Multiple sequence alignment - TraesCS4D01G057500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G057500 chr4D 100.000 8421 0 0 1 8421 32487810 32496230 0.000000e+00 15551.0
1 TraesCS4D01G057500 chr4D 83.117 77 12 1 4913 4988 436910402 436910326 1.520000e-07 69.4
2 TraesCS4D01G057500 chr4B 94.246 6691 252 45 1 6654 47441418 47448012 0.000000e+00 10100.0
3 TraesCS4D01G057500 chr4B 94.235 503 19 4 6811 7305 47448338 47448838 0.000000e+00 760.0
4 TraesCS4D01G057500 chr4B 81.319 546 81 18 7785 8317 47494221 47494758 2.810000e-114 424.0
5 TraesCS4D01G057500 chr4B 95.541 157 7 0 6653 6809 47448094 47448250 1.400000e-62 252.0
6 TraesCS4D01G057500 chr4B 92.188 128 8 1 7407 7534 47449293 47449418 6.720000e-41 180.0
7 TraesCS4D01G057500 chr4B 85.714 84 11 1 8303 8386 47495658 47495740 4.190000e-13 87.9
8 TraesCS4D01G057500 chr4A 95.728 6273 212 24 1134 7387 569892379 569886144 0.000000e+00 10048.0
9 TraesCS4D01G057500 chr4A 88.338 746 73 10 1 746 569946605 569945874 0.000000e+00 883.0
10 TraesCS4D01G057500 chr4A 85.759 316 26 9 742 1041 569892899 569892587 4.910000e-82 316.0
11 TraesCS4D01G057500 chr4A 88.235 272 21 7 7388 7657 569886088 569885826 1.760000e-81 315.0
12 TraesCS4D01G057500 chr4A 84.049 326 38 4 8096 8421 569885091 569884780 1.370000e-77 302.0
13 TraesCS4D01G057500 chr5A 85.970 335 41 6 2512 2843 703428550 703428219 3.740000e-93 353.0
14 TraesCS4D01G057500 chr5A 84.375 96 14 1 4913 5007 688050669 688050764 9.000000e-15 93.5
15 TraesCS4D01G057500 chr5A 97.727 44 1 0 4913 4956 482123050 482123007 9.060000e-10 76.8
16 TraesCS4D01G057500 chrUn 86.833 281 19 9 4087 4361 479111990 479111722 1.780000e-76 298.0
17 TraesCS4D01G057500 chr7B 86.833 281 19 9 4087 4361 472333738 472334006 1.780000e-76 298.0
18 TraesCS4D01G057500 chr7B 86.833 281 19 9 4087 4361 472399221 472399489 1.780000e-76 298.0
19 TraesCS4D01G057500 chr7B 72.237 389 75 19 4 376 12419749 12419378 1.160000e-13 89.8
20 TraesCS4D01G057500 chr5B 85.512 283 38 3 2720 3002 681106555 681106834 8.270000e-75 292.0
21 TraesCS4D01G057500 chr5B 97.561 41 1 0 4913 4953 75218473 75218433 4.220000e-08 71.3
22 TraesCS4D01G057500 chr3B 85.563 284 22 5 4087 4361 104376978 104377251 6.440000e-71 279.0
23 TraesCS4D01G057500 chr3B 85.321 109 14 2 1283 1390 293739204 293739311 2.480000e-20 111.0
24 TraesCS4D01G057500 chr5D 85.211 284 23 5 4087 4361 18186134 18185861 2.990000e-69 274.0
25 TraesCS4D01G057500 chr1B 85.547 256 33 2 2512 2764 119894714 119894460 1.800000e-66 265.0
26 TraesCS4D01G057500 chr1B 84.507 284 25 5 4087 4361 637601746 637601473 6.480000e-66 263.0
27 TraesCS4D01G057500 chr2D 85.650 223 14 8 4089 4305 458168522 458168312 1.420000e-52 219.0
28 TraesCS4D01G057500 chr2D 83.000 100 14 3 4911 5009 426864531 426864628 4.190000e-13 87.9
29 TraesCS4D01G057500 chr3D 85.321 109 14 2 1283 1390 219560887 219560994 2.480000e-20 111.0
30 TraesCS4D01G057500 chr3D 95.652 46 2 0 4955 5000 107681075 107681120 3.260000e-09 75.0
31 TraesCS4D01G057500 chr2A 88.235 85 6 2 4913 4997 555338596 555338516 1.930000e-16 99.0
32 TraesCS4D01G057500 chr2B 85.714 91 13 0 4918 5008 799261534 799261444 6.960000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G057500 chr4D 32487810 32496230 8420 False 15551.00 15551 100.00000 1 8421 1 chr4D.!!$F1 8420
1 TraesCS4D01G057500 chr4B 47441418 47449418 8000 False 2823.00 10100 94.05250 1 7534 4 chr4B.!!$F1 7533
2 TraesCS4D01G057500 chr4B 47494221 47495740 1519 False 255.95 424 83.51650 7785 8386 2 chr4B.!!$F2 601
3 TraesCS4D01G057500 chr4A 569884780 569892899 8119 True 2745.25 10048 88.44275 742 8421 4 chr4A.!!$R2 7679
4 TraesCS4D01G057500 chr4A 569945874 569946605 731 True 883.00 883 88.33800 1 746 1 chr4A.!!$R1 745


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 363 0.542938 CTCGGGATCATGAGGGGCTA 60.543 60.000 0.09 0.0 0.00 3.93 F
1069 1108 0.249398 TCTAAAGTTCTGCGCTCCCC 59.751 55.000 9.73 0.0 0.00 4.81 F
1070 1109 0.744771 CTAAAGTTCTGCGCTCCCCC 60.745 60.000 9.73 0.0 0.00 5.40 F
2504 2660 0.815734 CCCTGTACGTGACCGATTCT 59.184 55.000 0.00 0.0 37.88 2.40 F
3388 3545 1.190833 CCAGCCTCTGTGTCTCCTGT 61.191 60.000 0.00 0.0 0.00 4.00 F
4067 4227 1.136305 TCGCGCTGCTCTTATACCTTT 59.864 47.619 5.56 0.0 0.00 3.11 F
4481 4649 0.892755 TTACAGTGCAGTACCCCGAG 59.107 55.000 0.00 0.0 0.00 4.63 F
6155 6353 1.236628 CATGCTATTCAGGAGGCAGC 58.763 55.000 0.00 0.0 38.11 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1442 1596 0.446222 CGAAACTGCCGGTTACATGG 59.554 55.000 1.90 0.00 37.12 3.66 R
2362 2518 0.889186 GTTCAACACCCTGTGGCGAT 60.889 55.000 0.00 0.00 37.94 4.58 R
2914 3071 1.411041 AGCCCATTCGGTCCTAGTAC 58.589 55.000 0.00 0.00 0.00 2.73 R
3530 3687 0.871722 GCAAATTTTGGAAACGCCCC 59.128 50.000 10.96 0.00 34.97 5.80 R
4394 4562 1.789078 CTTATGGCGGGTGCAGCATC 61.789 60.000 19.06 8.14 45.35 3.91 R
5505 5691 2.637382 TCAACTAGTTGCTGGACATGGA 59.363 45.455 27.49 6.49 40.24 3.41 R
6460 6659 2.373169 AGGAAGCATGACCTGTTGAAGA 59.627 45.455 0.00 0.00 34.99 2.87 R
7670 8841 0.175989 AAATCTCTCGGAAGACGGGC 59.824 55.000 0.00 0.00 44.66 6.13 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 4.786425 ACTAATCCAGATCTTCCAAAGCC 58.214 43.478 0.00 0.00 0.00 4.35
57 60 2.421248 CCAGATCTTCCAAAGCCTCCTC 60.421 54.545 0.00 0.00 0.00 3.71
58 61 2.504996 CAGATCTTCCAAAGCCTCCTCT 59.495 50.000 0.00 0.00 0.00 3.69
59 62 3.708631 CAGATCTTCCAAAGCCTCCTCTA 59.291 47.826 0.00 0.00 0.00 2.43
60 63 3.709141 AGATCTTCCAAAGCCTCCTCTAC 59.291 47.826 0.00 0.00 0.00 2.59
61 64 2.188817 TCTTCCAAAGCCTCCTCTACC 58.811 52.381 0.00 0.00 0.00 3.18
62 65 2.192263 CTTCCAAAGCCTCCTCTACCT 58.808 52.381 0.00 0.00 0.00 3.08
139 142 2.491693 CGTTTACGAGTGGTTACCCCTA 59.508 50.000 0.00 0.00 43.02 3.53
142 145 0.828677 ACGAGTGGTTACCCCTATGC 59.171 55.000 0.00 0.00 0.00 3.14
