Multiple sequence alignment - TraesCS4D01G057200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G057200 chr4D 100.000 5475 0 0 1 5475 32242690 32237216 0.000000e+00 10111.0
1 TraesCS4D01G057200 chr4D 93.750 48 3 0 3402 3449 26900863 26900910 7.610000e-09 73.1
2 TraesCS4D01G057200 chr4A 93.757 4741 164 56 157 4831 570460581 570465255 0.000000e+00 6994.0
3 TraesCS4D01G057200 chr4A 79.227 414 49 17 5014 5412 570465487 570465878 2.530000e-63 254.0
4 TraesCS4D01G057200 chr4A 91.781 73 4 2 4925 4997 570465291 570465361 3.490000e-17 100.0
5 TraesCS4D01G057200 chr4B 94.905 3690 112 28 157 3797 46628278 46624616 0.000000e+00 5703.0
6 TraesCS4D01G057200 chr4B 92.736 1005 27 15 3867 4851 46624449 46623471 0.000000e+00 1410.0
7 TraesCS4D01G057200 chr4B 95.833 48 2 0 3402 3449 527285817 527285864 1.640000e-10 78.7
8 TraesCS4D01G057200 chr3A 97.872 47 1 0 3405 3451 74237186 74237140 1.260000e-11 82.4
9 TraesCS4D01G057200 chr7B 97.674 43 1 0 3405 3447 720828535 720828577 2.120000e-09 75.0
10 TraesCS4D01G057200 chr6A 97.674 43 1 0 3405 3447 573411172 573411130 2.120000e-09 75.0
11 TraesCS4D01G057200 chr1D 95.652 46 2 0 3402 3447 400014218 400014263 2.120000e-09 75.0
12 TraesCS4D01G057200 chr1D 95.652 46 2 0 3402 3447 400014320 400014365 2.120000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G057200 chr4D 32237216 32242690 5474 True 10111.000000 10111 100.0000 1 5475 1 chr4D.!!$R1 5474
1 TraesCS4D01G057200 chr4A 570460581 570465878 5297 False 2449.333333 6994 88.2550 157 5412 3 chr4A.!!$F1 5255
2 TraesCS4D01G057200 chr4B 46623471 46628278 4807 True 3556.500000 5703 93.8205 157 4851 2 chr4B.!!$R1 4694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.040958 CTTTCGAGCAAAGCGCACTT 60.041 50.0 11.47 0.0 46.13 3.16 F
145 146 0.107831 GTGGTGGACTGTACTGGCAA 59.892 55.0 7.99 0.0 0.00 4.52 F
146 147 0.396435 TGGTGGACTGTACTGGCAAG 59.604 55.0 7.99 0.0 0.00 4.01 F
718 749 0.456312 CTCGATTAGCCGCCGTATCC 60.456 60.0 0.00 0.0 0.00 2.59 F
2241 2294 0.179215 CAAATTCAGCTCGACACCGC 60.179 55.0 0.00 0.0 35.37 5.68 F
2977 3060 0.037326 CAAACCTGAGAGGCGCACTA 60.037 55.0 10.83 0.0 39.63 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1616 1664 0.527565 GCACCCAAAGCCTGTACATG 59.472 55.000 0.00 0.00 0.00 3.21 R
1870 1923 1.438651 TTGGAATCGAGCGAACAAGG 58.561 50.000 0.00 0.00 0.00 3.61 R
2095 2148 8.506168 TTTGAAGTGTAGAGAACATCAAAACT 57.494 30.769 4.92 0.00 41.09 2.66 R
2598 2656 2.238144 ACAACATGCTACTGCCTCAGAT 59.762 45.455 0.29 0.00 38.71 2.90 R
3044 3127 0.038709 ACAAGCTCAGTCGTCAGCTC 60.039 55.000 0.00 0.00 45.58 4.09 R
4896 5142 0.031857 CTATCTGTCTCGCTGCTGGG 59.968 60.000 0.85 0.85 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.867248 TGTTTTAAAATGTGTTTTTCTTTCGC 57.133 26.923 3.52 0.00 38.47 4.70
33 34 7.958025 TGTTTTAAAATGTGTTTTTCTTTCGCC 59.042 29.630 3.52 0.00 38.47 5.54
34 35 4.770351 AAAATGTGTTTTTCTTTCGCCG 57.230 36.364 0.00 0.00 33.89 6.46
35 36 1.766069 ATGTGTTTTTCTTTCGCCGC 58.234 45.000 0.00 0.00 0.00 6.53
36 37 0.736053 TGTGTTTTTCTTTCGCCGCT 59.264 45.000 0.00 0.00 0.00 5.52
37 38 1.941294 TGTGTTTTTCTTTCGCCGCTA 59.059 42.857 0.00 0.00 0.00 4.26
38 39 2.286536 TGTGTTTTTCTTTCGCCGCTAC 60.287 45.455 0.00 0.00 0.00 3.58
39 40 2.032290 GTGTTTTTCTTTCGCCGCTACT 60.032 45.455 0.00 0.00 0.00 2.57
40 41 2.222445 TGTTTTTCTTTCGCCGCTACTC 59.778 45.455 0.00 0.00 0.00 2.59
41 42 2.450609 TTTTCTTTCGCCGCTACTCT 57.549 45.000 0.00 0.00 0.00 3.24
42 43 1.992170 TTTCTTTCGCCGCTACTCTC 58.008 50.000 0.00 0.00 0.00 3.20
43 44 0.172803 TTCTTTCGCCGCTACTCTCC 59.827 55.000 0.00 0.00 0.00 3.71
44 45 1.227002 CTTTCGCCGCTACTCTCCC 60.227 63.158 0.00 0.00 0.00 4.30
45 46 1.668101 CTTTCGCCGCTACTCTCCCT 61.668 60.000 0.00 0.00 0.00 4.20
46 47 0.394762 TTTCGCCGCTACTCTCCCTA 60.395 55.000 0.00 0.00 0.00 3.53
47 48 0.818445 TTCGCCGCTACTCTCCCTAG 60.818 60.000 0.00 0.00 0.00 3.02
48 49 1.526455 CGCCGCTACTCTCCCTAGT 60.526 63.158 0.00 0.00 0.00 2.57
49 50 1.508808 CGCCGCTACTCTCCCTAGTC 61.509 65.000 0.00 0.00 0.00 2.59
50 51 1.174078 GCCGCTACTCTCCCTAGTCC 61.174 65.000 0.00 0.00 0.00 3.85
51 52 0.183014 CCGCTACTCTCCCTAGTCCA 59.817 60.000 0.00 0.00 0.00 4.02
52 53 1.600023 CGCTACTCTCCCTAGTCCAG 58.400 60.000 0.00 0.00 0.00 3.86
53 54 1.141254 CGCTACTCTCCCTAGTCCAGA 59.859 57.143 0.00 0.00 0.00 3.86
54 55 2.224670 CGCTACTCTCCCTAGTCCAGAT 60.225 54.545 0.00 0.00 0.00 2.90
55 56 3.749310 CGCTACTCTCCCTAGTCCAGATT 60.749 52.174 0.00 0.00 0.00 2.40
56 57 4.219919 GCTACTCTCCCTAGTCCAGATTT 58.780 47.826 0.00 0.00 0.00 2.17
57 58 4.651962 GCTACTCTCCCTAGTCCAGATTTT 59.348 45.833 0.00 0.00 0.00 1.82
58 59 5.129650 GCTACTCTCCCTAGTCCAGATTTTT 59.870 44.000 0.00 0.00 0.00 1.94
93 94 4.121490 CTTTCGAGCAAAGCGCAC 57.879 55.556 11.47 0.00 46.13 5.34
94 95 1.571460 CTTTCGAGCAAAGCGCACT 59.429 52.632 11.47 0.00 46.13 4.40
95 96 0.040958 CTTTCGAGCAAAGCGCACTT 60.041 50.000 11.47 0.00 46.13 3.16
96 97 0.316937 TTTCGAGCAAAGCGCACTTG 60.317 50.000 11.47 14.12 46.13 3.16
97 98 1.436195 TTCGAGCAAAGCGCACTTGT 61.436 50.000 19.53 9.50 46.13 3.16
98 99 1.723542 CGAGCAAAGCGCACTTGTG 60.724 57.895 19.53 2.85 46.13 3.33
99 100 1.370900 GAGCAAAGCGCACTTGTGG 60.371 57.895 19.53 0.48 46.13 4.17
100 101 1.785041 GAGCAAAGCGCACTTGTGGA 61.785 55.000 19.53 0.00 46.13 4.02
101 102 1.658409 GCAAAGCGCACTTGTGGAC 60.658 57.895 19.53 3.78 41.79 4.02
102 103 2.024918 CAAAGCGCACTTGTGGACT 58.975 52.632 11.47 0.00 35.85 3.85
103 104 0.040958 CAAAGCGCACTTGTGGACTC 60.041 55.000 11.47 0.00 35.85 3.36
104 105 0.179045 AAAGCGCACTTGTGGACTCT 60.179 50.000 11.47 0.00 35.85 3.24
105 106 0.601311 AAGCGCACTTGTGGACTCTC 60.601 55.000 11.47 0.00 33.84 3.20
106 107 1.005630 GCGCACTTGTGGACTCTCT 60.006 57.895 0.30 0.00 0.00 3.10
107 108 0.601311 GCGCACTTGTGGACTCTCTT 60.601 55.000 0.30 0.00 0.00 2.85
108 109 1.871080 CGCACTTGTGGACTCTCTTT 58.129 50.000 2.81 0.00 0.00 2.52
109 110 2.213499 CGCACTTGTGGACTCTCTTTT 58.787 47.619 2.81 0.00 0.00 2.27
110 111 2.614057 CGCACTTGTGGACTCTCTTTTT 59.386 45.455 2.81 0.00 0.00 1.94
141 142 3.577649 CACTAGTGGTGGACTGTACTG 57.422 52.381 15.49 0.00 41.90 2.74
142 143 2.231478 CACTAGTGGTGGACTGTACTGG 59.769 54.545 15.49 0.00 41.90 4.00
