Multiple sequence alignment - TraesCS4D01G057600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G057600 chr4D 100.000 5737 0 0 1 5737 32495738 32501474 0.000000e+00 10595.0
1 TraesCS4D01G057600 chr4D 88.811 143 13 3 1572 1714 32497233 32497372 7.640000e-39 172.0
2 TraesCS4D01G057600 chr4D 88.811 143 13 3 1496 1635 32497309 32497451 7.640000e-39 172.0
3 TraesCS4D01G057600 chr4A 93.097 3332 131 36 696 3958 569883932 569880631 0.000000e+00 4787.0
4 TraesCS4D01G057600 chr4A 83.676 778 68 16 4099 4839 569880608 569879853 0.000000e+00 678.0
5 TraesCS4D01G057600 chr4A 82.667 600 44 29 5171 5736 569879548 569878975 1.450000e-130 477.0
6 TraesCS4D01G057600 chr4A 83.645 428 50 8 168 591 569885091 569884680 9.020000e-103 385.0
7 TraesCS4D01G057600 chr4A 87.317 205 7 11 4880 5077 569879758 569879566 3.480000e-52 217.0
8 TraesCS4D01G057600 chr4B 91.366 2386 104 32 2859 5189 47499731 47502069 0.000000e+00 3171.0
9 TraesCS4D01G057600 chr4B 92.591 2038 97 21 860 2855 47497658 47499683 0.000000e+00 2878.0
10 TraesCS4D01G057600 chr4B 90.076 393 15 10 5335 5712 47502106 47502489 6.680000e-134 488.0
11 TraesCS4D01G057600 chr4B 87.821 312 33 5 79 389 47494451 47494758 1.520000e-95 361.0
12 TraesCS4D01G057600 chr4B 89.326 178 15 2 562 735 47497361 47497538 2.690000e-53 220.0
13 TraesCS4D01G057600 chr4B 84.615 143 14 4 1496 1635 47498407 47498544 1.000000e-27 135.0
14 TraesCS4D01G057600 chr4B 98.485 66 1 0 749 814 47497580 47497645 3.630000e-22 117.0
15 TraesCS4D01G057600 chr4B 85.714 84 11 1 375 458 47495658 47495740 2.850000e-13 87.9
16 TraesCS4D01G057600 chr7D 81.924 946 114 32 3099 4012 411026625 411025705 0.000000e+00 747.0
17 TraesCS4D01G057600 chr7D 85.092 597 79 7 2116 2707 411027671 411027080 8.230000e-168 601.0
18 TraesCS4D01G057600 chr7D 79.042 501 68 22 4248 4741 411025524 411025054 5.580000e-80 309.0
19 TraesCS4D01G057600 chr7A 82.011 895 112 30 3099 3980 470888000 470888858 0.000000e+00 715.0
20 TraesCS4D01G057600 chr7A 84.314 663 88 13 2116 2770 470886952 470887606 8.110000e-178 634.0
21 TraesCS4D01G057600 chr7A 81.892 370 48 11 2345 2702 628917262 628917624 1.560000e-75 294.0
22 TraesCS4D01G057600 chr7A 89.820 167 17 0 3099 3265 628918080 628918246 1.250000e-51 215.0
23 TraesCS4D01G057600 chr2D 82.258 372 49 11 2345 2702 603592992 603592624 7.220000e-79 305.0
24 TraesCS4D01G057600 chr5D 81.989 372 50 11 2345 2702 297158346 297158714 3.360000e-77 300.0
25 TraesCS4D01G057600 chr5D 86.885 183 21 2 3099 3281 297159166 297159345 9.750000e-48 202.0
26 TraesCS4D01G057600 chr5A 80.376 372 56 13 2345 2702 534807964 534808332 3.410000e-67 267.0
27 TraesCS4D01G057600 chr5A 88.235 170 20 0 3099 3268 534808782 534808951 2.710000e-48 204.0
28 TraesCS4D01G057600 chr7B 81.848 303 39 9 2345 2633 713567974 713568274 2.070000e-59 241.0
29 TraesCS4D01G057600 chr7B 85.792 183 23 2 3099 3281 125856756 125856577 2.110000e-44 191.0
30 TraesCS4D01G057600 chr7B 87.059 170 17 4 3113 3281 713568776 713568941 2.730000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G057600 chr4D 32495738 32501474 5736 False 10595.000000 10595 100.000000 1 5737 1 chr4D.!!$F1 5736
1 TraesCS4D01G057600 chr4A 569878975 569885091 6116 True 1308.800000 4787 86.080400 168 5736 5 chr4A.!!$R1 5568
2 TraesCS4D01G057600 chr4B 47494451 47502489 8038 False 932.237500 3171 89.999250 79 5712 8 chr4B.!!$F1 5633
3 TraesCS4D01G057600 chr7D 411025054 411027671 2617 True 552.333333 747 82.019333 2116 4741 3 chr7D.!!$R1 2625
4 TraesCS4D01G057600 chr7A 470886952 470888858 1906 False 674.500000 715 83.162500 2116 3980 2 chr7A.!!$F1 1864
5 TraesCS4D01G057600 chr7A 628917262 628918246 984 False 254.500000 294 85.856000 2345 3265 2 chr7A.!!$F2 920
6 TraesCS4D01G057600 chr5D 297158346 297159345 999 False 251.000000 300 84.437000 2345 3281 2 chr5D.!!$F1 936
7 TraesCS4D01G057600 chr5A 534807964 534808951 987 False 235.500000 267 84.305500 2345 3268 2 chr5A.!!$F1 923
8 TraesCS4D01G057600 chr7B 713567974 713568941 967 False 214.000000 241 84.453500 2345 3281 2 chr7B.!!$F1 936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.249868 CTTGGCCACTGTCAGTTCGA 60.250 55.000 3.88 0.00 0.00 3.71 F
88 89 0.326143 TAGTCCATGTGCCTGGCCTA 60.326 55.000 17.53 5.22 36.16 3.93 F
513 1503 0.461961 AAGATACTCTGTCCCTGCGC 59.538 55.000 0.00 0.00 0.00 6.09 F
1154 4314 0.883833 GGGACCTGCAAGTTCATGTG 59.116 55.000 0.00 0.00 0.00 3.21 F
1156 4316 1.267806 GGACCTGCAAGTTCATGTGTG 59.732 52.381 0.00 0.00 0.00 3.82 F
2835 6109 1.277580 CCCCCACTCTCAGAGCCATT 61.278 60.000 0.00 0.00 32.04 3.16 F
3796 7214 1.173913 CCAGGTCCGGGAATTTGAAC 58.826 55.000 0.90 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1379 4560 0.242017 AGCCAAGTTTCAAGCATCGC 59.758 50.000 0.00 0.00 0.00 4.58 R
1749 4997 0.245539 CAGCAGGTCCCATTTTGCAG 59.754 55.000 3.16 0.00 38.97 4.41 R
1918 5167 0.387367 CTCCGTTCACGAGTGGACTG 60.387 60.000 12.30 6.44 43.02 3.51 R
2810 6076 1.005215 CTCTGAGAGTGGGGGCAAATT 59.995 52.381 0.16 0.00 0.00 1.82 R
2951 6311 2.872245 TGAACAGAGAAAGAGCAAACGG 59.128 45.455 0.00 0.00 0.00 4.44 R
4530 8078 0.739462 CCATGCTCGTGCGGACTTTA 60.739 55.000 5.27 0.00 43.34 1.85 R
5201 8852 0.035317 AGTGAGGTGAATGCGCTTGA 59.965 50.000 9.73 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.713826 AACCTGAGGAAATTTAGCGGA 57.286 42.857 4.99 0.00 0.00 5.54
21 22 3.268023 ACCTGAGGAAATTTAGCGGAG 57.732 47.619 4.99 0.00 0.00 4.63
22 23 2.572104 ACCTGAGGAAATTTAGCGGAGT 59.428 45.455 4.99 0.00 0.00 3.85
23 24 3.198872 CCTGAGGAAATTTAGCGGAGTC 58.801 50.000 0.00 0.00 0.00 3.36
24 25 2.860735 CTGAGGAAATTTAGCGGAGTCG 59.139 50.000 0.00 0.00 39.81 4.18
25 26 2.494471 TGAGGAAATTTAGCGGAGTCGA 59.506 45.455 0.00 0.00 39.00 4.20
26 27 3.117046 GAGGAAATTTAGCGGAGTCGAG 58.883 50.000 0.00 0.00 39.00 4.04
27 28 2.758979 AGGAAATTTAGCGGAGTCGAGA 59.241 45.455 0.00 0.00 39.00 4.04