143 146 0.828022 CGAGTGGTTACCCCTATGCA 59.172 55.000 0.00 0.00 0.00 3.96
150 153 3.203263 TGGTTACCCCTATGCAAATGCTA 59.797 43.478 6.97 0.00 42.66 3.49
155 158 3.233507 CCCCTATGCAAATGCTACCAAT 58.766 45.455 6.97 0.00 42.66 3.16
165 168 5.712004 CAAATGCTACCAATGATGTTGTCA 58.288 37.500 0.00 0.00 42.06 3.58
238 241 3.562505 GCAAGTGCTTCATTCTTCAGTG 58.437 45.455 0.00 0.00 38.21 3.66
239 242 3.004106 GCAAGTGCTTCATTCTTCAGTGT 59.996 43.478 0.00 0.00 38.21 3.55
240 243 4.534168 CAAGTGCTTCATTCTTCAGTGTG 58.466 43.478 0.00 0.00 0.00 3.82
241 244 4.077300 AGTGCTTCATTCTTCAGTGTGA 57.923 40.909 0.00 0.00 0.00 3.58
250 253 2.135139 TCTTCAGTGTGATGTGAACGC 58.865 47.619 0.00 0.00 0.00 4.84
266 269 2.721231 GCTGTGGCGTTGCTTGAA 59.279 55.556 0.00 0.00 0.00 2.69
284 287 5.613577 GCTTGAACTTGATCTTGAGAACGAC 60.614 44.000 0.00 0.00 0.00 4.34
285 288 4.307432 TGAACTTGATCTTGAGAACGACC 58.693 43.478 0.00 0.00 0.00 4.79
286 289 4.039245 TGAACTTGATCTTGAGAACGACCT 59.961 41.667 0.00 0.00 0.00 3.85
287 290 4.608948 ACTTGATCTTGAGAACGACCTT 57.391 40.909 0.00 0.00 0.00 3.50
295 298 2.434359 GAACGACCTTGGGCCTCG 60.434 66.667 10.94 10.94 0.00 4.63
304 307 1.407437 CCTTGGGCCTCGATATATGGC 60.407 57.143 4.53 4.10 45.42 4.40
344 348 2.289002 GCTTGCCATTGATCTTACTCGG 59.711 50.000 0.00 0.00 0.00 4.63
359 363 0.542938 CTCGGGATCATGAGGGGCTA 60.543 60.000 0.09 0.00 0.00 3.93
411 415 1.730593 CGTACGCGGCTCGAGAAAAG 61.731 60.000 18.75 6.73 41.67 2.27
430 434 6.876257 AGAAAAGTGACTTGGATCAGTGATAC 59.124 38.462 8.55 8.55 32.42 2.24
461 465 2.500646 GGCAATGGGGCGAATTGG 59.499 61.111 11.33 0.00 35.88 3.16
498 502 1.076632 ACCGACCAAGCCAAACCAA 60.077 52.632 0.00 0.00 0.00 3.67
504 508 2.298729 GACCAAGCCAAACCAAATGCTA 59.701 45.455 0.00 0.00 32.82 3.49
519 523 8.310122 ACCAAATGCTAAAAATCTCACCATAT 57.690 30.769 0.00 0.00 0.00 1.78
548 552 2.840651 TCCCACCACAAAAACAATTGGT 59.159 40.909 10.83 0.00 43.39 3.67
601 605 7.731882 AGAAAGCTTAGTGAAGTTAAAGGAC 57.268 36.000 0.00 0.00 34.90 3.85
703 707 8.765219 ACTATTGATGCTTACTAACTAAATGCG 58.235 33.333 0.00 0.00 0.00 4.73
704 708 5.403897 TGATGCTTACTAACTAAATGCGC 57.596 39.130 0.00 0.00 0.00 6.09
803 810 4.336280 GACTTTAAGTGGGGATTGAAGCT 58.664 43.478 0.93 0.00 29.01 3.74
965 1004 1.613610 CCTCGTCCCCTCCTACTCA 59.386 63.158 0.00 0.00 0.00 3.41
1054 1093 1.219124 CGCTTCCTGCTGCCTCTAA 59.781 57.895 0.00 0.00 40.11 2.10
1065 1104 0.321671 TGCCTCTAAAGTTCTGCGCT 59.678 50.000 9.73 0.00 0.00 5.92
1069 1108 0.249398 TCTAAAGTTCTGCGCTCCCC 59.751 55.000 9.73 0.00 0.00 4.81
1070 1109 0.744771 CTAAAGTTCTGCGCTCCCCC 60.745 60.000 9.73 0.00 0.00 5.40
1143 1297 4.486503 CTGCCCCTCTGCCTCTGC 62.487 72.222 0.00 0.00 38.26 4.26
1173 1327 2.989824 CCACCGTCGGAGTGACCT 60.990 66.667 20.51 0.00 45.23 3.85
1442 1596 5.006746 CCGTATTTTGGTGCTGATACTTCTC 59.993 44.000 0.00 0.00 0.00 2.87
1643 1797 0.830444 TACTCGAGGTGGGTTGTGCT 60.830 55.000 18.41 0.00 0.00 4.40
1853 2007 9.482627 ACCTCTCTAAGCTTAATGATTATTTCG 57.517 33.333 7.74 0.00 0.00 3.46
1920 2074 7.108841 AGAAGTGTAGTGTCAGAGTTTGTTA 57.891 36.000 0.00 0.00 0.00 2.41
2057 2213 6.789262 GCAAATTGCTGAGCTTAATAGAAGA 58.211 36.000 11.19 0.00 40.96 2.87
2150 2306 5.308014 CTTGCTGCAAGTCCATATATGGTA 58.692 41.667 29.38 14.04 39.47 3.25
2176 2332 7.944554 ACAGGTATACCATTTATTTCCCATCTG 59.055 37.037 23.87 9.47 38.89 2.90
2362 2518 3.650647 GTGGAACCATCAAGAGGCA 57.349 52.632 0.00 0.00 0.00 4.75
2451 2607 4.131649 TGTCCATGTTATACCAAGACCG 57.868 45.455 0.00 0.00 0.00 4.79
2504 2660 0.815734 CCCTGTACGTGACCGATTCT 59.184 55.000 0.00 0.00 37.88 2.40
2511 2667 1.548719 ACGTGACCGATTCTGGAATCA 59.451 47.619 19.23 3.04 45.60 2.57
2593 2749 6.184789 TGGTTAACATGTATCCTCCTTTTCC 58.815 40.000 8.10 0.00 0.00 3.13
2664 2821 7.559590 ACATAGCTACTGAAAATCATGTTCC 57.440 36.000 0.00 0.00 0.00 3.62
2746 2903 3.456380 TGGGCCTCTGCTTCTTTTTAT 57.544 42.857 4.53 0.00 37.74 1.40
2755 2912 8.190784 GCCTCTGCTTCTTTTTATTGCTATAAA 58.809 33.333 8.94 8.94 33.23 1.40
2813 2970 5.522460 TGTATAGTCGTTGGCTAATGCTTTC 59.478 40.000 0.00 0.00 39.59 2.62
2860 3017 6.803154 ATTTGCTTCCTCTGTGTAACTTAC 57.197 37.500 0.00 0.00 38.04 2.34
2877 3034 5.018539 ACTTACGCAGATATGCCAGTTTA 57.981 39.130 6.76 0.00 0.00 2.01
2914 3071 7.046652 AGATGAAACACTATCCAGACATTCAG 58.953 38.462 0.00 0.00 0.00 3.02
2967 3124 3.131396 GACAAGACCTGTTAGTGGTGTG 58.869 50.000 0.00 0.00 38.84 3.82
3104 3261 4.155826 CCGAACTGAACCAAAGCAATATCA 59.844 41.667 0.00 0.00 0.00 2.15
3118 3275 6.552445 AGCAATATCACTAGGTGAGAACTT 57.448 37.500 6.53 0.00 46.04 2.66
3388 3545 1.190833 CCAGCCTCTGTGTCTCCTGT 61.191 60.000 0.00 0.00 0.00 4.00
3530 3687 1.419374 GACTTGCTACCTGTGACACG 58.581 55.000 0.22 0.00 0.00 4.49
3539 3696 2.589442 TGTGACACGGGGCGTTTC 60.589 61.111 0.22 0.00 38.32 2.78
3686 3845 2.696526 AGACCTGTACCTCTTGACCA 57.303 50.000 0.00 0.00 0.00 4.02
3815 3974 2.176889 CCTGGTATATACCTCCCCACG 58.823 57.143 28.12 10.70 46.58 4.94
4032 4192 7.849804 TCTCTAAGCAATTTATCAGGTTGAC 57.150 36.000 0.00 0.00 0.00 3.18
4049 4209 4.148891 GTTGACGAGCCTTTTGTAATTCG 58.851 43.478 0.00 0.00 0.00 3.34
4050 4210 2.158841 TGACGAGCCTTTTGTAATTCGC 59.841 45.455 0.00 0.00 0.00 4.70
4067 4227 1.136305 TCGCGCTGCTCTTATACCTTT 59.864 47.619 5.56 0.00 0.00 3.11
4207 4367 7.169308 CAGAGCACCCTAACAAGTTTATATACG 59.831 40.741 0.00 0.00 0.00 3.06
4371 4539 7.441760 TGTCCACGCTTGAGTTTTAGTAAATTA 59.558 33.333 0.00 0.00 0.00 1.40
4394 4562 2.988010 TGATTAGTGGCTAGTGGCTG 57.012 50.000 0.00 0.00 41.46 4.85
4479 4647 3.181469 ACATATTACAGTGCAGTACCCCG 60.181 47.826 0.00 0.00 0.00 5.73
4481 4649 0.892755 TTACAGTGCAGTACCCCGAG 59.107 55.000 0.00 0.00 0.00 4.63
4494 4662 5.064325 CAGTACCCCGAGTTTAGCATTTTAC 59.936 44.000 0.00 0.00 0.00 2.01
4602 4770 4.700213 CCTCGGTTGGATTCATGTAAGTTT 59.300 41.667 0.00 0.00 0.00 2.66
4635 4803 7.601886 ACAAATTGTTGTTGTTGACTGATCAAA 59.398 29.630 0.00 0.00 46.01 2.69