143 144 1.204941 CTAGTGGTGGACTGTACTGGC 59.795 57.143 4.66 0.23 35.96 4.85
144 145 0.762842 AGTGGTGGACTGTACTGGCA 60.763 55.000 7.99 0.00 31.75 4.92
145 146 0.107831 GTGGTGGACTGTACTGGCAA 59.892 55.000 7.99 0.00 0.00 4.52
146 147 0.396435 TGGTGGACTGTACTGGCAAG 59.604 55.000 7.99 0.00 0.00 4.01
147 148 0.685097 GGTGGACTGTACTGGCAAGA 59.315 55.000 7.99 0.00 0.00 3.02
148 149 1.071699 GGTGGACTGTACTGGCAAGAA 59.928 52.381 7.99 0.00 0.00 2.52
149 150 2.417719 GTGGACTGTACTGGCAAGAAG 58.582 52.381 7.99 0.00 0.00 2.85
150 151 2.037251 GTGGACTGTACTGGCAAGAAGA 59.963 50.000 7.99 0.00 0.00 2.87
151 152 2.703536 TGGACTGTACTGGCAAGAAGAA 59.296 45.455 7.99 0.00 0.00 2.52
152 153 3.244215 TGGACTGTACTGGCAAGAAGAAG 60.244 47.826 7.99 0.00 0.00 2.85
153 154 2.739379 GACTGTACTGGCAAGAAGAAGC 59.261 50.000 0.00 0.00 0.00 3.86
158 159 3.579685 GGCAAGAAGAAGCCGGTC 58.420 61.111 1.90 0.00 41.70 4.79
159 160 2.041115 GGCAAGAAGAAGCCGGTCC 61.041 63.158 1.90 0.00 41.70 4.46
160 161 1.302511 GCAAGAAGAAGCCGGTCCA 60.303 57.895 1.90 0.00 0.00 4.02
161 162 1.301677 GCAAGAAGAAGCCGGTCCAG 61.302 60.000 1.90 0.00 0.00 3.86
162 163 1.003233 AAGAAGAAGCCGGTCCAGC 60.003 57.895 1.90 0.00 0.00 4.85
195 196 1.049289 GCCCGAGGTAGAAGATGGGT 61.049 60.000 0.00 0.00 38.93 4.51
242 243 2.501223 GATCAGACGTGACGGGCCAA 62.501 60.000 10.66 0.00 34.75 4.52
718 749 0.456312 CTCGATTAGCCGCCGTATCC 60.456 60.000 0.00 0.00 0.00 2.59
840 872 2.083774 CCGCCAAGAACAGCAGAATTA 58.916 47.619 0.00 0.00 0.00 1.40
895 927 7.218773 CGAACGTGCAGAATTGATTGATTAATT 59.781 33.333 0.00 0.00 0.00 1.40
917 951 7.678947 ATTATCCGATGGACTGAATGAAATC 57.321 36.000 0.00 0.00 32.98 2.17
1297 1331 5.818887 TCATCTTCAGGTCAAATTCCATCA 58.181 37.500 0.00 0.00 0.00 3.07
1325 1368 5.048083 TCTGATAACCACCATTGTTTGCTTC 60.048 40.000 0.00 0.00 0.00 3.86
1331 1374 4.053295 CCACCATTGTTTGCTTCTTTCTG 58.947 43.478 0.00 0.00 0.00 3.02
1616 1664 0.933047 GACACGCGGCCTTTGTTTTC 60.933 55.000 12.47 0.00 0.00 2.29
1703 1751 4.993705 TTTCCAAGTAAGACCTGTCCAT 57.006 40.909 0.00 0.00 0.00 3.41
1704 1752 3.981071 TCCAAGTAAGACCTGTCCATG 57.019 47.619 0.00 0.00 0.00 3.66
1778 1831 3.144506 ACCATATGCTGCAGCTGATTAC 58.855 45.455 36.61 9.26 42.66 1.89
1870 1923 1.463674 ATCCGGGTCATTTTGCTGTC 58.536 50.000 0.00 0.00 0.00 3.51
1969 2022 5.719563 TGGATCTAGTTACCTGTCACATCAA 59.280 40.000 0.00 0.00 0.00 2.57
2060 2113 9.838339 AGTTGGAACTCAAATTATCTACCTATG 57.162 33.333 0.00 0.00 37.08 2.23
2114 2167 7.868415 AGTCTACAGTTTTGATGTTCTCTACAC 59.132 37.037 0.00 0.00 40.19 2.90
2148 2201 6.923928 TCGAATTTCTATGATGCATGTTCA 57.076 33.333 2.46 0.00 0.00 3.18
2201 2254 3.120025 TGCACTGGTAAAATGTGTATGCG 60.120 43.478 0.00 0.00 34.52 4.73
2217 2270 4.992319 TGTATGCGCTACTTTTACACTTGT 59.008 37.500 9.73 0.00 0.00 3.16
2233 2286 4.214437 CACTTGTCGTTCAAATTCAGCTC 58.786 43.478 0.00 0.00 35.48 4.09
2241 2294 0.179215 CAAATTCAGCTCGACACCGC 60.179 55.000 0.00 0.00 35.37 5.68
2257 2310 2.111384 ACCGCAGAGGCCCTATATATG 58.889 52.381 0.00 0.00 46.52 1.78
2500 2557 4.332828 TCACTGATCCAGAAGTAGTCGAA 58.667 43.478 0.45 0.00 35.18 3.71
2616 2674 4.760530 TTTATCTGAGGCAGTAGCATGT 57.239 40.909 0.00 0.00 44.61 3.21
2617 2675 4.760530 TTATCTGAGGCAGTAGCATGTT 57.239 40.909 0.00 0.00 44.61 2.71
2618 2676 2.391616 TCTGAGGCAGTAGCATGTTG 57.608 50.000 0.00 0.00 44.61 3.33
2619 2677 1.625315 TCTGAGGCAGTAGCATGTTGT 59.375 47.619 0.00 0.00 44.61 3.32
2620 2678 2.005451 CTGAGGCAGTAGCATGTTGTC 58.995 52.381 0.00 0.00 44.61 3.18
2621 2679 1.347378 TGAGGCAGTAGCATGTTGTCA 59.653 47.619 0.00 0.00 44.61 3.58
2622 2680 2.224499 TGAGGCAGTAGCATGTTGTCAA 60.224 45.455 0.00 0.00 44.61 3.18
2623 2681 2.813754 GAGGCAGTAGCATGTTGTCAAA 59.186 45.455 0.00 0.00 44.61 2.69
2624 2682 2.554032 AGGCAGTAGCATGTTGTCAAAC 59.446 45.455 0.00 0.00 44.61 2.93
2625 2683 2.554032 GGCAGTAGCATGTTGTCAAACT 59.446 45.455 0.00 0.00 44.61 2.66
2644 2727 8.391106 GTCAAACTACGATTTCTATGCATTCTT 58.609 33.333 3.54 0.00 0.00 2.52
2737 2820 4.444838 TACGCGGCGATTGTGGCT 62.445 61.111 30.94 6.22 0.00 4.75
2782 2865 3.214328 CCCTATGCTATGGGTGACAAAC 58.786 50.000 0.00 0.00 38.65 2.93
2977 3060 0.037326 CAAACCTGAGAGGCGCACTA 60.037 55.000 10.83 0.00 39.63 2.74
3042 3125 5.392767 TCACTTTGTTAACAGGTTTGCAA 57.607 34.783 8.56 0.00 0.00 4.08
3044 3127 4.566360 CACTTTGTTAACAGGTTTGCAAGG 59.434 41.667 8.56 0.00 0.00 3.61
3088 3171 1.455217 ATGCTTCATGCCCTGAGCC 60.455 57.895 0.00 0.00 42.71 4.70
3089 3172 1.934459 ATGCTTCATGCCCTGAGCCT 61.934 55.000 0.00 0.00 42.71 4.58
3091 3174 1.605992 CTTCATGCCCTGAGCCTGA 59.394 57.895 0.00 0.00 43.43 3.86
3092 3175 3.824815 TCATGCCCTGAGCCTGAA 58.175 55.556 0.00 0.00 42.35 3.02
3093 3176 2.077579 TCATGCCCTGAGCCTGAAA 58.922 52.632 0.00 0.00 42.35 2.69
3149 3234 2.547211 CGTGAGAGTCGTAACGGGATAT 59.453 50.000 7.22 0.00 32.55 1.63
3419 3524 3.917329 GGCTGACCTTAGTTCAAAACC 57.083 47.619 0.00 0.00 0.00 3.27
3447 3552 2.930826 TATTTTGGATCGGAGGGAGC 57.069 50.000 0.00 0.00 0.00 4.70
3452 3557 0.468214 TGGATCGGAGGGAGCACTAG 60.468 60.000 0.00 0.00 30.89 2.57
3623 3728 8.641498 ACTTCTTCAGGAAATTCATATGTTGT 57.359 30.769 1.90 0.00 33.07 3.32
3674 3779 0.472352 TCCCCTACCACACCGAAGTT 60.472 55.000 0.00 0.00 0.00 2.66
3782 3887 0.608856 TCGGCTACTTGGTGTACCGA 60.609 55.000 0.00 0.00 44.40 4.69
3807 3993 8.621532 AAACCAGGTATATACAGCATATGTTG 57.378 34.615 17.05 17.05 39.96 3.33
3820 4006 8.510243 ACAGCATATGTTGATAACTTGATTGA 57.490 30.769 24.34 0.00 39.96 2.57
3834 4053 6.710597 ACTTGATTGATCATCCATGAAAGG 57.289 37.500 0.00 0.00 40.69 3.11
3835 4054 6.429151 ACTTGATTGATCATCCATGAAAGGA 58.571 36.000 0.00 0.00 40.69 3.36
3837 4056 7.230913 ACTTGATTGATCATCCATGAAAGGATC 59.769 37.037 12.84 12.84 45.16 3.36
3844 4063 1.134521 TCCATGAAAGGATCGAACGGG 60.135 52.381 0.00 0.00 31.23 5.28
4127 4348 4.576879 CCCAGGTCTCATCATCATACATG 58.423 47.826 0.00 0.00 0.00 3.21
4129 4350 3.678548 CAGGTCTCATCATCATACATGCG 59.321 47.826 0.00 0.00 0.00 4.73
4130 4351 2.414481 GGTCTCATCATCATACATGCGC 59.586 50.000 0.00 0.00 0.00 6.09
4134 4355 3.404899 TCATCATCATACATGCGCACAT 58.595 40.909 14.90 6.30 36.79 3.21
4147 4368 4.635833 TGCGCACATACATTCATTCATT 57.364 36.364 5.66 0.00 0.00 2.57
4151 4372 5.116528 GCGCACATACATTCATTCATTCATG 59.883 40.000 0.30 0.00 0.00 3.07