28 29 2.858941 GGAAATTTAGCGGAGTCGAGAC 59.141 50.000 0.00 0.00 39.00 3.36
29 30 3.508762 GAAATTTAGCGGAGTCGAGACA 58.491 45.455 5.99 0.00 39.00 3.41
30 31 2.853731 ATTTAGCGGAGTCGAGACAG 57.146 50.000 5.99 0.00 39.00 3.51
31 32 1.531423 TTTAGCGGAGTCGAGACAGT 58.469 50.000 5.99 0.00 39.00 3.55
32 33 1.085091 TTAGCGGAGTCGAGACAGTC 58.915 55.000 5.99 0.00 39.00 3.51
33 34 0.743701 TAGCGGAGTCGAGACAGTCC 60.744 60.000 5.99 4.02 39.00 3.85
34 35 2.041686 GCGGAGTCGAGACAGTCCT 61.042 63.158 5.99 0.00 39.00 3.85
35 36 1.797441 CGGAGTCGAGACAGTCCTG 59.203 63.158 5.99 0.00 39.00 3.86
36 37 1.509004 GGAGTCGAGACAGTCCTGC 59.491 63.158 5.99 0.00 0.00 4.85
37 38 0.963355 GGAGTCGAGACAGTCCTGCT 60.963 60.000 5.99 0.00 0.00 4.24
38 39 0.885196 GAGTCGAGACAGTCCTGCTT 59.115 55.000 5.99 0.00 0.00 3.91
39 40 0.600557 AGTCGAGACAGTCCTGCTTG 59.399 55.000 5.99 0.00 0.00 4.01
40 41 0.389166 GTCGAGACAGTCCTGCTTGG 60.389 60.000 0.00 0.00 37.10 3.61
41 42 1.739562 CGAGACAGTCCTGCTTGGC 60.740 63.158 0.00 0.00 35.26 4.52
42 43 1.376553 GAGACAGTCCTGCTTGGCC 60.377 63.158 0.00 0.00 35.26 5.36
43 44 2.116983 GAGACAGTCCTGCTTGGCCA 62.117 60.000 0.00 0.00 35.26 5.36
44 45 1.968540 GACAGTCCTGCTTGGCCAC 60.969 63.158 3.88 0.00 35.26 5.01
45 46 2.403132 GACAGTCCTGCTTGGCCACT 62.403 60.000 3.88 0.00 35.26 4.00
46 47 1.970114 CAGTCCTGCTTGGCCACTG 60.970 63.158 3.88 3.42 35.31 3.66
47 48 2.113986 GTCCTGCTTGGCCACTGT 59.886 61.111 3.88 0.00 35.26 3.55
48 49 1.968540 GTCCTGCTTGGCCACTGTC 60.969 63.158 3.88 0.00 35.26 3.51
49 50 2.113774 CCTGCTTGGCCACTGTCA 59.886 61.111 3.88 0.00 0.00 3.58
50 51 1.970114 CCTGCTTGGCCACTGTCAG 60.970 63.158 3.88 10.29 0.00 3.51
51 52 1.228063 CTGCTTGGCCACTGTCAGT 60.228 57.895 3.88 0.00 0.00 3.41
52 53 0.820891 CTGCTTGGCCACTGTCAGTT 60.821 55.000 3.88 0.00 0.00 3.16
53 54 0.819259 TGCTTGGCCACTGTCAGTTC 60.819 55.000 3.88 0.00 0.00 3.01
54 55 1.845809 GCTTGGCCACTGTCAGTTCG 61.846 60.000 3.88 0.00 0.00 3.95
55 56 0.249868 CTTGGCCACTGTCAGTTCGA 60.250 55.000 3.88 0.00 0.00 3.71
56 57 0.531974 TTGGCCACTGTCAGTTCGAC 60.532 55.000 3.88 0.00 45.61 4.20
57 58 1.367840 GGCCACTGTCAGTTCGACT 59.632 57.895 1.67 0.00 45.60 4.18
58 59 0.601558 GGCCACTGTCAGTTCGACTA 59.398 55.000 1.67 0.00 45.60 2.59
59 60 1.669211 GGCCACTGTCAGTTCGACTAC 60.669 57.143 1.67 0.00 45.60 2.73
60 61 1.000607 GCCACTGTCAGTTCGACTACA 60.001 52.381 1.67 0.00 45.60 2.74
61 62 2.352814 GCCACTGTCAGTTCGACTACAT 60.353 50.000 1.67 0.00 45.60 2.29
62 63 3.245797 CCACTGTCAGTTCGACTACATG 58.754 50.000 1.67 0.00 45.60 3.21
63 64 3.305403 CCACTGTCAGTTCGACTACATGT 60.305 47.826 1.67 2.69 45.60 3.21
64 65 4.299155 CACTGTCAGTTCGACTACATGTT 58.701 43.478 2.30 0.00 45.60 2.71
65 66 4.383052 CACTGTCAGTTCGACTACATGTTC 59.617 45.833 2.30 0.00 45.60 3.18
66 67 4.278669 ACTGTCAGTTCGACTACATGTTCT 59.721 41.667 2.30 0.00 45.60 3.01
67 68 5.196341 TGTCAGTTCGACTACATGTTCTT 57.804 39.130 2.30 0.00 45.60 2.52
68 69 6.016527 ACTGTCAGTTCGACTACATGTTCTTA 60.017 38.462 2.30 0.00 45.60 2.10
69 70 6.920817 TGTCAGTTCGACTACATGTTCTTAT 58.079 36.000 2.30 0.00 45.60 1.73
70 71 8.047413 TGTCAGTTCGACTACATGTTCTTATA 57.953 34.615 2.30 0.00 45.60 0.98
71 72 8.182227 TGTCAGTTCGACTACATGTTCTTATAG 58.818 37.037 2.30 0.00 45.60 1.31
72 73 8.182881 GTCAGTTCGACTACATGTTCTTATAGT 58.817 37.037 2.30 0.00 41.81 2.12
73 74 8.396390 TCAGTTCGACTACATGTTCTTATAGTC 58.604 37.037 2.30 8.89 40.01 2.59
74 75 7.644551 CAGTTCGACTACATGTTCTTATAGTCC 59.355 40.741 15.30 5.25 40.20 3.85
75 76 7.338703 AGTTCGACTACATGTTCTTATAGTCCA 59.661 37.037 15.30 3.69 40.20 4.02
76 77 7.818997 TCGACTACATGTTCTTATAGTCCAT 57.181 36.000 15.30 0.00 40.20 3.41
77 78 7.649057 TCGACTACATGTTCTTATAGTCCATG 58.351 38.462 15.30 5.40 40.20 3.66
78 79 7.284716 TCGACTACATGTTCTTATAGTCCATGT 59.715 37.037 15.30 8.43 45.71 3.21
79 80 7.379797 CGACTACATGTTCTTATAGTCCATGTG 59.620 40.741 15.30 6.46 44.15 3.21
80 81 6.986817 ACTACATGTTCTTATAGTCCATGTGC 59.013 38.462 2.30 0.00 44.15 4.57
81 82 5.126067 ACATGTTCTTATAGTCCATGTGCC 58.874 41.667 0.00 0.00 43.16 5.01
82 83 5.104360 ACATGTTCTTATAGTCCATGTGCCT 60.104 40.000 0.00 0.00 43.16 4.75
83 84 4.769688 TGTTCTTATAGTCCATGTGCCTG 58.230 43.478 0.00 0.00 0.00 4.85
84 85 4.130118 GTTCTTATAGTCCATGTGCCTGG 58.870 47.826 0.00 0.00 37.66 4.45
85 86 2.104792 TCTTATAGTCCATGTGCCTGGC 59.895 50.000 12.87 12.87 36.16 4.85
86 87 0.764890 TATAGTCCATGTGCCTGGCC 59.235 55.000 17.53 8.23 36.16 5.36
87 88 0.990282 ATAGTCCATGTGCCTGGCCT 60.990 55.000 17.53 6.41 36.16 5.19
88 89 0.326143 TAGTCCATGTGCCTGGCCTA 60.326 55.000 17.53 5.22 36.16 3.93
89 90 1.452108 GTCCATGTGCCTGGCCTAC 60.452 63.158 17.53 9.32 36.16 3.18
90 91 2.124151 CCATGTGCCTGGCCTACC 60.124 66.667 17.53 1.94 0.00 3.18
91 92 2.514592 CATGTGCCTGGCCTACCG 60.515 66.667 17.53 0.00 39.70 4.02
117 118 2.290323 GGCCGGATTTGATGCCTAGTAT 60.290 50.000 5.05 0.00 40.77 2.12
130 131 6.652062 TGATGCCTAGTATTTGATGCATACAG 59.348 38.462 0.00 0.00 39.36 2.74
137 138 7.268199 AGTATTTGATGCATACAGTTGGATG 57.732 36.000 0.00 0.00 30.55 3.51
140 141 4.492494 TGATGCATACAGTTGGATGAGT 57.508 40.909 8.51 0.00 0.00 3.41
142 143 3.979101 TGCATACAGTTGGATGAGTGA 57.021 42.857 8.51 0.00 0.00 3.41
143 144 3.599343 TGCATACAGTTGGATGAGTGAC 58.401 45.455 8.51 0.00 0.00 3.67
148 149 2.564947 ACAGTTGGATGAGTGACTCTCC 59.435 50.000 14.42 16.78 42.12 3.71
149 150 2.830923 CAGTTGGATGAGTGACTCTCCT 59.169 50.000 22.61 7.38 42.12 3.69
150 151 4.019858 CAGTTGGATGAGTGACTCTCCTA 58.980 47.826 22.61 16.45 42.12 2.94
155 156 2.581216 TGAGTGACTCTCCTACCGTT 57.419 50.000 14.42 0.00 42.12 4.44
161 162 2.696707 TGACTCTCCTACCGTTGTTGTT 59.303 45.455 0.00 0.00 0.00 2.83
244 245 4.407296 TGGAGTTGCCCTAAACATTTTGTT 59.593 37.500 0.00 0.00 37.87 2.83
246 247 5.452636 GGAGTTGCCCTAAACATTTTGTTGA 60.453 40.000 0.00 0.00 40.14 3.18
310 311 7.606456 TCTCACTTTGTACACACTTTTCTTTCT 59.394 33.333 0.00 0.00 0.00 2.52
