGAGAAAGCAAGCAA 58.679 50.000 0.00 0.00 0.00 3.91
303 304 9.236006 CTGTAATTGGCTAATTTATCAGGCTAT 57.764 33.333 13.63 0.00 37.64 2.97
420 421 2.352034 CGAGCGAGACTGAAAGCTAGTA 59.648 50.000 0.00 0.00 40.39 1.82
421 422 3.181509 CGAGCGAGACTGAAAGCTAGTAA 60.182 47.826 0.00 0.00 40.39 2.24
422 423 4.099380 AGCGAGACTGAAAGCTAGTAAC 57.901 45.455 0.00 0.00 38.29 2.50
423 424 3.506455 AGCGAGACTGAAAGCTAGTAACA 59.494 43.478 0.00 0.00 38.29 2.41
424 425 4.022242 AGCGAGACTGAAAGCTAGTAACAA 60.022 41.667 0.00 0.00 38.29 2.83
425 426 4.090210 GCGAGACTGAAAGCTAGTAACAAC 59.910 45.833 0.00 0.00 37.60 3.32
426 427 5.462405 CGAGACTGAAAGCTAGTAACAACT 58.538 41.667 0.00 0.00 37.60 3.16
441 450 5.995897 AGTAACAACTTAAGGCAGAAATCGT 59.004 36.000 7.53 0.00 0.00 3.73
442 451 5.767816 AACAACTTAAGGCAGAAATCGTT 57.232 34.783 7.53 0.00 0.00 3.85
658 673 4.069232 CGCCACCTCGCTTCCAGA 62.069 66.667 0.00 0.00 0.00 3.86
815 834 2.916703 TTCCGGGGGAACGAACGA 60.917 61.111 0.00 0.00 36.71 3.85
816 835 2.438951 CTTCCGGGGGAACGAACGAA 62.439 60.000 0.00 0.00 36.71 3.85
817 836 2.713927 TTCCGGGGGAACGAACGAAC 62.714 60.000 0.00 0.00 36.71 3.95
818 837 3.107661 CGGGGGAACGAACGAACG 61.108 66.667 0.14 0.00 39.31 3.95
875 895 4.462483 TGTTGGAGTTATGAGGAAAATGGC 59.538 41.667 0.00 0.00 0.00 4.40
876 896 3.278574 TGGAGTTATGAGGAAAATGGCG 58.721 45.455 0.00 0.00 0.00 5.69
877 897 2.033424 GGAGTTATGAGGAAAATGGCGC 59.967 50.000 0.00 0.00 0.00 6.53
878 898 2.945668 GAGTTATGAGGAAAATGGCGCT 59.054 45.455 7.64 0.00 0.00 5.92
879 899 4.127171 GAGTTATGAGGAAAATGGCGCTA 58.873 43.478 7.64 0.00 0.00 4.26
880 900 4.523083 AGTTATGAGGAAAATGGCGCTAA 58.477 39.130 7.64 0.00 0.00 3.09
1009 1040 4.540824 GCTCTTCGCAAAAGAGAAACATT 58.459 39.130 23.34 0.00 44.96 2.71
1322 1388 2.809601 CGCGGAAAGTGGAGGTCG 60.810 66.667 0.00 0.00 0.00 4.79
1356 1423 4.589908 TGCTCCTAGTTCATTTTTCCCTC 58.410 43.478 0.00 0.00 0.00 4.30
1398 1471 3.402110 CATTTCAAGTTTTCCCCTTGCC 58.598 45.455 0.00 0.00 39.30 4.52
1433 1506 0.392327 GCCTCCTGCTGAAAGTCTCC 60.392 60.000 0.00 0.00 36.87 3.71
1434 1507 0.979665 CCTCCTGCTGAAAGTCTCCA 59.020 55.000 0.00 0.00 35.30 3.86
1436 1509 2.026449 CCTCCTGCTGAAAGTCTCCAAT 60.026 50.000 0.00 0.00 35.30 3.16
1437 1510 3.008330 CTCCTGCTGAAAGTCTCCAATG 58.992 50.000 0.00 0.00 35.30 2.82
1446 1782 4.527816 TGAAAGTCTCCAATGGGATTTTGG 59.472 41.667 13.04 0.67 43.91 3.28
1461 1797 5.279456 GGGATTTTGGCAGTTTGAATACAGT 60.279 40.000 0.00 0.00 0.00 3.55
1462 1798 5.634859 GGATTTTGGCAGTTTGAATACAGTG 59.365 40.000 0.00 0.00 0.00 3.66
1466 1802 5.181690 TGGCAGTTTGAATACAGTGTTTC 57.818 39.130 0.00 6.19 0.00 2.78
1471 1807 6.363357 GCAGTTTGAATACAGTGTTTCATTCC 59.637 38.462 16.42 10.32 32.27 3.01
1487 1823 4.393834 TCATTCCGATTCAACCTGACAAA 58.606 39.130 0.00 0.00 0.00 2.83
1499 1835 4.529716 ACCTGACAAAGTAAAAGGGGAA 57.470 40.909 0.00 0.00 31.98 3.97
1500 1836 5.074746 ACCTGACAAAGTAAAAGGGGAAT 57.925 39.130 0.00 0.00 31.98 3.01