4159 4380 4.359971 TTCATTCATTCATGGCACTTCG 57.640 40.909 0.00 0.00 0.00 3.79
4174 4395 4.282873 GCACTTCGTTTCCTCTTTGAAAG 58.717 43.478 0.00 0.00 35.04 2.62
4574 4802 9.837525 AATCTCGACCTTAATTATACGTGTATC 57.162 33.333 0.00 0.00 0.00 2.24
4676 4909 7.556996 TGTATGTTGTAGGTACAGGTTTGTTTT 59.443 33.333 0.00 0.00 38.76 2.43
4739 4973 3.596214 TGGCTTACGATTTCACCTTCTC 58.404 45.455 0.00 0.00 0.00 2.87
4741 4975 4.192317 GGCTTACGATTTCACCTTCTCAT 58.808 43.478 0.00 0.00 0.00 2.90
4747 4981 8.610248 TTACGATTTCACCTTCTCATGTTAAA 57.390 30.769 0.00 0.00 0.00 1.52
4748 4982 6.899114 ACGATTTCACCTTCTCATGTTAAAC 58.101 36.000 0.00 0.00 0.00 2.01
4749 4983 6.485313 ACGATTTCACCTTCTCATGTTAAACA 59.515 34.615 0.00 0.00 0.00 2.83
4750 4984 7.174946 ACGATTTCACCTTCTCATGTTAAACAT 59.825 33.333 0.00 0.00 39.91 2.71
4768 5002 9.498307 GTTAAACATAAAATGATGGTAACCTCG 57.502 33.333 0.00 0.00 33.32 4.63
4820 5066 8.138365 TCCACTTCAAGTAATCGCAAATATAC 57.862 34.615 0.00 0.00 0.00 1.47
4847 5093 2.168054 CCGGTGTGGATTCGGTTTC 58.832 57.895 0.00 0.00 42.00 2.78
4851 5097 1.728425 GGTGTGGATTCGGTTTCGTAC 59.272 52.381 0.00 0.00 37.69 3.67
4852 5098 2.611224 GGTGTGGATTCGGTTTCGTACT 60.611 50.000 0.00 0.00 37.69 2.73
4853 5099 2.410730 GTGTGGATTCGGTTTCGTACTG 59.589 50.000 0.00 0.00 37.69 2.74
4854 5100 1.392510 GTGGATTCGGTTTCGTACTGC 59.607 52.381 0.00 0.00 37.69 4.40
4855 5101 1.274167 TGGATTCGGTTTCGTACTGCT 59.726 47.619 0.00 0.00 37.69 4.24
4856 5102 1.925185 GGATTCGGTTTCGTACTGCTC 59.075 52.381 0.00 0.00 37.69 4.26
4857 5103 2.602878 GATTCGGTTTCGTACTGCTCA 58.397 47.619 0.00 0.00 37.69 4.26
4858 5104 2.512485 TTCGGTTTCGTACTGCTCAA 57.488 45.000 0.00 0.00 37.69 3.02
4860 5106 2.129607 TCGGTTTCGTACTGCTCAAAC 58.870 47.619 0.00 0.00 37.69 2.93
4861 5107 2.132762 CGGTTTCGTACTGCTCAAACT 58.867 47.619 0.00 0.00 0.00 2.66
4862 5108 3.004629 TCGGTTTCGTACTGCTCAAACTA 59.995 43.478 0.00 0.00 37.69 2.24
4863 5109 3.924686 CGGTTTCGTACTGCTCAAACTAT 59.075 43.478 0.00 0.00 0.00 2.12
4864 5110 5.097529 CGGTTTCGTACTGCTCAAACTATA 58.902 41.667 0.00 0.00 0.00 1.31
4865 5111 5.747197 CGGTTTCGTACTGCTCAAACTATAT 59.253 40.000 0.00 0.00 0.00 0.86
4866 5112 6.074994 CGGTTTCGTACTGCTCAAACTATATC 60.075 42.308 0.00 0.00 0.00 1.63
4867 5113 6.979238 GGTTTCGTACTGCTCAAACTATATCT 59.021 38.462 0.00 0.00 0.00 1.98
4868 5114 7.491696 GGTTTCGTACTGCTCAAACTATATCTT 59.508 37.037 0.00 0.00 0.00 2.40
4869 5115 9.512435 GTTTCGTACTGCTCAAACTATATCTTA 57.488 33.333 0.00 0.00 0.00 2.10
4898 5144 7.946381 ATATGGAAGAAAGAAAAAGAGACCC 57.054 36.000 0.00 0.00 0.00 4.46
4899 5145 5.124036 TGGAAGAAAGAAAAAGAGACCCA 57.876 39.130 0.00 0.00 0.00 4.51
4900 5146 5.133221 TGGAAGAAAGAAAAAGAGACCCAG 58.867 41.667 0.00 0.00 0.00 4.45
4901 5147 4.022762 GGAAGAAAGAAAAAGAGACCCAGC 60.023 45.833 0.00 0.00 0.00 4.85
4902 5148 4.170468 AGAAAGAAAAAGAGACCCAGCA 57.830 40.909 0.00 0.00 0.00 4.41
4903 5149 4.140536 AGAAAGAAAAAGAGACCCAGCAG 58.859 43.478 0.00 0.00 0.00 4.24
4904 5150 1.902938 AGAAAAAGAGACCCAGCAGC 58.097 50.000 0.00 0.00 0.00 5.25
4905 5151 0.519077 GAAAAAGAGACCCAGCAGCG 59.481 55.000 0.00 0.00 0.00 5.18
4906 5152 0.108585 AAAAAGAGACCCAGCAGCGA 59.891 50.000 0.00 0.00 0.00 4.93
4907 5153 0.321122 AAAAGAGACCCAGCAGCGAG 60.321 55.000 0.00 0.00 0.00 5.03
4908 5154 1.188219 AAAGAGACCCAGCAGCGAGA 61.188 55.000 0.00 0.00 0.00 4.04
4909 5155 1.882989 AAGAGACCCAGCAGCGAGAC 61.883 60.000 0.00 0.00 0.00 3.36
4910 5156 2.601666 AGACCCAGCAGCGAGACA 60.602 61.111 0.00 0.00 0.00 3.41
4911 5157 2.125753 GACCCAGCAGCGAGACAG 60.126 66.667 0.00 0.00 0.00 3.51
4912 5158 2.601666 ACCCAGCAGCGAGACAGA 60.602 61.111 0.00 0.00 0.00 3.41
4913 5159 1.954362 GACCCAGCAGCGAGACAGAT 61.954 60.000 0.00 0.00 0.00 2.90
4914 5160 0.684479 ACCCAGCAGCGAGACAGATA 60.684 55.000 0.00 0.00 0.00 1.98
4915 5161 0.031857 CCCAGCAGCGAGACAGATAG 59.968 60.000 0.00 0.00 0.00 2.08
4916 5162 0.597118 CCAGCAGCGAGACAGATAGC 60.597 60.000 0.00 0.00 0.00 2.97
4917 5163 0.385029 CAGCAGCGAGACAGATAGCT 59.615 55.000 0.00 0.00 41.07 3.32
4939 5185 3.214328 GTTGGATGCGGATTTGGATACT 58.786 45.455 0.00 0.00 37.61 2.12
4973 5219 1.204704 TCGGACATGAGTAACAGCCTG 59.795 52.381 0.00 0.00 0.00 4.85
4979 5225 2.724977 TGAGTAACAGCCTGAAGTCG 57.275 50.000 0.00 0.00 0.00 4.18
4983 5229 2.367567 AGTAACAGCCTGAAGTCGGAAA 59.632 45.455 0.00 0.00 0.00 3.13
4984 5230 2.568623 AACAGCCTGAAGTCGGAAAT 57.431 45.000 0.00 0.00 0.00 2.17
4985 5231 1.813513 ACAGCCTGAAGTCGGAAATG 58.186 50.000 0.00 0.00 0.00 2.32
4986 5232 1.347707 ACAGCCTGAAGTCGGAAATGA 59.652 47.619 0.00 0.00 0.00 2.57
4987 5233 1.734465 CAGCCTGAAGTCGGAAATGAC 59.266 52.381 0.00 0.00 39.21 3.06
4988 5234 1.347707 AGCCTGAAGTCGGAAATGACA 59.652 47.619 0.00 0.00 41.41 3.58
4989 5235 2.026822 AGCCTGAAGTCGGAAATGACAT 60.027 45.455 0.00 0.00 41.41 3.06
4990 5236 3.197766 AGCCTGAAGTCGGAAATGACATA 59.802 43.478 0.00 0.00 41.41 2.29
4992 5238 4.576463 GCCTGAAGTCGGAAATGACATATT 59.424 41.667 0.00 0.00 41.41 1.28
4993 5239 5.504665 GCCTGAAGTCGGAAATGACATATTG 60.505 44.000 0.00 0.00 41.41 1.90
4996 5286 4.882671 AGTCGGAAATGACATATTGCAC 57.117 40.909 0.00 0.00 41.41 4.57
5009 5299 5.676552 ACATATTGCACCTTAACCGATGTA 58.323 37.500 0.00 0.00 0.00 2.29
5010 5300 6.296026 ACATATTGCACCTTAACCGATGTAT 58.704 36.000 0.00 0.00 0.00 2.29
5011 5301 7.446769 ACATATTGCACCTTAACCGATGTATA 58.553 34.615 0.00 0.00 0.00 1.47
5015 5305 4.871557 TGCACCTTAACCGATGTATACAAC 59.128 41.667 10.14 6.34 0.00 3.32
5018 5308 6.757947 GCACCTTAACCGATGTATACAACTAA 59.242 38.462 10.14 1.97 0.00 2.24
5020 5310 8.814235 CACCTTAACCGATGTATACAACTAAAG 58.186 37.037 10.14 8.84 0.00 1.85
5025 5379 8.589335 AACCGATGTATACAACTAAAGCTATG 57.411 34.615 10.14 0.00 0.00 2.23
5027 5381 6.868864 CCGATGTATACAACTAAAGCTATGCT 59.131 38.462 10.14 0.00 42.56 3.79
5031 5385 9.613428 ATGTATACAACTAAAGCTATGCTCAAA 57.387 29.630 10.14 0.00 38.25 2.69
5064 5418 9.871238 AAGTAGTAATACTTGTACACATTCAGG 57.129 33.333 14.43 0.00 38.71 3.86
5074 5428 9.733556 ACTTGTACACATTCAGGATACATAAAA 57.266 29.630 0.00 0.00 41.41 1.52
5075 5429 9.988350 CTTGTACACATTCAGGATACATAAAAC 57.012 33.333 0.00 0.00 41.41 2.43
5076 5430 9.508642 TTGTACACATTCAGGATACATAAAACA 57.491 29.630 0.00 0.00 41.41 2.83