4669 4837 6.378280 AGACTTTTGAGTGTCCTGTTCATTTT 59.622 34.615 0.00 0.00 34.02 1.82
4670 4838 6.564328 ACTTTTGAGTGTCCTGTTCATTTTC 58.436 36.000 0.00 0.00 0.00 2.29
4871 5056 7.504926 AGTACTGTGAAAAGGGTCCATATTA 57.495 36.000 0.00 0.00 0.00 0.98
5186 5371 1.507140 TGAGCGGATGGGGTTATCTT 58.493 50.000 0.00 0.00 0.00 2.40
5202 5387 6.183360 GGGTTATCTTTTGGGAACTTGTTGAA 60.183 38.462 0.00 0.00 0.00 2.69
5477 5663 9.158233 GCCATACTTCTGTTGTAGTAATTGTTA 57.842 33.333 0.00 0.00 31.53 2.41
5586 5772 1.347707 CAGTAGTGGCCCAAAGTCTCA 59.652 52.381 0.00 0.00 0.00 3.27
5683 5869 9.844790 TTCTTATATGATTTTGCTTGACACAAG 57.155 29.630 7.07 7.07 0.00 3.16
5697 5883 6.238484 GCTTGACACAAGTATCTTGAAACTGT 60.238 38.462 15.04 9.14 0.00 3.55
5830 6026 4.842380 ACCTAAAGTAGAAGGGTTAGTGCA 59.158 41.667 0.00 0.00 37.18 4.57
6129 6327 1.364269 ATGAACGTTTGGGAGGGGTA 58.636 50.000 0.46 0.00 0.00 3.69
6155 6353 1.236628 CATGCTATTCAGGAGGCAGC 58.763 55.000 0.00 0.00 38.11 5.25
6168 6366 2.359850 GCAGCGGTGGGTGATTCA 60.360 61.111 17.54 0.00 44.37 2.57
6188 6386 4.854173 TCATAATTTACAGCAAGCCTGGA 58.146 39.130 0.00 0.00 46.14 3.86
6256 6454 3.322254 CCTTTAGATGTGGATAGCCGAGT 59.678 47.826 0.00 0.00 36.79 4.18
6257 6455 4.551388 CTTTAGATGTGGATAGCCGAGTC 58.449 47.826 0.00 0.00 36.79 3.36
6394 6592 2.408050 ACTGCTTGCTTCTTACGAGTG 58.592 47.619 0.00 0.00 0.00 3.51
6427 6626 6.992063 AACTACTCCAGCAAATCATTAGTG 57.008 37.500 0.00 0.00 0.00 2.74
6460 6659 2.106566 TCCTGTGTTTGGCATTGTTGT 58.893 42.857 0.00 0.00 0.00 3.32
6462 6661 2.101249 CCTGTGTTTGGCATTGTTGTCT 59.899 45.455 0.00 0.00 0.00 3.41
6728 7011 8.510243 AATCTGCAAATGATTATGTAGACACA 57.490 30.769 9.07 0.00 40.33 3.72
6779 7062 1.938585 TCCTCGGTCCTCAGTTTCAT 58.061 50.000 0.00 0.00 0.00 2.57
6843 7212 5.241506 TGTTGCTTAATCCTTCCTGAAACAG 59.758 40.000 0.00 0.00 0.00 3.16
6879 7248 3.812609 ACGCATACTGTTGTTCATTGTCA 59.187 39.130 0.00 0.00 0.00 3.58
6948 7317 9.639563 AGACGATCTCATGATAATGGTCTATAT 57.360 33.333 23.01 9.09 32.45 0.86
7157 7526 2.625737 CGTGTGAGCCTGATTCTGATT 58.374 47.619 0.00 0.00 0.00 2.57
7298 7675 3.412237 TGCCTCTTTGGTAACCACTAC 57.588 47.619 0.00 0.00 38.35 2.73
7323 8047 5.871524 GCAGAGTGAGTTCTCATGTCATTTA 59.128 40.000 5.80 0.00 36.97 1.40
7324 8048 6.538021 GCAGAGTGAGTTCTCATGTCATTTAT 59.462 38.462 5.80 0.00 36.97 1.40
7327 8051 8.944029 AGAGTGAGTTCTCATGTCATTTATTTG 58.056 33.333 5.80 0.00 36.97 2.32
7353 8077 3.503748 GGGGAACAAAGAGACATTCACAG 59.496 47.826 0.00 0.00 0.00 3.66
7381 8105 5.526115 TGATTGCTTGCAAAAAGAGAGAAG 58.474 37.500 12.17 0.00 0.00 2.85
7434 8216 2.946329 TGCACGTGGTTCTTTACATTGT 59.054 40.909 18.88 0.00 0.00 2.71
7435 8217 3.378742 TGCACGTGGTTCTTTACATTGTT 59.621 39.130 18.88 0.00 0.00 2.83
7438 8220 5.289917 GCACGTGGTTCTTTACATTGTTTTT 59.710 36.000 18.88 0.00 0.00 1.94
7473 8255 5.222631 GTTCCTTTGCACTTCGATGATTTT 58.777 37.500 5.16 0.00 0.00 1.82
7476 8258 4.082571 CCTTTGCACTTCGATGATTTTCCT 60.083 41.667 5.16 0.00 0.00 3.36
7507 8289 3.591196 TGCACTTGATATTTTGCCACC 57.409 42.857 0.00 0.00 33.86 4.61
7512 8294 5.111293 CACTTGATATTTTGCCACCCATTC 58.889 41.667 0.00 0.00 0.00 2.67
7534 8316 4.649674 TCCCTAGATAGCTGTAGTTTGGTG 59.350 45.833 0.00 0.00 0.00 4.17
7535 8317 4.202264 CCCTAGATAGCTGTAGTTTGGTGG 60.202 50.000 0.00 0.00 0.00 4.61
7536 8318 4.649674 CCTAGATAGCTGTAGTTTGGTGGA 59.350 45.833 0.00 0.00 0.00 4.02
7537 8319 5.128827 CCTAGATAGCTGTAGTTTGGTGGAA 59.871 44.000 0.00 0.00 0.00 3.53
7538 8320 5.700402 AGATAGCTGTAGTTTGGTGGAAT 57.300 39.130 0.00 0.00 0.00 3.01
7539 8321 6.067217 AGATAGCTGTAGTTTGGTGGAATT 57.933 37.500 0.00 0.00 0.00 2.17
7540 8322 6.116126 AGATAGCTGTAGTTTGGTGGAATTC 58.884 40.000 0.00 0.00 0.00 2.17
7541 8323 3.421844 AGCTGTAGTTTGGTGGAATTCC 58.578 45.455 18.17 18.17 0.00 3.01
7542 8324 3.074538 AGCTGTAGTTTGGTGGAATTCCT 59.925 43.478 24.73 5.74 36.82 3.36
7543 8325 4.288626 AGCTGTAGTTTGGTGGAATTCCTA 59.711 41.667 24.73 9.10 36.82 2.94
7544 8326 4.636206 GCTGTAGTTTGGTGGAATTCCTAG 59.364 45.833 24.73 8.62 36.82 3.02
7545 8327 5.803470 GCTGTAGTTTGGTGGAATTCCTAGT 60.803 44.000 24.73 10.34 36.82 2.57
7546 8328 6.195600 TGTAGTTTGGTGGAATTCCTAGTT 57.804 37.500 24.73 7.21 36.82 2.24
7547 8329 6.607019 TGTAGTTTGGTGGAATTCCTAGTTT 58.393 36.000 24.73 7.68 36.82 2.66
7548 8330 6.488683 TGTAGTTTGGTGGAATTCCTAGTTTG 59.511 38.462 24.73 0.00 36.82 2.93
7549 8331 4.832823 AGTTTGGTGGAATTCCTAGTTTGG 59.167 41.667 24.73 0.00 36.82 3.28
7550 8332 4.463050 TTGGTGGAATTCCTAGTTTGGT 57.537 40.909 24.73 0.00 36.82 3.67
7573 8368 7.711339 TGGTTTGGTAAACAATTGGTTATCAAC 59.289 33.333 32.00 25.92 45.02 3.18
7576 8371 6.239629 TTGGTAAACAATTGGTTATCAACCCC 60.240 38.462 29.62 19.80 41.76 4.95
7582 8377 1.153025 GGTTATCAACCCCGGAGCC 60.153 63.158 0.73 0.00 46.12 4.70
7645 8440 3.308402 GGTCAACCATGAGGAGGATGAAA 60.308 47.826 0.00 0.00 39.28 2.69
7646 8441 3.944015 GTCAACCATGAGGAGGATGAAAG 59.056 47.826 0.00 0.00 39.28 2.62
7648 8443 4.289410 TCAACCATGAGGAGGATGAAAGAA 59.711 41.667 0.00 0.00 35.35 2.52
7657 8828 1.032114 GGATGAAAGAAGGCCACGGG 61.032 60.000 5.01 0.00 0.00 5.28
7668 8839 4.697756 CCACGGGCTCGCTTTCCA 62.698 66.667 5.51 0.00 40.63 3.53
7669 8840 2.436646 CACGGGCTCGCTTTCCAT 60.437 61.111 5.51 0.00 40.63 3.41
7670 8841 2.436646 ACGGGCTCGCTTTCCATG 60.437 61.111 5.51 0.00 40.63 3.66
7671 8842 3.880846 CGGGCTCGCTTTCCATGC 61.881 66.667 0.00 0.00 0.00 4.06
7672 8843 3.521796 GGGCTCGCTTTCCATGCC 61.522 66.667 0.00 0.00 42.56 4.40
7673 8844 3.521796 GGCTCGCTTTCCATGCCC 61.522 66.667 0.00 0.00 37.81 5.36
7674 8845 3.880846 GCTCGCTTTCCATGCCCG 61.881 66.667 0.00 0.00 0.00 6.13
7675 8846 2.436646 CTCGCTTTCCATGCCCGT 60.437 61.111 0.00 0.00 0.00 5.28
7676 8847 2.435938 TCGCTTTCCATGCCCGTC 60.436 61.111 0.00 0.00 0.00 4.79
7677 8848 2.436646 CGCTTTCCATGCCCGTCT 60.437 61.111 0.00 0.00 0.00 4.18
