Multiple sequence alignment - TraesCS4D01G056700

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G056700 chr4D 100.000 6364 0 0 1 6364 31816947 31823310 0.000000e+00 11753.0
1 TraesCS4D01G056700 chr4D 92.946 808 43 3 5559 6364 242938960 242938165 0.000000e+00 1164.0
2 TraesCS4D01G056700 chr4D 92.248 129 9 1 494 621 8137729 8137601 1.410000e-41 182.0
3 TraesCS4D01G056700 chr4D 91.473 129 11 0 493 621 187301413 187301541 1.820000e-40 178.0
4 TraesCS4D01G056700 chr4D 91.473 129 11 0 493 621 344231967 344231839 1.820000e-40 178.0
5 TraesCS4D01G056700 chr4D 90.909 132 10 2 491 621 464250118 464250248 6.560000e-40 176.0
6 TraesCS4D01G056700 chr4D 93.939 99 6 0 5053 5151 1652900 1652802 3.970000e-32 150.0
7 TraesCS4D01G056700 chr4D 93.878 98 6 0 5053 5150 323929572 323929669 1.430000e-31 148.0
8 TraesCS4D01G056700 chr4D 93.814 97 6 0 5054 5150 494042372 494042468 5.140000e-31 147.0
9 TraesCS4D01G056700 chr4D 92.929 99 7 0 5052 5150 12354696 12354794 1.850000e-30 145.0
10 TraesCS4D01G056700 chr4D 93.814 97 5 1 5054 5150 509117708 509117803 1.850000e-30 145.0
11 TraesCS4D01G056700 chr4D 89.815 108 11 0 5053 5160 375135019 375134912 8.600000e-29 139.0
12 TraesCS4D01G056700 chr4D 92.105 76 6 0 3828 3903 336225660 336225735 2.430000e-19 108.0
13 TraesCS4D01G056700 chr4D 92.857 70 4 1 3852 3920 68711388 68711457 4.060000e-17 100.0
14 TraesCS4D01G056700 chr4D 83.333 108 16 2 3826 3932 216251236 216251342 1.460000e-16 99.0
15 TraesCS4D01G056700 chr4D 97.727 44 0 1 893 935 344864663 344864706 2.460000e-09 75.0
16 TraesCS4D01G056700 chr4D 97.727 44 0 1 893 935 485141404 485141361 2.460000e-09 75.0
17 TraesCS4D01G056700 chr4D 100.000 39 0 0 898 936 36583507 36583545 8.850000e-09 73.1
18 TraesCS4D01G056700 chr4A 90.406 1428 97 22 2245 3654 570984320 570982915 0.000000e+00 1842.0
19 TraesCS4D01G056700 chr4A 92.748 1117 65 4 3918 5025 570982800 570981691 0.000000e+00 1600.0
20 TraesCS4D01G056700 chr4A 91.781 803 52 6 939 1727 570985578 570984776 0.000000e+00 1105.0
21 TraesCS4D01G056700 chr4A 95.309 469 21 1 1744 2211 570984787 570984319 0.000000e+00 743.0
22 TraesCS4D01G056700 chr4A 91.929 508 28 6 1 497 570986366 570985861 0.000000e+00 699.0
23 TraesCS4D01G056700 chr4A 93.805 226 5 4 5155 5379 570981634 570981417 1.320000e-86 331.0
24 TraesCS4D01G056700 chr4A 88.889 279 10 11 617 888 570985865 570985601 2.210000e-84 324.0
25 TraesCS4D01G056700 chr4A 93.651 189 5 6 5377 5559 570981389 570981202 6.280000e-70 276.0
26 TraesCS4D01G056700 chr4A 92.424 132 9 1 494 624 200095981 200095850 3.030000e-43 187.0
27 TraesCS4D01G056700 chr4A 91.852 135 8 3 488 620 175218817 175218684 1.090000e-42 185.0
28 TraesCS4D01G056700 chr4B 92.729 1114 71 10 3918 5023 45776212 45777323 0.000000e+00 1600.0
29 TraesCS4D01G056700 chr4B 90.155 1158 73 19 2689 3828 45775077 45776211 0.000000e+00 1469.0
30 TraesCS4D01G056700 chr4B 94.973 915 26 11 1744 2655 45774180 45775077 0.000000e+00 1417.0
31 TraesCS4D01G056700 chr4B 93.735 415 24 1 1313 1727 45773779 45774191 7.010000e-174 621.0
32 TraesCS4D01G056700 chr4B 92.172 396 25 3 926 1315 45773244 45773639 7.210000e-154 555.0
33 TraesCS4D01G056700 chr4B 89.943 348 27 5 1 343 45515593 45515937 5.860000e-120 442.0
34 TraesCS4D01G056700 chr4B 97.872 235 4 1 5146 5379 45777372 45777606 7.680000e-109 405.0
35 TraesCS4D01G056700 chr4B 94.681 188 5 2 5377 5559 45777634 45777821 2.900000e-73 287.0
36 TraesCS4D01G056700 chr4B 89.401 217 10 9 685 894 45773043 45773253 1.760000e-65 261.0
37 TraesCS4D01G056700 chr4B 80.992 363 25 21 1 343 45772452 45772790 1.370000e-61 248.0
38 TraesCS4D01G056700 chr4B 84.191 272 24 12 628 894 45516141 45516398 4.930000e-61 246.0
39 TraesCS4D01G056700 chr4B 93.130 131 8 1 495 624 59202086 59201956 2.340000e-44 191.0
40 TraesCS4D01G056700 chr4B 90.647 139 11 2 491 628 149160536 149160399 3.920000e-42 183.0
41 TraesCS4D01G056700 chr4B 91.045 134 10 2 491 623 518922663 518922531 5.070000e-41 180.0
42 TraesCS4D01G056700 chr4B 89.437 142 11 2 495 635 650576980 650577118 6.560000e-40 176.0
43 TraesCS4D01G056700 chr4B 82.468 154 14 5 344 493 45515985 45516129 8.660000e-24 122.0
44 TraesCS4D01G056700 chr4B 87.255 102 8 5 3828 3924 101298724 101298825 1.880000e-20 111.0
45 TraesCS4D01G056700 chr4B 86.458 96 12 1 3828 3922 21371230 21371135 3.140000e-18 104.0
46 TraesCS4D01G056700 chr4B 85.393 89 9 1 344 428 45772838 45772926 8.790000e-14 89.8
47 TraesCS4D01G056700 chr4B 100.000 40 0 0 896 935 253155422 253155383 2.460000e-09 75.0
48 TraesCS4D01G056700 chr4B 100.000 40 0 0 896 935 499912785 499912746 2.460000e-09 75.0
49 TraesCS4D01G056700 chr4B 97.727 44 0 1 893 935 525326068 525326111 2.460000e-09 75.0
50 TraesCS4D01G056700 chr4B 100.000 40 0 0 896 935 665241989 665241950 2.460000e-09 75.0
51 TraesCS4D01G056700 chr5D 92.831 809 42 5 5559 6364 292147894 292148689 0.000000e+00 1158.0
52 TraesCS4D01G056700 chr5D 92.079 808 53 3 5559 6364 15478269 15477471 0.000000e+00 1127.0
53 TraesCS4D01G056700 chr5D 91.708 808 54 5 5559 6364 442545404 442546200 0.000000e+00 1109.0
54 TraesCS4D01G056700 chr5D 90.511 137 11 2 487 622 179777674 179777539 5.070000e-41 180.0
55 TraesCS4D01G056700 chr5D 95.918 98 4 0 5053 5150 228446961 228447058 6.600000e-35 159.0
56 TraesCS4D01G056700 chr5D 93.333 105 7 0 5053 5157 205794743 205794639 8.540000e-34 156.0
57 TraesCS4D01G056700 chr5D 94.792 96 5 0 5054 5149 328911558 328911653 3.970000e-32 150.0
58 TraesCS4D01G056700 chr5D 93.204 103 6 1 5049 5150 558970537 558970435 3.970000e-32 150.0
59 TraesCS4D01G056700 chr5D 90.265 113 10 1 5051 5162 521371578 521371690 5.140000e-31 147.0
60 TraesCS4D01G056700 chr5D 92.473 93 6 1 3833 3924 288354387 288354295 1.440000e-26 132.0
61 TraesCS4D01G056700 chr5D 88.172 93 10 1 3828 3919 330393519 330393611 6.750000e-20 110.0
62 TraesCS4D01G056700 chr5D 95.833 48 1 1 893 939 421864730 421864683 6.840000e-10 76.8
63 TraesCS4D01G056700 chr5D 97.727 44 0 1 893 935 51064818 51064861 2.460000e-09 75.0
64 TraesCS4D01G056700 chr3D 92.831 809 39 5 5559 6364 329442588 329443380 0.000000e+00 1155.0
65 TraesCS4D01G056700 chr3D 92.969 128 8 1 500 626 163136903 163136776 1.090000e-42 185.0
66 TraesCS4D01G056700 chr3D 89.437 142 13 2 481 620 313287017 313286876 1.820000e-40 178.0
67 TraesCS4D01G056700 chr3D 93.458 107 5 2 5054 5158 582933496 582933390 2.380000e-34 158.0
68 TraesCS4D01G056700 chr3D 93.269 104 5 1 5047 5150 108210735 108210836 1.110000e-32 152.0
69 TraesCS4D01G056700 chr3D 88.298 94 10 1 3828 3920 575942931 575943024 1.880000e-20 111.0
70 TraesCS4D01G056700 chr5A 92.574 808 45 4 5559 6364 421825246 421824452 0.000000e+00 1146.0
71 TraesCS4D01G056700 chr6D 92.547 805 48 4 5562 6364 106030365 106029571 0.000000e+00 1144.0
72 TraesCS4D01G056700 chr6D 91.603 131 10 1 491 621 303203847 303203976 5.070000e-41 180.0
73 TraesCS4D01G056700 chr6D 90.909 132 10 2 491 620 469942716 469942585 6.560000e-40 176.0
74 TraesCS4D01G056700 chr6D 90.299 134 11 2 491 623 289890382 289890250 2.360000e-39 174.0
75 TraesCS4D01G056700 chr6D 90.840 131 10 2 491 620 424871635 424871764 2.360000e-39 174.0
76 TraesCS4D01G056700 chr6D 92.381 105 6 2 5053 5157 200398811 200398709 1.430000e-31 148.0
77 TraesCS4D01G056700 chr6D 92.157 102 8 0 5054 5155 465968865 465968966 1.850000e-30 145.0
78 TraesCS4D01G056700 chr6D 92.857 98 7 0 5053 5150 91559533 91559630 6.650000e-30 143.0
79 TraesCS4D01G056700 chr6D 92.079 101 8 0 5053 5153 382547318 382547418 6.650000e-30 143.0
80 TraesCS4D01G056700 chr6D 92.784 97 7 0 5054 5150 345760466 345760562 2.390000e-29 141.0
81 TraesCS4D01G056700 chr6D 91.919 99 8 0 5052 5150 251235031 251235129 8.600000e-29 139.0
82 TraesCS4D01G056700 chr6D 88.350 103 9 3 3820 3919 17996550 17996652 3.120000e-23 121.0
83 TraesCS4D01G056700 chr6D 87.379 103 10 3 3820 3919 17977584 17977686 1.450000e-21 115.0
84 TraesCS4D01G056700 chr6D 90.476 84 7 1 3828 3910 41948215 41948298 6.750000e-20 110.0
85 TraesCS4D01G056700 chr6D 87.778 90 9 2 3831 3919 453167633 453167545 3.140000e-18 104.0
86 TraesCS4D01G056700 chr6D 85.000 100 12 3 3826 3924 259273225 259273128 1.460000e-16 99.0
87 TraesCS4D01G056700 chr6D 82.569 109 11 5 3828 3929 429498294 429498187 8.790000e-14 89.8
88 TraesCS4D01G056700 chr6D 97.727 44 0 1 893 935 445279045 445279002 2.460000e-09 75.0
89 TraesCS4D01G056700 chr6D 84.000 75 12 0 3826 3900 228922096 228922170 8.850000e-09 73.1
90 TraesCS4D01G056700 chr6D 100.000 38 0 0 898 935 197193401 197193364 3.180000e-08 71.3
91 TraesCS4D01G056700 chr6D 95.556 45 1 1 893 936 394616591 394616635 3.180000e-08 71.3
92 TraesCS4D01G056700 chr6D 95.455 44 1 1 893 935 196356144 196356101 1.140000e-07 69.4
93 TraesCS4D01G056700 chr6D 95.455 44 1 1 893 935 445211088 445211045 1.140000e-07 69.4
94 TraesCS4D01G056700 chr1D 92.327 808 57 3 5559 6364 343859659 343858855 0.000000e+00 1144.0
95 TraesCS4D01G056700 chr1D 92.913 127 8 1 495 620 96916662 96916536 3.920000e-42 183.0
96 TraesCS4D01G056700 chr1D 92.248 129 10 0 493 621 279325205 279325077 3.920000e-42 183.0
97 TraesCS4D01G056700 chr1D 91.176 136 10 2 491 624 393087908 393087773 3.920000e-42 183.0
98 TraesCS4D01G056700 chr1D 92.248 129 9 1 494 621 86210049 86209921 1.410000e-41 182.0
99 TraesCS4D01G056700 chr1D 90.000 140 11 3 495 632 119975823 119975961 1.820000e-40 178.0
100 TraesCS4D01G056700 chr1D 89.437 142 12 3 484 623 52606691 52606551 6.560000e-40 176.0
101 TraesCS4D01G056700 chr1D 95.050 101 5 0 5053 5153 483907679 483907579 6.600000e-35 159.0
102 TraesCS4D01G056700 chr1D 93.069 101 7 0 5054 5154 420554542 420554642 1.430000e-31 148.0
103 TraesCS4D01G056700 chr1D 90.000 110 9 2 5045 5153 354518912 354519020 2.390000e-29 141.0
104 TraesCS4D01G056700 chr1D 90.526 95 6 3 3828 3920 320189554 320189647 8.660000e-24 122.0
105 TraesCS4D01G056700 chr1D 88.660 97 9 2 3829 3924 225458716 225458811 4.030000e-22 117.0