1501 1837 4.832823 ACCTGACAAAGTAAAAGGGGAATG 59.167 41.667 0.00 0.00 31.98 2.67
1502 1838 4.220602 CCTGACAAAGTAAAAGGGGAATGG 59.779 45.833 0.00 0.00 0.00 3.16
1503 1839 4.156477 TGACAAAGTAAAAGGGGAATGGG 58.844 43.478 0.00 0.00 0.00 4.00
1504 1840 4.140900 TGACAAAGTAAAAGGGGAATGGGA 60.141 41.667 0.00 0.00 0.00 4.37
1505 1841 4.416516 ACAAAGTAAAAGGGGAATGGGAG 58.583 43.478 0.00 0.00 0.00 4.30
1506 1842 4.107311 ACAAAGTAAAAGGGGAATGGGAGA 59.893 41.667 0.00 0.00 0.00 3.71
1507 1843 5.222547 ACAAAGTAAAAGGGGAATGGGAGAT 60.223 40.000 0.00 0.00 0.00 2.75
1508 1844 5.552430 AAGTAAAAGGGGAATGGGAGATT 57.448 39.130 0.00 0.00 0.00 2.40
1509 1845 4.871822 AGTAAAAGGGGAATGGGAGATTG 58.128 43.478 0.00 0.00 0.00 2.67
1528 1864 2.362736 TGCAGCTTGCTGAAGGAATAG 58.637 47.619 24.67 0.00 45.31 1.73
1536 1872 2.092753 TGCTGAAGGAATAGAAGCAGGG 60.093 50.000 0.00 0.00 38.88 4.45
1548 1884 8.302438 GGAATAGAAGCAGGGAATAATTTGATG 58.698 37.037 0.00 0.00 0.00 3.07
1560 1896 7.012799 GGGAATAATTTGATGTCTGAAGTCTCC 59.987 40.741 0.00 0.00 0.00 3.71
1606 1942 4.942761 AAATAATGTTGGGCTATGGCAG 57.057 40.909 2.58 0.00 40.87 4.85
1663 1999 4.397420 TGGTGCATGAAAGAACTGTGTAT 58.603 39.130 0.00 0.00 0.00 2.29
1664 2000 4.455533 TGGTGCATGAAAGAACTGTGTATC 59.544 41.667 0.00 0.00 0.00 2.24
1699 2037 2.733552 CTGTGGTCTGTTGATGTCTTCG 59.266 50.000 0.00 0.00 0.00 3.79
1701 2039 3.006859 TGTGGTCTGTTGATGTCTTCGAT 59.993 43.478 0.00 0.00 0.00 3.59
1797 2135 7.750229 AAAGCTCACAGATGTAATTTCTGAA 57.250 32.000 11.68 0.00 42.63 3.02
1830 2397 5.357878 TCAAAATCACTAGCCATGGATCAAC 59.642 40.000 18.40 0.00 0.00 3.18
1905 2472 5.276461 AGTGATCTATCGCAACATAACCA 57.724 39.130 6.31 0.00 39.68 3.67
1919 2486 6.209391 GCAACATAACCAGCTGGGATATAAAT 59.791 38.462 35.42 17.79 41.15 1.40
1962 2529 5.682234 AATTGGAATGGAAATCCCTTGAC 57.318 39.130 0.00 0.00 36.04 3.18
2038 2605 4.093556 GCCTGATACAACAGTAACTTCAGC 59.906 45.833 0.00 0.00 36.30 4.26
2039 2606 5.237815 CCTGATACAACAGTAACTTCAGCA 58.762 41.667 0.00 0.00 36.30 4.41
2072 2639 7.273381 GTGTACAATTTGCATAGAATTGGTGAC 59.727 37.037 20.78 16.28 44.70 3.67
2075 2642 4.944962 TTTGCATAGAATTGGTGACTCG 57.055 40.909 0.00 0.00 0.00 4.18
2076 2643 2.905075 TGCATAGAATTGGTGACTCGG 58.095 47.619 0.00 0.00 0.00 4.63
2094 2661 8.411683 GTGACTCGGAGAAAAATAAGTAGGATA 58.588 37.037 12.86 0.00 34.09 2.59
2095 2662 8.411683 TGACTCGGAGAAAAATAAGTAGGATAC 58.588 37.037 12.86 0.00 37.91 2.24
2096 2663 7.724287 ACTCGGAGAAAAATAAGTAGGATACC 58.276 38.462 12.86 0.00 38.34 2.73
2097 2664 7.564292 ACTCGGAGAAAAATAAGTAGGATACCT 59.436 37.037 12.86 0.00 38.34 3.08
2098 2665 8.315220 TCGGAGAAAAATAAGTAGGATACCTT 57.685 34.615 0.00 0.00 44.47 3.50
2123 2690 6.828273 TGGAATGTGATTGGTTGGAGTATTAG 59.172 38.462 0.00 0.00 0.00 1.73
2150 2717 6.877855 ACCATGATGCTAGATTGCTAGTAATG 59.122 38.462 11.07 0.00 44.84 1.90
2152 2719 8.037166 CCATGATGCTAGATTGCTAGTAATGTA 58.963 37.037 11.07 10.19 44.84 2.29