389 390 6.552445 AGTAGATTAAAGTGTGCCAGAGAT 57.448 37.500 0.00 0.00 0.00 2.75
390 391 7.661536 AGTAGATTAAAGTGTGCCAGAGATA 57.338 36.000 0.00 0.00 0.00 1.98
392 393 9.368416 AGTAGATTAAAGTGTGCCAGAGATATA 57.632 33.333 0.00 0.00 0.00 0.86
393 394 9.982651 GTAGATTAAAGTGTGCCAGAGATATAA 57.017 33.333 0.00 0.00 0.00 0.98
395 396 8.928448 AGATTAAAGTGTGCCAGAGATATAAGA 58.072 33.333 0.00 0.00 0.00 2.10
396 397 9.717942 GATTAAAGTGTGCCAGAGATATAAGAT 57.282 33.333 0.00 0.00 0.00 2.40
398 399 6.992664 AAGTGTGCCAGAGATATAAGATCT 57.007 37.500 0.00 0.00 0.00 2.75
400 401 7.372260 AGTGTGCCAGAGATATAAGATCTTT 57.628 36.000 14.36 4.45 0.00 2.52
401 402 7.215789 AGTGTGCCAGAGATATAAGATCTTTG 58.784 38.462 14.36 3.67 32.11 2.77
402 403 7.070447 AGTGTGCCAGAGATATAAGATCTTTGA 59.930 37.037 14.36 2.20 33.57 2.69
403 404 7.384660 GTGTGCCAGAGATATAAGATCTTTGAG 59.615 40.741 14.36 0.15 33.57 3.02
432 1346 3.119280 TGACGAACCGAGCAATCTTGATA 60.119 43.478 0.00 0.00 0.00 2.15
447 1361 9.049523 GCAATCTTGATATGATGTACTTTCTCA 57.950 33.333 0.00 0.00 0.00 3.27
513 1503 0.461961 AAGATACTCTGTCCCTGCGC 59.538 55.000 0.00 0.00 0.00 6.09
521 1515 1.065491 TCTGTCCCTGCGCAATAATGT 60.065 47.619 13.05 0.00 0.00 2.71
523 1517 1.339535 TGTCCCTGCGCAATAATGTCA 60.340 47.619 13.05 1.84 0.00 3.58
632 3711 1.145377 GTACAGGCGTATGGGGTGG 59.855 63.158 0.00 0.00 0.00 4.61
638 3717 2.046700 CGTATGGGGTGGTGCGTT 60.047 61.111 0.00 0.00 0.00 4.84
640 3719 1.880186 GTATGGGGTGGTGCGTTTG 59.120 57.895 0.00 0.00 0.00 2.93
642 3721 2.419011 TATGGGGTGGTGCGTTTGCT 62.419 55.000 0.00 0.00 43.34 3.91
644 3723 2.904866 GGGTGGTGCGTTTGCTCA 60.905 61.111 0.00 0.00 43.34 4.26
652 3739 4.389576 CGTTTGCTCACTGCCGCC 62.390 66.667 0.00 0.00 42.00 6.13
825 3955 1.076339 CCGCTCCTCCTCTTCCTCT 60.076 63.158 0.00 0.00 0.00 3.69
1093 4241 2.224161 CCTCCCAACTAGCATGTCTAGC 60.224 54.545 18.38 0.00 46.93 3.42
1154 4314 0.883833 GGGACCTGCAAGTTCATGTG 59.116 55.000 0.00 0.00 0.00 3.21
1156 4316 1.267806 GGACCTGCAAGTTCATGTGTG 59.732 52.381 0.00 0.00 0.00 3.82
1179 4341 6.477360 GTGTTGAATTTGTTAACCGTGGATTT 59.523 34.615 2.48 0.00 0.00 2.17
1180 4342 7.648510 GTGTTGAATTTGTTAACCGTGGATTTA 59.351 33.333 2.48 0.00 0.00 1.40
1227 4389 1.867233 CCCTGCGCAATATGTCAGTAC 59.133 52.381 13.05 0.00 0.00 2.73
1228 4390 1.867233 CCTGCGCAATATGTCAGTACC 59.133 52.381 13.05 0.00 0.00 3.34
1234 4404 4.202010 GCGCAATATGTCAGTACCCATTTT 60.202 41.667 0.30 0.00 0.00 1.82
1298 4477 3.306641 GCTATGAGTGATTAGGAGCCCAG 60.307 52.174 0.00 0.00 0.00 4.45
1305 4484 3.135530 GTGATTAGGAGCCCAGAATGTCT 59.864 47.826 0.00 0.00 0.00 3.41
1567 4812 7.880160 ATGCTTATAATTTTGCTCCACTACA 57.120 32.000 0.00 0.00 0.00 2.74
1586 4831 8.677300 CCACTACAATGCATTTTGAAGTATAGT 58.323 33.333 9.83 3.14 0.00 2.12
1593 4838 7.477144 TGCATTTTGAAGTATAGTATGGACG 57.523 36.000 0.00 0.00 0.00 4.79
1607 4855 5.661458 AGTATGGACGTATGGAAACTCTTG 58.339 41.667 0.00 0.00 0.00 3.02
1627 4875 7.041098 ACTCTTGTGGAAACTGTAAATGCTTAG 60.041 37.037 0.00 0.00 0.00 2.18
1644 4892 5.312895 TGCTTAGAATTTTGCTCCACTACA 58.687 37.500 0.00 0.00 0.00 2.74
1655 4903 3.825585 TGCTCCACTACAATGCATTTTGA 59.174 39.130 9.83 0.00 0.00 2.69
1661 4909 8.800370 TCCACTACAATGCATTTTGAAGTATA 57.200 30.769 9.83 0.58 0.00 1.47
1662 4910 8.892723 TCCACTACAATGCATTTTGAAGTATAG 58.107 33.333 9.83 2.53 0.00 1.31
1663 4911 8.677300 CCACTACAATGCATTTTGAAGTATAGT 58.323 33.333 9.83 3.14 0.00 2.12
1749 4997 1.328680 CATACGCATGCTTGACCAGAC 59.671 52.381 17.13 0.00 0.00 3.51
1911 5160 5.053145 CGGGAGAAAATCACCAGAGATTAG 58.947 45.833 0.00 0.00 37.24 1.73
1918 5167 7.824779 AGAAAATCACCAGAGATTAGTACAACC 59.175 37.037 0.00 0.00 37.24 3.77
2114 5363 2.077687 AGGAAGCATTTATGGCCTGG 57.922 50.000 3.32 0.00 0.00 4.45
2476 5729 6.255887 GGGTAACACTGATAGTTTCTTCATCG 59.744 42.308 0.00 0.00 39.74 3.84
2633 5897 7.981142 TGCTAATTACAAGCATGTTTAGGTAC 58.019 34.615 12.86 0.00 44.78 3.34
2720 5984 8.967918 TGTACTTATATCCTTTCGATATCAGGG 58.032 37.037 3.12 0.00 42.22 4.45
2721 5985 6.879400 ACTTATATCCTTTCGATATCAGGGC 58.121 40.000 3.12 0.00 42.22 5.19
2722 5986 6.440647 ACTTATATCCTTTCGATATCAGGGCA 59.559 38.462 3.12 0.00 42.22 5.36
2723 5987 5.965033 ATATCCTTTCGATATCAGGGCAT 57.035 39.130 3.12 0.00 39.57 4.40
2724 5988 3.685139 TCCTTTCGATATCAGGGCATC 57.315 47.619 3.12 0.00 0.00 3.91
2725 5989 3.242867 TCCTTTCGATATCAGGGCATCT 58.757 45.455 3.12 0.00 0.00 2.90
2726 5990 3.648067 TCCTTTCGATATCAGGGCATCTT 59.352 43.478 3.12 0.00 0.00 2.40
2727 5991 3.750130 CCTTTCGATATCAGGGCATCTTG 59.250 47.826 3.12 0.00 0.00 3.02
2728 5992 4.384056 CTTTCGATATCAGGGCATCTTGT 58.616 43.478 3.12 0.00 0.00 3.16
2729 5993 5.511373 CCTTTCGATATCAGGGCATCTTGTA 60.511 44.000 3.12 0.00 0.00 2.41
2835 6109 1.277580 CCCCCACTCTCAGAGCCATT 61.278 60.000 0.00 0.00 32.04 3.16
3190 6590 3.370978 AGAATGTCGCCAATGTTCTTACG 59.629 43.478 0.00 0.00 0.00 3.18
3288 6702 8.131847 TGTCATGAATTTATGAATGTTTGGGA 57.868 30.769 13.93 0.00 38.69 4.37
3627 7045 6.635030 AACTGTTACTCTTCCCAAATGTTC 57.365 37.500 0.00 0.00 0.00 3.18
3661 7079 7.482169 ACATTCAGTTCCTAGATTCACACTA 57.518 36.000 0.00 0.00 0.00 2.74
3773 7191 2.496899 AATGGACAGTGCGAAGGAAT 57.503 45.000 0.00 0.00 0.00 3.01
3796 7214 1.173913 CCAGGTCCGGGAATTTGAAC 58.826 55.000 0.90 0.00 0.00 3.18
3865 7283 3.335579 AGTTATCCTCGTGCTTGGTTTC 58.664 45.455 0.00 0.00 0.00 2.78
3960 7400 7.524717 AATAACTAAATGCAAACTGTGGAGT 57.475 32.000 0.00 0.00 0.00 3.85
3973 7413 2.440946 TGGAGTCTCCACCTGTGTG 58.559 57.895 18.15 0.00 42.67 3.82
4063 7503 3.568007 ACACCAACGTCAAATAATGCAGT 59.432 39.130 0.00 0.00 0.00 4.40
4263 7806 6.091441 GCTACTTGTGTCTTATGGAAAGTGAG 59.909 42.308 0.00 0.00 0.00 3.51
4310 7853 2.159627 CACGTTTTGGCTAGTCATCACC 59.840 50.000 0.00 0.00 0.00 4.02
4349 7892 3.269178 GCTTGCTATCAGCTTCACTTCT 58.731 45.455 0.00 0.00 42.97 2.85
4364 7907 3.994392 TCACTTCTATGTGGTTTCTTCGC 59.006 43.478 0.00 0.00 38.40 4.70