106 TraesCS4D01G056700 chr1D 88.298 94 10 1 3828 3920 333492257 333492164 1.880000e-20 111.0
107 TraesCS4D01G056700 chr1D 84.615 104 11 4 3828 3927 324624129 324624231 1.460000e-16 99.0
108 TraesCS4D01G056700 chr1D 97.727 44 0 1 893 935 49359012 49358969 2.460000e-09 75.0
109 TraesCS4D01G056700 chr1D 97.619 42 0 1 893 933 451855959 451855918 3.180000e-08 71.3
110 TraesCS4D01G056700 chr2D 92.203 808 55 3 5559 6364 4451910 4451109 0.000000e+00 1136.0
111 TraesCS4D01G056700 chr2D 91.460 808 61 3 5559 6364 515725298 515726099 0.000000e+00 1103.0
112 TraesCS4D01G056700 chr2D 90.909 88 7 1 3833 3919 440316106 440316019 4.030000e-22 117.0
113 TraesCS4D01G056700 chr2D 97.826 46 0 1 893 937 247111397 247111442 1.900000e-10 78.7
114 TraesCS4D01G056700 chr5B 90.738 799 65 4 5559 6355 662522398 662521607 0.000000e+00 1057.0
115 TraesCS4D01G056700 chr5B 90.071 141 12 2 485 624 318403666 318403805 1.410000e-41 182.0
116 TraesCS4D01G056700 chr5B 89.691 97 8 2 3828 3923 681777623 681777718 8.660000e-24 122.0
117 TraesCS4D01G056700 chr5B 97.778 45 0 1 893 936 16343569 16343525 6.840000e-10 76.8
118 TraesCS4D01G056700 chr7D 90.482 809 64 5 5559 6364 304180883 304181681 0.000000e+00 1055.0
119 TraesCS4D01G056700 chr7D 92.381 105 8 0 5053 5157 168580016 168579912 3.970000e-32 150.0
120 TraesCS4D01G056700 chr7D 88.333 120 12 2 5051 5169 518639118 518639236 6.650000e-30 143.0
121 TraesCS4D01G056700 chr7D 97.727 44 0 1 893 935 137608139 137608182 2.460000e-09 75.0
122 TraesCS4D01G056700 chr1B 89.506 810 76 5 5557 6364 98964732 98963930 0.000000e+00 1016.0
123 TraesCS4D01G056700 chr1B 92.424 132 9 1 492 622 613039586 613039455 3.030000e-43 187.0
124 TraesCS4D01G056700 chr1B 92.969 128 8 1 495 621 56890843 56890716 1.090000e-42 185.0
125 TraesCS4D01G056700 chr1B 90.511 137 13 0 492 628 26334476 26334612 1.410000e-41 182.0
126 TraesCS4D01G056700 chr1B 90.909 110 9 1 5043 5151 56752380 56752489 5.140000e-31 147.0
127 TraesCS4D01G056700 chr6B 93.846 130 7 1 493 621 101745915 101745786 1.810000e-45 195.0
128 TraesCS4D01G056700 chr6B 90.826 109 9 1 5049 5157 424084087 424084194 1.850000e-30 145.0
129 TraesCS4D01G056700 chr6B 90.826 109 9 1 5049 5157 424306785 424306892 1.850000e-30 145.0
130 TraesCS4D01G056700 chr6B 87.129 101 7 5 3822 3919 78402851 78402948 6.750000e-20 110.0
131 TraesCS4D01G056700 chr2B 93.182 132 7 2 491 620 551567864 551567995 6.510000e-45 193.0
132 TraesCS4D01G056700 chr2B 93.478 92 5 1 3830 3920 74002923 74002832 1.110000e-27 135.0
133 TraesCS4D01G056700 chr2B 92.391 92 6 1 3828 3918 164904159 164904250 5.180000e-26 130.0
134 TraesCS4D01G056700 chr2B 87.500 88 9 1 3828 3915 767423016 767423101 4.060000e-17 100.0
135 TraesCS4D01G056700 chr3A 89.542 153 13 3 470 621 16815509 16815359 2.340000e-44 191.0
136 TraesCS4D01G056700 chr3A 89.041 146 14 2 494 637 371626585 371626730 5.070000e-41 180.0
137 TraesCS4D01G056700 chr3A 94.898 98 5 0 5053 5150 109150863 109150960 3.070000e-33 154.0
138 TraesCS4D01G056700 chr3A 89.831 118 7 5 5041 5157 647618172 647618285 5.140000e-31 147.0
139 TraesCS4D01G056700 chr3A 92.982 57 3 1 898 953 10926075 10926131 1.470000e-11 82.4
140 TraesCS4D01G056700 chr6A 93.701 127 7 1 495 620 457399481 457399355 8.420000e-44 189.0
141 TraesCS4D01G056700 chr6A 91.852 135 9 2 488 620 135929149 135929015 3.030000e-43 187.0
142 TraesCS4D01G056700 chr6A 86.928 153 18 2 487 637 94235349 94235197 3.050000e-38 171.0
143 TraesCS4D01G056700 chr6A 89.167 120 5 8 5041 5157 499211803 499211689 6.650000e-30 143.0
144 TraesCS4D01G056700 chrUn 92.366 131 9 1 492 621 108296321 108296191 1.090000e-42 185.0
145 TraesCS4D01G056700 chrUn 92.188 128 9 1 494 620 339419852 339419725 5.070000e-41 180.0
146 TraesCS4D01G056700 chrUn 92.188 128 9 1 494 620 339422422 339422295 5.070000e-41 180.0
147 TraesCS4D01G056700 chrUn 92.188 128 9 1 494 620 389022559 389022432 5.070000e-41 180.0
148 TraesCS4D01G056700 chrUn 91.473 129 10 1 493 620 16890454 16890326 6.560000e-40 176.0
149 TraesCS4D01G056700 chrUn 91.473 129 10 1 495 622 322720536 322720408 6.560000e-40 176.0
150 TraesCS4D01G056700 chrUn 90.299 134 11 2 491 623 1522247 1522115 2.360000e-39 174.0
151 TraesCS4D01G056700 chrUn 91.406 128 10 1 494 620 17025386 17025259 2.360000e-39 174.0
152 TraesCS4D01G056700 chrUn 91.406 128 10 1 494 620 17027619 17027492 2.360000e-39 174.0
153 TraesCS4D01G056700 chrUn 89.130 138 14 1 492 628 263456494 263456357 3.050000e-38 171.0
154 TraesCS4D01G056700 chrUn 91.509 106 9 0 5054 5159 341053844 341053739 5.140000e-31 147.0
155 TraesCS4D01G056700 chrUn 91.919 99 8 0 5052 5150 2713995 2713897 8.600000e-29 139.0
156 TraesCS4D01G056700 chrUn 91.919 99 8 0 5052 5150 2717597 2717499 8.600000e-29 139.0
157 TraesCS4D01G056700 chrUn 91.919 99 8 0 5052 5150 2780475 2780377 8.600000e-29 139.0
158 TraesCS4D01G056700 chrUn 90.196 102 9 1 5051 5151 479972389 479972490 1.440000e-26 132.0
159 TraesCS4D01G056700 chrUn 88.679 106 12 0 5052 5157 11367715 11367820 5.180000e-26 130.0
160 TraesCS4D01G056700 chrUn 89.320 103 11 0 5048 5150 27746559 27746661 5.180000e-26 130.0
161 TraesCS4D01G056700 chrUn 90.722 97 9 0 5054 5150 79951901 79951805 5.180000e-26 130.0
162 TraesCS4D01G056700 chrUn 90.722 97 9 0 5054 5150 102519388 102519292 5.180000e-26 130.0
163 TraesCS4D01G056700 chrUn 88.679 106 12 0 5052 5157 345663621 345663516 5.180000e-26 130.0
164 TraesCS4D01G056700 chrUn 88.679 106 12 0 5052 5157 385825143 385825038 5.180000e-26 130.0
165 TraesCS4D01G056700 chrUn 87.097 93 9 1 3828 3920 356424554 356424643 1.130000e-17 102.0
166 TraesCS4D01G056700 chrUn 95.652 46 2 0 3875 3920 38926449 38926494 2.460000e-09 75.0
167 TraesCS4D01G056700 chrUn 97.727 44 0 1 893 935 91673764 91673807 2.460000e-09 75.0
168 TraesCS4D01G056700 chr2A 90.647 139 13 0 494 632 753531426 753531288 1.090000e-42 185.0
169 TraesCS4D01G056700 chr7B 90.647 139 11 2 484 620 254383061 254382923 3.920000e-42 183.0
170 TraesCS4D01G056700 chr7B 97.778 45 0 1 893 936 414577926 414577970 6.840000e-10 76.8
171 TraesCS4D01G056700 chr7A 90.647 139 11 2 495 632 603025340 603025203 3.920000e-42 183.0
172 TraesCS4D01G056700 chr1A 92.248 129 10 0 493 621 496854476 496854604 3.920000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G056700 chr4D 31816947 31823310 6363 False 11753.00 11753 100.00000 1 6364 1 chr4D.!!$F2 6363
1 TraesCS4D01G056700 chr4D 242938165 242938960 795 True 1164.00 1164 92.94600 5559 6364 1 chr4D.!!$R3 805
2 TraesCS4D01G056700 chr4A 570981202 570986366 5164 True 865.00 1842 92.31475 1 5559 8 chr4A.!!$R3 5558
3 TraesCS4D01G056700 chr4B 45772452 45777821 5369 False 695.28 1600 91.21030 1 5559 10 chr4B.!!$F5 5558
4 TraesCS4D01G056700 chr4B 45515593 45516398 805 False 270.00 442 85.53400 1 894 3 chr4B.!!$F4 893
5 TraesCS4D01G056700 chr5D 292147894 292148689 795 False 1158.00 1158 92.83100 5559 6364 1 chr5D.!!$F3 805
6 TraesCS4D01G056700 chr5D 15477471 15478269 798 True 1127.00 1127 92.07900 5559 6364 1 chr5D.!!$R1 805
7 TraesCS4D01G056700 chr5D 442545404 442546200 796 False 1109.00 1109 91.70800 5559 6364 1 chr5D.!!$F6 805
8 TraesCS4D01G056700 chr3D 329442588 329443380 792 False 1155.00 1155 92.83100 5559 6364 1 chr3D.!!$F2 805
9 TraesCS4D01G056700 chr5A 421824452 421825246 794 True 1146.00 1146 92.57400 5559 6364 1 chr5A.!!$R1 805
10 TraesCS4D01G056700 chr6D 106029571 106030365 794 True 1144.00 1144 92.54700 5562 6364 1 chr6D.!!$R1 802
11 TraesCS4D01G056700 chr1D 343858855 343859659 804 True 1144.00 1144 92.32700 5559 6364 1 chr1D.!!$R7 805
12 TraesCS4D01G056700 chr2D 4451109 4451910 801 True 1136.00 1136 92.20300 5559 6364 1 chr2D.!!$R1 805
13 TraesCS4D01G056700 chr2D 515725298 515726099 801 False 1103.00 1103 91.46000 5559 6364 1 chr2D.!!$F2 805
14 TraesCS4D01G056700 chr5B 662521607 662522398 791 True 1057.00 1057 90.73800 5559 6355 1 chr5B.!!$R2 796
15 TraesCS4D01G056700 chr7D 304180883 304181681 798 False 1055.00 1055 90.48200 5559 6364 1 chr7D.!!$F2 805
16 TraesCS4D01G056700 chr1B 98963930 98964732 802 True 1016.00 1016 89.50600 5557 6364 1 chr1B.!!$R2 807

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
305 333 0.034896 TGAACTTGGAGCGTCCTTCC 59.965 55.000 5.77 0.00 37.46 3.46 F
307 335 0.035458 AACTTGGAGCGTCCTTCCAG 59.965 55.000 5.77 0.00 45.00 3.86 F
1046 1165 0.040646 TCCTGCCCTCCGTTTCTCTA 59.959 55.000 0.00 0.00 0.00 2.43 F
2247 2523 0.258774 GGCATGGTGGTCCCTGTAAT 59.741 55.000 0.00 0.00 32.98 1.89 F
2935 3214 0.322648 TGTCACATGACTGGCCTCTG 59.677 55.000 12.98 0.00 44.99 3.35 F
3540 3827 1.065401 CTGCAGCGAAACAGTTTCCAA 59.935 47.619 18.58 1.64 36.30 3.53 F
3841 4137 0.469331 AACACACTCCCTCCGTCTCA 60.469 55.000 0.00 0.00 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1362 1629 0.745128 ACACCAACGTCGAGCCAAAA 60.745 50.000 0.00 0.00 0.00 2.44 R
2162 2437 1.200519 CATCCTTGTCCCGGTTAGGA 58.799 55.000 11.91 11.91 45.00 2.94 R
2809 3088 1.133482 TCGTATGGAGGCCTCTCATGA 60.133 52.381 31.28 23.75 41.69 3.07 R
3801 4097 0.383231 GGGAAGCATGAAGCATTCCG 59.617 55.000 0.00 0.00 46.93 4.30 R
3823 4119 0.469331 TTGAGACGGAGGGAGTGTGT 60.469 55.000 0.00 0.00 0.00 3.72 R
4467 4769 1.399440 CACTGCCGGTCATCTTGAATG 59.601 52.381 1.90 0.00 0.00 2.67 R
5805 6209 0.035881 CAGACCTCCAGAAGCTGCAA 59.964 55.000 1.02 0.00 0.00 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 99 2.027745 CCTGTAGCTTCTGCCTCTTTGA 60.028 50.000 0.00 0.00 40.80 2.69
96 101 2.634940 TGTAGCTTCTGCCTCTTTGACT 59.365 45.455 0.00 0.00 40.80 3.41
272 300 1.580385 CGATGTCGTCGTGTCCTCG 60.580 63.158 6.28 0.00 45.19 4.63
305 333 0.034896 TGAACTTGGAGCGTCCTTCC 59.965 55.000 5.77 0.00 37.46 3.46
307 335 0.035458 AACTTGGAGCGTCCTTCCAG 59.965 55.000 5.77 0.00 45.00 3.86
497 581 5.927954 TCCGTAACACATTTGAAAGTACC 57.072 39.130 0.00 0.00 0.00 3.34
498 582 4.756135 TCCGTAACACATTTGAAAGTACCC 59.244 41.667 0.00 0.00 0.00 3.69