2194 2761 4.702131 AGTTTGATCCATTTAGGCAGTGTC 59.298 41.667 0.00 0.00 37.29 3.67
2217 2953 1.450134 TATCGTGCTTGCTGGCCAG 60.450 57.895 29.34 29.34 0.00 4.85
2303 3039 4.894784 TGGATGACAAAGTTGTAGAGTCC 58.105 43.478 0.00 3.78 42.43 3.85
2526 3262 5.471257 TGGTTTCACCTTTTGTGTTGTAAC 58.529 37.500 0.00 0.00 45.61 2.50
2752 3488 3.307762 GGCCTTGAGTTGAATCAGGTAGT 60.308 47.826 0.00 0.00 0.00 2.73
2760 3496 3.138884 TGAATCAGGTAGTTGCAAGCA 57.861 42.857 0.00 0.00 0.00 3.91
2984 3720 9.031360 TGTTTTATGAGTTAATCTTAGCTAGCG 57.969 33.333 9.55 0.00 0.00 4.26
3007 3746 5.856455 CGGTTTGGAGTTGAACATACAAATC 59.144 40.000 12.62 11.55 41.88 2.17
3167 3906 5.774102 TCCATGAGATGCATATCCAGATT 57.226 39.130 18.25 0.00 34.82 2.40
3171 3910 7.054751 CCATGAGATGCATATCCAGATTACAT 58.945 38.462 18.25 0.76 34.82 2.29
3172 3911 7.226918 CCATGAGATGCATATCCAGATTACATC 59.773 40.741 18.25 0.00 34.82 3.06
3195 3934 9.713740 CATCTCTCAAGTTTTTAGTTGCATATC 57.286 33.333 0.00 0.00 0.00 1.63
3211 3950 6.737720 TGCATATCTATCTGTCCAAGACTT 57.262 37.500 0.00 0.00 37.88 3.01
3264 4003 6.535508 GCAATAGGCTAATTAATACTCCCTCG 59.464 42.308 0.00 0.00 40.25 4.63
3267 4006 4.283722 AGGCTAATTAATACTCCCTCGGTG 59.716 45.833 0.00 0.00 0.00 4.94
3626 4380 1.523758 CAGGTGGGAAGAGAAAACGG 58.476 55.000 0.00 0.00 0.00 4.44
3696 4452 3.191791 GTGGTAGGCCTTAGATCGATCTC 59.808 52.174 30.49 16.27 35.59 2.75
3718 4476 8.753497 TCTCTGTAGAATGTATGTCATGTACT 57.247 34.615 0.00 0.00 36.81 2.73
3728 4486 5.817296 TGTATGTCATGTACTTTGATGCCTC 59.183 40.000 0.00 0.00 0.00 4.70
3775 4534 1.377202 GAATGGCGCACCTCCTGAA 60.377 57.895 10.83 0.00 36.63 3.02
3788 4547 3.655777 ACCTCCTGAACTTGGTATTTGGA 59.344 43.478 0.00 0.00 0.00 3.53
3801 4560 7.886970 ACTTGGTATTTGGATATCAGATGATGG 59.113 37.037 4.83 0.00 36.05 3.51
3802 4561 7.572546 TGGTATTTGGATATCAGATGATGGA 57.427 36.000 4.83 0.00 36.05 3.41
3804 4563 6.825721 GGTATTTGGATATCAGATGATGGACC 59.174 42.308 4.83 6.68 36.05 4.46
3842 4602 4.944317 AGGACTAAGAGCCTGTAAAATTGC 59.056 41.667 0.00 0.00 32.06 3.56
3858 4618 8.415553 TGTAAAATTGCCATGAAATCCATAGAG 58.584 33.333 0.00 0.00 33.31 2.43
3859 4619 7.664552 AAAATTGCCATGAAATCCATAGAGA 57.335 32.000 0.00 0.00 33.31 3.10
3874 4634 5.428457 TCCATAGAGAAATTCCAGTAAGCCA 59.572 40.000 0.00 0.00 0.00 4.75
3935 4698 5.373981 TCTGTTTAGAGAGAACGACCTTC 57.626 43.478 0.00 0.00 0.00 3.46
3936 4699 4.083431 TCTGTTTAGAGAGAACGACCTTCG 60.083 45.833 0.00 0.00 46.93 3.79
3947 4710 0.999406 CGACCTTCGTGCATACTTGG 59.001 55.000 0.00 0.00 34.72 3.61
3948 4711 1.403647 CGACCTTCGTGCATACTTGGA 60.404 52.381 0.00 0.00 34.72 3.53
3949 4712 2.695359 GACCTTCGTGCATACTTGGAA 58.305 47.619 0.00 0.00 0.00 3.53
3950 4713 2.415512 GACCTTCGTGCATACTTGGAAC 59.584 50.000 0.00 0.00 0.00 3.62
3951 4714 2.038557 ACCTTCGTGCATACTTGGAACT 59.961 45.455 0.00 0.00 0.00 3.01
3952 4715 2.416547 CCTTCGTGCATACTTGGAACTG 59.583 50.000 0.00 0.00 0.00 3.16