4390 7933 4.119862 ACAAGCGCTACAACATATAGGTG 58.880 43.478 12.05 2.26 42.09 4.00
4424 7967 4.686972 TGATCAGCCTCTCTAAAATCGTG 58.313 43.478 0.00 0.00 0.00 4.35
4425 7968 4.160439 TGATCAGCCTCTCTAAAATCGTGT 59.840 41.667 0.00 0.00 0.00 4.49
4459 8002 6.372659 TCTTCTTGATCTTCTAATGCCAACAC 59.627 38.462 0.00 0.00 0.00 3.32
4506 8054 3.647636 CTCCCTCAACAAGATCCCTCTA 58.352 50.000 0.00 0.00 0.00 2.43
4515 8063 3.979347 ACAAGATCCCTCTATCCATTGCT 59.021 43.478 0.00 0.00 0.00 3.91
4530 8078 4.021916 CCATTGCTGGAATCCTTCTCTTT 58.978 43.478 0.00 0.00 46.37 2.52
4630 8178 1.650912 CTTATGGCTGCCGACATGC 59.349 57.895 14.98 0.00 39.82 4.06
5048 8674 0.747283 CCAACTCAGCTGGGCAGATC 60.747 60.000 15.27 0.00 0.00 2.75
5055 8681 0.758310 AGCTGGGCAGATCAGATCGA 60.758 55.000 4.67 0.00 34.36 3.59
5093 8726 2.359531 CTCTTATCCTGGAGACACGGTC 59.640 54.545 1.52 0.00 35.60 4.79
5109 8742 1.760192 GGTCTCTGTTCTACCGGCTA 58.240 55.000 0.00 0.00 0.00 3.93
5189 8840 4.323868 GGAGGGTTTCTCTCTACTGCATTT 60.324 45.833 0.00 0.00 42.10 2.32
5190 8841 5.248380 AGGGTTTCTCTCTACTGCATTTT 57.752 39.130 0.00 0.00 0.00 1.82
5191 8842 5.249420 AGGGTTTCTCTCTACTGCATTTTC 58.751 41.667 0.00 0.00 0.00 2.29
5192 8843 4.396478 GGGTTTCTCTCTACTGCATTTTCC 59.604 45.833 0.00 0.00 0.00 3.13
5193 8844 5.003804 GGTTTCTCTCTACTGCATTTTCCA 58.996 41.667 0.00 0.00 0.00 3.53
5194 8845 5.649831 GGTTTCTCTCTACTGCATTTTCCAT 59.350 40.000 0.00 0.00 0.00 3.41
5195 8846 6.151817 GGTTTCTCTCTACTGCATTTTCCATT 59.848 38.462 0.00 0.00 0.00 3.16
5196 8847 6.748333 TTCTCTCTACTGCATTTTCCATTG 57.252 37.500 0.00 0.00 0.00 2.82
5197 8848 4.637534 TCTCTCTACTGCATTTTCCATTGC 59.362 41.667 0.00 0.00 39.33 3.56
5198 8849 4.592942 TCTCTACTGCATTTTCCATTGCT 58.407 39.130 0.00 0.00 39.60 3.91
5199 8850 4.397103 TCTCTACTGCATTTTCCATTGCTG 59.603 41.667 0.00 0.00 41.77 4.41
5200 8851 2.754946 ACTGCATTTTCCATTGCTGG 57.245 45.000 6.71 0.00 44.64 4.85
5201 8852 1.972795 ACTGCATTTTCCATTGCTGGT 59.027 42.857 6.71 0.00 43.61 4.00
5202 8853 2.028748 ACTGCATTTTCCATTGCTGGTC 60.029 45.455 6.71 0.00 43.61 4.02
5203 8854 1.969208 TGCATTTTCCATTGCTGGTCA 59.031 42.857 0.00 0.00 43.61 4.02
5204 8855 2.367894 TGCATTTTCCATTGCTGGTCAA 59.632 40.909 0.00 0.00 43.61 3.18
5205 8856 2.997986 GCATTTTCCATTGCTGGTCAAG 59.002 45.455 0.00 0.00 43.61 3.02
5230 8881 2.708216 TCACCTCACTCAAGCAACAA 57.292 45.000 0.00 0.00 0.00 2.83
5247 8898 0.884704 CAAGCGTGTTGTGCCCTAGT 60.885 55.000 0.00 0.00 0.00 2.57
5252 8979 0.313987 GTGTTGTGCCCTAGTTTGCC 59.686 55.000 0.00 0.00 0.00 4.52
5253 8980 0.106469 TGTTGTGCCCTAGTTTGCCA 60.106 50.000 0.00 0.00 0.00 4.92
5254 8981 1.256812 GTTGTGCCCTAGTTTGCCAT 58.743 50.000 0.00 0.00 0.00 4.40
5255 8982 1.202348 GTTGTGCCCTAGTTTGCCATC 59.798 52.381 0.00 0.00 0.00 3.51
5256 8983 0.698238 TGTGCCCTAGTTTGCCATCT 59.302 50.000 0.00 0.00 0.00 2.90
5257 8984 1.340017 TGTGCCCTAGTTTGCCATCTC 60.340 52.381 0.00 0.00 0.00 2.75
5258 8985 1.065126 GTGCCCTAGTTTGCCATCTCT 60.065 52.381 0.00 0.00 0.00 3.10
5259 8986 1.635487 TGCCCTAGTTTGCCATCTCTT 59.365 47.619 0.00 0.00 0.00 2.85
5260 8987 2.041620 TGCCCTAGTTTGCCATCTCTTT 59.958 45.455 0.00 0.00 0.00 2.52
5261 8988 3.092301 GCCCTAGTTTGCCATCTCTTTT 58.908 45.455 0.00 0.00 0.00 2.27
5262 8989 3.119352 GCCCTAGTTTGCCATCTCTTTTG 60.119 47.826 0.00 0.00 0.00 2.44
5263 8990 3.445096 CCCTAGTTTGCCATCTCTTTTGG 59.555 47.826 0.00 0.00 37.31 3.28
5264 8991 4.082125 CCTAGTTTGCCATCTCTTTTGGT 58.918 43.478 0.00 0.00 36.57 3.67
5265 8992 4.524328 CCTAGTTTGCCATCTCTTTTGGTT 59.476 41.667 0.00 0.00 36.57 3.67
5266 8993 5.011023 CCTAGTTTGCCATCTCTTTTGGTTT 59.989 40.000 0.00 0.00 36.57 3.27
5267 8994 4.948847 AGTTTGCCATCTCTTTTGGTTTC 58.051 39.130 0.00 0.00 36.57 2.78
5268 8995 4.651045 AGTTTGCCATCTCTTTTGGTTTCT 59.349 37.500 0.00 0.00 36.57 2.52
5269 8996 4.853924 TTGCCATCTCTTTTGGTTTCTC 57.146 40.909 0.00 0.00 36.57 2.87
5270 8997 4.104383 TGCCATCTCTTTTGGTTTCTCT 57.896 40.909 0.00 0.00 36.57 3.10
5271 8998 4.074970 TGCCATCTCTTTTGGTTTCTCTC 58.925 43.478 0.00 0.00 36.57 3.20
5272 8999 4.202503 TGCCATCTCTTTTGGTTTCTCTCT 60.203 41.667 0.00 0.00 36.57 3.10
5273 9000 5.013079 TGCCATCTCTTTTGGTTTCTCTCTA 59.987 40.000 0.00 0.00 36.57 2.43
5274 9001 5.584251 GCCATCTCTTTTGGTTTCTCTCTAG 59.416 44.000 0.00 0.00 36.57 2.43
5275 9002 6.706295 CCATCTCTTTTGGTTTCTCTCTAGT 58.294 40.000 0.00 0.00 0.00 2.57
5276 9003 6.593382 CCATCTCTTTTGGTTTCTCTCTAGTG 59.407 42.308 0.00 0.00 0.00 2.74
5277 9004 6.732896 TCTCTTTTGGTTTCTCTCTAGTGT 57.267 37.500 0.00 0.00 0.00 3.55
5278 9005 7.834881 TCTCTTTTGGTTTCTCTCTAGTGTA 57.165 36.000 0.00 0.00 0.00 2.90
5279 9006 8.423906 TCTCTTTTGGTTTCTCTCTAGTGTAT 57.576 34.615 0.00 0.00 0.00 2.29
5280 9007 8.871125 TCTCTTTTGGTTTCTCTCTAGTGTATT 58.129 33.333 0.00 0.00 0.00 1.89
5281 9008 9.495572 CTCTTTTGGTTTCTCTCTAGTGTATTT 57.504 33.333 0.00 0.00 0.00 1.40
5282 9009 9.847224 TCTTTTGGTTTCTCTCTAGTGTATTTT 57.153 29.630 0.00 0.00 0.00 1.82
5297 9024 4.073052 TTTTTCCCATCGCGTGCT 57.927 50.000 5.77 0.00 0.00 4.40
5298 9025 2.336341 TTTTTCCCATCGCGTGCTT 58.664 47.368 5.77 0.00 0.00 3.91
5299 9026 1.524848 TTTTTCCCATCGCGTGCTTA 58.475 45.000 5.77 0.00 0.00 3.09
5300 9027 1.745232 TTTTCCCATCGCGTGCTTAT 58.255 45.000 5.77 0.00 0.00 1.73
5301 9028 2.605837 TTTCCCATCGCGTGCTTATA 57.394 45.000 5.77 0.00 0.00 0.98
5302 9029 2.148916 TTCCCATCGCGTGCTTATAG 57.851 50.000 5.77 0.00 0.00 1.31
5303 9030 1.037493 TCCCATCGCGTGCTTATAGT 58.963 50.000 5.77 0.00 0.00 2.12
5304 9031 1.411246 TCCCATCGCGTGCTTATAGTT 59.589 47.619 5.77 0.00 0.00 2.24
5305 9032 2.159014 TCCCATCGCGTGCTTATAGTTT 60.159 45.455 5.77 0.00 0.00 2.66
5306 9033 2.032894 CCCATCGCGTGCTTATAGTTTG 60.033 50.000 5.77 0.00 0.00 2.93
5307 9034 2.607635 CCATCGCGTGCTTATAGTTTGT 59.392 45.455 5.77 0.00 0.00 2.83
5308 9035 3.544048 CCATCGCGTGCTTATAGTTTGTG 60.544 47.826 5.77 0.00 0.00 3.33