499 583 4.083164 CCGTAACACATTTGAAAGTACCCC 60.083 45.833 0.00 0.00 0.00 4.95
500 584 4.083164 CGTAACACATTTGAAAGTACCCCC 60.083 45.833 0.00 0.00 0.00 5.40
501 585 3.895704 ACACATTTGAAAGTACCCCCT 57.104 42.857 0.00 0.00 0.00 4.79
502 586 3.763057 ACACATTTGAAAGTACCCCCTC 58.237 45.455 0.00 0.00 0.00 4.30
503 587 3.089284 CACATTTGAAAGTACCCCCTCC 58.911 50.000 0.00 0.00 0.00 4.30
504 588 2.290705 ACATTTGAAAGTACCCCCTCCG 60.291 50.000 0.00 0.00 0.00 4.63
505 589 1.437397 TTTGAAAGTACCCCCTCCGT 58.563 50.000 0.00 0.00 0.00 4.69
506 590 1.437397 TTGAAAGTACCCCCTCCGTT 58.563 50.000 0.00 0.00 0.00 4.44
507 591 1.437397 TGAAAGTACCCCCTCCGTTT 58.563 50.000 0.00 0.00 0.00 3.60
508 592 2.618794 TGAAAGTACCCCCTCCGTTTA 58.381 47.619 0.00 0.00 0.00 2.01
509 593 2.568509 TGAAAGTACCCCCTCCGTTTAG 59.431 50.000 0.00 0.00 0.00 1.85
510 594 2.629017 AAGTACCCCCTCCGTTTAGA 57.371 50.000 0.00 0.00 0.00 2.10
511 595 2.629017 AGTACCCCCTCCGTTTAGAA 57.371 50.000 0.00 0.00 0.00 2.10
512 596 2.906568 AGTACCCCCTCCGTTTAGAAA 58.093 47.619 0.00 0.00 0.00 2.52
513 597 3.457836 AGTACCCCCTCCGTTTAGAAAT 58.542 45.455 0.00 0.00 0.00 2.17
514 598 4.623863 AGTACCCCCTCCGTTTAGAAATA 58.376 43.478 0.00 0.00 0.00 1.40
515 599 3.920231 ACCCCCTCCGTTTAGAAATAC 57.080 47.619 0.00 0.00 0.00 1.89
516 600 3.457836 ACCCCCTCCGTTTAGAAATACT 58.542 45.455 0.00 0.00 0.00 2.12
517 601 3.848377 ACCCCCTCCGTTTAGAAATACTT 59.152 43.478 0.00 0.00 0.00 2.24
518 602 4.196971 CCCCCTCCGTTTAGAAATACTTG 58.803 47.826 0.00 0.00 0.00 3.16
519 603 4.324022 CCCCCTCCGTTTAGAAATACTTGT 60.324 45.833 0.00 0.00 0.00 3.16
520 604 4.874396 CCCCTCCGTTTAGAAATACTTGTC 59.126 45.833 0.00 0.00 0.00 3.18
521 605 5.484715 CCCTCCGTTTAGAAATACTTGTCA 58.515 41.667 0.00 0.00 0.00 3.58
522 606 6.113411 CCCTCCGTTTAGAAATACTTGTCAT 58.887 40.000 0.00 0.00 0.00 3.06
523 607 6.258068 CCCTCCGTTTAGAAATACTTGTCATC 59.742 42.308 0.00 0.00 0.00 2.92
524 608 6.816640 CCTCCGTTTAGAAATACTTGTCATCA 59.183 38.462 0.00 0.00 0.00 3.07
525 609 7.333423 CCTCCGTTTAGAAATACTTGTCATCAA 59.667 37.037 0.00 0.00 0.00 2.57
526 610 8.610248 TCCGTTTAGAAATACTTGTCATCAAA 57.390 30.769 0.00 0.00 32.87 2.69
527 611 9.058174 TCCGTTTAGAAATACTTGTCATCAAAA 57.942 29.630 0.00 0.00 32.87 2.44
528 612 9.840427 CCGTTTAGAAATACTTGTCATCAAAAT 57.160 29.630 0.00 0.00 32.87 1.82
554 638 8.503428 AGATAAAAGGAGATGTATCCAGATGT 57.497 34.615 0.00 0.00 42.26 3.06
555 639 9.607333 AGATAAAAGGAGATGTATCCAGATGTA 57.393 33.333 0.00 0.00 42.26 2.29
559 643 9.927081 AAAAGGAGATGTATCCAGATGTATTTT 57.073 29.630 0.00 0.00 42.26 1.82
562 646 9.386122 AGGAGATGTATCCAGATGTATTTTAGT 57.614 33.333 0.00 0.00 42.26 2.24
602 686 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
603 687 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
604 688 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
605 689 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
606 690 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
607 691 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
608 692 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
609 693 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
610 694 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
611 695 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
612 696 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
613 697 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
614 698 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
615 699 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
616 700 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
617 701 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
618 702 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
619 703 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
620 704 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
621 705 0.251297 TTTCGGACGGAGGGAGTACA 60.251 55.000 0.00 0.00 0.00 2.90
622 706 0.251297 TTCGGACGGAGGGAGTACAA 60.251 55.000 0.00 0.00 0.00 2.41
623 707 0.679002 TCGGACGGAGGGAGTACAAG 60.679 60.000 0.00 0.00 0.00 3.16
624 708 0.679002 CGGACGGAGGGAGTACAAGA 60.679 60.000 0.00 0.00 0.00 3.02
625 709 1.553706 GGACGGAGGGAGTACAAGAA 58.446 55.000 0.00 0.00 0.00 2.52
626 710 1.897802 GGACGGAGGGAGTACAAGAAA 59.102 52.381 0.00 0.00 0.00 2.52
664 760 5.392286 GTTACGATCTTATCCCTCGACATC 58.608 45.833 0.00 0.00 36.32 3.06
669 765 5.986135 CGATCTTATCCCTCGACATCTTTTT 59.014 40.000 0.00 0.00 34.41 1.94
773 869 2.202932 CTGAATCCGGCGGACAGG 60.203 66.667 33.71 17.45 32.98 4.00
774 870 4.467084 TGAATCCGGCGGACAGGC 62.467 66.667 33.71 20.17 42.76 4.85
782 878 4.593864 GCGGACAGGCGGAGGATC 62.594 72.222 0.00 0.00 0.00 3.36
810 906 1.222113 GCTCTAACTGGGCCTCCAC 59.778 63.158 4.53 0.00 38.32 4.02
860 962 4.738998 CTGCCCCAACCGCCATGA 62.739 66.667 0.00 0.00 0.00 3.07
894 1012 2.214216 CGACACCCCCAACCTCTGA 61.214 63.158 0.00 0.00 0.00 3.27
895 1013 1.375326 GACACCCCCAACCTCTGAC 59.625 63.158 0.00 0.00 0.00 3.51
896 1014 2.125766 GACACCCCCAACCTCTGACC 62.126 65.000 0.00 0.00 0.00 4.02
897 1015 2.153401 CACCCCCAACCTCTGACCA 61.153 63.158 0.00 0.00 0.00 4.02
898 1016 1.386772 ACCCCCAACCTCTGACCAA 60.387 57.895 0.00 0.00 0.00 3.67
899 1017 0.776080 ACCCCCAACCTCTGACCAAT 60.776 55.000 0.00 0.00 0.00 3.16
900 1018 0.323725 CCCCCAACCTCTGACCAATG 60.324 60.000 0.00 0.00 0.00 2.82
901 1019 0.323725 CCCCAACCTCTGACCAATGG 60.324 60.000 0.00 0.00 0.00 3.16
902 1020 0.698238 CCCAACCTCTGACCAATGGA 59.302 55.000 6.16 0.00 0.00 3.41
903 1021 1.340405 CCCAACCTCTGACCAATGGAG 60.340 57.143 6.16 0.00 0.00 3.86
904 1022 1.630369 CCAACCTCTGACCAATGGAGA 59.370 52.381 6.16 0.00 0.00 3.71
905 1023 2.040278 CCAACCTCTGACCAATGGAGAA 59.960 50.000 6.16 0.00 0.00 2.87
906 1024 3.341823 CAACCTCTGACCAATGGAGAAG 58.658 50.000 6.16 0.00 0.00 2.85
907 1025 2.625639 ACCTCTGACCAATGGAGAAGT 58.374 47.619 6.16 0.00 0.00 3.01
908 1026 3.791320 ACCTCTGACCAATGGAGAAGTA 58.209 45.455 6.16 0.00 0.00 2.24
909 1027 4.168101 ACCTCTGACCAATGGAGAAGTAA 58.832 43.478 6.16 0.00 0.00 2.24
910 1028 4.597507 ACCTCTGACCAATGGAGAAGTAAA 59.402 41.667 6.16 0.00 0.00 2.01
911 1029 5.181748 CCTCTGACCAATGGAGAAGTAAAG 58.818 45.833 6.16 0.00 0.00 1.85
912 1030 5.280215 CCTCTGACCAATGGAGAAGTAAAGT 60.280 44.000 6.16 0.00 0.00 2.66
913 1031 5.551233 TCTGACCAATGGAGAAGTAAAGTG 58.449 41.667 6.16 0.00 0.00 3.16
914 1032 4.651778 TGACCAATGGAGAAGTAAAGTGG 58.348 43.478 6.16 0.00 0.00 4.00
915 1033 4.010349 GACCAATGGAGAAGTAAAGTGGG 58.990 47.826 6.16 0.00 0.00 4.61
916 1034 3.245264 ACCAATGGAGAAGTAAAGTGGGG 60.245 47.826 6.16 0.00 0.00 4.96
917 1035 2.755103 CAATGGAGAAGTAAAGTGGGGC 59.245 50.000 0.00 0.00 0.00 5.80
918 1036 1.440618 TGGAGAAGTAAAGTGGGGCA 58.559 50.000 0.00 0.00 0.00 5.36
919 1037 1.777878 TGGAGAAGTAAAGTGGGGCAA 59.222 47.619 0.00 0.00 0.00 4.52
920 1038 2.175931 TGGAGAAGTAAAGTGGGGCAAA 59.824 45.455 0.00 0.00 0.00 3.68
921 1039 3.227614 GGAGAAGTAAAGTGGGGCAAAA 58.772 45.455 0.00 0.00 0.00 2.44
922 1040 3.255888 GGAGAAGTAAAGTGGGGCAAAAG 59.744 47.826 0.00 0.00 0.00 2.27
923 1041 4.142038 GAGAAGTAAAGTGGGGCAAAAGA 58.858 43.478 0.00 0.00 0.00 2.52
924 1042 4.740902 AGAAGTAAAGTGGGGCAAAAGAT 58.259 39.130 0.00 0.00 0.00 2.40
925 1043 4.767409 AGAAGTAAAGTGGGGCAAAAGATC 59.233 41.667 0.00 0.00 0.00 2.75
926 1044 3.431415 AGTAAAGTGGGGCAAAAGATCC 58.569 45.455 0.00 0.00 0.00 3.36
927 1045 2.397044 AAAGTGGGGCAAAAGATCCA 57.603 45.000 0.00 0.00 0.00 3.41
928 1046 2.397044 AAGTGGGGCAAAAGATCCAA 57.603 45.000 0.00 0.00 0.00 3.53
929 1047 2.629017 AGTGGGGCAAAAGATCCAAT 57.371 45.000 0.00 0.00 0.00 3.16
930 1048 2.906568 AGTGGGGCAAAAGATCCAATT 58.093 42.857 0.00 0.00 0.00 2.32
931 1049 3.250617 AGTGGGGCAAAAGATCCAATTT 58.749 40.909 0.00 0.00 0.00 1.82
932 1050 3.261643 AGTGGGGCAAAAGATCCAATTTC 59.738 43.478 0.00 0.00 0.00 2.17
933 1051 3.261643 GTGGGGCAAAAGATCCAATTTCT 59.738 43.478 0.00 0.00 0.00 2.52
937 1055 3.429410 GGCAAAAGATCCAATTTCTCCCG 60.429 47.826 0.00 0.00 0.00 5.14
1018 1137 2.286872 CCATGAAGGTGAGTGATCAGC 58.713 52.381 0.00 0.00 38.30 4.26
1023 1142 0.534412 AGGTGAGTGATCAGCCGAAG 59.466 55.000 0.00 0.00 38.75 3.79
1046 1165 0.040646 TCCTGCCCTCCGTTTCTCTA 59.959 55.000 0.00 0.00 0.00 2.43
1047 1166 1.123928 CCTGCCCTCCGTTTCTCTAT 58.876 55.000 0.00 0.00 0.00 1.98
1068 1187 3.264897 CAGCCGTATGTGCTCCGC 61.265 66.667 0.00 0.00 36.81 5.54
1087 1206 1.943968 GCGCACTGGTCAATAGGTTCA 60.944 52.381 0.30 0.00 0.00 3.18
1088 1207 1.732259 CGCACTGGTCAATAGGTTCAC 59.268 52.381 0.00 0.00 0.00 3.18
1184 1303 2.124570 GAGGGATGCATGCACGGT 60.125 61.111 25.37 7.40 0.00 4.83
1280 1399 4.681978 GGCGACTTCCAGGTGCGT 62.682 66.667 0.00 0.00 0.00 5.24
1315 1580 2.743928 CTGCCCACGCTCCTTCAC 60.744 66.667 0.00 0.00 35.36 3.18
1329 1594 1.902508 CCTTCACTGGAGCTGGAGTTA 59.097 52.381 0.00 0.00 0.00 2.24
1335 1602 5.003804 TCACTGGAGCTGGAGTTATTTTTC 58.996 41.667 0.00 0.00 0.00 2.29
1362 1629 5.296780 CCTTGAATACATTGCGAGGTTACAT 59.703 40.000 0.00 0.00 0.00 2.29
1375 1642 1.802365 GGTTACATTTTGGCTCGACGT 59.198 47.619 0.00 0.00 0.00 4.34
1609 1884 3.376078 GTCTGGTCGTGCCGGGTA 61.376 66.667 2.18 0.00 43.94 3.69
1614 1889 1.739196 GGTCGTGCCGGGTACTTTC 60.739 63.158 13.48 3.65 0.00 2.62
1626 1901 5.045872 CCGGGTACTTTCTTACGGAAATAG 58.954 45.833 0.00 0.00 43.69 1.73
1665 1940 5.512232 CCTTAAGAAGGTCATATCTGGCTCC 60.512 48.000 3.36 0.00 43.95 4.70
1674 1949 4.021894 GTCATATCTGGCTCCGTTCTATGT 60.022 45.833 0.00 0.00 0.00 2.29
1693 1968 7.791029 TCTATGTAGCATGGACAAGTTGATTA 58.209 34.615 10.54 0.00 0.00 1.75
1724 1999 9.321562 CATGGTTATAGTTTATTGTTCGGTAGT 57.678 33.333 0.00 0.00 0.00 2.73
1749 2024 4.642445 AAAAATTTGAGAACCGTTCGGT 57.358 36.364 11.27 11.27 40.78 4.69
1750 2025 5.754543 AAAAATTTGAGAACCGTTCGGTA 57.245 34.783 17.21 1.07 37.57 4.02
1751 2026 5.952526 AAAATTTGAGAACCGTTCGGTAT 57.047 34.783 17.21 9.28 37.57 2.73
1801 2076 5.069318 TCACATTCTGACATTGCACCTTTA 58.931 37.500 0.00 0.00 0.00 1.85
2037 2312 5.888161 CAGTGGTTTAATTTAGCTCTGGGAT 59.112 40.000 0.00 0.00 33.41 3.85