3953 4716 2.831685 TCGTGCATACTTGGAACTGT 57.168 45.000 0.00 0.00 0.00 3.55
3954 4717 2.683968 TCGTGCATACTTGGAACTGTC 58.316 47.619 0.00 0.00 0.00 3.51
3955 4718 2.036604 TCGTGCATACTTGGAACTGTCA 59.963 45.455 0.00 0.00 0.00 3.58
3956 4719 3.002791 CGTGCATACTTGGAACTGTCAT 58.997 45.455 0.00 0.00 0.00 3.06
3957 4720 4.081917 TCGTGCATACTTGGAACTGTCATA 60.082 41.667 0.00 0.00 0.00 2.15
3958 4721 4.629634 CGTGCATACTTGGAACTGTCATAA 59.370 41.667 0.00 0.00 0.00 1.90
3959 4722 5.220472 CGTGCATACTTGGAACTGTCATAAG 60.220 44.000 0.00 0.00 0.00 1.73
3960 4723 5.065218 GTGCATACTTGGAACTGTCATAAGG 59.935 44.000 0.00 0.00 0.00 2.69
3961 4724 4.035675 GCATACTTGGAACTGTCATAAGGC 59.964 45.833 0.00 0.00 0.00 4.35
3962 4725 2.699954 ACTTGGAACTGTCATAAGGCG 58.300 47.619 0.00 0.00 0.00 5.52
3963 4726 2.009774 CTTGGAACTGTCATAAGGCGG 58.990 52.381 0.00 0.00 0.00 6.13
3964 4727 0.392461 TGGAACTGTCATAAGGCGGC 60.392 55.000 0.00 0.00 0.00 6.53
3965 4728 0.107654 GGAACTGTCATAAGGCGGCT 60.108 55.000 5.25 5.25 0.00 5.52
3966 4729 1.291132 GAACTGTCATAAGGCGGCTC 58.709 55.000 13.70 0.00 0.00 4.70
3967 4730 0.613260 AACTGTCATAAGGCGGCTCA 59.387 50.000 13.70 0.00 0.00 4.26
3968 4731 0.833287 ACTGTCATAAGGCGGCTCAT 59.167 50.000 13.70 0.00 0.00 2.90
3969 4732 2.039418 ACTGTCATAAGGCGGCTCATA 58.961 47.619 13.70 1.56 0.00 2.15
3970 4733 2.434336 ACTGTCATAAGGCGGCTCATAA 59.566 45.455 13.70 0.00 0.00 1.90
3971 4734 3.071602 ACTGTCATAAGGCGGCTCATAAT 59.928 43.478 13.70 0.00 0.00 1.28
4128 4895 2.176045 TGACCATGTATCTGACCGTGT 58.824 47.619 0.00 0.00 0.00 4.49
4232 6473 2.342648 GGCTCGGTCGAACCAAGT 59.657 61.111 7.80 0.00 38.47 3.16
4244 6498 0.324943 AACCAAGTCGGATCCCACTG 59.675 55.000 13.23 4.10 38.63 3.66
4298 6564 1.010795 TCCTCTCTCCCTGTGGATCA 58.989 55.000 0.00 0.00 40.80 2.92
4299 6565 1.577729 TCCTCTCTCCCTGTGGATCAT 59.422 52.381 0.00 0.00 40.80 2.45
4521 6797 2.290260 CCACAAGCCATCACTAGACCAA 60.290 50.000 0.00 0.00 0.00 3.67
4607 6887 6.429521 AGGGTTAGTGTTCTTAAAGCACTA 57.570 37.500 8.48 8.48 42.60 2.74
4656 6940 8.037758 GCTTGTAGGTTAGATGATGCTATATGT 58.962 37.037 0.00 0.00 0.00 2.29
4716 7000 3.430042 AGGAAGATTTGCAGCTCAGAA 57.570 42.857 0.00 0.00 0.00 3.02
4851 7138 7.334844 ACTAGATCTGATTGACACGAACATA 57.665 36.000 5.18 0.00 0.00 2.29
4866 7153 6.417635 ACACGAACATAAAATTGCAAGAACTG 59.582 34.615 4.94 1.43 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.511600 GGGAAGGATGTGGTCGCG 60.512 66.667 0.00 0.00 0.00 5.87
80 81 3.359002 GTGGTACTGGACGACGGT 58.641 61.111 0.00 0.00 42.62 4.83
88 89 1.167851 TCCGTAGTTCGTGGTACTGG 58.832 55.000 0.00 0.00 37.94 4.00
107 108 8.042944 AGTTCAAAATGCAACTGTTTGATTTT 57.957 26.923 14.90 11.04 34.24 1.82
140 141 4.833478 AGCTCTACTCATGATTGTGGTT 57.167 40.909 0.00 0.00 0.00 3.67
205 206 1.811679 GCGCAGTAGCCTTCTGACC 60.812 63.158 0.30 0.00 37.52 4.02
217 218 0.109723 TCTTTTGGGTTAGGCGCAGT 59.890 50.000 10.83 0.00 41.18 4.40
237 238 0.183492 TGCTTGCTTTCTCTGGTGGT 59.817 50.000 0.00 0.00 0.00 4.16