5309 9036 2.679450 TCGCGTGCTTATAGTTTGTGT 58.321 42.857 5.77 0.00 0.00 3.72
5310 9037 2.410392 TCGCGTGCTTATAGTTTGTGTG 59.590 45.455 5.77 0.00 0.00 3.82
5311 9038 2.473868 CGCGTGCTTATAGTTTGTGTGG 60.474 50.000 0.00 0.00 0.00 4.17
5312 9039 2.727916 GCGTGCTTATAGTTTGTGTGGC 60.728 50.000 0.00 0.00 0.00 5.01
5313 9040 2.482336 CGTGCTTATAGTTTGTGTGGCA 59.518 45.455 0.00 0.00 0.00 4.92
5314 9041 3.424829 CGTGCTTATAGTTTGTGTGGCAG 60.425 47.826 0.00 0.00 0.00 4.85
5315 9042 3.751175 GTGCTTATAGTTTGTGTGGCAGA 59.249 43.478 0.00 0.00 0.00 4.26
5316 9043 3.751175 TGCTTATAGTTTGTGTGGCAGAC 59.249 43.478 8.00 8.00 32.89 3.51
5317 9044 4.003648 GCTTATAGTTTGTGTGGCAGACT 58.996 43.478 16.26 4.74 43.75 3.24
5318 9045 4.455877 GCTTATAGTTTGTGTGGCAGACTT 59.544 41.667 16.26 2.15 39.19 3.01
5319 9046 5.617751 GCTTATAGTTTGTGTGGCAGACTTG 60.618 44.000 16.26 0.00 39.19 3.16
5320 9047 2.128771 AGTTTGTGTGGCAGACTTGT 57.871 45.000 16.26 0.00 39.19 3.16
5321 9048 2.446435 AGTTTGTGTGGCAGACTTGTT 58.554 42.857 16.26 0.00 39.19 2.83
5322 9049 2.825532 AGTTTGTGTGGCAGACTTGTTT 59.174 40.909 16.26 0.00 39.19 2.83
5323 9050 3.119495 AGTTTGTGTGGCAGACTTGTTTC 60.119 43.478 16.26 1.47 39.19 2.78
5324 9051 1.013596 TGTGTGGCAGACTTGTTTCG 58.986 50.000 16.26 0.00 0.00 3.46
5325 9052 1.295792 GTGTGGCAGACTTGTTTCGA 58.704 50.000 7.64 0.00 0.00 3.71
5326 9053 1.261619 GTGTGGCAGACTTGTTTCGAG 59.738 52.381 7.64 0.00 0.00 4.04
5327 9054 0.868406 GTGGCAGACTTGTTTCGAGG 59.132 55.000 0.00 0.00 0.00 4.63
5328 9055 0.884704 TGGCAGACTTGTTTCGAGGC 60.885 55.000 0.00 0.00 0.00 4.70
5329 9056 1.493311 GCAGACTTGTTTCGAGGCG 59.507 57.895 0.00 0.00 0.00 5.52
5330 9057 0.944311 GCAGACTTGTTTCGAGGCGA 60.944 55.000 0.00 0.00 0.00 5.54
5331 9058 1.063806 CAGACTTGTTTCGAGGCGAG 58.936 55.000 0.00 4.58 37.14 5.03
5332 9059 0.038159 AGACTTGTTTCGAGGCGAGG 60.038 55.000 9.44 0.00 37.14 4.63
5333 9060 0.319641 GACTTGTTTCGAGGCGAGGT 60.320 55.000 9.44 0.00 37.14 3.85
5334 9061 0.106149 ACTTGTTTCGAGGCGAGGTT 59.894 50.000 9.44 0.00 37.14 3.50
5335 9062 1.226746 CTTGTTTCGAGGCGAGGTTT 58.773 50.000 0.00 0.00 37.14 3.27
5336 9063 0.941542 TTGTTTCGAGGCGAGGTTTG 59.058 50.000 0.00 0.00 37.14 2.93
5337 9064 0.105224 TGTTTCGAGGCGAGGTTTGA 59.895 50.000 0.00 0.00 37.14 2.69
5356 9083 3.837570 CTGCTGCTGTGGCTGTGGA 62.838 63.158 0.00 0.00 39.19 4.02
5377 9104 3.544772 GGCCTGGCCTAGTCTCTC 58.455 66.667 30.42 0.00 46.69 3.20
5461 9188 2.076863 CCGCTCTCCCTGTGTAAAAAG 58.923 52.381 0.00 0.00 0.00 2.27
5463 9190 3.600388 CGCTCTCCCTGTGTAAAAAGAT 58.400 45.455 0.00 0.00 0.00 2.40
5464 9191 3.372206 CGCTCTCCCTGTGTAAAAAGATG 59.628 47.826 0.00 0.00 0.00 2.90
5469 9196 6.467677 TCTCCCTGTGTAAAAAGATGAAGAG 58.532 40.000 0.00 0.00 0.00 2.85
5470 9197 5.560724 TCCCTGTGTAAAAAGATGAAGAGG 58.439 41.667 0.00 0.00 0.00 3.69
5472 9199 6.003950 CCCTGTGTAAAAAGATGAAGAGGAA 58.996 40.000 0.00 0.00 0.00 3.36
5478 9225 5.474578 AAAAAGATGAAGAGGAAAAGGCC 57.525 39.130 0.00 0.00 0.00 5.19
5544 9300 1.003233 TCACTCAGTACAGCCGAGAGA 59.997 52.381 0.00 0.00 0.00 3.10
5545 9301 1.813178 CACTCAGTACAGCCGAGAGAA 59.187 52.381 0.00 0.00 0.00 2.87
5546 9302 1.813786 ACTCAGTACAGCCGAGAGAAC 59.186 52.381 0.00 0.00 0.00 3.01
5697 9457 2.819608 GGCTCTTGGTTGAATGCAGTTA 59.180 45.455 0.00 0.00 0.00 2.24
5700 9460 2.811431 TCTTGGTTGAATGCAGTTACCG 59.189 45.455 12.71 2.76 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.009143 ACTCCGCTAAATTTCCTCAGGTT 59.991 43.478 0.00 0.00 0.00 3.50
1 2 2.572104 ACTCCGCTAAATTTCCTCAGGT 59.428 45.455 0.00 0.00 0.00 4.00
3 4 2.860735 CGACTCCGCTAAATTTCCTCAG 59.139 50.000 0.00 0.00 0.00 3.35
7 8 2.858941 GTCTCGACTCCGCTAAATTTCC 59.141 50.000 0.00 0.00 35.37 3.13
8 9 3.508762 TGTCTCGACTCCGCTAAATTTC 58.491 45.455 0.00 0.00 35.37 2.17
9 10 3.056749 ACTGTCTCGACTCCGCTAAATTT 60.057 43.478 0.00 0.00 35.37 1.82
11 12 2.093106 ACTGTCTCGACTCCGCTAAAT 58.907 47.619 0.00 0.00 35.37 1.40
12 13 1.467734 GACTGTCTCGACTCCGCTAAA 59.532 52.381 0.00 0.00 35.37 1.85
13 14 1.085091 GACTGTCTCGACTCCGCTAA 58.915 55.000 0.00 0.00 35.37 3.09
14 15 0.743701 GGACTGTCTCGACTCCGCTA 60.744 60.000 7.85 0.00 35.37 4.26
15 16 2.041686 GGACTGTCTCGACTCCGCT 61.042 63.158 7.85 0.00 35.37 5.52
16 17 2.041686 AGGACTGTCTCGACTCCGC 61.042 63.158 7.85 0.00 32.65 5.54
17 18 1.797441 CAGGACTGTCTCGACTCCG 59.203 63.158 7.85 0.00 32.65 4.63
18 19 0.963355 AGCAGGACTGTCTCGACTCC 60.963 60.000 7.85 0.00 0.00 3.85
19 20 0.885196 AAGCAGGACTGTCTCGACTC 59.115 55.000 7.85 0.00 0.00 3.36
20 21 0.600557 CAAGCAGGACTGTCTCGACT 59.399 55.000 7.85 0.00 0.00 4.18
21 22 0.389166 CCAAGCAGGACTGTCTCGAC 60.389 60.000 7.85 0.00 41.22 4.20
22 23 1.967535 CCAAGCAGGACTGTCTCGA 59.032 57.895 7.85 0.00 41.22 4.04
23 24 1.739562 GCCAAGCAGGACTGTCTCG 60.740 63.158 7.85 0.38 41.22 4.04
24 25 1.376553 GGCCAAGCAGGACTGTCTC 60.377 63.158 7.85 0.00 44.70 3.36
25 26 2.753029 GGCCAAGCAGGACTGTCT 59.247 61.111 7.85 0.00 44.70 3.41
31 32 2.401699 CTGACAGTGGCCAAGCAGGA 62.402 60.000 7.24 0.00 41.22 3.86
32 33 1.970114 CTGACAGTGGCCAAGCAGG 60.970 63.158 7.24 0.00 41.84 4.85
33 34 0.820891 AACTGACAGTGGCCAAGCAG 60.821 55.000 7.24 15.05 0.00 4.24
34 35 0.819259 GAACTGACAGTGGCCAAGCA 60.819 55.000 7.24 2.04 0.00 3.91
35 36 1.845809 CGAACTGACAGTGGCCAAGC 61.846 60.000 7.24 0.00 0.00 4.01
36 37 0.249868 TCGAACTGACAGTGGCCAAG 60.250 55.000 7.24 5.83 0.00 3.61
37 38 1.826709 TCGAACTGACAGTGGCCAA 59.173 52.632 7.24 0.00 0.00 4.52
38 39 3.544772 TCGAACTGACAGTGGCCA 58.455 55.556 9.33 0.00 0.00 5.36
47 48 8.277490 ACTATAAGAACATGTAGTCGAACTGA 57.723 34.615 0.00 0.00 0.00 3.41
48 49 7.644551 GGACTATAAGAACATGTAGTCGAACTG 59.355 40.741 14.84 1.65 42.36 3.16
49 50 7.338703 TGGACTATAAGAACATGTAGTCGAACT 59.661 37.037 14.84 0.00 42.36 3.01
50 51 7.478322 TGGACTATAAGAACATGTAGTCGAAC 58.522 38.462 14.84 5.50 42.36 3.95