2232 2508 4.107072 AGCCACATATATACTCCTGGCAT 58.893 43.478 17.68 6.39 45.59 4.40
2233 2509 4.080695 AGCCACATATATACTCCTGGCATG 60.081 45.833 17.68 0.00 45.59 4.06
2241 2517 3.338250 TCCTGGCATGGTGGTCCC 61.338 66.667 0.00 0.00 0.00 4.46
2247 2523 0.258774 GGCATGGTGGTCCCTGTAAT 59.741 55.000 0.00 0.00 32.98 1.89
2319 2595 5.105063 GGCATTGTTTTGAATCTAAGGCTC 58.895 41.667 0.00 0.00 0.00 4.70
2381 2658 2.072298 AGACGATCAACAGCTTTCAGC 58.928 47.619 0.00 0.00 42.84 4.26
2392 2669 2.032550 CAGCTTTCAGCCATTGGATACG 59.967 50.000 6.95 0.00 43.77 3.06
2395 2672 3.625764 GCTTTCAGCCATTGGATACGTTA 59.374 43.478 6.95 0.00 35.03 3.18
2406 2683 8.349983 GCCATTGGATACGTTAATTTACTCAAT 58.650 33.333 6.95 0.00 42.51 2.57
2449 2726 6.403866 AAATGATGAGGTGTTGTTTTGCTA 57.596 33.333 0.00 0.00 0.00 3.49
2490 2769 5.354234 CCTGCTTTTCTAATCGTGGTGTAAT 59.646 40.000 0.00 0.00 0.00 1.89
2661 2940 7.435068 TCTTGCTTGGATTACTTTGTAGTTC 57.565 36.000 0.00 0.00 35.78 3.01
2663 2942 4.693566 TGCTTGGATTACTTTGTAGTTCGG 59.306 41.667 0.00 0.00 35.78 4.30
2666 2945 5.988310 TGGATTACTTTGTAGTTCGGAGA 57.012 39.130 0.00 0.00 35.78 3.71
2670 2949 7.333423 TGGATTACTTTGTAGTTCGGAGATTTG 59.667 37.037 0.00 0.00 35.04 2.32
2672 2951 9.362539 GATTACTTTGTAGTTCGGAGATTTGTA 57.637 33.333 0.00 0.00 35.04 2.41
2675 2954 8.617290 ACTTTGTAGTTCGGAGATTTGTATTT 57.383 30.769 0.00 0.00 35.04 1.40
2676 2955 9.063615 ACTTTGTAGTTCGGAGATTTGTATTTT 57.936 29.630 0.00 0.00 35.04 1.82
2677 2956 9.893305 CTTTGTAGTTCGGAGATTTGTATTTTT 57.107 29.630 0.00 0.00 35.04 1.94
2712 2991 7.030234 TCTAGAAGTTACTGTCTAGGGAGTT 57.970 40.000 20.51 0.00 42.41 3.01
2731 3010 4.593956 AGTTGAAGCCTATTGAAGAAGGG 58.406 43.478 0.00 0.00 33.17 3.95
2760 3039 7.838771 AAACTAGGACGGTAAATGTCATTAC 57.161 36.000 0.00 0.00 38.10 1.89
2809 3088 3.301794 TTGCCAATCTATGCAGGACAT 57.698 42.857 0.00 0.00 43.18 3.06
2935 3214 0.322648 TGTCACATGACTGGCCTCTG 59.677 55.000 12.98 0.00 44.99 3.35
2957 3236 5.765510 TGGGCATTACTGAATATGGAAACT 58.234 37.500 0.00 0.00 0.00 2.66
2977 3256 2.889200 GGAGAGGCTCCTTCGAGAA 58.111 57.895 11.71 0.00 46.41 2.87
2991 3270 4.515432 CTTCGAGAAAAACCGTTCTTCAC 58.485 43.478 0.34 0.00 37.98 3.18
3014 3293 5.221843 ACAGAAGAGGTAATACCAAGTTGCA 60.222 40.000 12.54 0.00 41.95 4.08
3017 3296 5.959618 AGAGGTAATACCAAGTTGCAAAC 57.040 39.130 12.54 0.00 44.44 2.93
3042 3321 8.739972 ACTGACATAAGGGATTATTTTGTGTTC 58.260 33.333 0.00 0.00 0.00 3.18
3070 3349 2.487372 TGTTATGTCCGCGTAGTACACA 59.513 45.455 4.92 0.00 0.00 3.72
3071 3350 3.103738 GTTATGTCCGCGTAGTACACAG 58.896 50.000 4.92 0.00 0.00 3.66
3102 3381 2.379005 GCCAAGTTAGGGGGAAGATTG 58.621 52.381 0.00 0.00 0.00 2.67
3104 3383 2.379005 CAAGTTAGGGGGAAGATTGCC 58.621 52.381 0.00 0.00 38.05 4.52
3161 3440 7.767250 ATTAAGATCTATTTTAGCTTGGGCC 57.233 36.000 0.00 0.00 39.73 5.80
3209 3488 9.314321 TCTACGATTTGTTCTTAGATTGGATTC 57.686 33.333 0.00 0.00 32.03 2.52
3226 3505 7.857404 TTGGATTCTTAGTCCTCTATAAGGG 57.143 40.000 0.00 0.00 46.23 3.95
3253 3534 2.948315 CTCTGAGGAATAAAGCCAAGCC 59.052 50.000 0.00 0.00 0.00 4.35
3320 3601 4.811752 GCCTTCCCTCCTATCTACCTAGAC 60.812 54.167 0.00 0.00 34.72 2.59
3322 3603 4.246125 TCCCTCCTATCTACCTAGACCT 57.754 50.000 0.00 0.00 34.72 3.85
3323 3604 4.589566 TCCCTCCTATCTACCTAGACCTT 58.410 47.826 0.00 0.00 34.72 3.50
3324 3605 5.746013 TCCCTCCTATCTACCTAGACCTTA 58.254 45.833 0.00 0.00 34.72 2.69
3325 3606 6.349163 TCCCTCCTATCTACCTAGACCTTAT 58.651 44.000 0.00 0.00 34.72 1.73
3326 3607 7.503077 TCCCTCCTATCTACCTAGACCTTATA 58.497 42.308 0.00 0.00 34.72 0.98
3373 3654 5.967088 TGGCAACACTCTTCTCTCTATAAC 58.033 41.667 0.00 0.00 46.17 1.89
3374 3655 5.480422 TGGCAACACTCTTCTCTCTATAACA 59.520 40.000 0.00 0.00 46.17 2.41
3375 3656 6.155221 TGGCAACACTCTTCTCTCTATAACAT 59.845 38.462 0.00 0.00 46.17 2.71
3388 3669 6.806751 TCTCTATAACATATATGCCTTCCGC 58.193 40.000 12.79 0.00 38.31 5.54
3397 3678 4.625800 GCCTTCCGCAACTCATCT 57.374 55.556 0.00 0.00 37.47 2.90
3407 3694 2.416547 CGCAACTCATCTAACCTTGTGG 59.583 50.000 0.00 0.00 39.83 4.17
3412 3699 6.374333 GCAACTCATCTAACCTTGTGGAAATA 59.626 38.462 0.00 0.00 37.04 1.40
3430 3717 5.280317 GGAAATACCTCAAGGGAGTGTGTTA 60.280 44.000 0.29 0.00 39.64 2.41
3442 3729 5.240844 AGGGAGTGTGTTAACTTTATTGTGC 59.759 40.000 7.22 0.00 0.00 4.57
3443 3730 5.458015 GGAGTGTGTTAACTTTATTGTGCC 58.542 41.667 7.22 0.00 0.00 5.01
3447 3734 5.685511 GTGTGTTAACTTTATTGTGCCACAG 59.314 40.000 7.22 0.00 31.65 3.66
3467 3754 6.092092 CACAGTGTCACATTTTGAGTCAAAA 58.908 36.000 28.30 28.30 45.41 2.44
3468 3755 6.585702 CACAGTGTCACATTTTGAGTCAAAAA 59.414 34.615 29.44 14.22 44.68 1.94
3540 3827 1.065401 CTGCAGCGAAACAGTTTCCAA 59.935 47.619 18.58 1.64 36.30 3.53
3547 3834 3.304391 GCGAAACAGTTTCCAATGCTGTA 60.304 43.478 18.58 0.00 41.94 2.74
3574 3861 4.820716 GCATCTGTGATCAGCTAAGGATTT 59.179 41.667 0.00 0.00 41.10 2.17
3624 3917 8.092687 TCTTGTCAAGTTACACTAGATAAACCC 58.907 37.037 12.30 0.00 0.00 4.11
3626 3919 7.970102 TGTCAAGTTACACTAGATAAACCCTT 58.030 34.615 0.00 0.00 0.00 3.95
3642 3938 9.678941 GATAAACCCTTGTATAGCTAAAAATGC 57.321 33.333 0.00 0.00 0.00 3.56
3645 3941 8.451908 AACCCTTGTATAGCTAAAAATGCTAG 57.548 34.615 0.00 0.00 44.77 3.42
3646 3942 6.998673 ACCCTTGTATAGCTAAAAATGCTAGG 59.001 38.462 0.00 1.74 44.77 3.02
3691 3987 1.066929 GGCACCTATGGGCAACAAAAG 60.067 52.381 0.00 0.00 39.74 2.27
3732 4028 7.919385 ACTAATCCCTATGGCATCAAATTTT 57.081 32.000 1.65 0.00 0.00 1.82
3743 4039 5.245751 TGGCATCAAATTTTGTATGGTGAGT 59.754 36.000 8.89 0.00 0.00 3.41
3770 4066 2.028658 ACTACTGTGGTCTGACATGCAG 60.029 50.000 10.38 14.94 46.31 4.41
3782 4078 4.754372 TGACATGCAGAGTGTTTGATTC 57.246 40.909 0.00 0.00 0.00 2.52
3792 4088 6.203723 GCAGAGTGTTTGATTCAGACTACTTT 59.796 38.462 8.60 3.96 0.00 2.66
3797 4093 7.655328 AGTGTTTGATTCAGACTACTTTCTCAG 59.345 37.037 8.60 0.00 0.00 3.35
3801 4097 8.594881 TTGATTCAGACTACTTTCTCAGAAAC 57.405 34.615 0.00 0.00 0.00 2.78
3823 4119 3.290710 GGAATGCTTCATGCTTCCCTAA 58.709 45.455 0.00 0.00 40.17 2.69
3824 4120 3.067320 GGAATGCTTCATGCTTCCCTAAC 59.933 47.826 0.00 0.00 40.17 2.34
3825 4121 2.877097 TGCTTCATGCTTCCCTAACA 57.123 45.000 0.00 0.00 43.37 2.41
3826 4122 2.436417 TGCTTCATGCTTCCCTAACAC 58.564 47.619 0.00 0.00 43.37 3.32
3827 4123 2.224744 TGCTTCATGCTTCCCTAACACA 60.225 45.455 0.00 0.00 43.37 3.72
3828 4124 2.162408 GCTTCATGCTTCCCTAACACAC 59.838 50.000 0.00 0.00 38.95 3.82
3829 4125 3.679389 CTTCATGCTTCCCTAACACACT 58.321 45.455 0.00 0.00 0.00 3.55
3830 4126 3.334583 TCATGCTTCCCTAACACACTC 57.665 47.619 0.00 0.00 0.00 3.51
3831 4127 2.027192 TCATGCTTCCCTAACACACTCC 60.027 50.000 0.00 0.00 0.00 3.85
3832 4128 0.690762 TGCTTCCCTAACACACTCCC 59.309 55.000 0.00 0.00 0.00 4.30
3833 4129 0.984995 GCTTCCCTAACACACTCCCT 59.015 55.000 0.00 0.00 0.00 4.20
3834 4130 1.066071 GCTTCCCTAACACACTCCCTC 60.066 57.143 0.00 0.00 0.00 4.30
3835 4131 1.555533 CTTCCCTAACACACTCCCTCC 59.444 57.143 0.00 0.00 0.00 4.30
3836 4132 0.613853 TCCCTAACACACTCCCTCCG 60.614 60.000 0.00 0.00 0.00 4.63
3837 4133 0.903454 CCCTAACACACTCCCTCCGT 60.903 60.000 0.00 0.00 0.00 4.69
3838 4134 0.531200 CCTAACACACTCCCTCCGTC 59.469 60.000 0.00 0.00 0.00 4.79
3839 4135 1.546961 CTAACACACTCCCTCCGTCT 58.453 55.000 0.00 0.00 0.00 4.18
3840 4136 1.473278 CTAACACACTCCCTCCGTCTC 59.527 57.143 0.00 0.00 0.00 3.36
3841 4137 0.469331 AACACACTCCCTCCGTCTCA 60.469 55.000 0.00 0.00 0.00 3.27
3842 4138 0.469331 ACACACTCCCTCCGTCTCAA 60.469 55.000 0.00 0.00 0.00 3.02
3843 4139 0.679505 CACACTCCCTCCGTCTCAAA 59.320 55.000 0.00 0.00 0.00 2.69
3844 4140 1.070134 CACACTCCCTCCGTCTCAAAA 59.930 52.381 0.00 0.00 0.00 2.44
3845 4141 1.978580 ACACTCCCTCCGTCTCAAAAT 59.021 47.619 0.00 0.00 0.00 1.82
3846 4142 3.056107 CACACTCCCTCCGTCTCAAAATA 60.056 47.826 0.00 0.00 0.00 1.40
3847 4143 3.775316 ACACTCCCTCCGTCTCAAAATAT 59.225 43.478 0.00 0.00 0.00 1.28
3848 4144 4.960469 ACACTCCCTCCGTCTCAAAATATA 59.040 41.667 0.00 0.00 0.00 0.86
3849 4145 5.424252 ACACTCCCTCCGTCTCAAAATATAA 59.576 40.000 0.00 0.00 0.00 0.98
3850 4146 6.070424 ACACTCCCTCCGTCTCAAAATATAAA 60.070 38.462 0.00 0.00 0.00 1.40
3851 4147 6.821665 CACTCCCTCCGTCTCAAAATATAAAA 59.178 38.462 0.00 0.00 0.00 1.52
3852 4148 6.822170 ACTCCCTCCGTCTCAAAATATAAAAC 59.178 38.462 0.00 0.00 0.00 2.43
3853 4149 5.813672 TCCCTCCGTCTCAAAATATAAAACG 59.186 40.000 0.00 0.00 0.00 3.60
3854 4150 5.499047 CCTCCGTCTCAAAATATAAAACGC 58.501 41.667 0.00 0.00 0.00 4.84
3855 4151 5.293569 CCTCCGTCTCAAAATATAAAACGCT 59.706 40.000 0.00 0.00 0.00 5.07
3856 4152 6.477688 CCTCCGTCTCAAAATATAAAACGCTA 59.522 38.462 0.00 0.00 0.00 4.26
3857 4153 7.170998 CCTCCGTCTCAAAATATAAAACGCTAT 59.829 37.037 0.00 0.00 0.00 2.97
3858 4154 8.428186 TCCGTCTCAAAATATAAAACGCTATT 57.572 30.769 0.00 0.00 0.00 1.73
3859 4155 9.531942 TCCGTCTCAAAATATAAAACGCTATTA 57.468 29.630 0.00 0.00 0.00 0.98
3860 4156 9.577003 CCGTCTCAAAATATAAAACGCTATTAC 57.423 33.333 0.00 0.00 0.00 1.89
3874 4170 9.772973 AAAACGCTATTACATCCAATATACTCA 57.227 29.630 0.00 0.00 0.00 3.41
3875 4171 8.758633 AACGCTATTACATCCAATATACTCAC 57.241 34.615 0.00 0.00 0.00 3.51
3876 4172 7.892609 ACGCTATTACATCCAATATACTCACA 58.107 34.615 0.00 0.00 0.00 3.58
3877 4173 8.531982 ACGCTATTACATCCAATATACTCACAT 58.468 33.333 0.00 0.00 0.00 3.21
3895 4191 8.589335 ACTCACATATTGGATGTAATAACGTC 57.411 34.615 0.00 0.00 40.37 4.34
3896 4192 8.421784 ACTCACATATTGGATGTAATAACGTCT 58.578 33.333 0.00 0.00 40.82 4.18
3897 4193 9.261180 CTCACATATTGGATGTAATAACGTCTT 57.739 33.333 0.00 0.00 40.82 3.01
3906 4202 9.496873 TGGATGTAATAACGTCTTATATTTGGG 57.503 33.333 0.00 0.00 40.82 4.12
3907 4203 9.715121 GGATGTAATAACGTCTTATATTTGGGA 57.285 33.333 0.00 0.00 40.82 4.37
3910 4206 9.537192 TGTAATAACGTCTTATATTTGGGACAG 57.463 33.333 0.00 0.00 42.39 3.51
3911 4207 9.754382 GTAATAACGTCTTATATTTGGGACAGA 57.246 33.333 0.00 0.00 42.39 3.41
3912 4208 8.888579 AATAACGTCTTATATTTGGGACAGAG 57.111 34.615 0.00 0.00 42.39 3.35