7678 8849 2.040544 CGCTTTCCATGCCCGTCTT 61.041 57.895 0.00 0.00 0.00 3.01
7679 8850 1.803289 GCTTTCCATGCCCGTCTTC 59.197 57.895 0.00 0.00 0.00 2.87
7680 8851 1.657751 GCTTTCCATGCCCGTCTTCC 61.658 60.000 0.00 0.00 0.00 3.46
7681 8852 1.369091 CTTTCCATGCCCGTCTTCCG 61.369 60.000 0.00 0.00 0.00 4.30
7682 8853 1.832719 TTTCCATGCCCGTCTTCCGA 61.833 55.000 0.00 0.00 39.56 4.55
7683 8854 2.202932 CCATGCCCGTCTTCCGAG 60.203 66.667 0.00 0.00 39.56 4.63
7684 8855 2.721167 CCATGCCCGTCTTCCGAGA 61.721 63.158 0.00 0.00 39.56 4.04
7685 8856 1.227089 CATGCCCGTCTTCCGAGAG 60.227 63.158 0.00 0.00 39.56 3.20
7686 8857 1.379977 ATGCCCGTCTTCCGAGAGA 60.380 57.895 0.00 0.00 39.56 3.10
7687 8858 0.757188 ATGCCCGTCTTCCGAGAGAT 60.757 55.000 0.00 0.00 39.56 2.75
7688 8859 0.970937 TGCCCGTCTTCCGAGAGATT 60.971 55.000 0.00 0.00 39.56 2.40
7689 8860 0.175989 GCCCGTCTTCCGAGAGATTT 59.824 55.000 0.00 0.00 39.56 2.17
7690 8861 1.927895 CCCGTCTTCCGAGAGATTTG 58.072 55.000 0.00 0.00 39.56 2.32
7691 8862 1.471676 CCCGTCTTCCGAGAGATTTGG 60.472 57.143 0.00 0.00 39.56 3.28
7692 8863 1.476891 CCGTCTTCCGAGAGATTTGGA 59.523 52.381 0.00 0.00 39.56 3.53
7693 8864 2.094182 CCGTCTTCCGAGAGATTTGGAA 60.094 50.000 0.00 0.00 45.43 3.53
7694 8865 3.430929 CCGTCTTCCGAGAGATTTGGAAT 60.431 47.826 0.00 0.00 46.22 3.01
7695 8866 3.553511 CGTCTTCCGAGAGATTTGGAATG 59.446 47.826 0.00 0.00 46.22 2.67
7696 8867 4.678044 CGTCTTCCGAGAGATTTGGAATGA 60.678 45.833 0.00 0.00 46.22 2.57
7697 8868 5.178797 GTCTTCCGAGAGATTTGGAATGAA 58.821 41.667 0.00 0.00 46.22 2.57
7698 8869 5.293079 GTCTTCCGAGAGATTTGGAATGAAG 59.707 44.000 0.00 0.00 46.22 3.02
7699 8870 5.187772 TCTTCCGAGAGATTTGGAATGAAGA 59.812 40.000 0.00 0.00 46.22 2.87
7700 8871 5.620738 TCCGAGAGATTTGGAATGAAGAT 57.379 39.130 0.00 0.00 36.35 2.40
7701 8872 6.731292 TCCGAGAGATTTGGAATGAAGATA 57.269 37.500 0.00 0.00 36.35 1.98
7702 8873 6.753180 TCCGAGAGATTTGGAATGAAGATAG 58.247 40.000 0.00 0.00 36.35 2.08
7703 8874 6.325028 TCCGAGAGATTTGGAATGAAGATAGT 59.675 38.462 0.00 0.00 36.35 2.12
7704 8875 6.644592 CCGAGAGATTTGGAATGAAGATAGTC 59.355 42.308 0.00 0.00 31.06 2.59
7722 8893 8.707796 AGATAGTCTTCCGGAAAATATCTACA 57.292 34.615 28.22 6.35 30.96 2.74
7723 8894 9.144298 AGATAGTCTTCCGGAAAATATCTACAA 57.856 33.333 28.22 5.93 30.96 2.41
7750 8921 7.099266 CCATCAATTAGTTTGGCTAACATCA 57.901 36.000 14.00 0.00 41.93 3.07
7768 8939 3.358111 TCAGAAGAGAGATGGAGTCGT 57.642 47.619 0.00 0.00 0.00 4.34
7776 8947 3.537580 AGAGATGGAGTCGTAGAGTGTC 58.462 50.000 0.00 0.00 42.24 3.67
7778 8949 2.008329 GATGGAGTCGTAGAGTGTCGT 58.992 52.381 0.00 0.00 42.24 4.34
7789 9123 1.816863 GAGTGTCGTGGAGGCCAAGA 61.817 60.000 5.01 0.00 39.51 3.02
7840 9178 2.094752 CCCCTAAATGTTTGAACTGCGG 60.095 50.000 0.00 0.00 0.00 5.69
7842 9180 2.817258 CCTAAATGTTTGAACTGCGGGA 59.183 45.455 0.00 0.00 0.00 5.14
7847 9185 0.168128 GTTTGAACTGCGGGATTCGG 59.832 55.000 0.00 0.00 39.69 4.30
7897 9235 1.098050 AAATGTCCGCAGAGCAATCC 58.902 50.000 0.00 0.00 0.00 3.01
7899 9237 0.463295 ATGTCCGCAGAGCAATCCAG 60.463 55.000 0.00 0.00 0.00 3.86
7901 9239 1.086634 GTCCGCAGAGCAATCCAGTC 61.087 60.000 0.00 0.00 0.00 3.51
7915 9253 1.275291 TCCAGTCGTCTGAAATCCCAC 59.725 52.381 11.41 0.00 43.76 4.61
7919 9257 3.058914 CAGTCGTCTGAAATCCCACAAAC 60.059 47.826 3.36 0.00 43.76 2.93
7924 9262 2.041081 TCTGAAATCCCACAAACCGGAT 59.959 45.455 9.46 0.00 40.75 4.18
7925 9263 2.164219 CTGAAATCCCACAAACCGGATG 59.836 50.000 9.46 9.74 38.91 3.51
7934 9272 3.142951 CACAAACCGGATGTAAACCTGA 58.857 45.455 9.46 0.00 0.00 3.86
7937 9275 1.946984 ACCGGATGTAAACCTGAGGA 58.053 50.000 9.46 0.00 0.00 3.71
7939 9277 2.640826 ACCGGATGTAAACCTGAGGAAA 59.359 45.455 9.46 0.00 0.00 3.13
7943 9281 5.883673 CCGGATGTAAACCTGAGGAAATTTA 59.116 40.000 4.99 0.00 0.00 1.40
7945 9283 6.458342 CGGATGTAAACCTGAGGAAATTTAGC 60.458 42.308 4.99 0.00 0.00 3.09
7946 9284 5.873179 TGTAAACCTGAGGAAATTTAGCG 57.127 39.130 4.99 0.00 0.00 4.26
7948 9286 3.713826 AACCTGAGGAAATTTAGCGGA 57.286 42.857 4.99 0.00 0.00 5.54
7949 9287 3.268023 ACCTGAGGAAATTTAGCGGAG 57.732 47.619 4.99 0.00 0.00 4.63
7950 9288 2.572104 ACCTGAGGAAATTTAGCGGAGT 59.428 45.455 4.99 0.00 0.00 3.85
7951 9289 3.198872 CCTGAGGAAATTTAGCGGAGTC 58.801 50.000 0.00 0.00 0.00 3.36
7952 9290 2.860735 CTGAGGAAATTTAGCGGAGTCG 59.139 50.000 0.00 0.00 39.81 4.18
7953 9291 2.494471 TGAGGAAATTTAGCGGAGTCGA 59.506 45.455 0.00 0.00 39.00 4.20
7961 9301 0.743701 TAGCGGAGTCGAGACAGTCC 60.744 60.000 5.99 4.02 39.00 3.85
7962 9302 2.041686 GCGGAGTCGAGACAGTCCT 61.042 63.158 5.99 0.00 39.00 3.85
7971 9311 2.116983 GAGACAGTCCTGCTTGGCCA 62.117 60.000 0.00 0.00 35.26 5.36
7972 9312 1.968540 GACAGTCCTGCTTGGCCAC 60.969 63.158 3.88 0.00 35.26 5.01
7973 9313 2.403132 GACAGTCCTGCTTGGCCACT 62.403 60.000 3.88 0.00 35.26 4.00
7974 9314 1.970114 CAGTCCTGCTTGGCCACTG 60.970 63.158 3.88 3.42 35.31 3.66
7975 9315 2.113986 GTCCTGCTTGGCCACTGT 59.886 61.111 3.88 0.00 35.26 3.55
7976 9316 1.968540 GTCCTGCTTGGCCACTGTC 60.969 63.158 3.88 0.00 35.26 3.51
7977 9317 2.113774 CCTGCTTGGCCACTGTCA 59.886 61.111 3.88 0.00 0.00 3.58
7978 9318 1.970114 CCTGCTTGGCCACTGTCAG 60.970 63.158 3.88 10.29 0.00 3.51
7979 9319 1.228063 CTGCTTGGCCACTGTCAGT 60.228 57.895 3.88 0.00 0.00 3.41
7981 9321 0.819259 TGCTTGGCCACTGTCAGTTC 60.819 55.000 3.88 0.00 0.00 3.01
7982 9322 1.845809 GCTTGGCCACTGTCAGTTCG 61.846 60.000 3.88 0.00 0.00 3.95
7983 9323 0.249868 CTTGGCCACTGTCAGTTCGA 60.250 55.000 3.88 0.00 0.00 3.71
7984 9324 0.531974 TTGGCCACTGTCAGTTCGAC 60.532 55.000 3.88 0.00 45.61 4.20
7985 9325 1.367840 GGCCACTGTCAGTTCGACT 59.632 57.895 1.67 0.00 45.60 4.18
7986 9326 0.601558 GGCCACTGTCAGTTCGACTA 59.398 55.000 1.67 0.00 45.60 2.59
7987 9327 1.669211 GGCCACTGTCAGTTCGACTAC 60.669 57.143 1.67 0.00 45.60 2.73