51 52 7.634671 TGGACTATAAGAACATGTAGTCGAA 57.365 36.000 14.84 6.25 42.36 3.71
52 53 7.649057 CATGGACTATAAGAACATGTAGTCGA 58.351 38.462 14.84 12.57 42.36 4.20
53 54 7.859613 CATGGACTATAAGAACATGTAGTCG 57.140 40.000 14.84 2.20 42.36 4.18
59 60 5.237996 CAGGCACATGGACTATAAGAACATG 59.762 44.000 0.00 0.00 43.29 3.21
60 61 5.371526 CAGGCACATGGACTATAAGAACAT 58.628 41.667 0.00 0.00 29.10 2.71
61 62 4.384098 CCAGGCACATGGACTATAAGAACA 60.384 45.833 0.00 0.00 43.57 3.18
62 63 4.130118 CCAGGCACATGGACTATAAGAAC 58.870 47.826 0.00 0.00 43.57 3.01
63 64 3.433598 GCCAGGCACATGGACTATAAGAA 60.434 47.826 6.55 0.00 43.57 2.52
64 65 2.104792 GCCAGGCACATGGACTATAAGA 59.895 50.000 6.55 0.00 43.57 2.10
65 66 2.498167 GCCAGGCACATGGACTATAAG 58.502 52.381 6.55 0.00 43.57 1.73
66 67 1.142870 GGCCAGGCACATGGACTATAA 59.857 52.381 15.19 0.00 45.80 0.98
67 68 0.764890 GGCCAGGCACATGGACTATA 59.235 55.000 15.19 0.00 45.80 1.31
68 69 1.533711 GGCCAGGCACATGGACTAT 59.466 57.895 15.19 0.00 45.80 2.12
69 70 2.998097 GGCCAGGCACATGGACTA 59.002 61.111 15.19 0.00 45.80 2.59
72 73 2.679342 GGTAGGCCAGGCACATGGA 61.679 63.158 15.19 0.00 43.57 3.41
73 74 2.124151 GGTAGGCCAGGCACATGG 60.124 66.667 15.19 0.00 43.72 3.66
74 75 2.514592 CGGTAGGCCAGGCACATG 60.515 66.667 15.19 0.00 34.09 3.21
75 76 3.009115 ACGGTAGGCCAGGCACAT 61.009 61.111 15.19 0.40 34.09 3.21
76 77 4.015406 CACGGTAGGCCAGGCACA 62.015 66.667 15.19 0.00 34.09 4.57
80 81 4.473520 CCAGCACGGTAGGCCAGG 62.474 72.222 5.01 0.00 34.09 4.45
90 91 2.114670 ATCAAATCCGGCCAGCACG 61.115 57.895 2.24 0.00 0.00 5.34
91 92 1.434696 CATCAAATCCGGCCAGCAC 59.565 57.895 2.24 0.00 0.00 4.40
117 118 5.124297 CACTCATCCAACTGTATGCATCAAA 59.876 40.000 0.19 0.00 0.00 2.69
130 131 3.131400 GGTAGGAGAGTCACTCATCCAAC 59.869 52.174 19.59 7.22 46.54 3.77
137 138 2.161030 ACAACGGTAGGAGAGTCACTC 58.839 52.381 0.00 0.00 44.24 3.51
140 141 2.313317 ACAACAACGGTAGGAGAGTCA 58.687 47.619 0.00 0.00 0.00 3.41
142 143 2.288030 CGAACAACAACGGTAGGAGAGT 60.288 50.000 0.00 0.00 0.00 3.24
143 144 2.288030 ACGAACAACAACGGTAGGAGAG 60.288 50.000 0.00 0.00 0.00 3.20
148 149 1.523934 GTCCACGAACAACAACGGTAG 59.476 52.381 0.00 0.00 0.00 3.18
149 150 1.134877 TGTCCACGAACAACAACGGTA 60.135 47.619 0.00 0.00 0.00 4.02
150 151 0.391395 TGTCCACGAACAACAACGGT 60.391 50.000 0.00 0.00 0.00 4.83
161 162 2.002509 TTCGACGGTTGTGTCCACGA 62.003 55.000 0.00 0.00 35.40 4.35
256 257 8.358148 CGAAGCCAAATTATAACTACTCTCCTA 58.642 37.037 0.00 0.00 0.00 2.94
340 341 4.864704 AATGTTTTTCCATAGCAACGGT 57.135 36.364 0.00 0.00 0.00 4.83
341 342 6.616947 TCTAAATGTTTTTCCATAGCAACGG 58.383 36.000 0.00 0.00 0.00 4.44
342 343 7.807907 ACTTCTAAATGTTTTTCCATAGCAACG 59.192 33.333 0.00 0.00 0.00 4.10
389 390 9.309224 TCGTCAATATCCCTCAAAGATCTTATA 57.691 33.333 8.75 2.17 0.00 0.98
390 391 8.195165 TCGTCAATATCCCTCAAAGATCTTAT 57.805 34.615 8.75 0.00 0.00 1.73
392 393 6.485830 TCGTCAATATCCCTCAAAGATCTT 57.514 37.500 0.88 0.88 0.00 2.40
393 394 6.284459 GTTCGTCAATATCCCTCAAAGATCT 58.716 40.000 0.00 0.00 0.00 2.75
394 395 5.467063 GGTTCGTCAATATCCCTCAAAGATC 59.533 44.000 0.00 0.00 0.00 2.75
395 396 5.368989 GGTTCGTCAATATCCCTCAAAGAT 58.631 41.667 0.00 0.00 0.00 2.40
396 397 4.679639 CGGTTCGTCAATATCCCTCAAAGA 60.680 45.833 0.00 0.00 0.00 2.52
398 399 3.196039 TCGGTTCGTCAATATCCCTCAAA 59.804 43.478 0.00 0.00 0.00 2.69
400 401 2.361119 CTCGGTTCGTCAATATCCCTCA 59.639 50.000 0.00 0.00 0.00 3.86
401 402 2.862921 GCTCGGTTCGTCAATATCCCTC 60.863 54.545 0.00 0.00 0.00 4.30
402 403 1.068741 GCTCGGTTCGTCAATATCCCT 59.931 52.381 0.00 0.00 0.00 4.20
403 404 1.202486 TGCTCGGTTCGTCAATATCCC 60.202 52.381 0.00 0.00 0.00 3.85
432 1346 8.641498 ATTTTGGAACTGAGAAAGTACATCAT 57.359 30.769 0.00 0.00 38.56 2.45
447 1361 9.588096 ACCTAAGATTTCAAGTATTTTGGAACT 57.412 29.630 0.00 0.00 0.00 3.01
496 1486 0.175760 TTGCGCAGGGACAGAGTATC 59.824 55.000 11.31 0.00 0.00 2.24
505 1495 2.346766 ATGACATTATTGCGCAGGGA 57.653 45.000 11.31 0.00 0.00 4.20
545 1539 5.215160 CGGAGGTTTCAAGTCAAAATTCTG 58.785 41.667 0.00 0.00 0.00 3.02
618 3681 4.109675 GCACCACCCCATACGCCT 62.110 66.667 0.00 0.00 0.00 5.52
683 3770 4.399395 TCGCAGCTTGCAGAGGGG 62.399 66.667 8.52 0.00 45.36 4.79
684 3771 3.123620 GTCGCAGCTTGCAGAGGG 61.124 66.667 8.52 0.00 45.36 4.30
685 3772 2.357881 TGTCGCAGCTTGCAGAGG 60.358 61.111 8.52 0.00 45.36 3.69
686 3773 3.166421 CTGTCGCAGCTTGCAGAG 58.834 61.111 8.52 0.00 45.36 3.35
825 3955 3.636231 CCGTGGAGCAAGTGGGGA 61.636 66.667 0.00 0.00 0.00 4.81
990 4131 0.105039 GCTACCTCATTCCGGGAGTG 59.895 60.000 12.97 12.97 34.79 3.51
993 4134 1.048724 CCTGCTACCTCATTCCGGGA 61.049 60.000 0.00 0.00 0.00 5.14
1044 4192 4.331992 CAGGCCGCATGATTGATAGATAAG 59.668 45.833 0.00 0.00 0.00 1.73
1059 4207 4.344865 GGAGGAAACCAGGCCGCA 62.345 66.667 0.00 0.00 0.00 5.69
1154 4314 4.922719 TCCACGGTTAACAAATTCAACAC 58.077 39.130 8.10 0.00 0.00 3.32
1156 4316 7.863877 ACTAAATCCACGGTTAACAAATTCAAC 59.136 33.333 8.10 0.00 0.00 3.18
1179 4341 4.348168 AGCAAAAGGAGTTCTCCTCAACTA 59.652 41.667 19.91 0.00 42.40 2.24
1180 4342 3.137360 AGCAAAAGGAGTTCTCCTCAACT 59.863 43.478 19.91 12.76 42.40 3.16
1298 4477 2.910199 TGCAGCATACCAGAGACATTC 58.090 47.619 0.00 0.00 0.00 2.67
1305 4484 3.643199 TTATGGTTGCAGCATACCAGA 57.357 42.857 24.57 20.40 46.82 3.86
1365 4545 2.351726 AGCATCGCGAAATTACCTTGTC 59.648 45.455 15.24 0.77 0.00 3.18
1369 4549 2.627945 TCAAGCATCGCGAAATTACCT 58.372 42.857 15.24 0.00 0.00 3.08
1379 4560 0.242017 AGCCAAGTTTCAAGCATCGC 59.758 50.000 0.00 0.00 0.00 4.58
1567 4812 8.559536 CGTCCATACTATACTTCAAAATGCATT 58.440 33.333 5.99 5.99 0.00 3.56
1586 4831 5.416083 CACAAGAGTTTCCATACGTCCATA 58.584 41.667 0.00 0.00 0.00 2.74
1593 4838 5.531287 ACAGTTTCCACAAGAGTTTCCATAC 59.469 40.000 0.00 0.00 0.00 2.39
1607 4855 9.476202 AAAATTCTAAGCATTTACAGTTTCCAC 57.524 29.630 0.00 0.00 0.00 4.02
1627 4875 4.808558 TGCATTGTAGTGGAGCAAAATTC 58.191 39.130 0.00 0.00 31.42 2.17