3913 4209 5.277857 ACGTCTTATATTTGGGACAGAGG 57.722 43.478 0.00 0.00 42.39 3.69
3914 4210 4.101119 ACGTCTTATATTTGGGACAGAGGG 59.899 45.833 0.00 0.00 42.39 4.30
3915 4211 4.344102 CGTCTTATATTTGGGACAGAGGGA 59.656 45.833 0.00 0.00 42.39 4.20
3916 4212 5.509840 CGTCTTATATTTGGGACAGAGGGAG 60.510 48.000 0.00 0.00 42.39 4.30
3922 4218 3.421394 TTGGGACAGAGGGAGTATCAT 57.579 47.619 0.00 0.00 42.39 2.45
3932 4228 7.957002 ACAGAGGGAGTATCATACTATTGTTG 58.043 38.462 0.00 0.00 39.59 3.33
3961 4257 2.496899 TCTCTTGCCATTTCAGGTCC 57.503 50.000 0.00 0.00 0.00 4.46
3964 4260 0.890683 CTTGCCATTTCAGGTCCACC 59.109 55.000 0.00 0.00 0.00 4.61
3971 4267 3.498481 CCATTTCAGGTCCACCAGAGAAA 60.498 47.826 11.20 11.20 37.67 2.52
3973 4269 2.930826 TCAGGTCCACCAGAGAAAAC 57.069 50.000 0.00 0.00 38.89 2.43
3981 4277 2.079925 CACCAGAGAAAACTAGGCAGC 58.920 52.381 0.00 0.00 0.00 5.25
3999 4295 2.344441 CAGCGAATCTGCAGCAAAATTG 59.656 45.455 9.47 0.00 35.78 2.32
4000 4296 2.029649 AGCGAATCTGCAGCAAAATTGT 60.030 40.909 9.47 0.00 37.31 2.71
4050 4346 6.404074 GGTTTTCAGCTCATCTTCATTGTAGG 60.404 42.308 0.00 0.00 0.00 3.18
4098 4394 4.304537 GGATGGACCTACGACTAAGTTC 57.695 50.000 0.00 0.00 35.41 3.01
4104 4400 2.895404 ACCTACGACTAAGTTCCTTGCA 59.105 45.455 0.00 0.00 0.00 4.08
4107 4403 3.027974 ACGACTAAGTTCCTTGCACTC 57.972 47.619 0.00 0.00 0.00 3.51
4158 4454 4.873010 TGCAGGTACTCTTATCTCCTCTT 58.127 43.478 0.00 0.00 34.60 2.85
4159 4455 5.273208 TGCAGGTACTCTTATCTCCTCTTT 58.727 41.667 0.00 0.00 34.60 2.52
4163 4459 5.591067 AGGTACTCTTATCTCCTCTTTCACG 59.409 44.000 0.00 0.00 0.00 4.35
4164 4460 4.379339 ACTCTTATCTCCTCTTTCACGC 57.621 45.455 0.00 0.00 0.00 5.34
4165 4461 4.020543 ACTCTTATCTCCTCTTTCACGCT 58.979 43.478 0.00 0.00 0.00 5.07
4171 4467 4.008074 TCTCCTCTTTCACGCTCATTTT 57.992 40.909 0.00 0.00 0.00 1.82
4172 4468 3.748048 TCTCCTCTTTCACGCTCATTTTG 59.252 43.478 0.00 0.00 0.00 2.44
4178 4474 1.234821 TCACGCTCATTTTGACCACC 58.765 50.000 0.00 0.00 0.00 4.61
4187 4483 5.988561 GCTCATTTTGACCACCACAAATAAA 59.011 36.000 0.00 0.00 37.15 1.40
4190 4486 8.970859 TCATTTTGACCACCACAAATAAATTT 57.029 26.923 0.00 0.00 37.15 1.82
4195 4491 7.118496 TGACCACCACAAATAAATTTCTTGT 57.882 32.000 11.09 11.09 33.62 3.16
4199 4495 7.923878 ACCACCACAAATAAATTTCTTGTACAC 59.076 33.333 14.80 0.00 32.16 2.90
4221 4517 7.820648 ACACATTTGTTCTAAGATGTCAATCC 58.179 34.615 0.00 0.00 29.25 3.01
4252 4548 6.332635 AGGTAATAGACATTCCATCCAATCCA 59.667 38.462 0.00 0.00 0.00 3.41
4267 4563 5.634118 TCCAATCCAGGACCATATGAAATC 58.366 41.667 3.65 0.00 31.23 2.17
4361 4657 4.592485 ACAATTCGGTTGGTGCATAAAA 57.408 36.364 0.00 0.00 42.28 1.52
4368 4669 4.279671 TCGGTTGGTGCATAAAATGTCTTT 59.720 37.500 0.00 0.00 0.00 2.52
4369 4670 5.473846 TCGGTTGGTGCATAAAATGTCTTTA 59.526 36.000 0.00 0.00 0.00 1.85
4444 4745 4.159135 AGCTGGAGTAATTCAATTGGCTTG 59.841 41.667 5.42 0.00 36.09 4.01
4455 4757 4.072131 TCAATTGGCTTGTCTACAGGAAC 58.928 43.478 5.42 0.00 36.20 3.62
4467 4769 4.680567 GTCTACAGGAACGAAGAACTTGAC 59.319 45.833 0.00 0.00 0.00 3.18
4471 4773 4.511826 ACAGGAACGAAGAACTTGACATTC 59.488 41.667 0.00 0.00 0.00 2.67
4598 4900 3.821306 CCCCCATAGCAGGTAAACC 57.179 57.895 0.00 0.00 0.00 3.27
4646 4948 9.905713 TGAGCCATAAATATTATGGATTCTACC 57.094 33.333 25.85 12.36 43.03 3.18
4676 4978 4.245660 TGTTTCTTGATCTTGAGCTACCG 58.754 43.478 0.00 0.00 0.00 4.02
4694 4996 6.209391 AGCTACCGTACAGTTTTCCTTTAGTA 59.791 38.462 0.00 0.00 0.00 1.82
4821 5124 5.968261 GCTCTTTCTTTGTCAAACTTCTGAC 59.032 40.000 0.00 0.00 45.01 3.51
4958 5269 6.757010 GGTATGTTTCTCGCTCTCTGATAAAA 59.243 38.462 0.00 0.00 0.00 1.52
4984 5295 0.380378 GGCTGTAGCTCAGTCTCTCG 59.620 60.000 12.71 0.00 44.52 4.04
5025 5337 0.248289 AGTTTCATGCATGCCAAGCC 59.752 50.000 22.25 6.76 0.00 4.35
5055 5389 6.246420 AGTCAGTTTGCACTTCATGAATAC 57.754 37.500 8.96 2.19 0.00 1.89
5056 5390 6.000219 AGTCAGTTTGCACTTCATGAATACT 59.000 36.000 8.96 3.61 0.00 2.12
5057 5391 6.148480 AGTCAGTTTGCACTTCATGAATACTC 59.852 38.462 8.96 0.00 0.00 2.59
5058 5392 5.412594 TCAGTTTGCACTTCATGAATACTCC 59.587 40.000 8.96 0.00 0.00 3.85
5059 5393 4.702131 AGTTTGCACTTCATGAATACTCCC 59.298 41.667 8.96 0.00 0.00 4.30
5060 5394 4.574674 TTGCACTTCATGAATACTCCCT 57.425 40.909 8.96 0.00 0.00 4.20
5061 5395 4.142609 TGCACTTCATGAATACTCCCTC 57.857 45.455 8.96 0.00 0.00 4.30
5062 5396 3.118261 TGCACTTCATGAATACTCCCTCC 60.118 47.826 8.96 0.00 0.00 4.30
5063 5397 3.722147 CACTTCATGAATACTCCCTCCG 58.278 50.000 8.96 0.00 0.00 4.63
5064 5398 3.133003 CACTTCATGAATACTCCCTCCGT 59.867 47.826 8.96 0.00 0.00 4.69
5065 5399 3.385111 ACTTCATGAATACTCCCTCCGTC 59.615 47.826 8.96 0.00 0.00 4.79
5066 5400 2.317040 TCATGAATACTCCCTCCGTCC 58.683 52.381 0.00 0.00 0.00 4.79
5067 5401 1.344763 CATGAATACTCCCTCCGTCCC 59.655 57.143 0.00 0.00 0.00 4.46
5068 5402 0.337082 TGAATACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
5069 5403 1.273381 TGAATACTCCCTCCGTCCCAA 60.273 52.381 0.00 0.00 0.00 4.12
5070 5404 1.835531 GAATACTCCCTCCGTCCCAAA 59.164 52.381 0.00 0.00 0.00 3.28
5071 5405 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
5072 5406 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
5073 5407 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5074 5408 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
5075 5409 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
5076 5410 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
5077 5411 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
5078 5412 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
5079 5413 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
5080 5414 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
5081 5415 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
5082 5416 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
5083 5417 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
5084 5418 4.154195 CCGTCCCAAAATAAGTGTCTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
5085 5419 4.378459 CGTCCCAAAATAAGTGTCTCAAGC 60.378 45.833 0.00 0.00 0.00 4.01
5086 5420 4.762251 GTCCCAAAATAAGTGTCTCAAGCT 59.238 41.667 0.00 0.00 0.00 3.74
5087 5421 5.241728 GTCCCAAAATAAGTGTCTCAAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
5088 5422 6.430000 GTCCCAAAATAAGTGTCTCAAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
5089 5423 6.655003 TCCCAAAATAAGTGTCTCAAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
5090 5424 6.431234 CCCAAAATAAGTGTCTCAAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
5091 5425 7.606456 CCCAAAATAAGTGTCTCAAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
5092 5426 8.443937 CCAAAATAAGTGTCTCAAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
5093 5427 8.988934 CAAAATAAGTGTCTCAAGCTTAGTACA 58.011 33.333 0.00 0.36 0.00 2.90
5094 5428 9.555727 AAAATAAGTGTCTCAAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
5095 5429 9.726438 AAATAAGTGTCTCAAGCTTAGTACAAT 57.274 29.630 0.00 0.00 0.00 2.71
5096 5430 9.726438 AATAAGTGTCTCAAGCTTAGTACAATT 57.274 29.630 17.97 17.97 0.00 2.32
5097 5431 9.726438 ATAAGTGTCTCAAGCTTAGTACAATTT 57.274 29.630 18.67 13.34 0.00 1.82
5098 5432 8.451908 AAGTGTCTCAAGCTTAGTACAATTTT 57.548 30.769 0.00 0.00 0.00 1.82
5099 5433 9.555727 AAGTGTCTCAAGCTTAGTACAATTTTA 57.444 29.630 0.00 0.00 0.00 1.52
5100 5434 8.989980 AGTGTCTCAAGCTTAGTACAATTTTAC 58.010 33.333 0.00 0.00 0.00 2.01
5101 5435 8.770828 GTGTCTCAAGCTTAGTACAATTTTACA 58.229 33.333 0.00 0.00 0.00 2.41
5102 5436 8.770828 TGTCTCAAGCTTAGTACAATTTTACAC 58.229 33.333 0.00 0.00 0.00 2.90
5103 5437 8.989980 GTCTCAAGCTTAGTACAATTTTACACT 58.010 33.333 0.00 0.00 0.00 3.55
5138 5472 8.506168 ACAAAGTTGAGACACTTATTTTGAGA 57.494 30.769 0.00 0.00 35.87 3.27
5139 5473 8.398665 ACAAAGTTGAGACACTTATTTTGAGAC 58.601 33.333 0.00 0.00 35.87 3.36
5140 5474 6.771188 AGTTGAGACACTTATTTTGAGACG 57.229 37.500 0.00 0.00 0.00 4.18
5141 5475 5.696724 AGTTGAGACACTTATTTTGAGACGG 59.303 40.000 0.00 0.00 0.00 4.79
5142 5476 5.462530 TGAGACACTTATTTTGAGACGGA 57.537 39.130 0.00 0.00 0.00 4.69
5143 5477 5.470368 TGAGACACTTATTTTGAGACGGAG 58.530 41.667 0.00 0.00 0.00 4.63
5144 5478 4.822026 AGACACTTATTTTGAGACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
5145 5479 3.933332 GACACTTATTTTGAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
5146 5480 3.581332 ACACTTATTTTGAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
5147 5481 4.184629 CACTTATTTTGAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
5148 5482 3.838903 ACTTATTTTGAGACGGAGGGAGT 59.161 43.478 0.00 0.00 0.00 3.85
5149 5483 5.021458 ACTTATTTTGAGACGGAGGGAGTA 58.979 41.667 0.00 0.00 0.00 2.59
5397 5791 7.125792 AGTAGTTCTGTTGTATTATCCCTGG 57.874 40.000 0.00 0.00 0.00 4.45
5449 5845 4.586841 GGATGTCATTACCTCTGTAGAGCT 59.413 45.833 3.34 0.00 40.75 4.09
5522 5918 4.260139 TGCTTGATTACGAGGTGTAACA 57.740 40.909 0.00 0.00 45.43 2.41
5545 5948 6.127054 ACAGGAGTTATATGCTAGCACAAGAA 60.127 38.462 22.07 12.10 0.00 2.52
5670 6074 0.613260 TGGATAGCAAGCTTCCACGT 59.387 50.000 16.61 0.00 34.65 4.49
5680 6084 0.824759 GCTTCCACGTATCCCTGTCT 59.175 55.000 0.00 0.00 0.00 3.41
5785 6189 0.317160 TCTTGACATTCTCCGCACGT 59.683 50.000 0.00 0.00 0.00 4.49
5787 6191 0.865111 TTGACATTCTCCGCACGTTG 59.135 50.000 0.00 0.00 0.00 4.10
5792 6196 0.246635 ATTCTCCGCACGTTGTAGCT 59.753 50.000 0.00 0.00 0.00 3.32
5795 6199 0.109458 CTCCGCACGTTGTAGCTGTA 60.109 55.000 0.00 0.00 0.00 2.74
5821 6225 0.964358 GCATTGCAGCTTCTGGAGGT 60.964 55.000 3.15 0.00 32.58 3.85
5843 6247 2.756760 CTGCACTGAATATGCCCAAACT 59.243 45.455 0.00 0.00 42.69 2.66
5869 6273 4.196193 TCAGACGATGTTGGACAAACTTT 58.804 39.130 0.00 0.00 39.70 2.66
5874 6278 5.961272 ACGATGTTGGACAAACTTTTCTTT 58.039 33.333 0.00 0.00 39.70 2.52
5875 6279 5.804979 ACGATGTTGGACAAACTTTTCTTTG 59.195 36.000 0.00 0.00 39.70 2.77
5892 6296 2.214376 TTGATTGGTGCTACCCCAAG 57.786 50.000 0.00 0.00 44.74 3.61
5992 6397 3.304659 CCACACCTAACTGTTGAACATGC 60.305 47.826 0.00 0.00 0.00 4.06