238 239 1.268899 CTTGCTTGCTTTCTCTGGTGG 59.731 52.381 0.00 0.00 0.00 4.61
257 258 5.646215 ACAGTACTATTAGGATAGCCAGCT 58.354 41.667 0.00 0.00 39.09 4.24
420 421 5.298276 TGAACGATTTCTGCCTTAAGTTGTT 59.702 36.000 0.97 0.00 32.36 2.83
421 422 4.819630 TGAACGATTTCTGCCTTAAGTTGT 59.180 37.500 0.97 0.00 32.36 3.32
422 423 5.147162 GTGAACGATTTCTGCCTTAAGTTG 58.853 41.667 0.97 0.00 32.36 3.16
423 424 4.215613 GGTGAACGATTTCTGCCTTAAGTT 59.784 41.667 0.97 0.00 32.36 2.66
424 425 3.751698 GGTGAACGATTTCTGCCTTAAGT 59.248 43.478 0.97 0.00 32.36 2.24
425 426 3.751175 TGGTGAACGATTTCTGCCTTAAG 59.249 43.478 0.00 0.00 32.26 1.85
426 427 3.745799 TGGTGAACGATTTCTGCCTTAA 58.254 40.909 0.00 0.00 32.26 1.85
441 450 0.982852 ATCCCGCTCATCCTGGTGAA 60.983 55.000 0.00 0.00 0.00 3.18
442 451 1.383109 ATCCCGCTCATCCTGGTGA 60.383 57.895 0.00 0.00 0.00 4.02
642 657 2.125350 CTCTGGAAGCGAGGTGGC 60.125 66.667 0.00 0.00 0.00 5.01
818 837 1.078001 TTAAACCCTAGCGGCAGCC 60.078 57.895 4.82 0.00 46.67 4.85
875 895 2.195567 CCCATGTGGCCCATTAGCG 61.196 63.158 0.00 0.00 0.00 4.26
876 896 3.860681 CCCATGTGGCCCATTAGC 58.139 61.111 0.00 0.00 0.00 3.09
1006 1037 1.350193 CGGTGAACGGTCTCTCAATG 58.650 55.000 0.33 0.00 39.42 2.82
1009 1040 0.031585 CAACGGTGAACGGTCTCTCA 59.968 55.000 0.33 0.00 39.00 3.27
1310 1376 1.152096 AGACCCCGACCTCCACTTT 60.152 57.895 0.00 0.00 0.00 2.66
1322 1388 0.032017 TAGGAGCAGGAAGAGACCCC 60.032 60.000 0.00 0.00 0.00 4.95
1356 1423 1.135489 CAGCTGTGCTATGCAACCAAG 60.135 52.381 5.25 0.00 41.47 3.61
1433 1506 4.005487 TCAAACTGCCAAAATCCCATTG 57.995 40.909 0.00 0.00 0.00 2.82
1434 1507 4.703379 TTCAAACTGCCAAAATCCCATT 57.297 36.364 0.00 0.00 0.00 3.16
1436 1509 4.590647 TGTATTCAAACTGCCAAAATCCCA 59.409 37.500 0.00 0.00 0.00 4.37
1437 1510 5.146010 TGTATTCAAACTGCCAAAATCCC 57.854 39.130 0.00 0.00 0.00 3.85
1446 1782 6.363357 GGAATGAAACACTGTATTCAAACTGC 59.637 38.462 10.89 3.39 38.88 4.40
1461 1797 4.215399 GTCAGGTTGAATCGGAATGAAACA 59.785 41.667 0.00 0.00 0.00 2.83
1462 1798 4.215399 TGTCAGGTTGAATCGGAATGAAAC 59.785 41.667 0.00 0.00 0.00 2.78
1466 1802 4.216257 ACTTTGTCAGGTTGAATCGGAATG 59.784 41.667 0.00 0.00 0.00 2.67
1471 1807 6.142817 CCTTTTACTTTGTCAGGTTGAATCG 58.857 40.000 0.00 0.00 0.00 3.34
1487 1823 4.871822 CAATCTCCCATTCCCCTTTTACT 58.128 43.478 0.00 0.00 0.00 2.24
1499 1835 2.501492 GCAAGCTGCAATCTCCCAT 58.499 52.632 1.02 0.00 44.26 4.00
1500 1836 4.007457 GCAAGCTGCAATCTCCCA 57.993 55.556 1.02 0.00 44.26 4.37
1509 1845 2.636830 TCTATTCCTTCAGCAAGCTGC 58.363 47.619 16.89 0.00 45.46 5.25
1528 1864 6.319658 TCAGACATCAAATTATTCCCTGCTTC 59.680 38.462 0.00 0.00 0.00 3.86
1536 1872 8.498054 TGGAGACTTCAGACATCAAATTATTC 57.502 34.615 0.00 0.00 0.00 1.75
1548 1884 5.934625 ACATAACACATTGGAGACTTCAGAC 59.065 40.000 0.00 0.00 0.00 3.51
1560 1896 9.729023 TTTTCTGTTTCTGTACATAACACATTG 57.271 29.630 15.74 9.25 33.45 2.82