5077 5431 9.161629 TGTACACATTCAGGATACATAAAACAG 57.838 33.333 0.00 0.00 41.41 3.16
5078 5432 9.162764 GTACACATTCAGGATACATAAAACAGT 57.837 33.333 0.00 0.00 41.41 3.55
5080 5434 7.665559 ACACATTCAGGATACATAAAACAGTGT 59.334 33.333 0.00 0.00 41.41 3.55
5085 5442 7.913789 TCAGGATACATAAAACAGTGTAAGGT 58.086 34.615 0.00 0.00 34.77 3.50
5118 5475 8.532977 AACCATAATAAAACATTGACAAGCAC 57.467 30.769 0.00 0.00 0.00 4.40
5119 5476 7.665690 ACCATAATAAAACATTGACAAGCACA 58.334 30.769 0.00 0.00 0.00 4.57
5122 5479 9.142515 CATAATAAAACATTGACAAGCACATGT 57.857 29.630 0.00 0.00 35.90 3.21
5123 5480 7.410800 AATAAAACATTGACAAGCACATGTG 57.589 32.000 21.83 21.83 32.44 3.21
5140 5497 7.566760 CACATGTGCCATCTTATAAAGGTAA 57.433 36.000 13.94 0.00 0.00 2.85
5142 5499 7.066887 CACATGTGCCATCTTATAAAGGTAACA 59.933 37.037 13.94 9.34 41.41 2.41
5236 5593 5.818136 TTCCGGCTAGAAAAATCAGATTG 57.182 39.130 0.00 0.00 0.00 2.67
5237 5594 3.627577 TCCGGCTAGAAAAATCAGATTGC 59.372 43.478 0.00 0.00 0.00 3.56
5238 5595 3.629398 CCGGCTAGAAAAATCAGATTGCT 59.371 43.478 0.00 0.00 0.00 3.91
5239 5596 4.260948 CCGGCTAGAAAAATCAGATTGCTC 60.261 45.833 0.00 0.00 0.00 4.26
5248 5605 8.504815 AGAAAAATCAGATTGCTCATATCATCG 58.495 33.333 0.00 0.00 0.00 3.84
5249 5606 6.738832 AAATCAGATTGCTCATATCATCGG 57.261 37.500 0.00 0.00 0.00 4.18
5261 5618 9.101655 TGCTCATATCATCGGATGTTAATAATG 57.898 33.333 17.01 9.66 34.89 1.90
5262 5619 9.102757 GCTCATATCATCGGATGTTAATAATGT 57.897 33.333 17.01 0.00 34.89 2.71
5286 5643 8.847196 TGTCATAGCATATATCGTATCCTAACC 58.153 37.037 0.00 0.00 0.00 2.85
5287 5644 8.016229 GTCATAGCATATATCGTATCCTAACCG 58.984 40.741 0.00 0.00 0.00 4.44
5288 5645 5.769484 AGCATATATCGTATCCTAACCGG 57.231 43.478 0.00 0.00 0.00 5.28
5289 5646 5.198965 AGCATATATCGTATCCTAACCGGT 58.801 41.667 0.00 0.00 0.00 5.28
5290 5647 5.298777 AGCATATATCGTATCCTAACCGGTC 59.701 44.000 8.04 0.00 0.00 4.79
5291 5648 5.298777 GCATATATCGTATCCTAACCGGTCT 59.701 44.000 8.04 0.22 0.00 3.85
5292 5649 6.484643 GCATATATCGTATCCTAACCGGTCTA 59.515 42.308 8.04 1.62 0.00 2.59
5293 5650 7.307870 GCATATATCGTATCCTAACCGGTCTAG 60.308 44.444 8.04 11.90 0.00 2.43
5294 5651 3.131709 TCGTATCCTAACCGGTCTAGG 57.868 52.381 25.24 25.24 37.82 3.02
5300 5657 3.985127 TCCTAACCGGTCTAGGATTTCA 58.015 45.455 27.76 14.67 40.05 2.69
5301 5658 4.355549 TCCTAACCGGTCTAGGATTTCAA 58.644 43.478 27.76 14.18 40.05 2.69
5302 5659 4.778958 TCCTAACCGGTCTAGGATTTCAAA 59.221 41.667 27.76 13.68 40.05 2.69
5303 5660 4.874396 CCTAACCGGTCTAGGATTTCAAAC 59.126 45.833 26.28 0.00 38.63 2.93
5305 5662 4.569719 ACCGGTCTAGGATTTCAAACAT 57.430 40.909 0.00 0.00 34.73 2.71
5306 5663 5.687166 ACCGGTCTAGGATTTCAAACATA 57.313 39.130 0.00 0.00 34.73 2.29
5307 5664 6.057321 ACCGGTCTAGGATTTCAAACATAA 57.943 37.500 0.00 0.00 34.73 1.90
5311 5670 7.409697 CGGTCTAGGATTTCAAACATAATGTG 58.590 38.462 0.00 0.00 0.00 3.21
5313 5672 8.398665 GGTCTAGGATTTCAAACATAATGTGTC 58.601 37.037 0.00 0.00 41.14 3.67
5331 5690 6.214191 TGTGTCTAGATGTCCAAATCTCTC 57.786 41.667 0.00 0.00 37.98 3.20
5338 5697 3.057969 TGTCCAAATCTCTCGCACAAT 57.942 42.857 0.00 0.00 0.00 2.71
5346 5705 6.591448 CCAAATCTCTCGCACAATATATGCTA 59.409 38.462 9.52 0.00 41.10 3.49
5387 5746 5.708736 TCAGGCAGAAATTATCCTAACCA 57.291 39.130 0.00 0.00 0.00 3.67
5420 5787 2.033448 TGGCATCCCACAACGTCC 59.967 61.111 0.00 0.00 35.79 4.79
5421 5788 2.750237 GGCATCCCACAACGTCCC 60.750 66.667 0.00 0.00 0.00 4.46
5422 5789 2.750237 GCATCCCACAACGTCCCC 60.750 66.667 0.00 0.00 0.00 4.81
5423 5790 2.753701 CATCCCACAACGTCCCCA 59.246 61.111 0.00 0.00 0.00 4.96
5424 5791 1.674322 CATCCCACAACGTCCCCAC 60.674 63.158 0.00 0.00 0.00 4.61
5440 5807 6.359480 GTCCCCACGAAACTCATAAATTAG 57.641 41.667 0.00 0.00 0.00 1.73
5441 5808 5.878669 GTCCCCACGAAACTCATAAATTAGT 59.121 40.000 0.00 0.00 0.00 2.24
5442 5809 6.036844 GTCCCCACGAAACTCATAAATTAGTC 59.963 42.308 0.00 0.00 0.00 2.59
5443 5810 5.296035 CCCCACGAAACTCATAAATTAGTCC 59.704 44.000 0.00 0.00 0.00 3.85
5444 5811 5.878116 CCCACGAAACTCATAAATTAGTCCA 59.122 40.000 0.00 0.00 0.00 4.02
5445 5812 6.542370 CCCACGAAACTCATAAATTAGTCCAT 59.458 38.462 0.00 0.00 0.00 3.41
5446 5813 7.713507 CCCACGAAACTCATAAATTAGTCCATA 59.286 37.037 0.00 0.00 0.00 2.74
5447 5814 9.104965 CCACGAAACTCATAAATTAGTCCATAA 57.895 33.333 0.00 0.00 0.00 1.90
5462 5829 6.199937 AGTCCATAATTTGTCATCACTTGC 57.800 37.500 0.00 0.00 0.00 4.01
5463 5830 5.126061 AGTCCATAATTTGTCATCACTTGCC 59.874 40.000 0.00 0.00 0.00 4.52
5464 5831 5.126061 GTCCATAATTTGTCATCACTTGCCT 59.874 40.000 0.00 0.00 0.00 4.75
5465 5832 6.318648 GTCCATAATTTGTCATCACTTGCCTA 59.681 38.462 0.00 0.00 0.00 3.93
5466 5833 6.889177 TCCATAATTTGTCATCACTTGCCTAA 59.111 34.615 0.00 0.00 0.00 2.69
5467 5834 7.395772 TCCATAATTTGTCATCACTTGCCTAAA 59.604 33.333 0.00 0.00 0.00 1.85
5468 5835 8.034215 CCATAATTTGTCATCACTTGCCTAAAA 58.966 33.333 0.00 0.00 0.00 1.52
5469 5836 8.863049 CATAATTTGTCATCACTTGCCTAAAAC 58.137 33.333 0.00 0.00 0.00 2.43
5470 5837 6.655078 ATTTGTCATCACTTGCCTAAAACT 57.345 33.333 0.00 0.00 0.00 2.66
5471 5838 5.437289 TTGTCATCACTTGCCTAAAACTG 57.563 39.130 0.00 0.00 0.00 3.16
5472 5839 4.713553 TGTCATCACTTGCCTAAAACTGA 58.286 39.130 0.00 0.00 0.00 3.41
5473 5840 5.129634 TGTCATCACTTGCCTAAAACTGAA 58.870 37.500 0.00 0.00 0.00 3.02
5474 5841 5.592282 TGTCATCACTTGCCTAAAACTGAAA 59.408 36.000 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.484326 GCGAAAGAAAAACACATTTTAAAACAT 57.516 25.926 1.97 0.00 41.27 2.71
7 8 7.958025 GGCGAAAGAAAAACACATTTTAAAACA 59.042 29.630 1.97 0.00 41.27 2.83
8 9 7.161257 CGGCGAAAGAAAAACACATTTTAAAAC 59.839 33.333 0.00 0.00 41.27 2.43
9 10 7.174082 CGGCGAAAGAAAAACACATTTTAAAA 58.826 30.769 0.00 2.51 41.27 1.52
10 11 6.697152 CGGCGAAAGAAAAACACATTTTAAA 58.303 32.000 0.00 0.00 41.27 1.52
11 12 5.276442 GCGGCGAAAGAAAAACACATTTTAA 60.276 36.000 12.98 0.00 41.27 1.52
12 13 4.207429 GCGGCGAAAGAAAAACACATTTTA 59.793 37.500 12.98 0.00 41.27 1.52
13 14 3.000825 GCGGCGAAAGAAAAACACATTTT 59.999 39.130 12.98 0.00 43.85 1.82
14 15 2.538037 GCGGCGAAAGAAAAACACATTT 59.462 40.909 12.98 0.00 0.00 2.32
15 16 2.124122 GCGGCGAAAGAAAAACACATT 58.876 42.857 12.98 0.00 0.00 2.71
16 17 1.336755 AGCGGCGAAAGAAAAACACAT 59.663 42.857 12.98 0.00 0.00 3.21