7988 9328 1.000607 GCCACTGTCAGTTCGACTACA 60.001 52.381 1.67 0.00 45.60 2.74
7989 9329 2.352814 GCCACTGTCAGTTCGACTACAT 60.353 50.000 1.67 0.00 45.60 2.29
7990 9330 3.245797 CCACTGTCAGTTCGACTACATG 58.754 50.000 1.67 0.00 45.60 3.21
7991 9331 3.305403 CCACTGTCAGTTCGACTACATGT 60.305 47.826 1.67 2.69 45.60 3.21
7992 9332 4.299155 CACTGTCAGTTCGACTACATGTT 58.701 43.478 2.30 0.00 45.60 2.71
7993 9333 4.383052 CACTGTCAGTTCGACTACATGTTC 59.617 45.833 2.30 0.00 45.60 3.18
7994 9334 4.278669 ACTGTCAGTTCGACTACATGTTCT 59.721 41.667 2.30 0.00 45.60 3.01
7995 9335 5.196341 TGTCAGTTCGACTACATGTTCTT 57.804 39.130 2.30 0.00 45.60 2.52
7996 9336 6.016527 ACTGTCAGTTCGACTACATGTTCTTA 60.017 38.462 2.30 0.00 45.60 2.10
8009 9349 5.126067 ACATGTTCTTATAGTCCATGTGCC 58.874 41.667 0.00 0.00 43.16 5.01
8011 9351 4.769688 TGTTCTTATAGTCCATGTGCCTG 58.230 43.478 0.00 0.00 0.00 4.85
8012 9352 4.130118 GTTCTTATAGTCCATGTGCCTGG 58.870 47.826 0.00 0.00 37.66 4.45
8013 9353 2.104792 TCTTATAGTCCATGTGCCTGGC 59.895 50.000 12.87 12.87 36.16 4.85
8016 9356 0.326143 TAGTCCATGTGCCTGGCCTA 60.326 55.000 17.53 5.22 36.16 3.93
8018 9358 2.124151 CCATGTGCCTGGCCTACC 60.124 66.667 17.53 1.94 0.00 3.18
8019 9359 2.514592 CATGTGCCTGGCCTACCG 60.515 66.667 17.53 0.00 39.70 4.02
8045 9410 2.290323 GGCCGGATTTGATGCCTAGTAT 60.290 50.000 5.05 0.00 40.77 2.12
8058 9423 6.652062 TGATGCCTAGTATTTGATGCATACAG 59.348 38.462 0.00 0.00 39.36 2.74
8065 9430 7.268199 AGTATTTGATGCATACAGTTGGATG 57.732 36.000 0.00 0.00 30.55 3.51
8068 9433 4.492494 TGATGCATACAGTTGGATGAGT 57.508 40.909 8.51 0.00 0.00 3.41
8070 9435 3.979101 TGCATACAGTTGGATGAGTGA 57.021 42.857 8.51 0.00 0.00 3.41
8071 9436 3.599343 TGCATACAGTTGGATGAGTGAC 58.401 45.455 8.51 0.00 0.00 3.67
8076 9441 2.564947 ACAGTTGGATGAGTGACTCTCC 59.435 50.000 14.42 16.78 42.12 3.71
8077 9442 2.830923 CAGTTGGATGAGTGACTCTCCT 59.169 50.000 22.61 7.38 42.12 3.69
8078 9443 4.019858 CAGTTGGATGAGTGACTCTCCTA 58.980 47.826 22.61 16.45 42.12 2.94
8083 9448 2.581216 TGAGTGACTCTCCTACCGTT 57.419 50.000 14.42 0.00 42.12 4.44
8089 9454 2.696707 TGACTCTCCTACCGTTGTTGTT 59.303 45.455 0.00 0.00 0.00 2.83
8172 9537 4.407296 TGGAGTTGCCCTAAACATTTTGTT 59.593 37.500 0.00 0.00 37.87 2.83
8174 9539 5.452636 GGAGTTGCCCTAAACATTTTGTTGA 60.453 40.000 0.00 0.00 40.14 3.18
8238 9603 7.606456 TCTCACTTTGTACACACTTTTCTTTCT 59.394 33.333 0.00 0.00 0.00 2.52
8285 9651 6.394025 AAACTTACCGTTGCTATGGAAAAA 57.606 33.333 13.67 3.90 35.61 1.94
8311 10591 8.947115 ACATTTAGAAGTAGATTAAAGTGTGCC 58.053 33.333 0.00 0.00 0.00 5.01
8317 10597 6.552445 AGTAGATTAAAGTGTGCCAGAGAT 57.448 37.500 0.00 0.00 0.00 2.75
8318 10598 7.661536 AGTAGATTAAAGTGTGCCAGAGATA 57.338 36.000 0.00 0.00 0.00 1.98
8326 10606 6.992664 AAGTGTGCCAGAGATATAAGATCT 57.007 37.500 0.00 0.00 0.00 2.75
8327 10607 6.992664 AGTGTGCCAGAGATATAAGATCTT 57.007 37.500 13.56 13.56 0.00 2.40
8331 10611 7.384660 GTGTGCCAGAGATATAAGATCTTTGAG 59.615 40.741 14.36 0.15 33.57 3.02
8360 10640 3.119280 TGACGAACCGAGCAATCTTGATA 60.119 43.478 0.00 0.00 0.00 2.15
8375 10655 9.049523 GCAATCTTGATATGATGTACTTTCTCA 57.950 33.333 0.00 0.00 0.00 3.27
8390 10670 8.836413 TGTACTTTCTCAGTTCCAAAATACTTG 58.164 33.333 0.00 0.00 36.88 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.834549 TCAAGAGGTAGAGGAGGCTTTG 59.165 50.000 0.00 0.00 0.00 2.77
58 61 8.705594 CTCTTGTATTAAATCCCTCAAGAGGTA 58.294 37.037 18.83 0.00 46.83 3.08
59 62 7.569240 CTCTTGTATTAAATCCCTCAAGAGGT 58.431 38.462 18.83 0.00 46.83 3.85
62 65 8.146053 TGACTCTTGTATTAAATCCCTCAAGA 57.854 34.615 0.00 0.00 38.84 3.02
71 74 8.827177 TCACTCGTTTGACTCTTGTATTAAAT 57.173 30.769 0.00 0.00 0.00 1.40
139 142 5.113383 CAACATCATTGGTAGCATTTGCAT 58.887 37.500 5.20 0.00 45.16 3.96
142 145 5.712004 TGACAACATCATTGGTAGCATTTG 58.288 37.500 0.00 0.00 29.99 2.32
143 146 5.477984 ACTGACAACATCATTGGTAGCATTT 59.522 36.000 0.00 0.00 36.48 2.32
150 153 3.415212 CCTCACTGACAACATCATTGGT 58.585 45.455 0.00 0.00 38.29 3.67
155 158 0.678950 TCGCCTCACTGACAACATCA 59.321 50.000 0.00 0.00 35.45 3.07
165 168 3.764434 TGAAAACTCTAGATCGCCTCACT 59.236 43.478 0.00 0.00 0.00 3.41
228 231 3.187227 GCGTTCACATCACACTGAAGAAT 59.813 43.478 0.00 0.00 0.00 2.40
230 233 2.135139 GCGTTCACATCACACTGAAGA 58.865 47.619 0.00 0.00 0.00 2.87
231 234 2.096565 CAGCGTTCACATCACACTGAAG 60.097 50.000 0.00 0.00 0.00 3.02
234 237 1.070376 CACAGCGTTCACATCACACTG 60.070 52.381 0.00 0.00 0.00 3.66
235 238 1.220529 CACAGCGTTCACATCACACT 58.779 50.000 0.00 0.00 0.00 3.55
238 241 1.207593 GCCACAGCGTTCACATCAC 59.792 57.895 0.00 0.00 0.00 3.06
239 242 3.654201 GCCACAGCGTTCACATCA 58.346 55.556 0.00 0.00 0.00 3.07
250 253 0.381801 AAGTTCAAGCAACGCCACAG 59.618 50.000 0.00 0.00 40.32 3.66
266 269 4.310769 CAAGGTCGTTCTCAAGATCAAGT 58.689 43.478 0.00 0.00 0.00 3.16
284 287 1.407437 GCCATATATCGAGGCCCAAGG 60.407 57.143 0.00 0.00 42.58 3.61
285 288 1.740380 CGCCATATATCGAGGCCCAAG 60.740 57.143 0.00 0.00 45.56 3.61
286 289 0.249120 CGCCATATATCGAGGCCCAA 59.751 55.000 0.00 0.00 45.56 4.12
287 290 1.897423 CGCCATATATCGAGGCCCA 59.103 57.895 0.00 0.00 45.56 5.36
295 298 4.034858 CCAAGTGATGATGCGCCATATATC 59.965 45.833 4.18 0.48 0.00 1.63
304 307 1.202110 GCTCAACCAAGTGATGATGCG 60.202 52.381 0.00 0.00 0.00 4.73
344 348 2.334023 AGAACTAGCCCCTCATGATCC 58.666 52.381 0.00 0.00 0.00 3.36
359 363 9.274206 GAAAGTACTAATCCAAGAACAAGAACT 57.726 33.333 0.00 0.00 0.00 3.01
411 415 7.440523 AAAAAGTATCACTGATCCAAGTCAC 57.559 36.000 0.00 0.00 0.00 3.67
458 462 3.287222 GTTAGCATTGTAGGATGGCCAA 58.713 45.455 10.96 0.00 36.29 4.52
459 463 2.240921 TGTTAGCATTGTAGGATGGCCA 59.759 45.455 8.56 8.56 36.29 5.36
461 465 2.618709 GGTGTTAGCATTGTAGGATGGC 59.381 50.000 0.00 0.00 0.00 4.40
498 502 9.976511 CATTGATATGGTGAGATTTTTAGCATT 57.023 29.630 0.00 0.00 34.69 3.56
519 523 0.558220 TTTGTGGTGGGACCCATTGA 59.442 50.000 18.51 0.12 37.50 2.57