1644 4892 9.407380 TGTCCATACTATACTTCAAAATGCATT 57.593 29.630 5.99 5.99 0.00 3.56
1661 4909 7.419518 CCAAGAGAGTTTCCATATGTCCATACT 60.420 40.741 1.24 0.00 0.00 2.12
1662 4910 6.708054 CCAAGAGAGTTTCCATATGTCCATAC 59.292 42.308 1.24 0.00 0.00 2.39
1663 4911 6.615316 TCCAAGAGAGTTTCCATATGTCCATA 59.385 38.462 1.24 0.00 0.00 2.74
1664 4912 5.429762 TCCAAGAGAGTTTCCATATGTCCAT 59.570 40.000 1.24 0.00 0.00 3.41
1665 4913 4.782691 TCCAAGAGAGTTTCCATATGTCCA 59.217 41.667 1.24 0.00 0.00 4.02
1683 4931 7.147312 TGCATCAAGAATTAACAGTTTCCAAG 58.853 34.615 0.00 0.00 0.00 3.61
1749 4997 0.245539 CAGCAGGTCCCATTTTGCAG 59.754 55.000 3.16 0.00 38.97 4.41
1911 5160 1.338973 TCACGAGTGGACTGGTTGTAC 59.661 52.381 3.19 0.00 32.46 2.90
1918 5167 0.387367 CTCCGTTCACGAGTGGACTG 60.387 60.000 12.30 6.44 43.02 3.51
2114 5363 2.336554 CACAGTGCATTGTGTTAGCC 57.663 50.000 28.63 0.00 42.68 3.93
2467 5720 3.333804 TGCAGCATAACACGATGAAGAA 58.666 40.909 0.00 0.00 0.00 2.52
2476 5729 4.164822 ACAATGTTCTGCAGCATAACAC 57.835 40.909 24.27 7.33 34.30 3.32
2717 5981 7.919385 ATTCCATAAAATTACAAGATGCCCT 57.081 32.000 0.00 0.00 0.00 5.19
2776 6042 6.912591 GCAGTATTCATATTTTCCGAAACAGG 59.087 38.462 0.00 0.00 0.00 4.00
2778 6044 7.552687 AGAGCAGTATTCATATTTTCCGAAACA 59.447 33.333 0.00 0.00 0.00 2.83
2810 6076 1.005215 CTCTGAGAGTGGGGGCAAATT 59.995 52.381 0.16 0.00 0.00 1.82
2835 6109 4.649267 TCCCATGTGTGTTCCTTTATGA 57.351 40.909 0.00 0.00 0.00 2.15
2951 6311 2.872245 TGAACAGAGAAAGAGCAAACGG 59.128 45.455 0.00 0.00 0.00 4.44
3012 6383 6.732531 TGCTCAACTCATAATGTTCAGAAG 57.267 37.500 0.00 0.00 0.00 2.85
3288 6702 3.102204 CCCCTCAAGCATTCAAATCCTT 58.898 45.455 0.00 0.00 0.00 3.36
3402 6820 6.039382 GTCTTTAAGGGCCCAATAGTGTATTG 59.961 42.308 27.56 1.66 43.94 1.90
3405 6823 4.080186 GGTCTTTAAGGGCCCAATAGTGTA 60.080 45.833 27.56 0.00 0.00 2.90
3681 7099 3.042682 TGGAGGTACCTCACAACTGAAA 58.957 45.455 36.73 12.28 44.40 2.69
3773 7191 1.137594 AAATTCCCGGACCTGGTGGA 61.138 55.000 2.82 1.38 37.04 4.02
3796 7214 5.356882 TCAGTAAAACCATTGAAAGCTCG 57.643 39.130 0.00 0.00 0.00 5.03
3865 7283 3.753272 CCAACAGGTACTCCACTTCATTG 59.247 47.826 0.00 0.00 34.60 2.82
3897 7315 5.354234 ACAAGTGAACGAGTGAAGTTTGAAT 59.646 36.000 0.00 0.00 31.14 2.57
3898 7316 4.693566 ACAAGTGAACGAGTGAAGTTTGAA 59.306 37.500 0.00 0.00 31.14 2.69
3899 7317 4.250464 ACAAGTGAACGAGTGAAGTTTGA 58.750 39.130 0.00 0.00 31.14 2.69
3900 7318 4.600012 ACAAGTGAACGAGTGAAGTTTG 57.400 40.909 0.00 0.00 31.14 2.93
3901 7319 4.935808 AGAACAAGTGAACGAGTGAAGTTT 59.064 37.500 0.00 0.00 31.14 2.66
3902 7320 4.504858 AGAACAAGTGAACGAGTGAAGTT 58.495 39.130 0.00 0.00 34.07 2.66
3903 7321 4.124851 AGAACAAGTGAACGAGTGAAGT 57.875 40.909 0.00 0.00 0.00 3.01
3960 7400 1.788229 TCTTGTCACACAGGTGGAGA 58.212 50.000 4.24 0.00 45.32 3.71
4013 7453 2.165030 GGAACTGAGTTGGAATGCCATG 59.835 50.000 0.90 0.00 45.46 3.66
4049 7489 7.965107 CAGGTTCTTTAGACTGCATTATTTGAC 59.035 37.037 0.00 0.00 0.00 3.18
4063 7503 2.633967 TGGCCGTAACAGGTTCTTTAGA 59.366 45.455 0.00 0.00 0.00 2.10
4289 7832 2.159627 GGTGATGACTAGCCAAAACGTG 59.840 50.000 0.00 0.00 0.00 4.49
4310 7853 2.106683 CCCCAAAACTCCGCTAGCG 61.107 63.158 29.93 29.93 39.44 4.26
4349 7892 2.037902 TGTCTGGCGAAGAAACCACATA 59.962 45.455 0.00 0.00 36.40 2.29
4364 7907 1.442769 ATGTTGTAGCGCTTGTCTGG 58.557 50.000 18.68 0.00 0.00 3.86
4376 7919 7.998383 AGATTCATTTGGCACCTATATGTTGTA 59.002 33.333 0.00 0.00 0.00 2.41
4390 7933 2.957006 AGGCTGATCAGATTCATTTGGC 59.043 45.455 27.04 9.00 0.00 4.52
4424 7967 6.096695 AGAAGATCAAGAAGAGTAAAGCGAC 58.903 40.000 0.00 0.00 0.00 5.19
4425 7968 6.274157 AGAAGATCAAGAAGAGTAAAGCGA 57.726 37.500 0.00 0.00 0.00 4.93
4530 8078 0.739462 CCATGCTCGTGCGGACTTTA 60.739 55.000 5.27 0.00 43.34 1.85
4630 8178 6.475402 GGTTTCTTTGTTAGTGAAATGTGGTG 59.525 38.462 0.00 0.00 33.20 4.17
4881 8481 4.531426 GCCACCACCCACCCACAA 62.531 66.667 0.00 0.00 0.00 3.33
5048 8674 7.537715 AGAAGAGAATATACAGCATCGATCTG 58.462 38.462 17.77 17.77 37.56 2.90
5055 8681 9.545928 AGGATAAGAGAAGAGAATATACAGCAT 57.454 33.333 0.00 0.00 0.00 3.79
5093 8726 2.356382 CAGAGTAGCCGGTAGAACAGAG 59.644 54.545 1.90 0.00 0.00 3.35
5109 8742 2.629617 CCATGGCCAAGTTTTTCAGAGT 59.370 45.455 10.96 0.00 0.00 3.24
5169 8802 4.396478 GGAAAATGCAGTAGAGAGAAACCC 59.604 45.833 0.00 0.00 0.00 4.11
5196 8847 1.154150 GTGAATGCGCTTGACCAGC 60.154 57.895 9.73 0.00 46.31 4.85
5197 8848 0.957395 AGGTGAATGCGCTTGACCAG 60.957 55.000 22.52 0.00 43.05 4.00
5198 8849 0.955428 GAGGTGAATGCGCTTGACCA 60.955 55.000 22.52 9.19 43.05 4.02
5199 8850 0.955428 TGAGGTGAATGCGCTTGACC 60.955 55.000 16.30 16.30 41.10 4.02
5200 8851 0.166814 GTGAGGTGAATGCGCTTGAC 59.833 55.000 9.73 4.78 0.00 3.18
5201 8852 0.035317 AGTGAGGTGAATGCGCTTGA 59.965 50.000 9.73 0.00 0.00 3.02
5202 8853 0.445436 GAGTGAGGTGAATGCGCTTG 59.555 55.000 9.73 0.00 0.00 4.01
5203 8854 0.035317 TGAGTGAGGTGAATGCGCTT 59.965 50.000 9.73 0.00 0.00 4.68
5204 8855 0.035317 TTGAGTGAGGTGAATGCGCT 59.965 50.000 9.73 0.00 0.00 5.92
5205 8856 0.445436 CTTGAGTGAGGTGAATGCGC 59.555 55.000 0.00 0.00 0.00 6.09
5206 8857 0.445436 GCTTGAGTGAGGTGAATGCG 59.555 55.000 0.00 0.00 0.00 4.73
5207 8858 1.527034 TGCTTGAGTGAGGTGAATGC 58.473 50.000 0.00 0.00 0.00 3.56
5208 8859 2.880268 TGTTGCTTGAGTGAGGTGAATG 59.120 45.455 0.00 0.00 0.00 2.67
5209 8860 3.213206 TGTTGCTTGAGTGAGGTGAAT 57.787 42.857 0.00 0.00 0.00 2.57
5210 8861 2.708216 TGTTGCTTGAGTGAGGTGAA 57.292 45.000 0.00 0.00 0.00 3.18
5211 8862 2.564771 CTTGTTGCTTGAGTGAGGTGA 58.435 47.619 0.00 0.00 0.00 4.02
5230 8881 0.179029 AAACTAGGGCACAACACGCT 60.179 50.000 0.00 0.00 0.00 5.07
5247 8898 4.895297 AGAGAAACCAAAAGAGATGGCAAA 59.105 37.500 0.00 0.00 41.89 3.68
5252 8979 7.158021 ACACTAGAGAGAAACCAAAAGAGATG 58.842 38.462 0.00 0.00 0.00 2.90
5253 8980 7.309770 ACACTAGAGAGAAACCAAAAGAGAT 57.690 36.000 0.00 0.00 0.00 2.75