17 18 0.736053 AGCGGCGAAAGAAAAACACA 59.264 45.000 12.98 0.00 0.00 3.72
18 19 2.032290 AGTAGCGGCGAAAGAAAAACAC 60.032 45.455 12.98 0.00 0.00 3.32
19 20 2.215196 AGTAGCGGCGAAAGAAAAACA 58.785 42.857 12.98 0.00 0.00 2.83
20 21 2.479275 AGAGTAGCGGCGAAAGAAAAAC 59.521 45.455 12.98 0.00 0.00 2.43
21 22 2.735134 GAGAGTAGCGGCGAAAGAAAAA 59.265 45.455 12.98 0.00 0.00 1.94
22 23 2.334838 GAGAGTAGCGGCGAAAGAAAA 58.665 47.619 12.98 0.00 0.00 2.29
23 24 1.403780 GGAGAGTAGCGGCGAAAGAAA 60.404 52.381 12.98 0.00 0.00 2.52
24 25 0.172803 GGAGAGTAGCGGCGAAAGAA 59.827 55.000 12.98 0.00 0.00 2.52
25 26 1.664321 GGGAGAGTAGCGGCGAAAGA 61.664 60.000 12.98 0.00 0.00 2.52
26 27 1.227002 GGGAGAGTAGCGGCGAAAG 60.227 63.158 12.98 0.00 0.00 2.62
27 28 0.394762 TAGGGAGAGTAGCGGCGAAA 60.395 55.000 12.98 0.00 0.00 3.46
28 29 0.818445 CTAGGGAGAGTAGCGGCGAA 60.818 60.000 12.98 0.00 0.00 4.70
29 30 1.227883 CTAGGGAGAGTAGCGGCGA 60.228 63.158 12.98 0.00 0.00 5.54
30 31 1.508808 GACTAGGGAGAGTAGCGGCG 61.509 65.000 0.51 0.51 0.00 6.46
31 32 1.174078 GGACTAGGGAGAGTAGCGGC 61.174 65.000 0.00 0.00 0.00 6.53
32 33 0.183014 TGGACTAGGGAGAGTAGCGG 59.817 60.000 0.00 0.00 0.00 5.52
33 34 1.141254 TCTGGACTAGGGAGAGTAGCG 59.859 57.143 0.00 0.00 0.00 4.26
34 35 3.518992 ATCTGGACTAGGGAGAGTAGC 57.481 52.381 0.00 0.00 0.00 3.58
35 36 6.800072 AAAAATCTGGACTAGGGAGAGTAG 57.200 41.667 0.00 0.00 0.00 2.57
76 77 0.040958 AAGTGCGCTTTGCTCGAAAG 60.041 50.000 9.73 0.00 46.63 2.62
77 78 0.316937 CAAGTGCGCTTTGCTCGAAA 60.317 50.000 10.47 0.00 46.63 3.46
78 79 1.279539 CAAGTGCGCTTTGCTCGAA 59.720 52.632 10.47 0.00 46.63 3.71
79 80 1.887242 ACAAGTGCGCTTTGCTCGA 60.887 52.632 20.19 0.00 46.63 4.04
80 81 1.723542 CACAAGTGCGCTTTGCTCG 60.724 57.895 20.19 0.90 46.63 5.03
81 82 1.370900 CCACAAGTGCGCTTTGCTC 60.371 57.895 20.19 1.34 46.63 4.26
82 83 1.823470 TCCACAAGTGCGCTTTGCT 60.823 52.632 20.19 6.79 46.63 3.91
83 84 1.658409 GTCCACAAGTGCGCTTTGC 60.658 57.895 20.19 4.78 46.70 3.68
84 85 0.040958 GAGTCCACAAGTGCGCTTTG 60.041 55.000 10.47 19.13 31.49 2.77
85 86 0.179045 AGAGTCCACAAGTGCGCTTT 60.179 50.000 10.47 0.00 31.49 3.51
86 87 0.601311 GAGAGTCCACAAGTGCGCTT 60.601 55.000 9.73 6.71 34.82 4.68
87 88 1.005630 GAGAGTCCACAAGTGCGCT 60.006 57.895 9.73 0.00 0.00 5.92
88 89 0.601311 AAGAGAGTCCACAAGTGCGC 60.601 55.000 0.00 0.00 0.00 6.09
89 90 1.871080 AAAGAGAGTCCACAAGTGCG 58.129 50.000 0.00 0.00 0.00 5.34
107 108 5.295787 CACCACTAGTGTGCTTGACTAAAAA 59.704 40.000 21.18 0.00 42.54 1.94
108 109 4.814234 CACCACTAGTGTGCTTGACTAAAA 59.186 41.667 21.18 0.00 42.54 1.52
109 110 4.377021 CACCACTAGTGTGCTTGACTAAA 58.623 43.478 21.18 0.00 42.54 1.85
110 111 3.244078 CCACCACTAGTGTGCTTGACTAA 60.244 47.826 21.18 0.00 45.74 2.24
111 112 2.299013 CCACCACTAGTGTGCTTGACTA 59.701 50.000 21.18 0.00 45.74 2.59
112 113 1.070758 CCACCACTAGTGTGCTTGACT 59.929 52.381 21.18 0.00 45.74 3.41
113 114 1.070134 TCCACCACTAGTGTGCTTGAC 59.930 52.381 21.18 0.00 45.74 3.18
114 115 1.070134 GTCCACCACTAGTGTGCTTGA 59.930 52.381 21.18 7.73 45.74 3.02
115 116 1.070758 AGTCCACCACTAGTGTGCTTG 59.929 52.381 21.18 11.92 45.74 4.01
116 117 1.070758 CAGTCCACCACTAGTGTGCTT 59.929 52.381 21.18 0.16 45.74 3.91
117 118 0.681733 CAGTCCACCACTAGTGTGCT 59.318 55.000 21.18 9.91 45.74 4.40
118 119 0.393077 ACAGTCCACCACTAGTGTGC 59.607 55.000 21.18 8.11 45.74 4.57
119 120 2.891580 AGTACAGTCCACCACTAGTGTG 59.108 50.000 21.18 17.47 45.74 3.82
120 121 2.891580 CAGTACAGTCCACCACTAGTGT 59.108 50.000 21.18 7.09 45.74 3.55
121 122 2.231478 CCAGTACAGTCCACCACTAGTG 59.769 54.545 16.34 16.34 46.83 2.74
122 123 2.526432 CCAGTACAGTCCACCACTAGT 58.474 52.381 0.00 0.00 32.21 2.57
123 124 1.204941 GCCAGTACAGTCCACCACTAG 59.795 57.143 0.00 0.00 32.21 2.57
124 125 1.263356 GCCAGTACAGTCCACCACTA 58.737 55.000 0.00 0.00 32.21 2.74
125 126 0.762842 TGCCAGTACAGTCCACCACT 60.763 55.000 0.00 0.00 34.67 4.00
126 127 0.107831 TTGCCAGTACAGTCCACCAC 59.892 55.000 0.00 0.00 0.00 4.16
127 128 0.396435 CTTGCCAGTACAGTCCACCA 59.604 55.000 0.00 0.00 0.00 4.17
128 129 0.685097 TCTTGCCAGTACAGTCCACC 59.315 55.000 0.00 0.00 0.00 4.61
129 130 2.037251 TCTTCTTGCCAGTACAGTCCAC 59.963 50.000 0.00 0.00 0.00 4.02
130 131 2.325484 TCTTCTTGCCAGTACAGTCCA 58.675 47.619 0.00 0.00 0.00 4.02
131 132 3.330267 CTTCTTCTTGCCAGTACAGTCC 58.670 50.000 0.00 0.00 0.00 3.85
132 133 2.739379 GCTTCTTCTTGCCAGTACAGTC 59.261 50.000 0.00 0.00 0.00 3.51
133 134 2.772287 GCTTCTTCTTGCCAGTACAGT 58.228 47.619 0.00 0.00 0.00 3.55
141 142 2.041115 GGACCGGCTTCTTCTTGCC 61.041 63.158 0.00 0.00 45.25 4.52
142 143 1.301677 CTGGACCGGCTTCTTCTTGC 61.302 60.000 0.00 0.00 0.00 4.01
143 144 1.301677 GCTGGACCGGCTTCTTCTTG 61.302 60.000 18.66 0.00 32.24 3.02
144 145 1.003233 GCTGGACCGGCTTCTTCTT 60.003 57.895 18.66 0.00 32.24 2.52
145 146 2.665603 GCTGGACCGGCTTCTTCT 59.334 61.111 18.66 0.00 32.24 2.85
146 147 2.436824 GGCTGGACCGGCTTCTTC 60.437 66.667 24.51 3.95 35.82 2.87
147 148 3.249189 TGGCTGGACCGGCTTCTT 61.249 61.111 24.51 0.00 43.94 2.52
148 149 3.710722 CTGGCTGGACCGGCTTCT 61.711 66.667 24.51 0.00 43.94 2.85
149 150 3.706373 TCTGGCTGGACCGGCTTC 61.706 66.667 24.51 9.83 45.54 3.86
150 151 4.021925 GTCTGGCTGGACCGGCTT 62.022 66.667 24.51 0.00 45.54 4.35
154 155 0.673644 AAAATCGTCTGGCTGGACCG 60.674 55.000 5.82 0.65 43.94 4.79
155 156 1.087501 GAAAATCGTCTGGCTGGACC 58.912 55.000 5.82 0.00 39.84 4.46
156 157 0.721718 CGAAAATCGTCTGGCTGGAC 59.278 55.000 0.00 0.00 34.72 4.02
157 158 0.391130 CCGAAAATCGTCTGGCTGGA 60.391 55.000 0.00 0.00 38.40 3.86
158 159 1.982073 GCCGAAAATCGTCTGGCTGG 61.982 60.000 0.00 0.00 42.44 4.85
159 160 1.425428 GCCGAAAATCGTCTGGCTG 59.575 57.895 0.00 0.00 42.44 4.85
160 161 1.745489 GGCCGAAAATCGTCTGGCT 60.745 57.895 1.20 0.00 45.06 4.75
161 162 2.761195 GGGCCGAAAATCGTCTGGC 61.761 63.158 0.00 0.00 44.98 4.85
162 163 2.461110 CGGGCCGAAAATCGTCTGG 61.461 63.158 24.41 0.00 38.40 3.86
180 181 1.414550 GCCAGACCCATCTTCTACCTC 59.585 57.143 0.00 0.00 30.42 3.85
206 207 2.170397 TGATCCAGAAGAGGCGCATTTA 59.830 45.455 10.83 0.00 0.00 1.40
279 280 4.063689 TGGTTTCTTGGCGTCGTAATAAA 58.936 39.130 0.00 0.00 0.00 1.40
292 293 1.075374 TGAGGGGATGGTGGTTTCTTG 59.925 52.381 0.00 0.00 0.00 3.02