601 605 3.428589 GGCCTACTTAGTTGTCCACGTAG 60.429 52.174 0.00 0.00 0.00 3.51
769 773 7.014808 TCCCCACTTAAAGTCCAATTTTTAGTG 59.985 37.037 8.90 8.90 35.52 2.74
840 847 9.003658 CACTTGAAATACTCCACACTAAAAGAT 57.996 33.333 0.00 0.00 0.00 2.40
841 848 7.990886 ACACTTGAAATACTCCACACTAAAAGA 59.009 33.333 0.00 0.00 0.00 2.52
842 849 8.070171 CACACTTGAAATACTCCACACTAAAAG 58.930 37.037 0.00 0.00 0.00 2.27
843 850 7.771361 TCACACTTGAAATACTCCACACTAAAA 59.229 33.333 0.00 0.00 0.00 1.52
844 851 7.276658 TCACACTTGAAATACTCCACACTAAA 58.723 34.615 0.00 0.00 0.00 1.85
845 852 6.822442 TCACACTTGAAATACTCCACACTAA 58.178 36.000 0.00 0.00 0.00 2.24
846 853 6.413783 TCACACTTGAAATACTCCACACTA 57.586 37.500 0.00 0.00 0.00 2.74
847 854 5.290493 TCACACTTGAAATACTCCACACT 57.710 39.130 0.00 0.00 0.00 3.55
848 855 7.667043 TTATCACACTTGAAATACTCCACAC 57.333 36.000 0.00 0.00 34.61 3.82
849 856 7.936847 AGTTTATCACACTTGAAATACTCCACA 59.063 33.333 0.00 0.00 34.61 4.17
850 857 8.324163 AGTTTATCACACTTGAAATACTCCAC 57.676 34.615 0.00 0.00 34.61 4.02
851 858 8.918202 AAGTTTATCACACTTGAAATACTCCA 57.082 30.769 0.00 0.00 34.61 3.86
860 867 9.725019 ATCTGTGATTAAGTTTATCACACTTGA 57.275 29.630 26.01 22.32 46.53 3.02
965 1004 2.364448 GAGGAAGAGAGGGGGCGT 60.364 66.667 0.00 0.00 0.00 5.68
1077 1116 1.522569 GAAGAGACGATGGGGTGGG 59.477 63.158 0.00 0.00 0.00 4.61
1143 1297 2.584608 GGTGGGAGGATGTGACCG 59.415 66.667 0.00 0.00 34.73 4.79
1442 1596 0.446222 CGAAACTGCCGGTTACATGG 59.554 55.000 1.90 0.00 37.12 3.66
1569 1723 7.928706 AGGTTCTTTTCCTCTCGATATATGTTG 59.071 37.037 0.00 0.00 0.00 3.33
1643 1797 6.747414 ATGCTAAGATATACCAACACAGGA 57.253 37.500 0.00 0.00 0.00 3.86
1675 1829 7.144722 TCAACACCAAGCTTAAGATATTGTG 57.855 36.000 6.67 10.63 0.00 3.33
1713 1867 0.474184 ACAGGCTGCCAGTAAACAGT 59.526 50.000 22.65 3.09 36.26 3.55
2057 2213 2.289694 ACCATTACGTTCTTCTGCAGCT 60.290 45.455 9.47 0.00 0.00 4.24
2113 2269 2.679059 GCAGCAAGCTGATCTGTCCTAA 60.679 50.000 25.03 0.00 46.30 2.69
2150 2306 7.944554 CAGATGGGAAATAAATGGTATACCTGT 59.055 37.037 22.41 8.84 36.82 4.00
2269 2425 7.093421 TGCATGAGAAAAATGTAAATCCCATGA 60.093 33.333 0.00 0.00 31.99 3.07
2282 2438 1.135199 CGCTGGCTGCATGAGAAAAAT 60.135 47.619 16.76 0.00 43.06 1.82
2310 2466 1.421268 TCTGCAATGGTCCTGTTGAGT 59.579 47.619 10.59 0.00 0.00 3.41
2362 2518 0.889186 GTTCAACACCCTGTGGCGAT 60.889 55.000 0.00 0.00 37.94 4.58
2451 2607 4.338118 TGTGGCCATTTCCGAAATAAGATC 59.662 41.667 9.72 0.00 0.00 2.75
2504 2660 5.085920 ACCAATTCCAAATCACTGATTCCA 58.914 37.500 4.70 0.00 30.29 3.53
2511 2667 4.482990 ACCAAGACCAATTCCAAATCACT 58.517 39.130 0.00 0.00 0.00 3.41
2746 2903 7.686438 ATGACAGTTCATGTGTTTATAGCAA 57.314 32.000 0.00 0.00 44.17 3.91
2755 2912 7.161404 ACAGTTGTATATGACAGTTCATGTGT 58.839 34.615 0.00 0.00 44.17 3.72
2877 3034 9.125026 GATAGTGTTTCATCTTTTGGATATGGT 57.875 33.333 0.00 0.00 32.64 3.55
2914 3071 1.411041 AGCCCATTCGGTCCTAGTAC 58.589 55.000 0.00 0.00 0.00 2.73
2952 3109 2.124411 ACCTTCACACCACTAACAGGT 58.876 47.619 0.00 0.00 40.85 4.00
3041 3198 8.050778 TGGACCTGTAAAACAAGCAATTATAG 57.949 34.615 0.00 0.00 0.00 1.31
3104 3261 6.496144 AACCTTTACAAGTTCTCACCTAGT 57.504 37.500 0.00 0.00 0.00 2.57
3118 3275 9.528489 AATGGAGAATAAGCTAAAACCTTTACA 57.472 29.630 0.00 0.00 0.00 2.41
3388 3545 5.247564 TGGGAGAATTCTTCCTCGAAACTAA 59.752 40.000 29.37 6.92 42.41 2.24
3530 3687 0.871722 GCAAATTTTGGAAACGCCCC 59.128 50.000 10.96 0.00 34.97 5.80
3539 3696 8.782144 AGTTTATTTACCACATGCAAATTTTGG 58.218 29.630 10.96 4.60 0.00 3.28
3686 3845 6.569610 CGGCTGTCAAGGTAAAACAACATAAT 60.570 38.462 0.00 0.00 0.00 1.28
4032 4192 1.797964 CGCGAATTACAAAAGGCTCG 58.202 50.000 0.00 0.00 0.00 5.03
4049 4209 3.374058 TGAAAAAGGTATAAGAGCAGCGC 59.626 43.478 0.00 0.00 0.00 5.92
4050 4210 5.741388 ATGAAAAAGGTATAAGAGCAGCG 57.259 39.130 0.00 0.00 0.00 5.18
4207 4367 6.317857 GCTGGTCACATTTTCTTCTGATAAC 58.682 40.000 0.00 0.00 0.00 1.89
4371 4539 4.641989 CAGCCACTAGCCACTAATCAAATT 59.358 41.667 0.00 0.00 45.47 1.82
4394 4562 1.789078 CTTATGGCGGGTGCAGCATC 61.789 60.000 19.06 8.14 45.35 3.91
4494 4662 7.704899 ACTGGAAAAGGAAAACAAGTTATTTCG 59.295 33.333 7.04 0.00 36.60 3.46
4635 4803 8.037758 CAGGACACTCAAAAGTCTGAATATAGT 58.962 37.037 0.00 0.00 35.18 2.12
5186 5371 4.340950 CCTTAGCTTCAACAAGTTCCCAAA 59.659 41.667 0.00 0.00 31.45 3.28
5202 5387 9.167311 CAGAATGAGTTAACAATAACCTTAGCT 57.833 33.333 8.61 0.00 41.98 3.32
5344 5529 8.675705 AAAGAACATAAAATTGTGAAAAGGGG 57.324 30.769 0.00 0.00 0.00 4.79
5500 5686 3.159213 AGTTGCTGGACATGGAATCAA 57.841 42.857 0.00 0.00 0.00 2.57
5505 5691 2.637382 TCAACTAGTTGCTGGACATGGA 59.363 45.455 27.49 6.49 40.24 3.41
5605 5791 5.539955 AGAAATTACAACCCAGCTTCATTGT 59.460 36.000 10.25 10.25 38.72 2.71
5613 5799 3.938963 TGATCGAGAAATTACAACCCAGC 59.061 43.478 0.00 0.00 0.00 4.85
5683 5869 5.440685 CCAACGAACACAGTTTCAAGATAC 58.559 41.667 0.00 0.00 0.00 2.24
5830 6026 8.072321 TCACAGTTAGCTGAATTCTATCTTCT 57.928 34.615 14.09 0.00 45.28 2.85
6091 6289 5.994887 TCATTGCACGTGTTTAGTTACTT 57.005 34.783 18.38 0.00 0.00 2.24
6129 6327 3.496337 CCTCCTGAATAGCATGCTGATGT 60.496 47.826 30.42 11.98 31.50 3.06
6155 6353 5.505654 GCTGTAAATTATGAATCACCCACCG 60.506 44.000 0.00 0.00 0.00 4.94
6168 6366 4.210331 CCTCCAGGCTTGCTGTAAATTAT 58.790 43.478 0.00 0.00 0.00 1.28
6186 6384 4.154195 CAGCACAACACAACTAATACCTCC 59.846 45.833 0.00 0.00 0.00 4.30
6188 6386 3.502211 GCAGCACAACACAACTAATACCT 59.498 43.478 0.00 0.00 0.00 3.08
6256 6454 3.938963 GCTGATCCAAAACATCCTAACGA 59.061 43.478 0.00 0.00 0.00 3.85
6257 6455 3.065371 GGCTGATCCAAAACATCCTAACG 59.935 47.826 0.00 0.00 34.01 3.18
6291 6489 8.322906 TCACAACATCTCCACTAACATAAAAG 57.677 34.615 0.00 0.00 0.00 2.27
6365 6563 4.660789 AGAAGCAAGCAGTTGACAAATT 57.339 36.364 0.00 0.00 35.46 1.82