5254 8981 6.732896 ACACTAGAGAGAAACCAAAAGAGA 57.267 37.500 0.00 0.00 0.00 3.10
5255 8982 9.495572 AAATACACTAGAGAGAAACCAAAAGAG 57.504 33.333 0.00 0.00 0.00 2.85
5256 8983 9.847224 AAAATACACTAGAGAGAAACCAAAAGA 57.153 29.630 0.00 0.00 0.00 2.52
5280 9007 1.524848 TAAGCACGCGATGGGAAAAA 58.475 45.000 15.93 0.00 0.00 1.94
5281 9008 1.745232 ATAAGCACGCGATGGGAAAA 58.255 45.000 15.93 0.00 0.00 2.29
5282 9009 2.159014 ACTATAAGCACGCGATGGGAAA 60.159 45.455 15.93 0.00 0.00 3.13
5283 9010 1.411246 ACTATAAGCACGCGATGGGAA 59.589 47.619 15.93 0.00 0.00 3.97
5284 9011 1.037493 ACTATAAGCACGCGATGGGA 58.963 50.000 15.93 0.00 0.00 4.37
5285 9012 1.865865 AACTATAAGCACGCGATGGG 58.134 50.000 15.93 0.00 0.00 4.00
5286 9013 2.607635 ACAAACTATAAGCACGCGATGG 59.392 45.455 15.93 2.40 0.00 3.51
5287 9014 3.062099 ACACAAACTATAAGCACGCGATG 59.938 43.478 15.93 8.90 0.00 3.84
5288 9015 3.062099 CACACAAACTATAAGCACGCGAT 59.938 43.478 15.93 0.00 0.00 4.58
5289 9016 2.410392 CACACAAACTATAAGCACGCGA 59.590 45.455 15.93 0.00 0.00 5.87
5290 9017 2.473868 CCACACAAACTATAAGCACGCG 60.474 50.000 3.53 3.53 0.00 6.01
5291 9018 2.727916 GCCACACAAACTATAAGCACGC 60.728 50.000 0.00 0.00 0.00 5.34
5292 9019 2.482336 TGCCACACAAACTATAAGCACG 59.518 45.455 0.00 0.00 0.00 5.34
5293 9020 3.751175 TCTGCCACACAAACTATAAGCAC 59.249 43.478 0.00 0.00 0.00 4.40
5294 9021 3.751175 GTCTGCCACACAAACTATAAGCA 59.249 43.478 0.00 0.00 0.00 3.91
5295 9022 4.003648 AGTCTGCCACACAAACTATAAGC 58.996 43.478 0.00 0.00 0.00 3.09
5296 9023 5.470098 ACAAGTCTGCCACACAAACTATAAG 59.530 40.000 0.00 0.00 0.00 1.73
5297 9024 5.373222 ACAAGTCTGCCACACAAACTATAA 58.627 37.500 0.00 0.00 0.00 0.98
5298 9025 4.968259 ACAAGTCTGCCACACAAACTATA 58.032 39.130 0.00 0.00 0.00 1.31
5299 9026 3.820557 ACAAGTCTGCCACACAAACTAT 58.179 40.909 0.00 0.00 0.00 2.12
5300 9027 3.275617 ACAAGTCTGCCACACAAACTA 57.724 42.857 0.00 0.00 0.00 2.24
5301 9028 2.128771 ACAAGTCTGCCACACAAACT 57.871 45.000 0.00 0.00 0.00 2.66
5302 9029 2.939460 AACAAGTCTGCCACACAAAC 57.061 45.000 0.00 0.00 0.00 2.93
5303 9030 2.159448 CGAAACAAGTCTGCCACACAAA 60.159 45.455 0.00 0.00 0.00 2.83
5304 9031 1.400142 CGAAACAAGTCTGCCACACAA 59.600 47.619 0.00 0.00 0.00 3.33
5305 9032 1.013596 CGAAACAAGTCTGCCACACA 58.986 50.000 0.00 0.00 0.00 3.72
5306 9033 1.261619 CTCGAAACAAGTCTGCCACAC 59.738 52.381 0.00 0.00 0.00 3.82
5307 9034 1.581934 CTCGAAACAAGTCTGCCACA 58.418 50.000 0.00 0.00 0.00 4.17
5308 9035 0.868406 CCTCGAAACAAGTCTGCCAC 59.132 55.000 0.00 0.00 0.00 5.01
5309 9036 0.884704 GCCTCGAAACAAGTCTGCCA 60.885 55.000 0.00 0.00 0.00 4.92
5310 9037 1.869690 GCCTCGAAACAAGTCTGCC 59.130 57.895 0.00 0.00 0.00 4.85
5311 9038 0.944311 TCGCCTCGAAACAAGTCTGC 60.944 55.000 0.00 0.00 31.06 4.26
5312 9039 1.063806 CTCGCCTCGAAACAAGTCTG 58.936 55.000 0.00 0.00 34.74 3.51
5313 9040 0.038159 CCTCGCCTCGAAACAAGTCT 60.038 55.000 0.00 0.00 34.74 3.24
5314 9041 0.319641 ACCTCGCCTCGAAACAAGTC 60.320 55.000 0.00 0.00 34.74 3.01
5315 9042 0.106149 AACCTCGCCTCGAAACAAGT 59.894 50.000 0.00 0.00 34.74 3.16
5316 9043 1.069906 CAAACCTCGCCTCGAAACAAG 60.070 52.381 0.00 0.00 34.74 3.16
5317 9044 0.941542 CAAACCTCGCCTCGAAACAA 59.058 50.000 0.00 0.00 34.74 2.83
5318 9045 0.105224 TCAAACCTCGCCTCGAAACA 59.895 50.000 0.00 0.00 34.74 2.83
5319 9046 0.511653 GTCAAACCTCGCCTCGAAAC 59.488 55.000 0.00 0.00 34.74 2.78
5320 9047 0.391597 AGTCAAACCTCGCCTCGAAA 59.608 50.000 0.00 0.00 34.74 3.46
5321 9048 0.319555 CAGTCAAACCTCGCCTCGAA 60.320 55.000 0.00 0.00 34.74 3.71
5322 9049 1.289066 CAGTCAAACCTCGCCTCGA 59.711 57.895 0.00 0.00 0.00 4.04
5323 9050 2.383527 GCAGTCAAACCTCGCCTCG 61.384 63.158 0.00 0.00 0.00 4.63
5324 9051 1.004440 AGCAGTCAAACCTCGCCTC 60.004 57.895 0.00 0.00 0.00 4.70
5325 9052 1.302033 CAGCAGTCAAACCTCGCCT 60.302 57.895 0.00 0.00 0.00 5.52
5326 9053 2.970974 GCAGCAGTCAAACCTCGCC 61.971 63.158 0.00 0.00 0.00 5.54
5327 9054 1.963338 AGCAGCAGTCAAACCTCGC 60.963 57.895 0.00 0.00 0.00 5.03
5328 9055 0.882042 ACAGCAGCAGTCAAACCTCG 60.882 55.000 0.00 0.00 0.00 4.63
5329 9056 0.590195 CACAGCAGCAGTCAAACCTC 59.410 55.000 0.00 0.00 0.00 3.85
5330 9057 0.820891 CCACAGCAGCAGTCAAACCT 60.821 55.000 0.00 0.00 0.00 3.50
5331 9058 1.656441 CCACAGCAGCAGTCAAACC 59.344 57.895 0.00 0.00 0.00 3.27
5332 9059 1.008079 GCCACAGCAGCAGTCAAAC 60.008 57.895 0.00 0.00 39.53 2.93
5333 9060 1.152902 AGCCACAGCAGCAGTCAAA 60.153 52.632 0.00 0.00 43.56 2.69
5334 9061 1.895231 CAGCCACAGCAGCAGTCAA 60.895 57.895 0.00 0.00 43.56 3.18
5335 9062 2.281276 CAGCCACAGCAGCAGTCA 60.281 61.111 0.00 0.00 43.56 3.41
5336 9063 2.281345 ACAGCCACAGCAGCAGTC 60.281 61.111 0.00 0.00 43.56 3.51
5337 9064 2.593725 CACAGCCACAGCAGCAGT 60.594 61.111 0.00 0.00 43.56 4.40
5370 9097 3.009473 ACAGCAAGAGAGAGAGAGAGACT 59.991 47.826 0.00 0.00 0.00 3.24
5375 9102 4.423732 GCTTAACAGCAAGAGAGAGAGAG 58.576 47.826 0.00 0.00 46.49 3.20
5376 9103 4.448537 GCTTAACAGCAAGAGAGAGAGA 57.551 45.455 0.00 0.00 46.49 3.10
5402 9129 2.699954 ACTCATGACAAAGCGTAAGGG 58.300 47.619 0.00 0.00 38.28 3.95
5461 9188 2.284190 CTCGGCCTTTTCCTCTTCATC 58.716 52.381 0.00 0.00 0.00 2.92
5463 9190 0.324943 CCTCGGCCTTTTCCTCTTCA 59.675 55.000 0.00 0.00 0.00 3.02
5464 9191 0.613777 TCCTCGGCCTTTTCCTCTTC 59.386 55.000 0.00 0.00 0.00 2.87
5469 9196 0.391793 CTGTCTCCTCGGCCTTTTCC 60.392 60.000 0.00 0.00 0.00 3.13
5470 9197 0.608640 TCTGTCTCCTCGGCCTTTTC 59.391 55.000 0.00 0.00 0.00 2.29
5472 9199 1.878656 CGTCTGTCTCCTCGGCCTTT 61.879 60.000 0.00 0.00 0.00 3.11
5478 9225 0.241213 TTCAAGCGTCTGTCTCCTCG 59.759 55.000 0.00 0.00 0.00 4.63
5557 9313 2.203337 AATGTGGGTGCGCAGTGT 60.203 55.556 12.22 0.00 0.00 3.55
5697 9457 5.443230 AAGGTTACTAGAGTAGTACCGGT 57.557 43.478 13.98 13.98 40.74 5.28
5700 9460 6.376581 TGAGCAAAGGTTACTAGAGTAGTACC 59.623 42.308 0.00 3.30 40.74 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.