1593 1929 1.078497 CACGTCTGCCATAGCCCAA 60.078 57.895 0.00 0.00 38.69 4.12
1606 1942 5.912396 TGTCATTCTTGTTAAAATGCACGTC 59.088 36.000 0.00 0.00 33.76 4.34
1642 1978 4.697352 AGATACACAGTTCTTTCATGCACC 59.303 41.667 0.00 0.00 0.00 5.01
1739 2077 5.375417 TGTCTTGTGCAGAAAATATGTGG 57.625 39.130 0.00 0.00 31.28 4.17
1797 2135 5.769662 TGGCTAGTGATTTTGAAGTGACATT 59.230 36.000 0.00 0.00 0.00 2.71
1811 2149 2.435805 ACGTTGATCCATGGCTAGTGAT 59.564 45.455 6.96 0.00 0.00 3.06
1877 2444 8.818057 GTTATGTTGCGATAGATCACTTTAGTT 58.182 33.333 0.00 0.00 39.76 2.24
1887 2454 4.060900 CAGCTGGTTATGTTGCGATAGAT 58.939 43.478 5.57 0.00 39.76 1.98
1894 2461 1.767759 ATCCCAGCTGGTTATGTTGC 58.232 50.000 30.63 0.00 34.77 4.17
1955 2522 7.967908 AGTTCCTGTATATTATGAGTCAAGGG 58.032 38.462 0.00 0.00 0.00 3.95
1987 2554 3.131046 GCCCCATACCTTGATGACAAAAG 59.869 47.826 0.00 0.00 35.49 2.27
1992 2559 0.550914 TGGCCCCATACCTTGATGAC 59.449 55.000 0.00 0.00 0.00 3.06
2024 2591 5.928839 CACACTCTATGCTGAAGTTACTGTT 59.071 40.000 0.00 0.00 0.00 3.16
2038 2605 8.424274 TCTATGCAAATTGTACACACTCTATG 57.576 34.615 0.00 0.00 0.00 2.23
2039 2606 9.618890 ATTCTATGCAAATTGTACACACTCTAT 57.381 29.630 0.00 0.00 0.00 1.98
2072 2639 7.953752 AGGTATCCTACTTATTTTTCTCCGAG 58.046 38.462 0.00 0.00 28.47 4.63
2075 2642 8.491958 TCCAAGGTATCCTACTTATTTTTCTCC 58.508 37.037 0.00 0.00 31.13 3.71
2076 2643 9.901172 TTCCAAGGTATCCTACTTATTTTTCTC 57.099 33.333 0.00 0.00 31.13 2.87
2094 2661 2.899256 CCAACCAATCACATTCCAAGGT 59.101 45.455 0.00 0.00 0.00 3.50
2095 2662 3.164268 TCCAACCAATCACATTCCAAGG 58.836 45.455 0.00 0.00 0.00 3.61
2096 2663 3.828451 ACTCCAACCAATCACATTCCAAG 59.172 43.478 0.00 0.00 0.00 3.61
2097 2664 3.843422 ACTCCAACCAATCACATTCCAA 58.157 40.909 0.00 0.00 0.00 3.53
2098 2665 3.524095 ACTCCAACCAATCACATTCCA 57.476 42.857 0.00 0.00 0.00 3.53
2123 2690 5.788450 ACTAGCAATCTAGCATCATGGTAC 58.212 41.667 0.00 0.00 44.83 3.34
2152 2719 9.777297 ATCAAACTAACAAACCAAGCAATTAAT 57.223 25.926 0.00 0.00 0.00 1.40
2168 2735 6.151144 ACACTGCCTAAATGGATCAAACTAAC 59.849 38.462 0.00 0.00 38.35 2.34
2172 2739 4.142381 GGACACTGCCTAAATGGATCAAAC 60.142 45.833 0.00 0.00 38.35 2.93
2194 2761 1.858091 CCAGCAAGCACGATACTAGG 58.142 55.000 0.00 0.00 0.00 3.02
2217 2953 4.156556 TGCAGAGTGAAGGTTGAATATTGC 59.843 41.667 0.00 0.00 0.00 3.56
2224 2960 3.554934 ACAAATGCAGAGTGAAGGTTGA 58.445 40.909 0.00 0.00 0.00 3.18
2526 3262 4.278170 TGCCTGAACACATTTCACTAAAGG 59.722 41.667 0.00 0.00 32.69 3.11
2573 3309 4.826556 ACTGCTTCAGAGTGTATTCCTTC 58.173 43.478 0.29 0.00 35.18 3.46
2752 3488 9.465985 CAACAATAATACATCATATGCTTGCAA 57.534 29.630 0.00 0.00 0.00 4.08
2983 3719 4.822036 TTGTATGTTCAACTCCAAACCG 57.178 40.909 0.00 0.00 0.00 4.44
2984 3720 6.981722 AGATTTGTATGTTCAACTCCAAACC 58.018 36.000 3.11 0.00 30.68 3.27
3023 3762 5.148651 TGGAACTTCTCCTAAAGCAGTAC 57.851 43.478 0.00 0.00 45.64 2.73
3056 3795 8.665685 CCGAATTGTAAACTAGTGCTCTTTTAT 58.334 33.333 0.00 0.00 0.00 1.40