5994 6399 2.884012 CACCTAACTGTTGAACATGCCA 59.116 45.455 0.00 0.00 0.00 4.92
6030 6436 1.328680 CACTCAGCGCCATACAACATC 59.671 52.381 2.29 0.00 0.00 3.06
6077 6483 4.736126 ACTTGCCTTTTAGCTTTTGTGT 57.264 36.364 0.00 0.00 0.00 3.72
6170 6576 8.686334 GTTCACATCTTTATCAATACCACCATT 58.314 33.333 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 121 0.795698 CATTGTCAACGATCGGCACA 59.204 50.000 20.98 15.16 0.00 4.57
272 300 2.301577 AGTTCAGAAGCTATGACCGC 57.698 50.000 1.16 0.00 0.00 5.68
305 333 9.804977 AGGATAGGATTTGAAAATTATCCTCTG 57.195 33.333 16.54 0.00 43.61 3.35
307 335 9.799106 TCAGGATAGGATTTGAAAATTATCCTC 57.201 33.333 18.17 0.00 43.61 3.71
331 359 3.689161 CAGAATGGTGTTTAGGCGATTCA 59.311 43.478 0.00 0.00 33.97 2.57
477 558 4.083164 GGGGGTACTTTCAAATGTGTTACG 60.083 45.833 0.00 0.00 0.00 3.18
497 581 4.840271 ACAAGTATTTCTAAACGGAGGGG 58.160 43.478 0.00 0.00 0.00 4.79
498 582 5.484715 TGACAAGTATTTCTAAACGGAGGG 58.515 41.667 0.00 0.00 0.00 4.30
499 583 6.816640 TGATGACAAGTATTTCTAAACGGAGG 59.183 38.462 0.00 0.00 0.00 4.30
500 584 7.827819 TGATGACAAGTATTTCTAAACGGAG 57.172 36.000 0.00 0.00 0.00 4.63
501 585 8.610248 TTTGATGACAAGTATTTCTAAACGGA 57.390 30.769 0.00 0.00 37.32 4.69
502 586 9.840427 ATTTTGATGACAAGTATTTCTAAACGG 57.160 29.630 0.00 0.00 37.32 4.44
576 660 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
577 661 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
578 662 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
579 663 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
580 664 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
581 665 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
582 666 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
583 667 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
584 668 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
585 669 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
586 670 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
587 671 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
588 672 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
589 673 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
590 674 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
591 675 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
592 676 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
593 677 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
594 678 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
595 679 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
596 680 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
597 681 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
598 682 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
599 683 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
600 684 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
601 685 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
602 686 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
603 687 0.251297 TTGTACTCCCTCCGTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
604 688 0.679002 CTTGTACTCCCTCCGTCCGA 60.679 60.000 0.00 0.00 0.00 4.55
605 689 0.679002 TCTTGTACTCCCTCCGTCCG 60.679 60.000 0.00 0.00 0.00 4.79
606 690 1.553706 TTCTTGTACTCCCTCCGTCC 58.446 55.000 0.00 0.00 0.00 4.79
607 691 3.672767 TTTTCTTGTACTCCCTCCGTC 57.327 47.619 0.00 0.00 0.00 4.79
608 692 3.581332 TGATTTTCTTGTACTCCCTCCGT 59.419 43.478 0.00 0.00 0.00 4.69
609 693 4.184629 CTGATTTTCTTGTACTCCCTCCG 58.815 47.826 0.00 0.00 0.00 4.63
610 694 5.167303 ACTGATTTTCTTGTACTCCCTCC 57.833 43.478 0.00 0.00 0.00 4.30
611 695 5.813157 GCTACTGATTTTCTTGTACTCCCTC 59.187 44.000 0.00 0.00 0.00 4.30
612 696 5.248477 TGCTACTGATTTTCTTGTACTCCCT 59.752 40.000 0.00 0.00 0.00 4.20
613 697 5.488341 TGCTACTGATTTTCTTGTACTCCC 58.512 41.667 0.00 0.00 0.00 4.30
614 698 6.166982 ACTGCTACTGATTTTCTTGTACTCC 58.833 40.000 0.00 0.00 0.00 3.85
615 699 7.008447 CGTACTGCTACTGATTTTCTTGTACTC 59.992 40.741 0.00 0.00 0.00 2.59
616 700 6.807230 CGTACTGCTACTGATTTTCTTGTACT 59.193 38.462 0.00 0.00 0.00 2.73
617 701 6.585322 ACGTACTGCTACTGATTTTCTTGTAC 59.415 38.462 0.00 0.00 0.00 2.90
618 702 6.684686 ACGTACTGCTACTGATTTTCTTGTA 58.315 36.000 0.00 0.00 0.00 2.41
619 703 5.539048 ACGTACTGCTACTGATTTTCTTGT 58.461 37.500 0.00 0.00 0.00 3.16
620 704 6.467723 AACGTACTGCTACTGATTTTCTTG 57.532 37.500 0.00 0.00 0.00 3.02
621 705 6.307318 CGTAACGTACTGCTACTGATTTTCTT 59.693 38.462 0.00 0.00 0.00 2.52
622 706 5.798934 CGTAACGTACTGCTACTGATTTTCT 59.201 40.000 0.00 0.00 0.00 2.52
623 707 5.796935 TCGTAACGTACTGCTACTGATTTTC 59.203 40.000 0.00 0.00 0.00 2.29
624 708 5.702865 TCGTAACGTACTGCTACTGATTTT 58.297 37.500 0.00 0.00 0.00 1.82
625 709 5.300969 TCGTAACGTACTGCTACTGATTT 57.699 39.130 0.00 0.00 0.00 2.17
626 710 4.952262 TCGTAACGTACTGCTACTGATT 57.048 40.909 0.00 0.00 0.00 2.57
679 775 6.720309 TGTGAATCATGTCAAGGGATCTTAA 58.280 36.000 0.00 0.00 0.00 1.85
748 844 1.220749 GCCGGATTCAGCACTGGTA 59.779 57.895 5.05 0.00 35.23 3.25
775 871 3.866582 CTGTGGGCCGGATCCTCC 61.867 72.222 5.05 10.63 0.00 4.30
782 878 2.125106 GTTAGAGCTGTGGGCCGG 60.125 66.667 0.00 0.00 43.05 6.13
810 906 1.928868 AGTTTGGGGCAGAATTCTGG 58.071 50.000 31.41 16.52 43.94 3.86
856 958 4.072131 TCGAGTTCTTTTTCCCCTTCATG 58.928 43.478 0.00 0.00 0.00 3.07
857 959 4.072839 GTCGAGTTCTTTTTCCCCTTCAT 58.927 43.478 0.00 0.00 0.00 2.57
858 960 3.118186 TGTCGAGTTCTTTTTCCCCTTCA 60.118 43.478 0.00 0.00 0.00 3.02
859 961 3.250280 GTGTCGAGTTCTTTTTCCCCTTC 59.750 47.826 0.00 0.00 0.00 3.46
860 962 3.211865 GTGTCGAGTTCTTTTTCCCCTT 58.788 45.455 0.00 0.00 0.00 3.95
865 967 1.878088 GGGGGTGTCGAGTTCTTTTTC 59.122 52.381 0.00 0.00 0.00 2.29
894 1012 3.245264 CCCCACTTTACTTCTCCATTGGT 60.245 47.826 1.86 0.00 0.00 3.67
895 1013 3.356290 CCCCACTTTACTTCTCCATTGG 58.644 50.000 0.00 0.00 0.00 3.16
896 1014 2.755103 GCCCCACTTTACTTCTCCATTG 59.245 50.000 0.00 0.00 0.00 2.82
897 1015 2.378547 TGCCCCACTTTACTTCTCCATT 59.621 45.455 0.00 0.00 0.00 3.16
898 1016 1.992557 TGCCCCACTTTACTTCTCCAT 59.007 47.619 0.00 0.00 0.00 3.41
899 1017 1.440618 TGCCCCACTTTACTTCTCCA 58.559 50.000 0.00 0.00 0.00 3.86
900 1018 2.579410 TTGCCCCACTTTACTTCTCC 57.421 50.000 0.00 0.00 0.00 3.71
901 1019 4.142038 TCTTTTGCCCCACTTTACTTCTC 58.858 43.478 0.00 0.00 0.00 2.87
902 1020 4.178956 TCTTTTGCCCCACTTTACTTCT 57.821 40.909 0.00 0.00 0.00 2.85
903 1021 4.082190 GGATCTTTTGCCCCACTTTACTTC 60.082 45.833 0.00 0.00 0.00 3.01
904 1022 3.832490 GGATCTTTTGCCCCACTTTACTT 59.168 43.478 0.00 0.00 0.00 2.24
905 1023 3.181423 TGGATCTTTTGCCCCACTTTACT 60.181 43.478 0.00 0.00 0.00 2.24
906 1024 3.161866 TGGATCTTTTGCCCCACTTTAC 58.838 45.455 0.00 0.00 0.00 2.01
907 1025 3.534357 TGGATCTTTTGCCCCACTTTA 57.466 42.857 0.00 0.00 0.00 1.85
908 1026 2.397044 TGGATCTTTTGCCCCACTTT 57.603 45.000 0.00 0.00 0.00 2.66
909 1027 2.397044 TTGGATCTTTTGCCCCACTT 57.603 45.000 0.00 0.00 0.00 3.16
910 1028 2.629017 ATTGGATCTTTTGCCCCACT 57.371 45.000 0.00 0.00 0.00 4.00
911 1029 3.261643 AGAAATTGGATCTTTTGCCCCAC 59.738 43.478 0.00 0.00 0.00 4.61
912 1030 3.515104 GAGAAATTGGATCTTTTGCCCCA 59.485 43.478 0.00 0.00 0.00 4.96
913 1031 3.118629 GGAGAAATTGGATCTTTTGCCCC 60.119 47.826 0.00 0.00 0.00 5.80
914 1032 3.118629 GGGAGAAATTGGATCTTTTGCCC 60.119 47.826 0.00 0.00 0.00 5.36
915 1033 3.429410 CGGGAGAAATTGGATCTTTTGCC 60.429 47.826 0.00 0.00 0.00 4.52
916 1034 3.193479 ACGGGAGAAATTGGATCTTTTGC 59.807 43.478 0.00 0.00 0.00 3.68
917 1035 4.737054 CACGGGAGAAATTGGATCTTTTG 58.263 43.478 0.00 0.00 0.00 2.44
918 1036 3.193479 GCACGGGAGAAATTGGATCTTTT 59.807 43.478 0.00 0.00 0.00 2.27
919 1037 2.755103 GCACGGGAGAAATTGGATCTTT 59.245 45.455 0.00 0.00 0.00 2.52
920 1038 2.025887 AGCACGGGAGAAATTGGATCTT 60.026 45.455 0.00 0.00 0.00 2.40
921 1039 1.561542 AGCACGGGAGAAATTGGATCT 59.438 47.619 0.00 0.00 0.00 2.75
922 1040 1.672881 CAGCACGGGAGAAATTGGATC 59.327 52.381 0.00 0.00 0.00 3.36
923 1041 1.755179 CAGCACGGGAGAAATTGGAT 58.245 50.000 0.00 0.00 0.00 3.41
924 1042 0.960364 GCAGCACGGGAGAAATTGGA 60.960 55.000 0.00 0.00 0.00 3.53
925 1043 0.962356 AGCAGCACGGGAGAAATTGG 60.962 55.000 0.00 0.00 0.00 3.16
926 1044 0.883833 AAGCAGCACGGGAGAAATTG 59.116 50.000 0.00 0.00 0.00 2.32
927 1045 1.168714 GAAGCAGCACGGGAGAAATT 58.831 50.000 0.00 0.00 0.00 1.82
928 1046 0.678048 GGAAGCAGCACGGGAGAAAT 60.678 55.000 0.00 0.00 0.00 2.17
929 1047 1.302511 GGAAGCAGCACGGGAGAAA 60.303 57.895 0.00 0.00 0.00 2.52
930 1048 2.347490 GGAAGCAGCACGGGAGAA 59.653 61.111 0.00 0.00 0.00 2.87
931 1049 3.706373 GGGAAGCAGCACGGGAGA 61.706 66.667 0.00 0.00 0.00 3.71
932 1050 4.785453 GGGGAAGCAGCACGGGAG 62.785 72.222 0.00 0.00 0.00 4.30
1018 1137 3.080121 AGGGCAGGAGAGCTTCGG 61.080 66.667 0.00 0.00 34.17 4.30
1023 1142 2.860972 GAAACGGAGGGCAGGAGAGC 62.861 65.000 0.00 0.00 0.00 4.09
1033 1152 3.321497 GCTGCATATAGAGAAACGGAGG 58.679 50.000 0.00 0.00 0.00 4.30
1046 1165 1.800805 GAGCACATACGGCTGCATAT 58.199 50.000 0.50 0.00 42.78 1.78
1047 1166 3.289128 GAGCACATACGGCTGCATA 57.711 52.632 0.50 0.00 42.78 3.14
1068 1187 1.732259 GTGAACCTATTGACCAGTGCG 59.268 52.381 0.00 0.00 0.00 5.34
1073 1192 2.610976 CGAACCGTGAACCTATTGACCA 60.611 50.000 0.00 0.00 0.00 4.02
1087 1206 1.370064 CAGAAACTCCCCGAACCGT 59.630 57.895 0.00 0.00 0.00 4.83
1088 1207 0.949105 CACAGAAACTCCCCGAACCG 60.949 60.000 0.00 0.00 0.00 4.44
1151 1270 4.794439 TCCACCGCGATCTGCACG 62.794 66.667 8.23 0.00 46.97 5.34
1184 1303 0.888619 CGTAGACCTTGTCCAGCTCA 59.111 55.000 0.00 0.00 32.18 4.26
1280 1399 2.530151 AGGGGACTGCAGCCTGAA 60.530 61.111 15.27 0.00 41.13 3.02
1315 1580 3.696548 GGGAAAAATAACTCCAGCTCCAG 59.303 47.826 0.00 0.00 32.95 3.86
1329 1594 5.626578 CGCAATGTATTCAAGGGGGAAAAAT 60.627 40.000 0.00 0.00 0.00 1.82
1335 1602 1.949525 CTCGCAATGTATTCAAGGGGG 59.050 52.381 0.00 0.00 0.00 5.40
1362 1629 0.745128 ACACCAACGTCGAGCCAAAA 60.745 50.000 0.00 0.00 0.00 2.44
1665 1940 4.433615 ACTTGTCCATGCTACATAGAACG 58.566 43.478 0.55 0.00 0.00 3.95