6394 6592 9.937175 GATTTGCTGGAGTAGTTTATGAAATAC 57.063 33.333 0.00 0.00 36.76 1.89
6427 6626 6.438763 CCAAACACAGGATCAAGTTAAGAAC 58.561 40.000 0.00 0.00 0.00 3.01
6460 6659 2.373169 AGGAAGCATGACCTGTTGAAGA 59.627 45.455 0.00 0.00 34.99 2.87
6462 6661 2.507484 CAGGAAGCATGACCTGTTGAA 58.493 47.619 19.14 0.00 45.82 2.69
6728 7011 2.423577 GGAGGAACGTAAAGCATGTGT 58.576 47.619 0.00 0.00 0.00 3.72
6779 7062 8.167605 TGTTATTTTAGGTTCAACGGATTCAA 57.832 30.769 0.00 0.00 0.00 2.69
6836 7205 4.868171 CGTATTTTCCGAGGATCTGTTTCA 59.132 41.667 0.00 0.00 0.00 2.69
6843 7212 4.386049 CAGTATGCGTATTTTCCGAGGATC 59.614 45.833 0.00 0.00 0.00 3.36
6948 7317 2.880890 GTGCTTCCTGCTCAGAGAAAAA 59.119 45.455 0.00 0.00 43.37 1.94
7106 7475 4.330074 GGTCGACCATATCAAACTTCACAG 59.670 45.833 29.75 0.00 35.64 3.66
7264 7641 2.907407 GGCAAATAGGGAGGGCGC 60.907 66.667 0.00 0.00 0.00 6.53
7298 7675 2.257894 GACATGAGAACTCACTCTGCG 58.742 52.381 6.67 0.00 43.11 5.18
7323 8047 1.613437 CTCTTTGTTCCCCGCACAAAT 59.387 47.619 0.35 0.00 41.99 2.32
7324 8048 1.028905 CTCTTTGTTCCCCGCACAAA 58.971 50.000 0.11 0.11 40.93 2.83
7327 8051 0.534203 TGTCTCTTTGTTCCCCGCAC 60.534 55.000 0.00 0.00 0.00 5.34
7340 8064 5.123502 GCAATCATCAACTGTGAATGTCTCT 59.876 40.000 3.49 0.00 37.30 3.10
7353 8077 5.693104 TCTCTTTTTGCAAGCAATCATCAAC 59.307 36.000 8.46 0.00 35.70 3.18
7438 8220 3.389329 TGCAAAGGAACCTATGGCAAAAA 59.611 39.130 10.14 0.00 0.00 1.94
7473 8255 4.206375 TCAAGTGCAATGAAAACAGAGGA 58.794 39.130 1.14 0.00 0.00 3.71
7476 8258 8.980610 CAAAATATCAAGTGCAATGAAAACAGA 58.019 29.630 7.46 0.00 0.00 3.41
7507 8289 6.226787 CAAACTACAGCTATCTAGGGAATGG 58.773 44.000 0.00 0.00 0.00 3.16
7512 8294 4.202264 CCACCAAACTACAGCTATCTAGGG 60.202 50.000 0.00 0.00 0.00 3.53
7534 8316 6.904463 TTACCAAACCAAACTAGGAATTCC 57.096 37.500 17.31 17.31 0.00 3.01
7535 8317 7.718525 TGTTTACCAAACCAAACTAGGAATTC 58.281 34.615 0.00 0.00 40.67 2.17
7536 8318 7.663043 TGTTTACCAAACCAAACTAGGAATT 57.337 32.000 0.00 0.00 40.67 2.17
7537 8319 7.663043 TTGTTTACCAAACCAAACTAGGAAT 57.337 32.000 0.00 0.00 40.67 3.01
7538 8320 7.663043 ATTGTTTACCAAACCAAACTAGGAA 57.337 32.000 0.00 0.00 40.67 3.36
7539 8321 7.418025 CCAATTGTTTACCAAACCAAACTAGGA 60.418 37.037 4.43 0.00 40.67 2.94
7540 8322 6.704050 CCAATTGTTTACCAAACCAAACTAGG 59.296 38.462 4.43 0.00 40.67 3.02
7541 8323 7.269316 ACCAATTGTTTACCAAACCAAACTAG 58.731 34.615 4.43 0.00 40.67 2.57
7542 8324 7.184067 ACCAATTGTTTACCAAACCAAACTA 57.816 32.000 4.43 0.00 40.67 2.24
7543 8325 6.056090 ACCAATTGTTTACCAAACCAAACT 57.944 33.333 4.43 0.00 40.67 2.66
7544 8326 6.745159 AACCAATTGTTTACCAAACCAAAC 57.255 33.333 4.43 0.00 40.67 2.93
7545 8327 8.265055 TGATAACCAATTGTTTACCAAACCAAA 58.735 29.630 4.43 0.00 40.67 3.28
7546 8328 7.792032 TGATAACCAATTGTTTACCAAACCAA 58.208 30.769 4.43 0.00 40.67 3.67
7547 8329 7.361457 TGATAACCAATTGTTTACCAAACCA 57.639 32.000 4.43 0.00 40.67 3.67
7548 8330 8.078959 GTTGATAACCAATTGTTTACCAAACC 57.921 34.615 4.25 0.00 37.56 3.27
7573 8368 2.357593 ATTTATGCCAGGCTCCGGGG 62.358 60.000 14.15 0.00 0.00 5.73
7576 8371 1.334869 GTGAATTTATGCCAGGCTCCG 59.665 52.381 14.15 0.00 0.00 4.63
7582 8377 1.405105 CACGGGGTGAATTTATGCCAG 59.595 52.381 0.00 0.00 35.23 4.85
7657 8828 3.880846 CGGGCATGGAAAGCGAGC 61.881 66.667 0.00 0.00 0.00 5.03
7663 8834 1.376683 CGGAAGACGGGCATGGAAA 60.377 57.895 0.00 0.00 39.42 3.13
7664 8835 2.238847 CTCGGAAGACGGGCATGGAA 62.239 60.000 0.00 0.00 44.45 3.53
7665 8836 2.682136 TCGGAAGACGGGCATGGA 60.682 61.111 0.00 0.00 44.45 3.41
7666 8837 2.202932 CTCGGAAGACGGGCATGG 60.203 66.667 0.00 0.00 44.45 3.66
7667 8838 1.227089 CTCTCGGAAGACGGGCATG 60.227 63.158 0.00 0.00 44.66 4.06
7668 8839 0.757188 ATCTCTCGGAAGACGGGCAT 60.757 55.000 0.00 0.00 44.66 4.40
7669 8840 0.970937 AATCTCTCGGAAGACGGGCA 60.971 55.000 0.00 0.00 44.66 5.36
7670 8841 0.175989 AAATCTCTCGGAAGACGGGC 59.824 55.000 0.00 0.00 44.66 6.13
7672 8843 1.476891 TCCAAATCTCTCGGAAGACGG 59.523 52.381 0.00 0.00 44.45 4.79
7673 8844 2.941453 TCCAAATCTCTCGGAAGACG 57.059 50.000 0.00 0.00 46.11 4.18
7674 8845 4.759782 TCATTCCAAATCTCTCGGAAGAC 58.240 43.478 0.00 0.00 41.91 3.01
7675 8846 5.187772 TCTTCATTCCAAATCTCTCGGAAGA 59.812 40.000 0.00 0.00 41.91 2.87
7676 8847 5.423015 TCTTCATTCCAAATCTCTCGGAAG 58.577 41.667 0.00 0.00 41.91 3.46
7677 8848 5.420725 TCTTCATTCCAAATCTCTCGGAA 57.579 39.130 0.00 0.00 42.77 4.30
7678 8849 5.620738 ATCTTCATTCCAAATCTCTCGGA 57.379 39.130 0.00 0.00 0.00 4.55
7679 8850 6.520272 ACTATCTTCATTCCAAATCTCTCGG 58.480 40.000 0.00 0.00 0.00 4.63
7680 8851 7.432869 AGACTATCTTCATTCCAAATCTCTCG 58.567 38.462 0.00 0.00 0.00 4.04
7696 8867 9.144298 TGTAGATATTTTCCGGAAGACTATCTT 57.856 33.333 30.09 21.14 39.87 2.40
7697 8868 8.707796 TGTAGATATTTTCCGGAAGACTATCT 57.292 34.615 28.99 28.99 0.00 1.98
7698 8869 9.930693 ATTGTAGATATTTTCCGGAAGACTATC 57.069 33.333 17.97 21.02 0.00 2.08
7699 8870 9.712305 CATTGTAGATATTTTCCGGAAGACTAT 57.288 33.333 17.97 14.61 0.00 2.12
7700 8871 7.656137 GCATTGTAGATATTTTCCGGAAGACTA 59.344 37.037 17.97 13.63 0.00 2.59
7701 8872 6.483640 GCATTGTAGATATTTTCCGGAAGACT 59.516 38.462 17.97 14.53 0.00 3.24
7702 8873 6.293462 GGCATTGTAGATATTTTCCGGAAGAC 60.293 42.308 17.97 8.29 0.00 3.01
7703 8874 5.763204 GGCATTGTAGATATTTTCCGGAAGA 59.237 40.000 17.97 14.11 0.00 2.87
7704 8875 5.530915 TGGCATTGTAGATATTTTCCGGAAG 59.469 40.000 17.97 1.83 0.00 3.46
7737 8908 5.745312 TCTCTCTTCTGATGTTAGCCAAA 57.255 39.130 0.00 0.00 0.00 3.28
7740 8911 4.343526 TCCATCTCTCTTCTGATGTTAGCC 59.656 45.833 0.00 0.00 38.59 3.93
7750 8921 4.163458 ACTCTACGACTCCATCTCTCTTCT 59.837 45.833 0.00 0.00 0.00 2.85
7768 8939 0.541063 TTGGCCTCCACGACACTCTA 60.541 55.000 3.32 0.00 30.78 2.43
7776 8947 1.817099 GATGCTCTTGGCCTCCACG 60.817 63.158 3.32 0.00 40.92 4.94
7778 8949 0.254178 GAAGATGCTCTTGGCCTCCA 59.746 55.000 3.32 0.00 36.73 3.86