318 321 1.849829 GGTTTCTTGGCGTCGTTTTTG 59.150 47.619 0.00 0.00 0.00 2.44
840 872 6.866010 TTAATCGACAGCATGCATCTTAAT 57.134 33.333 21.98 7.78 42.53 1.40
895 927 6.425210 AGATTTCATTCAGTCCATCGGATA 57.575 37.500 0.00 0.00 32.73 2.59
935 969 0.109597 CCCATGAAAGAACTGCGCAC 60.110 55.000 5.66 0.00 0.00 5.34
936 970 0.537143 ACCCATGAAAGAACTGCGCA 60.537 50.000 10.98 10.98 0.00 6.09
937 971 1.398390 CTACCCATGAAAGAACTGCGC 59.602 52.381 0.00 0.00 0.00 6.09
938 972 2.972625 TCTACCCATGAAAGAACTGCG 58.027 47.619 0.00 0.00 0.00 5.18
1297 1331 2.919602 ACAATGGTGGTTATCAGAGGGT 59.080 45.455 0.00 0.00 0.00 4.34
1616 1664 0.527565 GCACCCAAAGCCTGTACATG 59.472 55.000 0.00 0.00 0.00 3.21
1703 1751 5.119931 GGTAACAAACATGAACAGCATCA 57.880 39.130 0.00 0.00 34.15 3.07
1778 1831 3.079578 ACTCCTGCAACATGAAGATGTG 58.920 45.455 0.00 0.00 42.30 3.21
1870 1923 1.438651 TTGGAATCGAGCGAACAAGG 58.561 50.000 0.00 0.00 0.00 3.61
2095 2148 8.506168 TTTGAAGTGTAGAGAACATCAAAACT 57.494 30.769 4.92 0.00 41.09 2.66
2148 2201 6.085555 TGAATCGAACTAACTCAGAAGTGT 57.914 37.500 0.00 0.00 35.36 3.55
2201 2254 5.646467 TGAACGACAAGTGTAAAAGTAGC 57.354 39.130 0.00 0.00 0.00 3.58
2217 2270 2.475111 GTGTCGAGCTGAATTTGAACGA 59.525 45.455 0.00 0.00 0.00 3.85
2241 2294 7.401204 TCCATATATGCATATATAGGGCCTCTG 59.599 40.741 30.00 19.34 46.20 3.35
2500 2557 2.808543 GACAACGATGACCTTTTGAGCT 59.191 45.455 0.00 0.00 0.00 4.09
2558 2616 3.382865 TGCAATGTGCTGGTCAAAACTTA 59.617 39.130 1.43 0.00 45.31 2.24
2598 2656 2.238144 ACAACATGCTACTGCCTCAGAT 59.762 45.455 0.29 0.00 38.71 2.90
2604 2662 2.554032 AGTTTGACAACATGCTACTGCC 59.446 45.455 0.00 0.00 35.19 4.85
2605 2663 3.904136 AGTTTGACAACATGCTACTGC 57.096 42.857 0.00 0.00 35.05 4.40
2606 2664 4.684242 TCGTAGTTTGACAACATGCTACTG 59.316 41.667 0.00 0.00 35.05 2.74
2607 2665 4.878439 TCGTAGTTTGACAACATGCTACT 58.122 39.130 0.00 5.50 35.05 2.57
2608 2666 5.779806 ATCGTAGTTTGACAACATGCTAC 57.220 39.130 0.00 0.00 35.05 3.58
2609 2667 6.649141 AGAAATCGTAGTTTGACAACATGCTA 59.351 34.615 0.00 0.00 35.05 3.49
2610 2668 5.470098 AGAAATCGTAGTTTGACAACATGCT 59.530 36.000 0.00 0.00 35.05 3.79
2611 2669 5.689819 AGAAATCGTAGTTTGACAACATGC 58.310 37.500 0.00 0.00 35.05 4.06
2612 2670 7.426456 GCATAGAAATCGTAGTTTGACAACATG 59.574 37.037 0.00 0.00 35.05 3.21
2613 2671 7.119116 TGCATAGAAATCGTAGTTTGACAACAT 59.881 33.333 0.00 0.00 35.05 2.71
2614 2672 6.425417 TGCATAGAAATCGTAGTTTGACAACA 59.575 34.615 0.00 0.00 35.05 3.33
2615 2673 6.827641 TGCATAGAAATCGTAGTTTGACAAC 58.172 36.000 0.00 0.00 0.00 3.32
2616 2674 7.609760 ATGCATAGAAATCGTAGTTTGACAA 57.390 32.000 0.00 0.00 0.00 3.18
2617 2675 7.549134 AGAATGCATAGAAATCGTAGTTTGACA 59.451 33.333 0.00 0.00 0.00 3.58
2618 2676 7.910304 AGAATGCATAGAAATCGTAGTTTGAC 58.090 34.615 0.00 0.00 0.00 3.18
2619 2677 8.492673 AAGAATGCATAGAAATCGTAGTTTGA 57.507 30.769 0.00 0.00 0.00 2.69
2620 2678 9.214953 GAAAGAATGCATAGAAATCGTAGTTTG 57.785 33.333 0.00 0.00 0.00 2.93
2621 2679 8.398665 GGAAAGAATGCATAGAAATCGTAGTTT 58.601 33.333 0.00 0.00 0.00 2.66
2622 2680 7.770897 AGGAAAGAATGCATAGAAATCGTAGTT 59.229 33.333 0.00 0.00 0.00 2.24
2623 2681 7.275920 AGGAAAGAATGCATAGAAATCGTAGT 58.724 34.615 0.00 0.00 0.00 2.73
2624 2682 7.439356 TGAGGAAAGAATGCATAGAAATCGTAG 59.561 37.037 0.00 0.00 0.00 3.51
2625 2683 7.272244 TGAGGAAAGAATGCATAGAAATCGTA 58.728 34.615 0.00 0.00 0.00 3.43
2737 2820 3.386726 TCGAAGACTGAAGAACTTGGGAA 59.613 43.478 0.00 0.00 0.00 3.97
3002 3085 9.950496 ACAAAGTGAACTCTCTATGATTATTGT 57.050 29.630 0.00 0.00 0.00 2.71
3018 3101 5.164954 TGCAAACCTGTTAACAAAGTGAAC 58.835 37.500 10.03 4.39 0.00 3.18
3042 3125 0.897863 AAGCTCAGTCGTCAGCTCCT 60.898 55.000 0.00 0.00 45.58 3.69
3044 3127 0.038709 ACAAGCTCAGTCGTCAGCTC 60.039 55.000 0.00 0.00 45.58 4.09
3088 3171 6.348050 CGAACAAGGGATTCTTTCTCTTTCAG 60.348 42.308 0.00 0.00 42.87 3.02
3089 3172 5.470098 CGAACAAGGGATTCTTTCTCTTTCA 59.530 40.000 0.00 0.00 42.87 2.69
3091 3174 5.239525 CACGAACAAGGGATTCTTTCTCTTT 59.760 40.000 0.00 0.00 42.87 2.52
3092 3175 4.757149 CACGAACAAGGGATTCTTTCTCTT 59.243 41.667 0.00 0.00 46.57 2.85
3093 3176 4.319177 CACGAACAAGGGATTCTTTCTCT 58.681 43.478 0.00 0.00 36.41 3.10
3149 3234 1.379977 CAGGACCACGCTAGGGAGA 60.380 63.158 14.59 0.00 0.00 3.71
3338 3423 0.108615 CCTTGGGTCTAGTGAGCACG 60.109 60.000 0.00 0.00 42.05 5.34
3401 3486 2.096417 CGCGGTTTTGAACTAAGGTCAG 60.096 50.000 0.00 0.00 0.00 3.51
3419 3524 2.285602 CCGATCCAAAATAAGTGTCGCG 60.286 50.000 0.00 0.00 0.00 5.87
3447 3552 7.875041 CCATCATCAGTTAGTTAATCCCTAGTG 59.125 40.741 0.00 0.00 0.00 2.74
3452 3557 5.941788 ACCCATCATCAGTTAGTTAATCCC 58.058 41.667 0.00 0.00 0.00 3.85
3623 3728 1.568504 ATTCTGGCTCGTCCTGGTAA 58.431 50.000 0.00 0.00 34.80 2.85
3674 3779 1.741028 TGAACATGAGGACCTTGGGA 58.259 50.000 0.00 0.00 0.00 4.37
3782 3887 8.436778 TCAACATATGCTGTATATACCTGGTTT 58.563 33.333 3.84 0.00 36.98 3.27
3807 3993 9.894783 CTTTCATGGATGATCAATCAAGTTATC 57.105 33.333 0.00 0.00 40.69 1.75
3818 4004 4.961438 TCGATCCTTTCATGGATGATCA 57.039 40.909 0.00 0.00 46.00 2.92
3819 4005 4.151335 CGTTCGATCCTTTCATGGATGATC 59.849 45.833 0.31 0.00 46.00 2.92
3820 4006 4.060900 CGTTCGATCCTTTCATGGATGAT 58.939 43.478 0.31 0.00 46.00 2.45
3834 4053 3.127030 AGAAGAAAATTGCCCGTTCGATC 59.873 43.478 0.00 0.00 0.00 3.69
3835 4054 3.081804 AGAAGAAAATTGCCCGTTCGAT 58.918 40.909 0.00 0.00 0.00 3.59
3836 4055 2.500229 AGAAGAAAATTGCCCGTTCGA 58.500 42.857 0.00 0.00 0.00 3.71
3837 4056 2.989422 AGAAGAAAATTGCCCGTTCG 57.011 45.000 0.00 0.00 0.00 3.95
3844 4063 6.418956 CATGCATGCATTAGAAGAAAATTGC 58.581 36.000 30.32 0.00 33.90 3.56
4127 4348 4.600032 TGAATGAATGAATGTATGTGCGC 58.400 39.130 0.00 0.00 0.00 6.09
4129 4350 5.404366 GCCATGAATGAATGAATGTATGTGC 59.596 40.000 0.00 0.00 0.00 4.57
4130 4351 6.419710 GTGCCATGAATGAATGAATGTATGTG 59.580 38.462 0.00 0.00 0.00 3.21
4134 4355 6.458615 CGAAGTGCCATGAATGAATGAATGTA 60.459 38.462 0.00 0.00 0.00 2.29
4147 4368 1.347707 AGAGGAAACGAAGTGCCATGA 59.652 47.619 0.00 0.00 45.00 3.07
4151 4372 2.218603 TCAAAGAGGAAACGAAGTGCC 58.781 47.619 0.00 0.00 45.00 5.01
4159 4380 5.294060 TGCATTTTGCTTTCAAAGAGGAAAC 59.706 36.000 0.00 0.00 45.31 2.78