1674 1949 6.883756 TGTGAATAATCAACTTGTCCATGCTA 59.116 34.615 0.00 0.00 37.30 3.49
1741 2016 6.857964 ACGTACATAGAATTAATACCGAACGG 59.142 38.462 11.83 11.83 42.03 4.44
1742 2017 7.376866 ACACGTACATAGAATTAATACCGAACG 59.623 37.037 0.00 0.00 0.00 3.95
1743 2018 8.566008 ACACGTACATAGAATTAATACCGAAC 57.434 34.615 0.00 0.00 0.00 3.95
1744 2019 9.022915 CAACACGTACATAGAATTAATACCGAA 57.977 33.333 0.00 0.00 0.00 4.30
1745 2020 8.404765 TCAACACGTACATAGAATTAATACCGA 58.595 33.333 0.00 0.00 0.00 4.69
1746 2021 8.564648 TCAACACGTACATAGAATTAATACCG 57.435 34.615 0.00 0.00 0.00 4.02
1801 2076 2.025981 TCATTCCTTACAGCCTGCATGT 60.026 45.455 0.00 0.00 34.62 3.21
1844 2119 1.528161 GTACGAAACTTTGGTGGGACG 59.472 52.381 0.00 0.00 0.00 4.79
2162 2437 1.200519 CATCCTTGTCCCGGTTAGGA 58.799 55.000 11.91 11.91 45.00 2.94
2163 2438 1.200519 TCATCCTTGTCCCGGTTAGG 58.799 55.000 0.00 1.08 40.63 2.69
2165 2440 2.759355 AGATCATCCTTGTCCCGGTTA 58.241 47.619 0.00 0.00 0.00 2.85
2232 2508 5.725551 ATGAATAATTACAGGGACCACCA 57.274 39.130 0.00 0.00 43.89 4.17
2233 2509 7.074653 TCTATGAATAATTACAGGGACCACC 57.925 40.000 0.00 0.00 40.67 4.61
2241 2517 9.542462 TCCCGAAGTTTCTATGAATAATTACAG 57.458 33.333 0.00 0.00 0.00 2.74
2247 2523 9.893634 TTTACATCCCGAAGTTTCTATGAATAA 57.106 29.630 0.00 0.00 0.00 1.40
2294 2570 5.951747 AGCCTTAGATTCAAAACAATGCCTA 59.048 36.000 0.00 0.00 0.00 3.93
2319 2595 7.768120 AGCAGATATTAGTTCAAAACCAGAGAG 59.232 37.037 0.00 0.00 0.00 3.20
2410 2687 9.559958 CCTCATCATTTAACAACAATACTCAAC 57.440 33.333 0.00 0.00 0.00 3.18
2426 2703 5.280654 AGCAAAACAACACCTCATCATTT 57.719 34.783 0.00 0.00 0.00 2.32
2480 2759 4.386867 ACCTGATAGTGATTACACCACG 57.613 45.455 0.00 0.00 46.99 4.94
2490 2769 5.924769 TCCTCCATAGTACCTGATAGTGA 57.075 43.478 0.00 0.00 0.00 3.41
2615 2894 7.730364 AGATATTAATAAACTTGCCTCGGTG 57.270 36.000 0.00 0.00 0.00 4.94
2647 2926 9.886132 ATACAAATCTCCGAACTACAAAGTAAT 57.114 29.630 0.00 0.00 33.75 1.89
2648 2927 9.715121 AATACAAATCTCCGAACTACAAAGTAA 57.285 29.630 0.00 0.00 33.75 2.24
2678 2957 9.944376 AGACAGTAACTTCTAGATGCAATTTAA 57.056 29.630 5.57 0.00 0.00 1.52
2680 2959 9.593134 CTAGACAGTAACTTCTAGATGCAATTT 57.407 33.333 5.57 0.00 42.77 1.82
2681 2960 8.200792 CCTAGACAGTAACTTCTAGATGCAATT 58.799 37.037 13.33 0.00 42.77 2.32
2682 2961 7.201956 CCCTAGACAGTAACTTCTAGATGCAAT 60.202 40.741 13.33 0.00 42.77 3.56
2694 2973 4.221041 GCTTCAACTCCCTAGACAGTAACT 59.779 45.833 0.00 0.00 0.00 2.24
2699 2978 2.183679 AGGCTTCAACTCCCTAGACAG 58.816 52.381 0.00 0.00 0.00 3.51
2712 2991 3.054361 GGACCCTTCTTCAATAGGCTTCA 60.054 47.826 0.00 0.00 0.00 3.02
2743 3022 4.331717 CAGGGTGTAATGACATTTACCGTC 59.668 45.833 18.77 11.42 38.04 4.79
2746 3025 5.708230 TGTTCAGGGTGTAATGACATTTACC 59.292 40.000 18.87 18.87 38.04 2.85
2760 3039 2.082231 CTGAATGCTCTGTTCAGGGTG 58.918 52.381 7.75 0.00 45.50 4.61
2809 3088 1.133482 TCGTATGGAGGCCTCTCATGA 60.133 52.381 31.28 23.75 41.69 3.07
2935 3214 5.010012 CCAGTTTCCATATTCAGTAATGCCC 59.990 44.000 0.00 0.00 0.00 5.36
2977 3256 3.877508 CCTCTTCTGTGAAGAACGGTTTT 59.122 43.478 10.63 0.00 36.45 2.43
2991 3270 5.245531 TGCAACTTGGTATTACCTCTTCTG 58.754 41.667 13.90 6.36 39.58 3.02
3014 3293 9.088987 ACACAAAATAATCCCTTATGTCAGTTT 57.911 29.630 0.00 0.00 0.00 2.66
3017 3296 8.190784 GGAACACAAAATAATCCCTTATGTCAG 58.809 37.037 0.00 0.00 0.00 3.51
3042 3321 1.466950 ACGCGGACATAACAAATGTGG 59.533 47.619 12.47 0.00 31.52 4.17
3161 3440 9.685828 GTAGATCTTATGTCTAGTTGGCTTAAG 57.314 37.037 0.00 0.00 38.55 1.85
3226 3505 3.546724 GCTTTATTCCTCAGAGGGTTCC 58.453 50.000 17.10 0.00 35.59 3.62
3244 3525 4.263683 ACTCTTCTAATTCTGGCTTGGCTT 60.264 41.667 0.00 0.00 0.00 4.35
3324 3605 9.690913 ATGGCTTGAATATGTTGCATAGTATAT 57.309 29.630 0.00 0.00 0.00 0.86
3325 3606 8.949177 CATGGCTTGAATATGTTGCATAGTATA 58.051 33.333 0.00 0.00 0.00 1.47
3326 3607 7.094075 CCATGGCTTGAATATGTTGCATAGTAT 60.094 37.037 0.00 0.00 0.00 2.12
3329 3610 5.466819 CCATGGCTTGAATATGTTGCATAG 58.533 41.667 0.00 0.00 0.00 2.23
3332 3613 2.159071 GCCATGGCTTGAATATGTTGCA 60.159 45.455 29.98 0.00 38.26 4.08
3357 3638 9.989296 AGGCATATATGTTATAGAGAGAAGAGT 57.011 33.333 14.14 0.00 0.00 3.24
3362 3643 7.201830 GCGGAAGGCATATATGTTATAGAGAGA 60.202 40.741 14.14 0.00 42.87 3.10
3363 3644 6.920758 GCGGAAGGCATATATGTTATAGAGAG 59.079 42.308 14.14 0.55 42.87 3.20
3364 3645 6.806751 GCGGAAGGCATATATGTTATAGAGA 58.193 40.000 14.14 0.00 42.87 3.10
3385 3666 2.416547 CACAAGGTTAGATGAGTTGCGG 59.583 50.000 0.00 0.00 0.00 5.69
3388 3669 6.824305 ATTTCCACAAGGTTAGATGAGTTG 57.176 37.500 0.00 0.00 35.89 3.16
3407 3694 4.287766 ACACACTCCCTTGAGGTATTTC 57.712 45.455 0.00 0.00 43.29 2.17
3412 3699 3.046374 AGTTAACACACTCCCTTGAGGT 58.954 45.455 8.61 0.00 43.29 3.85
3430 3717 3.951037 TGACACTGTGGCACAATAAAGTT 59.049 39.130 22.31 6.57 44.16 2.66
3442 3729 3.627123 TGACTCAAAATGTGACACTGTGG 59.373 43.478 13.09 0.00 31.13 4.17
3443 3730 4.880886 TGACTCAAAATGTGACACTGTG 57.119 40.909 6.19 6.19 31.13 3.66
3474 3761 8.726988 GGCCTCGCTTATTTATTGTATTATTCA 58.273 33.333 0.00 0.00 0.00 2.57
3483 3770 4.836125 ATGTGGCCTCGCTTATTTATTG 57.164 40.909 3.32 0.00 0.00 1.90
3497 3784 6.477688 CAGTAATCATCATGAAAAATGTGGCC 59.522 38.462 0.00 0.00 0.00 5.36
3547 3834 0.910338 AGCTGATCACAGATGCTGGT 59.090 50.000 5.66 0.00 46.03 4.00
3608 3901 9.430399 AGCTATACAAGGGTTTATCTAGTGTAA 57.570 33.333 0.00 0.00 0.00 2.41
3624 3917 8.451908 AACCCTAGCATTTTTAGCTATACAAG 57.548 34.615 0.00 0.00 43.08 3.16
3642 3938 9.245962 CGACTAACAATGTAAGAATAACCCTAG 57.754 37.037 0.00 0.00 0.00 3.02
3645 3941 6.820152 ACCGACTAACAATGTAAGAATAACCC 59.180 38.462 0.00 0.00 0.00 4.11
3646 3942 7.201582 CCACCGACTAACAATGTAAGAATAACC 60.202 40.741 0.00 0.00 0.00 2.85
3691 3987 7.505923 AGGGATTAGTTTTCCAAATAGGCATAC 59.494 37.037 0.00 0.00 37.29 2.39
3732 4028 5.480422 ACAGTAGTCATCAACTCACCATACA 59.520 40.000 0.00 0.00 39.55 2.29
3743 4039 3.895041 TGTCAGACCACAGTAGTCATCAA 59.105 43.478 1.74 0.00 36.68 2.57
3770 4066 7.653713 TGAGAAAGTAGTCTGAATCAAACACTC 59.346 37.037 0.00 0.00 0.00 3.51
3782 4078 5.122512 TCCGTTTCTGAGAAAGTAGTCTG 57.877 43.478 8.06 0.00 0.00 3.51
3792 4088 3.401033 TGAAGCATTCCGTTTCTGAGA 57.599 42.857 0.00 0.00 46.93 3.27
3797 4093 2.927553 AGCATGAAGCATTCCGTTTC 57.072 45.000 0.00 0.00 46.93 2.78
3801 4097 0.383231 GGGAAGCATGAAGCATTCCG 59.617 55.000 0.00 0.00 46.93 4.30
3823 4119 0.469331 TTGAGACGGAGGGAGTGTGT 60.469 55.000 0.00 0.00 0.00 3.72
3824 4120 0.679505 TTTGAGACGGAGGGAGTGTG 59.320 55.000 0.00 0.00 0.00 3.82
3825 4121 1.420430 TTTTGAGACGGAGGGAGTGT 58.580 50.000 0.00 0.00 0.00 3.55
3826 4122 2.770164 ATTTTGAGACGGAGGGAGTG 57.230 50.000 0.00 0.00 0.00 3.51
3827 4123 6.555463 TTTATATTTTGAGACGGAGGGAGT 57.445 37.500 0.00 0.00 0.00 3.85
3828 4124 6.018994 CGTTTTATATTTTGAGACGGAGGGAG 60.019 42.308 0.00 0.00 0.00 4.30
3829 4125 5.813672 CGTTTTATATTTTGAGACGGAGGGA 59.186 40.000 0.00 0.00 0.00 4.20
3830 4126 5.503520 GCGTTTTATATTTTGAGACGGAGGG 60.504 44.000 0.00 0.00 0.00 4.30
3831 4127 5.293569 AGCGTTTTATATTTTGAGACGGAGG 59.706 40.000 0.00 0.00 0.00 4.30
3832 4128 6.345920 AGCGTTTTATATTTTGAGACGGAG 57.654 37.500 0.00 0.00 0.00 4.63
3833 4129 8.428186 AATAGCGTTTTATATTTTGAGACGGA 57.572 30.769 0.00 0.00 0.00 4.69
3834 4130 9.577003 GTAATAGCGTTTTATATTTTGAGACGG 57.423 33.333 0.00 0.00 0.00 4.79
3848 4144 9.772973 TGAGTATATTGGATGTAATAGCGTTTT 57.227 29.630 0.00 0.00 0.00 2.43
3849 4145 9.204570 GTGAGTATATTGGATGTAATAGCGTTT 57.795 33.333 0.00 0.00 0.00 3.60
3850 4146 8.364894 TGTGAGTATATTGGATGTAATAGCGTT 58.635 33.333 0.00 0.00 0.00 4.84
3851 4147 7.892609 TGTGAGTATATTGGATGTAATAGCGT 58.107 34.615 0.00 0.00 0.00 5.07
3852 4148 8.932945 ATGTGAGTATATTGGATGTAATAGCG 57.067 34.615 0.00 0.00 0.00 4.26
3869 4165 9.687210 GACGTTATTACATCCAATATGTGAGTA 57.313 33.333 0.00 0.00 33.76 2.59
3870 4166 8.421784 AGACGTTATTACATCCAATATGTGAGT 58.578 33.333 0.00 0.00 33.76 3.41
3871 4167 8.818141 AGACGTTATTACATCCAATATGTGAG 57.182 34.615 0.00 0.00 33.76 3.51
3880 4176 9.496873 CCCAAATATAAGACGTTATTACATCCA 57.503 33.333 0.00 0.00 31.04 3.41
3881 4177 9.715121 TCCCAAATATAAGACGTTATTACATCC 57.285 33.333 0.00 0.00 31.04 3.51
3884 4180 9.537192 CTGTCCCAAATATAAGACGTTATTACA 57.463 33.333 0.00 0.00 31.04 2.41
3885 4181 9.754382 TCTGTCCCAAATATAAGACGTTATTAC 57.246 33.333 0.00 0.00 31.04 1.89
3886 4182 9.976511 CTCTGTCCCAAATATAAGACGTTATTA 57.023 33.333 0.00 0.00 31.04 0.98
3887 4183 7.931948 CCTCTGTCCCAAATATAAGACGTTATT 59.068 37.037 0.00 0.00 31.04 1.40
3888 4184 7.442656 CCTCTGTCCCAAATATAAGACGTTAT 58.557 38.462 0.00 0.00 33.25 1.89
3889 4185 6.183360 CCCTCTGTCCCAAATATAAGACGTTA 60.183 42.308 0.00 0.00 31.75 3.18
3890 4186 5.396436 CCCTCTGTCCCAAATATAAGACGTT 60.396 44.000 0.00 0.00 31.75 3.99
3891 4187 4.101119 CCCTCTGTCCCAAATATAAGACGT 59.899 45.833 0.00 0.00 31.75 4.34
3892 4188 4.344102 TCCCTCTGTCCCAAATATAAGACG 59.656 45.833 0.00 0.00 31.75 4.18
3893 4189 5.367060 ACTCCCTCTGTCCCAAATATAAGAC 59.633 44.000 0.00 0.00 0.00 3.01
3894 4190 5.538877 ACTCCCTCTGTCCCAAATATAAGA 58.461 41.667 0.00 0.00 0.00 2.10
3895 4191 5.896073 ACTCCCTCTGTCCCAAATATAAG 57.104 43.478 0.00 0.00 0.00 1.73
3896 4192 7.079700 TGATACTCCCTCTGTCCCAAATATAA 58.920 38.462 0.00 0.00 0.00 0.98
3897 4193 6.630131 TGATACTCCCTCTGTCCCAAATATA 58.370 40.000 0.00 0.00 0.00 0.86
3898 4194 5.476983 TGATACTCCCTCTGTCCCAAATAT 58.523 41.667 0.00 0.00 0.00 1.28
3899 4195 4.890988 TGATACTCCCTCTGTCCCAAATA 58.109 43.478 0.00 0.00 0.00 1.40
3900 4196 3.736094 TGATACTCCCTCTGTCCCAAAT 58.264 45.455 0.00 0.00 0.00 2.32
3901 4197 3.199442 TGATACTCCCTCTGTCCCAAA 57.801 47.619 0.00 0.00 0.00 3.28
3902 4198 2.940514 TGATACTCCCTCTGTCCCAA 57.059 50.000 0.00 0.00 0.00 4.12
3903 4199 3.467483 AGTATGATACTCCCTCTGTCCCA 59.533 47.826 0.00 0.00 32.47 4.37
3904 4200 4.120946 AGTATGATACTCCCTCTGTCCC 57.879 50.000 0.00 0.00 32.47 4.46
3905 4201 6.722129 ACAATAGTATGATACTCCCTCTGTCC 59.278 42.308 8.63 0.00 40.14 4.02