3074 3813 0.958876 GGAAAGGGTCGCCGAATTGT 60.959 55.000 0.00 0.00 0.00 2.71
3167 3906 8.621532 ATGCAACTAAAAACTTGAGAGATGTA 57.378 30.769 0.00 0.00 0.00 2.29
3195 3934 6.568869 CCTGTAAGAAGTCTTGGACAGATAG 58.431 44.000 19.05 5.49 41.57 2.08
3211 3950 4.030216 TGTGTCATATGGAGCCTGTAAGA 58.970 43.478 2.13 0.00 34.07 2.10
3267 4006 9.016623 GGGCATAAAAACGTCTTATATTTTGTC 57.983 33.333 4.13 0.00 0.00 3.18
3472 4226 4.377839 TGTCAGCCAAACGATTTTCAAA 57.622 36.364 0.00 0.00 0.00 2.69
3696 4452 9.586435 TCAAAGTACATGACATACATTCTACAG 57.414 33.333 0.00 0.00 37.07 2.74
3718 4476 1.409241 GGCTGATCCAGAGGCATCAAA 60.409 52.381 0.00 0.00 36.06 2.69
3775 4534 7.886970 CCATCATCTGATATCCAAATACCAAGT 59.113 37.037 0.00 0.00 32.63 3.16
3788 4547 3.242867 ACACCGGTCCATCATCTGATAT 58.757 45.455 2.59 0.00 32.63 1.63
3827 4587 4.454728 TTCATGGCAATTTTACAGGCTC 57.545 40.909 0.00 0.00 0.00 4.70
3828 4588 4.888326 TTTCATGGCAATTTTACAGGCT 57.112 36.364 0.00 0.00 0.00 4.58
3842 4602 7.504911 ACTGGAATTTCTCTATGGATTTCATGG 59.495 37.037 0.00 0.00 37.30 3.66
3858 4618 6.038714 CCAAGTAGATGGCTTACTGGAATTTC 59.961 42.308 0.00 0.00 32.78 2.17
3859 4619 5.888161 CCAAGTAGATGGCTTACTGGAATTT 59.112 40.000 0.00 0.00 32.78 1.82
3874 4634 8.571336 CATTTCAGTTCAAAGTTCCAAGTAGAT 58.429 33.333 0.00 0.00 0.00 1.98
3908 4671 5.984323 GGTCGTTCTCTCTAAACAGAGTTTT 59.016 40.000 0.03 0.00 40.87 2.43
3909 4672 5.302313 AGGTCGTTCTCTCTAAACAGAGTTT 59.698 40.000 1.84 0.51 40.87 2.66
3910 4673 4.828387 AGGTCGTTCTCTCTAAACAGAGTT 59.172 41.667 1.84 0.00 40.87 3.01
3911 4674 4.400120 AGGTCGTTCTCTCTAAACAGAGT 58.600 43.478 1.84 0.00 40.87 3.24
3912 4675 5.379732 AAGGTCGTTCTCTCTAAACAGAG 57.620 43.478 0.00 0.00 41.35 3.35
3913 4676 4.083431 CGAAGGTCGTTCTCTCTAAACAGA 60.083 45.833 3.93 0.00 34.72 3.41
3914 4677 4.159857 CGAAGGTCGTTCTCTCTAAACAG 58.840 47.826 3.93 0.00 34.72 3.16
3915 4678 4.156664 CGAAGGTCGTTCTCTCTAAACA 57.843 45.455 3.93 0.00 34.72 2.83
3928 4691 0.999406 CCAAGTATGCACGAAGGTCG 59.001 55.000 0.00 0.00 46.93 4.79
3929 4692 2.380084 TCCAAGTATGCACGAAGGTC 57.620 50.000 0.00 0.00 0.00 3.85
3930 4693 2.038557 AGTTCCAAGTATGCACGAAGGT 59.961 45.455 0.00 0.00 0.00 3.50
3931 4694 2.416547 CAGTTCCAAGTATGCACGAAGG 59.583 50.000 0.00 0.00 0.00 3.46
3932 4695 3.067106 ACAGTTCCAAGTATGCACGAAG 58.933 45.455 0.00 0.00 0.00 3.79
3933 4696 3.064207 GACAGTTCCAAGTATGCACGAA 58.936 45.455 0.00 0.00 0.00 3.85
3934 4697 2.036604 TGACAGTTCCAAGTATGCACGA 59.963 45.455 0.00 0.00 0.00 4.35
3935 4698 2.412870 TGACAGTTCCAAGTATGCACG 58.587 47.619 0.00 0.00 0.00 5.34
3936 4699 5.065218 CCTTATGACAGTTCCAAGTATGCAC 59.935 44.000 0.00 0.00 0.00 4.57
3937 4700 5.185454 CCTTATGACAGTTCCAAGTATGCA 58.815 41.667 0.00 0.00 0.00 3.96
3938 4701 4.035675 GCCTTATGACAGTTCCAAGTATGC 59.964 45.833 0.00 0.00 0.00 3.14
3939 4702 4.271049 CGCCTTATGACAGTTCCAAGTATG 59.729 45.833 0.00 0.00 0.00 2.39
3940 4703 4.442706 CGCCTTATGACAGTTCCAAGTAT 58.557 43.478 0.00 0.00 0.00 2.12