4174 4395 6.074782 CCAACATTCACAATTTTGCATTTTGC 60.075 34.615 0.00 0.00 45.29 3.68
4187 4408 0.383590 CACACGCCCAACATTCACAA 59.616 50.000 0.00 0.00 0.00 3.33
4191 4412 1.371635 GCACACACGCCCAACATTC 60.372 57.895 0.00 0.00 0.00 2.67
4211 4432 2.792290 CGATGAAGTCCTGCGCACG 61.792 63.158 5.66 1.98 0.00 5.34
4676 4909 2.158871 ACAGTTAGCAACTCGGAAACCA 60.159 45.455 0.00 0.00 40.46 3.67
4747 4981 5.820947 GGTCGAGGTTACCATCATTTTATGT 59.179 40.000 3.51 0.00 36.96 2.29
4748 4982 6.017934 CAGGTCGAGGTTACCATCATTTTATG 60.018 42.308 3.51 0.00 39.64 1.90
4749 4983 6.055588 CAGGTCGAGGTTACCATCATTTTAT 58.944 40.000 3.51 0.00 39.64 1.40
4750 4984 5.188163 TCAGGTCGAGGTTACCATCATTTTA 59.812 40.000 3.51 0.00 39.64 1.52
4753 4987 3.104512 TCAGGTCGAGGTTACCATCATT 58.895 45.455 3.51 0.00 39.64 2.57
4754 4988 2.431057 GTCAGGTCGAGGTTACCATCAT 59.569 50.000 3.51 0.00 39.64 2.45
4755 4989 1.822990 GTCAGGTCGAGGTTACCATCA 59.177 52.381 3.51 0.00 39.64 3.07
4756 4990 1.822990 TGTCAGGTCGAGGTTACCATC 59.177 52.381 3.51 0.00 39.64 3.51
4760 4994 3.314541 AATGTGTCAGGTCGAGGTTAC 57.685 47.619 0.00 0.00 0.00 2.50
4762 4996 2.158813 ACAAATGTGTCAGGTCGAGGTT 60.159 45.455 0.00 0.00 29.49 3.50
4763 4997 1.416401 ACAAATGTGTCAGGTCGAGGT 59.584 47.619 0.00 0.00 29.49 3.85
4764 4998 2.169832 ACAAATGTGTCAGGTCGAGG 57.830 50.000 0.00 0.00 29.49 4.63
4765 4999 3.121279 CGTTACAAATGTGTCAGGTCGAG 59.879 47.826 0.00 0.00 39.30 4.04
4766 5000 3.054166 CGTTACAAATGTGTCAGGTCGA 58.946 45.455 0.00 0.00 39.30 4.20
4767 5001 3.054166 TCGTTACAAATGTGTCAGGTCG 58.946 45.455 0.00 0.00 39.30 4.79
4768 5002 3.120649 GCTCGTTACAAATGTGTCAGGTC 60.121 47.826 0.00 0.00 39.30 3.85
4831 5077 1.728425 GTACGAAACCGAATCCACACC 59.272 52.381 0.00 0.00 0.00 4.16
4837 5083 2.602878 TGAGCAGTACGAAACCGAATC 58.397 47.619 0.00 0.00 0.00 2.52
4843 5089 7.988904 AGATATAGTTTGAGCAGTACGAAAC 57.011 36.000 0.00 0.00 0.00 2.78
4872 5118 9.462606 GGGTCTCTTTTTCTTTCTTCCATATAA 57.537 33.333 0.00 0.00 0.00 0.98
4873 5119 8.611257 TGGGTCTCTTTTTCTTTCTTCCATATA 58.389 33.333 0.00 0.00 0.00 0.86
4874 5120 7.470192 TGGGTCTCTTTTTCTTTCTTCCATAT 58.530 34.615 0.00 0.00 0.00 1.78
4875 5121 6.848069 TGGGTCTCTTTTTCTTTCTTCCATA 58.152 36.000 0.00 0.00 0.00 2.74
4876 5122 5.705400 TGGGTCTCTTTTTCTTTCTTCCAT 58.295 37.500 0.00 0.00 0.00 3.41
4877 5123 5.124036 TGGGTCTCTTTTTCTTTCTTCCA 57.876 39.130 0.00 0.00 0.00 3.53
4878 5124 4.022762 GCTGGGTCTCTTTTTCTTTCTTCC 60.023 45.833 0.00 0.00 0.00 3.46
4879 5125 4.580580 TGCTGGGTCTCTTTTTCTTTCTTC 59.419 41.667 0.00 0.00 0.00 2.87
4880 5126 4.536765 TGCTGGGTCTCTTTTTCTTTCTT 58.463 39.130 0.00 0.00 0.00 2.52
4881 5127 4.140536 CTGCTGGGTCTCTTTTTCTTTCT 58.859 43.478 0.00 0.00 0.00 2.52
4882 5128 3.304996 GCTGCTGGGTCTCTTTTTCTTTC 60.305 47.826 0.00 0.00 0.00 2.62
4883 5129 2.625314 GCTGCTGGGTCTCTTTTTCTTT 59.375 45.455 0.00 0.00 0.00 2.52
4884 5130 2.234143 GCTGCTGGGTCTCTTTTTCTT 58.766 47.619 0.00 0.00 0.00 2.52
4885 5131 1.879796 CGCTGCTGGGTCTCTTTTTCT 60.880 52.381 0.00 0.00 0.00 2.52
4886 5132 0.519077 CGCTGCTGGGTCTCTTTTTC 59.481 55.000 0.00 0.00 0.00 2.29
4887 5133 0.108585 TCGCTGCTGGGTCTCTTTTT 59.891 50.000 7.52 0.00 0.00 1.94
4888 5134 0.321122 CTCGCTGCTGGGTCTCTTTT 60.321 55.000 7.52 0.00 0.00 2.27
4889 5135 1.188219 TCTCGCTGCTGGGTCTCTTT 61.188 55.000 7.52 0.00 0.00 2.52
4890 5136 1.607756 TCTCGCTGCTGGGTCTCTT 60.608 57.895 7.52 0.00 0.00 2.85
4891 5137 2.036414 TCTCGCTGCTGGGTCTCT 59.964 61.111 7.52 0.00 0.00 3.10
4892 5138 2.183046 GTCTCGCTGCTGGGTCTC 59.817 66.667 7.52 0.00 0.00 3.36
4893 5139 2.601666 TGTCTCGCTGCTGGGTCT 60.602 61.111 7.52 0.00 0.00 3.85
4894 5140 1.954362 ATCTGTCTCGCTGCTGGGTC 61.954 60.000 7.52 1.57 0.00 4.46
4895 5141 0.684479 TATCTGTCTCGCTGCTGGGT 60.684 55.000 7.52 0.00 0.00 4.51
4896 5142 0.031857 CTATCTGTCTCGCTGCTGGG 59.968 60.000 0.85 0.85 0.00 4.45
4897 5143 0.597118 GCTATCTGTCTCGCTGCTGG 60.597 60.000 0.00 0.00 0.00 4.85
4898 5144 0.385029 AGCTATCTGTCTCGCTGCTG 59.615 55.000 0.00 0.00 0.00 4.41
4899 5145 0.385029 CAGCTATCTGTCTCGCTGCT 59.615 55.000 0.00 0.00 42.66 4.24
4900 5146 2.884146 CAGCTATCTGTCTCGCTGC 58.116 57.895 0.00 0.00 42.66 5.25
4909 5155 1.202568 TCCGCATCCAACAGCTATCTG 60.203 52.381 0.00 0.00 45.71 2.90
4910 5156 1.123077 TCCGCATCCAACAGCTATCT 58.877 50.000 0.00 0.00 0.00 1.98
4911 5157 2.175878 ATCCGCATCCAACAGCTATC 57.824 50.000 0.00 0.00 0.00 2.08
4912 5158 2.620115 CAAATCCGCATCCAACAGCTAT 59.380 45.455 0.00 0.00 0.00 2.97
4913 5159 2.016318 CAAATCCGCATCCAACAGCTA 58.984 47.619 0.00 0.00 0.00 3.32
4914 5160 0.813184 CAAATCCGCATCCAACAGCT 59.187 50.000 0.00 0.00 0.00 4.24
4915 5161 0.179129 CCAAATCCGCATCCAACAGC 60.179 55.000 0.00 0.00 0.00 4.40
4916 5162 1.462616 TCCAAATCCGCATCCAACAG 58.537 50.000 0.00 0.00 0.00 3.16
4917 5163 2.142356 ATCCAAATCCGCATCCAACA 57.858 45.000 0.00 0.00 0.00 3.33
4918 5164 3.003689 CAGTATCCAAATCCGCATCCAAC 59.996 47.826 0.00 0.00 0.00 3.77
4919 5165 3.213506 CAGTATCCAAATCCGCATCCAA 58.786 45.455 0.00 0.00 0.00 3.53
4920 5166 2.487086 CCAGTATCCAAATCCGCATCCA 60.487 50.000 0.00 0.00 0.00 3.41
4921 5167 2.154462 CCAGTATCCAAATCCGCATCC 58.846 52.381 0.00 0.00 0.00 3.51
4922 5168 2.851195 ACCAGTATCCAAATCCGCATC 58.149 47.619 0.00 0.00 0.00 3.91
4923 5169 3.297134 AACCAGTATCCAAATCCGCAT 57.703 42.857 0.00 0.00 0.00 4.73
4939 5185 1.202663 TGTCCGAATCCGACAAAACCA 60.203 47.619 2.07 0.00 38.22 3.67
4973 5219 5.266242 GTGCAATATGTCATTTCCGACTTC 58.734 41.667 0.00 0.00 36.82 3.01
4979 5225 6.273071 GGTTAAGGTGCAATATGTCATTTCC 58.727 40.000 0.00 0.00 0.00 3.13
4983 5229 4.776349 TCGGTTAAGGTGCAATATGTCAT 58.224 39.130 0.00 0.00 0.00 3.06
4984 5230 4.209307 TCGGTTAAGGTGCAATATGTCA 57.791 40.909 0.00 0.00 0.00 3.58
4985 5231 4.574828 ACATCGGTTAAGGTGCAATATGTC 59.425 41.667 0.00 0.00 0.00 3.06
4986 5232 4.523083 ACATCGGTTAAGGTGCAATATGT 58.477 39.130 0.00 0.00 0.00 2.29
4987 5233 6.801539 ATACATCGGTTAAGGTGCAATATG 57.198 37.500 0.00 0.00 0.00 1.78
4988 5234 7.446769 TGTATACATCGGTTAAGGTGCAATAT 58.553 34.615 0.08 0.00 0.00 1.28
4989 5235 6.818233 TGTATACATCGGTTAAGGTGCAATA 58.182 36.000 0.08 0.00 0.00 1.90
4990 5236 5.676552 TGTATACATCGGTTAAGGTGCAAT 58.323 37.500 0.08 0.00 0.00 3.56
4992 5238 4.739587 TGTATACATCGGTTAAGGTGCA 57.260 40.909 0.08 0.00 0.00 4.57