3906 4202 7.768807 ACAATAGTATGATACTCCCTCTGTC 57.231 40.000 8.63 0.00 40.14 3.51
3907 4203 7.785028 TCAACAATAGTATGATACTCCCTCTGT 59.215 37.037 8.63 4.19 40.14 3.41
3908 4204 8.183104 TCAACAATAGTATGATACTCCCTCTG 57.817 38.462 8.63 3.44 40.14 3.35
3909 4205 8.811017 CATCAACAATAGTATGATACTCCCTCT 58.189 37.037 8.63 0.00 40.14 3.69
3910 4206 8.589338 ACATCAACAATAGTATGATACTCCCTC 58.411 37.037 8.63 0.00 40.14 4.30
3911 4207 8.497910 ACATCAACAATAGTATGATACTCCCT 57.502 34.615 8.63 0.00 40.14 4.20
3912 4208 9.209175 GAACATCAACAATAGTATGATACTCCC 57.791 37.037 8.63 0.00 40.14 4.30
3913 4209 9.988815 AGAACATCAACAATAGTATGATACTCC 57.011 33.333 8.63 0.00 40.14 3.85
3932 4228 6.449698 TGAAATGGCAAGAGAAAAGAACATC 58.550 36.000 0.00 0.00 0.00 3.06
3940 4236 3.157087 GGACCTGAAATGGCAAGAGAAA 58.843 45.455 0.00 0.00 0.00 2.52
3961 4257 2.079925 GCTGCCTAGTTTTCTCTGGTG 58.920 52.381 0.00 0.00 0.00 4.17
3964 4260 2.370281 TCGCTGCCTAGTTTTCTCTG 57.630 50.000 0.00 0.00 0.00 3.35
3981 4277 3.982701 TCAACAATTTTGCTGCAGATTCG 59.017 39.130 20.43 5.94 0.00 3.34
3999 4295 6.974048 AGTACGGTGGTTTTAATTTGTTCAAC 59.026 34.615 0.00 0.00 0.00 3.18
4000 4296 6.973474 CAGTACGGTGGTTTTAATTTGTTCAA 59.027 34.615 0.00 0.00 0.00 2.69
4050 4346 5.126061 ACCATGTTGAATGATAGCTGGAAAC 59.874 40.000 0.00 0.00 0.00 2.78
4104 4400 1.392710 CGGGGAGGCACTTATCGAGT 61.393 60.000 0.00 0.00 41.55 4.18
4107 4403 2.421739 CCGGGGAGGCACTTATCG 59.578 66.667 0.00 0.00 41.55 2.92
4146 4442 4.377839 TGAGCGTGAAAGAGGAGATAAG 57.622 45.455 0.00 0.00 0.00 1.73
4147 4443 5.344743 AATGAGCGTGAAAGAGGAGATAA 57.655 39.130 0.00 0.00 0.00 1.75
4163 4459 3.451141 TTTGTGGTGGTCAAAATGAGC 57.549 42.857 2.74 2.74 44.54 4.26
4164 4460 8.606040 AATTTATTTGTGGTGGTCAAAATGAG 57.394 30.769 0.00 0.00 38.11 2.90
4165 4461 8.970859 AAATTTATTTGTGGTGGTCAAAATGA 57.029 26.923 0.00 0.00 38.11 2.57
4171 4467 7.118496 ACAAGAAATTTATTTGTGGTGGTCA 57.882 32.000 15.81 0.00 34.04 4.02
4172 4468 8.138712 TGTACAAGAAATTTATTTGTGGTGGTC 58.861 33.333 21.76 10.99 36.52 4.02
4190 4486 8.902540 ACATCTTAGAACAAATGTGTACAAGA 57.097 30.769 0.00 8.52 36.80 3.02
4195 4491 8.946085 GGATTGACATCTTAGAACAAATGTGTA 58.054 33.333 0.00 0.00 36.80 2.90
4199 4495 9.865321 AAATGGATTGACATCTTAGAACAAATG 57.135 29.630 0.00 0.00 0.00 2.32
4221 4517 9.573166 TGGATGGAATGTCTATTACCTAAAATG 57.427 33.333 0.00 0.00 0.00 2.32
4252 4548 7.238305 TCATCATACTGGATTTCATATGGTCCT 59.762 37.037 17.69 6.85 0.00 3.85
4267 4563 4.261489 GCAAGCCATTCTTCATCATACTGG 60.261 45.833 0.00 0.00 31.27 4.00
4407 4708 7.994425 TTACTCCAGCTTTGTCATTTATTGA 57.006 32.000 0.00 0.00 0.00 2.57
4444 4745 4.680567 GTCAAGTTCTTCGTTCCTGTAGAC 59.319 45.833 0.00 0.00 0.00 2.59
4467 4769 1.399440 CACTGCCGGTCATCTTGAATG 59.601 52.381 1.90 0.00 0.00 2.67
4471 4773 1.746615 CCCACTGCCGGTCATCTTG 60.747 63.158 1.90 0.00 0.00 3.02
4596 4898 7.039011 TCACAGTGAAGACATGACTATTAAGGT 60.039 37.037 0.00 0.00 0.00 3.50
4598 4900 7.009999 GCTCACAGTGAAGACATGACTATTAAG 59.990 40.741 4.41 0.00 0.00 1.85
4646 4948 5.915857 TCAAGATCAAGAAACATTTCGACG 58.084 37.500 0.00 0.00 41.92 5.12
4676 4978 7.790823 TTGTGGTACTAAAGGAAAACTGTAC 57.209 36.000 0.00 0.00 0.00 2.90
4694 4996 6.716628 ACTGTGACATAAGATGAAATTGTGGT 59.283 34.615 0.00 0.00 0.00 4.16
4821 5124 4.440758 CACAAGAACCATTTAAAGCACACG 59.559 41.667 0.00 0.00 0.00 4.49
5025 5337 3.393089 AGTGCAAACTGACTAGGTCTG 57.607 47.619 0.00 3.63 37.49 3.51
5055 5389 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
5056 5390 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
5057 5391 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
5058 5392 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
5059 5393 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
5060 5394 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
5061 5395 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
5062 5396 4.378459 GCTTGAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
5063 5397 4.762251 AGCTTGAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
5064 5398 4.985538 AGCTTGAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
5065 5399 5.712152 AAGCTTGAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
5066 5400 7.440523 ACTAAGCTTGAGACACTTATTTTGG 57.559 36.000 9.86 0.00 0.00 3.28
5067 5401 8.988934 TGTACTAAGCTTGAGACACTTATTTTG 58.011 33.333 9.86 0.00 0.00 2.44
5068 5402 9.555727 TTGTACTAAGCTTGAGACACTTATTTT 57.444 29.630 9.86 0.00 0.00 1.82
5069 5403 9.726438 ATTGTACTAAGCTTGAGACACTTATTT 57.274 29.630 9.86 0.00 0.00 1.40
5070 5404 9.726438 AATTGTACTAAGCTTGAGACACTTATT 57.274 29.630 9.86 4.54 0.00 1.40
5071 5405 9.726438 AAATTGTACTAAGCTTGAGACACTTAT 57.274 29.630 9.86 0.00 0.00 1.73
5072 5406 9.555727 AAAATTGTACTAAGCTTGAGACACTTA 57.444 29.630 9.86 0.00 0.00 2.24
5073 5407 8.451908 AAAATTGTACTAAGCTTGAGACACTT 57.548 30.769 9.86 7.57 0.00 3.16
5074 5408 8.989980 GTAAAATTGTACTAAGCTTGAGACACT 58.010 33.333 9.86 1.62 0.00 3.55
5075 5409 8.770828 TGTAAAATTGTACTAAGCTTGAGACAC 58.229 33.333 9.86 7.18 0.00 3.67
5076 5410 8.770828 GTGTAAAATTGTACTAAGCTTGAGACA 58.229 33.333 9.86 7.12 0.00 3.41
5077 5411 8.989980 AGTGTAAAATTGTACTAAGCTTGAGAC 58.010 33.333 9.86 4.39 0.00 3.36
5112 5446 9.607988 TCTCAAAATAAGTGTCTCAACTTTGTA 57.392 29.630 0.00 0.00 40.77 2.41
5113 5447 8.398665 GTCTCAAAATAAGTGTCTCAACTTTGT 58.601 33.333 0.00 0.00 40.77 2.83
5114 5448 7.584123 CGTCTCAAAATAAGTGTCTCAACTTTG 59.416 37.037 0.00 0.00 40.77 2.77
5115 5449 7.254795 CCGTCTCAAAATAAGTGTCTCAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
5116 5450 6.202954 CCGTCTCAAAATAAGTGTCTCAACTT 59.797 38.462 0.00 0.00 42.89 2.66
5117 5451 5.696724 CCGTCTCAAAATAAGTGTCTCAACT 59.303 40.000 0.00 0.00 0.00 3.16
5118 5452 5.694910 TCCGTCTCAAAATAAGTGTCTCAAC 59.305 40.000 0.00 0.00 0.00 3.18
5119 5453 5.849510 TCCGTCTCAAAATAAGTGTCTCAA 58.150 37.500 0.00 0.00 0.00 3.02
5120 5454 5.462530 TCCGTCTCAAAATAAGTGTCTCA 57.537 39.130 0.00 0.00 0.00 3.27
5121 5455 4.865365 CCTCCGTCTCAAAATAAGTGTCTC 59.135 45.833 0.00 0.00 0.00 3.36
5122 5456 4.322801 CCCTCCGTCTCAAAATAAGTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
5123 5457 3.933332 CCCTCCGTCTCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
5124 5458 3.581332 TCCCTCCGTCTCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
5125 5459 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
5126 5460 3.838903 ACTCCCTCCGTCTCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
5127 5461 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
5128 5462 5.021458 ACTACTCCCTCCGTCTCAAAATAA 58.979 41.667 0.00 0.00 0.00 1.40
5129 5463 4.607239 ACTACTCCCTCCGTCTCAAAATA 58.393 43.478 0.00 0.00 0.00 1.40
5130 5464 3.442076 ACTACTCCCTCCGTCTCAAAAT 58.558 45.455 0.00 0.00 0.00 1.82
5131 5465 2.885616 ACTACTCCCTCCGTCTCAAAA 58.114 47.619 0.00 0.00 0.00 2.44
5132 5466 2.599408 ACTACTCCCTCCGTCTCAAA 57.401 50.000 0.00 0.00 0.00 2.69
5133 5467 2.575279 AGTACTACTCCCTCCGTCTCAA 59.425 50.000 0.00 0.00 0.00 3.02
5134 5468 2.194859 AGTACTACTCCCTCCGTCTCA 58.805 52.381 0.00 0.00 0.00 3.27
5135 5469 3.280197 AAGTACTACTCCCTCCGTCTC 57.720 52.381 0.00 0.00 0.00 3.36
5136 5470 3.354467 CAAAGTACTACTCCCTCCGTCT 58.646 50.000 0.00 0.00 0.00 4.18
5137 5471 2.426381 CCAAAGTACTACTCCCTCCGTC 59.574 54.545 0.00 0.00 0.00 4.79
5138 5472 2.225217 ACCAAAGTACTACTCCCTCCGT 60.225 50.000 0.00 0.00 0.00 4.69
5139 5473 2.454538 ACCAAAGTACTACTCCCTCCG 58.545 52.381 0.00 0.00 0.00 4.63
5140 5474 4.904895 AAACCAAAGTACTACTCCCTCC 57.095 45.455 0.00 0.00 0.00 4.30
5141 5475 5.405797 CGTAAACCAAAGTACTACTCCCTC 58.594 45.833 0.00 0.00 0.00 4.30
5142 5476 4.322273 GCGTAAACCAAAGTACTACTCCCT 60.322 45.833 0.00 0.00 0.00 4.20
5143 5477 3.928992 GCGTAAACCAAAGTACTACTCCC 59.071 47.826 0.00 0.00 0.00 4.30
5144 5478 4.814147 AGCGTAAACCAAAGTACTACTCC 58.186 43.478 0.00 0.00 0.00 3.85
5145 5479 5.344396 GTGAGCGTAAACCAAAGTACTACTC 59.656 44.000 0.00 0.00 0.00 2.59
5146 5480 5.010415 AGTGAGCGTAAACCAAAGTACTACT 59.990 40.000 0.00 0.00 0.00 2.57
5147 5481 5.225642 AGTGAGCGTAAACCAAAGTACTAC 58.774 41.667 0.00 0.00 0.00 2.73
5148 5482 5.009911 TGAGTGAGCGTAAACCAAAGTACTA 59.990 40.000 0.00 0.00 0.00 1.82
5149 5483 4.202182 TGAGTGAGCGTAAACCAAAGTACT 60.202 41.667 0.00 0.00 0.00 2.73
5303 5638 2.085320 AGCTCTATGTCGTCGTTGTCT 58.915 47.619 0.00 0.00 0.00 3.41
5350 5685 3.777106 AAGTGCTTCACTCCTCATCAA 57.223 42.857 0.00 0.00 44.62 2.57
5397 5791 1.745890 GGCAACAAAACCCTGGACC 59.254 57.895 0.00 0.00 0.00 4.46
5449 5845 7.338449 ACAAGTTAGTTTTCCTTCTGCAGTTAA 59.662 33.333 14.67 0.00 0.00 2.01
5522 5918 6.485830 TTCTTGTGCTAGCATATAACTCCT 57.514 37.500 22.51 0.00 0.00 3.69
5670 6074 7.451877 CCAAAGAACTAGCTATAGACAGGGATA 59.548 40.741 3.21 0.00 32.93 2.59
5680 6084 7.783119 TGGAGTATCACCAAAGAACTAGCTATA 59.217 37.037 0.00 0.00 36.25 1.31
5805 6209 0.035881 CAGACCTCCAGAAGCTGCAA 59.964 55.000 1.02 0.00 0.00 4.08
5808 6212 0.673022 GTGCAGACCTCCAGAAGCTG 60.673 60.000 0.00 0.00 0.00 4.24
5821 6225 2.754552 GTTTGGGCATATTCAGTGCAGA 59.245 45.455 0.00 0.00 44.25 4.26
5843 6247 5.047306 AGTTTGTCCAACATCGTCTGAGATA 60.047 40.000 0.00 0.00 37.93 1.98
5869 6273 2.109128 TGGGGTAGCACCAATCAAAGAA 59.891 45.455 7.49 0.00 41.02 2.52
5874 6278 1.004277 GACTTGGGGTAGCACCAATCA 59.996 52.381 13.14 1.13 46.15 2.57
5875 6279 1.282157 AGACTTGGGGTAGCACCAATC 59.718 52.381 13.14 12.35 46.15 2.67
5892 6296 9.114952 TCTGGAATGATGATATACGAGATAGAC 57.885 37.037 0.00 0.00 0.00 2.59
5994 6399 3.626930 TGAGTGTTGCCAACTAAAAGGT 58.373 40.909 9.30 0.00 0.00 3.50
6030 6436 2.654912 GACTGTTGTTCGACCCGCG 61.655 63.158 0.00 0.00 42.69 6.46
6045 6451 4.439253 AAAAGGCAAGTTCTACAGGACT 57.561 40.909 0.00 0.00 0.00 3.85
6155 6561 4.411869 TGCAGGAGAATGGTGGTATTGATA 59.588 41.667 0.00 0.00 0.00 2.15
6165 6571 1.005097 TCAATGCTGCAGGAGAATGGT 59.995 47.619 17.12 0.00 0.00 3.55
6170 6576 1.300963 GGGTCAATGCTGCAGGAGA 59.699 57.895 17.12 4.24 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.