3941 4704 3.369052 CCGCCTTATGACAGTTCCAAGTA 60.369 47.826 0.00 0.00 0.00 2.24
3942 4705 2.615493 CCGCCTTATGACAGTTCCAAGT 60.615 50.000 0.00 0.00 0.00 3.16
3943 4706 2.009774 CCGCCTTATGACAGTTCCAAG 58.990 52.381 0.00 0.00 0.00 3.61
3944 4707 1.948611 GCCGCCTTATGACAGTTCCAA 60.949 52.381 0.00 0.00 0.00 3.53
3945 4708 0.392461 GCCGCCTTATGACAGTTCCA 60.392 55.000 0.00 0.00 0.00 3.53
3946 4709 0.107654 AGCCGCCTTATGACAGTTCC 60.108 55.000 0.00 0.00 0.00 3.62
3947 4710 1.291132 GAGCCGCCTTATGACAGTTC 58.709 55.000 0.00 0.00 0.00 3.01
3948 4711 0.613260 TGAGCCGCCTTATGACAGTT 59.387 50.000 0.00 0.00 0.00 3.16
3949 4712 0.833287 ATGAGCCGCCTTATGACAGT 59.167 50.000 0.00 0.00 0.00 3.55
3950 4713 2.820059 TATGAGCCGCCTTATGACAG 57.180 50.000 0.00 0.00 0.00 3.51
3951 4714 3.324846 AGATTATGAGCCGCCTTATGACA 59.675 43.478 0.00 0.00 0.00 3.58
3952 4715 3.931578 AGATTATGAGCCGCCTTATGAC 58.068 45.455 0.00 0.00 0.00 3.06
3953 4716 5.016831 TCTAGATTATGAGCCGCCTTATGA 58.983 41.667 0.00 0.00 0.00 2.15
3954 4717 5.105554 ACTCTAGATTATGAGCCGCCTTATG 60.106 44.000 0.00 0.00 33.92 1.90
3955 4718 5.020132 ACTCTAGATTATGAGCCGCCTTAT 58.980 41.667 0.00 0.00 33.92 1.73
3956 4719 4.408276 ACTCTAGATTATGAGCCGCCTTA 58.592 43.478 0.00 0.00 33.92 2.69
3957 4720 3.235200 ACTCTAGATTATGAGCCGCCTT 58.765 45.455 0.00 0.00 33.92 4.35
3958 4721 2.883026 ACTCTAGATTATGAGCCGCCT 58.117 47.619 0.00 0.00 33.92 5.52
3959 4722 3.669251 AACTCTAGATTATGAGCCGCC 57.331 47.619 0.00 0.00 33.92 6.13
3960 4723 6.868864 TCAATTAACTCTAGATTATGAGCCGC 59.131 38.462 0.00 0.00 33.92 6.53
3961 4724 8.818141 TTCAATTAACTCTAGATTATGAGCCG 57.182 34.615 0.00 0.00 33.92 5.52
3962 4725 9.213799 CCTTCAATTAACTCTAGATTATGAGCC 57.786 37.037 0.00 0.00 33.92 4.70
3963 4726 9.988815 TCCTTCAATTAACTCTAGATTATGAGC 57.011 33.333 0.00 0.00 33.92 4.26
3970 4733 9.661954 TGGTATCTCCTTCAATTAACTCTAGAT 57.338 33.333 0.00 0.00 37.07 1.98
3971 4734 8.915036 GTGGTATCTCCTTCAATTAACTCTAGA 58.085 37.037 0.00 0.00 37.07 2.43
4244 6498 0.976590 AGGAAGGCTAGGGTTCGTCC 60.977 60.000 0.00 0.00 0.00 4.79
4298 6564 4.996434 GCCGCAGCCATCGCCTAT 62.996 66.667 0.00 0.00 34.57 2.57
4497 6773 3.055385 GGTCTAGTGATGGCTTGTGGTTA 60.055 47.826 0.00 0.00 0.00 2.85
4521 6797 0.107508 CAACACTCCATCCGCTCCAT 60.108 55.000 0.00 0.00 0.00 3.41
4624 6908 5.435686 TCATCTAACCTACAAGCCACAAT 57.564 39.130 0.00 0.00 0.00 2.71
4656 6940 6.094464 CAGCATCAAAGTGAATCCTAACATCA 59.906 38.462 0.00 0.00 0.00 3.07
4716 7000 4.697352 GCATACAGGTTCAGAAATGTGACT 59.303 41.667 11.07 0.00 0.00 3.41
4799 7083 1.001746 CTCTCTCAACTCCTGCTGCAA 59.998 52.381 3.02 0.00 0.00 4.08
4851 7138 5.663456 TGCTTCTTCAGTTCTTGCAATTTT 58.337 33.333 0.00 0.00 0.00 1.82
4866 7153 3.668447 TGAATCCTCACACTGCTTCTTC 58.332 45.455 0.00 0.00 0.00 2.87
4877 7164 8.734386 ACAAATTCAGAACTAATGAATCCTCAC 58.266 33.333 1.96 0.00 44.57 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.