4993 5239 5.114081 AGTTGTATACATCGGTTAAGGTGC 58.886 41.667 6.36 0.00 0.00 5.01
4996 5286 7.709613 AGCTTTAGTTGTATACATCGGTTAAGG 59.290 37.037 6.36 3.50 0.00 2.69
5009 5299 9.177608 TCATTTTGAGCATAGCTTTAGTTGTAT 57.822 29.630 0.00 0.00 39.88 2.29
5010 5300 8.560355 TCATTTTGAGCATAGCTTTAGTTGTA 57.440 30.769 0.00 0.00 39.88 2.41
5011 5301 7.452880 TCATTTTGAGCATAGCTTTAGTTGT 57.547 32.000 0.00 0.00 39.88 3.32
5052 5406 9.162764 ACTGTTTTATGTATCCTGAATGTGTAC 57.837 33.333 0.00 0.00 0.00 2.90
5054 5408 7.665559 ACACTGTTTTATGTATCCTGAATGTGT 59.334 33.333 0.00 0.00 0.00 3.72
5063 5417 7.767198 TGCTACCTTACACTGTTTTATGTATCC 59.233 37.037 0.00 0.00 31.55 2.59
5064 5418 8.712285 TGCTACCTTACACTGTTTTATGTATC 57.288 34.615 0.00 0.00 31.55 2.24
5066 5420 8.905660 TTTGCTACCTTACACTGTTTTATGTA 57.094 30.769 0.00 0.00 0.00 2.29
5094 5451 7.665690 TGTGCTTGTCAATGTTTTATTATGGT 58.334 30.769 0.00 0.00 0.00 3.55
5097 5454 9.142515 CACATGTGCTTGTCAATGTTTTATTAT 57.857 29.630 13.94 0.00 0.00 1.28
5098 5455 8.518151 CACATGTGCTTGTCAATGTTTTATTA 57.482 30.769 13.94 0.00 0.00 0.98
5122 5479 6.953101 TGAGTGTTACCTTTATAAGATGGCA 58.047 36.000 0.00 0.00 0.00 4.92
5123 5480 7.499232 ACATGAGTGTTACCTTTATAAGATGGC 59.501 37.037 0.00 0.00 34.01 4.40
5124 5481 8.830580 CACATGAGTGTTACCTTTATAAGATGG 58.169 37.037 0.00 0.00 40.92 3.51
5198 5555 8.653191 TCTAGCCGGAATATCCAATACTTTTAA 58.347 33.333 5.05 0.00 35.91 1.52
5204 5561 7.739498 TTTTTCTAGCCGGAATATCCAATAC 57.261 36.000 5.05 0.00 35.91 1.89
5205 5562 8.160765 TGATTTTTCTAGCCGGAATATCCAATA 58.839 33.333 5.05 0.00 35.91 1.90
5207 5564 6.361433 TGATTTTTCTAGCCGGAATATCCAA 58.639 36.000 5.05 0.00 35.91 3.53
5214 5571 4.096382 GCAATCTGATTTTTCTAGCCGGAA 59.904 41.667 5.05 0.00 0.00 4.30
5236 5593 9.102757 ACATTATTAACATCCGATGATATGAGC 57.897 33.333 15.47 0.00 0.00 4.26
5261 5618 8.016229 CGGTTAGGATACGATATATGCTATGAC 58.984 40.741 0.00 0.00 46.39 3.06
5262 5619 7.174426 CCGGTTAGGATACGATATATGCTATGA 59.826 40.741 0.00 0.00 45.00 2.15
5263 5620 7.040617 ACCGGTTAGGATACGATATATGCTATG 60.041 40.741 0.00 0.00 45.00 2.23
5274 5631 2.705658 TCCTAGACCGGTTAGGATACGA 59.294 50.000 27.76 14.67 41.30 3.43
5281 5638 5.484715 TGTTTGAAATCCTAGACCGGTTAG 58.515 41.667 9.42 12.31 0.00 2.34
5284 5641 4.569719 ATGTTTGAAATCCTAGACCGGT 57.430 40.909 6.92 6.92 0.00 5.28
5286 5643 7.065803 ACACATTATGTTTGAAATCCTAGACCG 59.934 37.037 0.00 0.00 38.98 4.79
5287 5644 8.281212 ACACATTATGTTTGAAATCCTAGACC 57.719 34.615 0.00 0.00 38.98 3.85
5288 5645 9.167311 AGACACATTATGTTTGAAATCCTAGAC 57.833 33.333 0.00 0.00 43.56 2.59
5292 5649 9.911788 ATCTAGACACATTATGTTTGAAATCCT 57.088 29.630 0.00 0.00 43.56 3.24
5293 5650 9.941664 CATCTAGACACATTATGTTTGAAATCC 57.058 33.333 0.00 0.00 43.56 3.01
5296 5653 8.946085 GGACATCTAGACACATTATGTTTGAAA 58.054 33.333 0.00 0.00 43.56 2.69
5297 5654 8.100164 TGGACATCTAGACACATTATGTTTGAA 58.900 33.333 0.00 0.00 43.56 2.69
5299 5656 7.848223 TGGACATCTAGACACATTATGTTTG 57.152 36.000 0.00 0.00 43.56 2.93
5300 5657 8.862325 TTTGGACATCTAGACACATTATGTTT 57.138 30.769 0.00 0.00 43.56 2.83
5301 5658 9.113838 GATTTGGACATCTAGACACATTATGTT 57.886 33.333 0.00 0.00 43.56 2.71
5302 5659 8.489489 AGATTTGGACATCTAGACACATTATGT 58.511 33.333 0.00 0.00 36.55 2.29
5303 5660 8.899427 AGATTTGGACATCTAGACACATTATG 57.101 34.615 0.00 0.00 31.25 1.90
5305 5662 8.311395 AGAGATTTGGACATCTAGACACATTA 57.689 34.615 0.00 0.00 33.36 1.90
5306 5663 7.192852 AGAGATTTGGACATCTAGACACATT 57.807 36.000 0.00 0.00 33.36 2.71
5307 5664 6.460814 CGAGAGATTTGGACATCTAGACACAT 60.461 42.308 0.00 0.00 33.36 3.21
5311 5670 4.202060 TGCGAGAGATTTGGACATCTAGAC 60.202 45.833 0.00 0.00 33.36 2.59
5313 5672 4.047822 GTGCGAGAGATTTGGACATCTAG 58.952 47.826 0.00 0.00 33.36 2.43
5331 5690 7.435192 TCCGAATCTAATAGCATATATTGTGCG 59.565 37.037 7.01 0.00 46.86 5.34
5346 5705 6.547141 TGCCTGAAATCATTTCCGAATCTAAT 59.453 34.615 7.68 0.00 38.90 1.73
5379 5738 3.697747 CCCGCCGTGTGGTTAGGA 61.698 66.667 3.33 0.00 37.67 2.94
5382 5741 4.992511 GCACCCGCCGTGTGGTTA 62.993 66.667 1.18 0.00 44.97 2.85
5412 5779 0.531311 GAGTTTCGTGGGGACGTTGT 60.531 55.000 0.00 0.00 0.00 3.32
5413 5780 0.531090 TGAGTTTCGTGGGGACGTTG 60.531 55.000 0.00 0.00 0.00 4.10
5414 5781 0.395312 ATGAGTTTCGTGGGGACGTT 59.605 50.000 0.00 0.00 0.00 3.99
5415 5782 1.259609 TATGAGTTTCGTGGGGACGT 58.740 50.000 0.00 0.00 0.00 4.34
5416 5783 2.373540 TTATGAGTTTCGTGGGGACG 57.626 50.000 0.00 0.00 0.00 4.79
5417 5784 5.878669 ACTAATTTATGAGTTTCGTGGGGAC 59.121 40.000 0.00 0.00 0.00 4.46
5418 5785 6.057321 ACTAATTTATGAGTTTCGTGGGGA 57.943 37.500 0.00 0.00 0.00 4.81
5419 5786 5.296035 GGACTAATTTATGAGTTTCGTGGGG 59.704 44.000 0.00 0.00 0.00 4.96
5420 5787 5.878116 TGGACTAATTTATGAGTTTCGTGGG 59.122 40.000 0.00 0.00 0.00 4.61
5421 5788 6.978343 TGGACTAATTTATGAGTTTCGTGG 57.022 37.500 0.00 0.00 0.00 4.94
5436 5803 8.408601 GCAAGTGATGACAAATTATGGACTAAT 58.591 33.333 0.00 0.00 0.00 1.73
5437 5804 7.148086 GGCAAGTGATGACAAATTATGGACTAA 60.148 37.037 0.00 0.00 36.87 2.24
5438 5805 6.318648 GGCAAGTGATGACAAATTATGGACTA 59.681 38.462 0.00 0.00 36.87 2.59
5439 5806 5.126061 GGCAAGTGATGACAAATTATGGACT 59.874 40.000 0.00 0.00 36.87 3.85
5440 5807 5.126061 AGGCAAGTGATGACAAATTATGGAC 59.874 40.000 0.00 0.00 40.75 4.02
5441 5808 5.263599 AGGCAAGTGATGACAAATTATGGA 58.736 37.500 0.00 0.00 40.75 3.41
5442 5809 5.587388 AGGCAAGTGATGACAAATTATGG 57.413 39.130 0.00 0.00 40.75 2.74
5443 5810 8.863049 GTTTTAGGCAAGTGATGACAAATTATG 58.137 33.333 0.00 0.00 40.75 1.90
5444 5811 8.806146 AGTTTTAGGCAAGTGATGACAAATTAT 58.194 29.630 0.00 0.00 40.75 1.28
5445 5812 8.081633 CAGTTTTAGGCAAGTGATGACAAATTA 58.918 33.333 0.00 0.00 40.75 1.40
5446 5813 6.925165 CAGTTTTAGGCAAGTGATGACAAATT 59.075 34.615 0.00 0.00 40.75 1.82
5447 5814 6.265196 TCAGTTTTAGGCAAGTGATGACAAAT 59.735 34.615 0.00 0.00 40.75 2.32
5448 5815 5.592282 TCAGTTTTAGGCAAGTGATGACAAA 59.408 36.000 0.00 0.00 40.75 2.83
5449 5816 5.129634 TCAGTTTTAGGCAAGTGATGACAA 58.870 37.500 0.00 0.00 40.75 3.18
5450 5817 4.713553 TCAGTTTTAGGCAAGTGATGACA 58.286 39.130 0.00 0.00 40.75 3.58
5451 5818 5.689383 TTCAGTTTTAGGCAAGTGATGAC 57.311 39.130 0.00 0.00 36.26 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.