7789 9123 2.455674 TGTACTGCGTTGAAGATGCT 57.544 45.000 0.00 0.00 41.04 3.79
7796 9130 1.459209 CGCTTTGATGTACTGCGTTGA 59.541 47.619 0.00 0.00 41.45 3.18
7822 9160 4.701956 ATCCCGCAGTTCAAACATTTAG 57.298 40.909 0.00 0.00 0.00 1.85
7836 9174 1.540267 AAAAATGTCCGAATCCCGCA 58.460 45.000 0.00 0.00 36.84 5.69
7861 9199 6.551736 GGACATTTGATGTACCATGTTGTAC 58.448 40.000 5.57 5.57 45.03 2.90
7866 9204 2.682856 GCGGACATTTGATGTACCATGT 59.317 45.455 0.00 0.00 45.03 3.21
7869 9207 2.027653 TCTGCGGACATTTGATGTACCA 60.028 45.455 0.00 0.00 45.03 3.25
7875 9213 1.825090 TTGCTCTGCGGACATTTGAT 58.175 45.000 0.00 0.00 0.00 2.57
7881 9219 1.078918 CTGGATTGCTCTGCGGACA 60.079 57.895 0.00 0.00 0.00 4.02
7883 9221 1.219124 GACTGGATTGCTCTGCGGA 59.781 57.895 0.00 0.00 0.00 5.54
7887 9225 1.203287 TCAGACGACTGGATTGCTCTG 59.797 52.381 14.76 0.72 43.60 3.35
7897 9235 2.455674 TGTGGGATTTCAGACGACTG 57.544 50.000 8.68 8.68 44.66 3.51
7899 9237 2.225727 GGTTTGTGGGATTTCAGACGAC 59.774 50.000 0.00 0.00 0.00 4.34
7901 9239 1.196808 CGGTTTGTGGGATTTCAGACG 59.803 52.381 0.00 0.00 0.00 4.18
7915 9253 2.747446 CCTCAGGTTTACATCCGGTTTG 59.253 50.000 0.00 3.17 0.00 2.93
7919 9257 3.343941 TTTCCTCAGGTTTACATCCGG 57.656 47.619 0.00 0.00 0.00 5.14
7924 9262 4.698304 CCGCTAAATTTCCTCAGGTTTACA 59.302 41.667 0.00 0.00 0.00 2.41
7925 9263 4.939439 TCCGCTAAATTTCCTCAGGTTTAC 59.061 41.667 0.00 0.00 0.00 2.01
7934 9272 2.758979 TCTCGACTCCGCTAAATTTCCT 59.241 45.455 0.00 0.00 35.37 3.36
7937 9275 3.056749 ACTGTCTCGACTCCGCTAAATTT 60.057 43.478 0.00 0.00 35.37 1.82
7939 9277 2.093106 ACTGTCTCGACTCCGCTAAAT 58.907 47.619 0.00 0.00 35.37 1.40
7943 9281 2.041686 GGACTGTCTCGACTCCGCT 61.042 63.158 7.85 0.00 35.37 5.52
7945 9283 1.797441 CAGGACTGTCTCGACTCCG 59.203 63.158 7.85 0.00 32.65 4.63
7946 9284 0.963355 AGCAGGACTGTCTCGACTCC 60.963 60.000 7.85 0.00 0.00 3.85
7948 9286 0.600557 CAAGCAGGACTGTCTCGACT 59.399 55.000 7.85 0.00 0.00 4.18
7949 9287 0.389166 CCAAGCAGGACTGTCTCGAC 60.389 60.000 7.85 0.00 41.22 4.20
7950 9288 1.967535 CCAAGCAGGACTGTCTCGA 59.032 57.895 7.85 0.00 41.22 4.04
7951 9289 1.739562 GCCAAGCAGGACTGTCTCG 60.740 63.158 7.85 0.38 41.22 4.04
7952 9290 1.376553 GGCCAAGCAGGACTGTCTC 60.377 63.158 7.85 0.00 44.70 3.36
7953 9291 2.753029 GGCCAAGCAGGACTGTCT 59.247 61.111 7.85 0.00 44.70 3.41
7961 9301 0.820891 AACTGACAGTGGCCAAGCAG 60.821 55.000 7.24 15.05 0.00 4.24
7962 9302 0.819259 GAACTGACAGTGGCCAAGCA 60.819 55.000 7.24 2.04 0.00 3.91
7975 9315 8.277490 ACTATAAGAACATGTAGTCGAACTGA 57.723 34.615 0.00 0.00 0.00 3.41
7976 9316 7.644551 GGACTATAAGAACATGTAGTCGAACTG 59.355 40.741 14.84 1.65 42.36 3.16
7977 9317 7.338703 TGGACTATAAGAACATGTAGTCGAACT 59.661 37.037 14.84 0.00 42.36 3.01
7978 9318 7.478322 TGGACTATAAGAACATGTAGTCGAAC 58.522 38.462 14.84 5.50 42.36 3.95
7979 9319 7.634671 TGGACTATAAGAACATGTAGTCGAA 57.365 36.000 14.84 6.25 42.36 3.71
7981 9321 7.859613 CATGGACTATAAGAACATGTAGTCG 57.140 40.000 14.84 2.20 42.36 4.18
7987 9327 5.237996 CAGGCACATGGACTATAAGAACATG 59.762 44.000 0.00 0.00 43.29 3.21
7988 9328 5.371526 CAGGCACATGGACTATAAGAACAT 58.628 41.667 0.00 0.00 29.10 2.71
7989 9329 4.384098 CCAGGCACATGGACTATAAGAACA 60.384 45.833 0.00 0.00 43.57 3.18
7990 9330 4.130118 CCAGGCACATGGACTATAAGAAC 58.870 47.826 0.00 0.00 43.57 3.01
7991 9331 3.433598 GCCAGGCACATGGACTATAAGAA 60.434 47.826 6.55 0.00 43.57 2.52
7992 9332 2.104792 GCCAGGCACATGGACTATAAGA 59.895 50.000 6.55 0.00 43.57 2.10
7993 9333 2.498167 GCCAGGCACATGGACTATAAG 58.502 52.381 6.55 0.00 43.57 1.73
7994 9334 1.142870 GGCCAGGCACATGGACTATAA 59.857 52.381 15.19 0.00 45.80 0.98
7995 9335 0.764890 GGCCAGGCACATGGACTATA 59.235 55.000 15.19 0.00 45.80 1.31
7996 9336 1.533711 GGCCAGGCACATGGACTAT 59.466 57.895 15.19 0.00 45.80 2.12
8018 9358 2.114670 ATCAAATCCGGCCAGCACG 61.115 57.895 2.24 0.00 0.00 5.34
8019 9359 1.434696 CATCAAATCCGGCCAGCAC 59.565 57.895 2.24 0.00 0.00 4.40
8045 9410 5.124297 CACTCATCCAACTGTATGCATCAAA 59.876 40.000 0.19 0.00 0.00 2.69
8058 9423 3.131400 GGTAGGAGAGTCACTCATCCAAC 59.869 52.174 19.59 7.22 46.54 3.77
8065 9430 2.161030 ACAACGGTAGGAGAGTCACTC 58.839 52.381 0.00 0.00 44.24 3.51
8068 9433 2.313317 ACAACAACGGTAGGAGAGTCA 58.687 47.619 0.00 0.00 0.00 3.41
8070 9435 2.288030 CGAACAACAACGGTAGGAGAGT 60.288 50.000 0.00 0.00 0.00 3.24
8071 9436 2.288030 ACGAACAACAACGGTAGGAGAG 60.288 50.000 0.00 0.00 0.00 3.20
8076 9441 1.523934 GTCCACGAACAACAACGGTAG 59.476 52.381 0.00 0.00 0.00 3.18
8077 9442 1.134877 TGTCCACGAACAACAACGGTA 60.135 47.619 0.00 0.00 0.00 4.02
8078 9443 0.391395 TGTCCACGAACAACAACGGT 60.391 50.000 0.00 0.00 0.00 4.83
8089 9454 2.002509 TTCGACGGTTGTGTCCACGA 62.003 55.000 0.00 0.00 35.40 4.35
8184 9549 8.358148 CGAAGCCAAATTATAACTACTCTCCTA 58.642 37.037 0.00 0.00 0.00 2.94
8268 9633 4.864704 AATGTTTTTCCATAGCAACGGT 57.135 36.364 0.00 0.00 0.00 4.83
8269 9634 6.616947 TCTAAATGTTTTTCCATAGCAACGG 58.383 36.000 0.00 0.00 0.00 4.44
8270 9635 7.807907 ACTTCTAAATGTTTTTCCATAGCAACG 59.192 33.333 0.00 0.00 0.00 4.10
8285 9651 8.947115 GGCACACTTTAATCTACTTCTAAATGT 58.053 33.333 0.00 0.00 0.00 2.71
8310 10590 7.789202 TCCCTCAAAGATCTTATATCTCTGG 57.211 40.000 8.75 2.42 0.00 3.86
8317 10597 9.309224 TCGTCAATATCCCTCAAAGATCTTATA 57.691 33.333 8.75 2.17 0.00 0.98
8318 10598 8.195165 TCGTCAATATCCCTCAAAGATCTTAT 57.805 34.615 8.75 0.00 0.00 1.73
8326 10606 3.196039 TCGGTTCGTCAATATCCCTCAAA 59.804 43.478 0.00 0.00 0.00 2.69
8327 10607 2.761767 TCGGTTCGTCAATATCCCTCAA 59.238 45.455 0.00 0.00 0.00 3.02
8331 10611 1.202486 TGCTCGGTTCGTCAATATCCC 60.202 52.381 0.00 0.00 0.00 3.85
8360 10640 8.641498 ATTTTGGAACTGAGAAAGTACATCAT 57.359 30.769 0.00 0.00 38.56 2.45
8375 10655 9.588096 ACCTAAGATTTCAAGTATTTTGGAACT 57.412 29.630 0.00 0.00 0.00 3.01



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.