Multiple sequence alignment - TraesCS4D01G055300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G055300 chr4D 100.000 7064 0 0 1 7064 30498780 30505843 0.000000e+00 13045.0
1 TraesCS4D01G055300 chr4D 87.084 1231 136 10 4660 5884 30509367 30510580 0.000000e+00 1371.0
2 TraesCS4D01G055300 chr4D 80.284 776 106 29 4695 5431 30421288 30422055 6.230000e-150 542.0
3 TraesCS4D01G055300 chr4D 87.432 366 46 0 5538 5903 30422138 30422503 8.470000e-114 422.0
4 TraesCS4D01G055300 chr4D 85.352 355 40 9 4260 4610 30508377 30508723 2.420000e-94 357.0
5 TraesCS4D01G055300 chr4D 84.099 283 37 5 3308 3584 30507018 30507298 4.200000e-67 267.0
6 TraesCS4D01G055300 chr4D 80.065 306 36 15 6341 6629 30500106 30500403 3.340000e-48 204.0
7 TraesCS4D01G055300 chr4D 80.065 306 36 15 1327 1624 30505120 30505408 3.340000e-48 204.0
8 TraesCS4D01G055300 chr4D 94.737 57 3 0 5985 6041 30422530 30422586 9.760000e-14 89.8
9 TraesCS4D01G055300 chr4A 88.482 4836 288 90 2399 7064 572545199 572540463 0.000000e+00 5596.0
10 TraesCS4D01G055300 chr4A 87.540 1244 116 17 4660 5884 572536361 572535138 0.000000e+00 1402.0
11 TraesCS4D01G055300 chr4A 81.853 1047 89 51 876 1898 572548251 572547282 0.000000e+00 787.0
12 TraesCS4D01G055300 chr4A 88.800 500 45 6 1 498 135613051 135612561 2.820000e-168 603.0
13 TraesCS4D01G055300 chr4A 81.021 764 110 22 4695 5431 572551105 572550350 6.150000e-160 575.0
14 TraesCS4D01G055300 chr4A 85.880 517 34 12 1923 2411 572546964 572546459 1.360000e-141 514.0
15 TraesCS4D01G055300 chr4A 84.479 509 64 9 5541 6041 572550268 572549767 8.240000e-134 488.0
16 TraesCS4D01G055300 chr4A 81.034 580 74 22 3024 3584 572540423 572539861 5.060000e-116 429.0
17 TraesCS4D01G055300 chr4A 88.034 351 32 6 534 876 135612562 135612214 2.370000e-109 407.0
18 TraesCS4D01G055300 chr4A 85.311 354 38 9 4260 4610 572537349 572537007 3.130000e-93 353.0
19 TraesCS4D01G055300 chr4A 85.915 284 26 7 3579 3852 572539830 572539551 2.490000e-74 291.0
20 TraesCS4D01G055300 chr4A 79.592 294 41 10 6350 6632 572547820 572547535 7.230000e-45 193.0
21 TraesCS4D01G055300 chr4A 95.238 42 2 0 4621 4662 572536695 572536654 4.570000e-07 67.6
22 TraesCS4D01G055300 chr4B 87.763 2190 169 40 2969 5109 43756110 43758249 0.000000e+00 2468.0
23 TraesCS4D01G055300 chr4B 91.615 1121 71 15 5142 6243 43758323 43759439 0.000000e+00 1528.0
24 TraesCS4D01G055300 chr4B 88.636 836 87 8 4660 5491 43766690 43767521 0.000000e+00 1011.0
25 TraesCS4D01G055300 chr4B 86.441 885 96 14 9 880 139530150 139531023 0.000000e+00 948.0
26 TraesCS4D01G055300 chr4B 84.839 930 97 20 2046 2966 43755183 43756077 0.000000e+00 896.0
27 TraesCS4D01G055300 chr4B 86.675 833 40 31 6289 7064 43759437 43760255 0.000000e+00 857.0
28 TraesCS4D01G055300 chr4B 81.404 769 110 23 4687 5430 43751611 43752371 1.310000e-166 597.0
29 TraesCS4D01G055300 chr4B 80.846 804 68 40 1280 2047 43754353 43755106 2.880000e-153 553.0
30 TraesCS4D01G055300 chr4B 83.463 514 72 8 5535 6041 43752458 43752965 3.860000e-127 466.0
31 TraesCS4D01G055300 chr4B 89.167 360 37 1 5526 5883 43767658 43768017 1.400000e-121 448.0
32 TraesCS4D01G055300 chr4B 88.796 357 29 4 534 879 89408438 89408082 1.820000e-115 427.0
33 TraesCS4D01G055300 chr4B 84.225 355 39 12 4260 4610 43765722 43766063 5.280000e-86 329.0
34 TraesCS4D01G055300 chr4B 85.461 282 39 2 6341 6621 43754407 43754687 6.930000e-75 292.0
35 TraesCS4D01G055300 chr4B 80.729 384 48 15 1327 1696 43759489 43759860 6.980000e-70 276.0
36 TraesCS4D01G055300 chr4B 93.525 139 5 1 961 1099 43754107 43754241 3.340000e-48 204.0
37 TraesCS4D01G055300 chr4B 90.840 131 12 0 3399 3529 43760446 43760576 7.280000e-40 176.0
38 TraesCS4D01G055300 chr4B 94.444 54 3 0 3531 3584 43762352 43762405 4.540000e-12 84.2
39 TraesCS4D01G055300 chr7B 88.563 1670 135 24 2389 4046 104262685 104261060 0.000000e+00 1975.0
40 TraesCS4D01G055300 chr7B 91.480 1162 69 14 4262 5402 104261044 104259892 0.000000e+00 1570.0
41 TraesCS4D01G055300 chr7B 88.735 648 55 11 5398 6031 104259236 104258593 0.000000e+00 776.0
42 TraesCS4D01G055300 chr7B 79.327 416 43 17 1915 2308 104268758 104268364 1.180000e-62 252.0
43 TraesCS4D01G055300 chr7B 83.333 174 20 5 712 876 708484708 708484881 1.230000e-32 152.0
44 TraesCS4D01G055300 chr7B 87.500 96 12 0 2296 2391 104266553 104266458 2.080000e-20 111.0
45 TraesCS4D01G055300 chr7B 86.765 68 7 1 6992 7059 498649501 498649436 2.730000e-09 75.0
46 TraesCS4D01G055300 chr5D 89.922 774 66 10 1 766 443945062 443944293 0.000000e+00 987.0
47 TraesCS4D01G055300 chr5D 93.151 219 14 1 6714 6932 204862981 204862764 3.180000e-83 320.0
48 TraesCS4D01G055300 chr6A 87.941 539 58 2 11 549 596469596 596469065 4.650000e-176 628.0
49 TraesCS4D01G055300 chr6A 90.343 321 20 6 548 860 596432864 596432547 1.830000e-110 411.0
50 TraesCS4D01G055300 chr7D 89.474 494 41 5 6 498 26824674 26825157 1.300000e-171 614.0
51 TraesCS4D01G055300 chr7D 89.841 315 24 3 534 841 26825156 26825469 1.430000e-106 398.0
52 TraesCS4D01G055300 chr7D 88.710 62 5 1 6992 7053 474539405 474539346 2.730000e-09 75.0
53 TraesCS4D01G055300 chr2D 90.598 351 25 3 534 876 634301207 634301557 6.460000e-125 459.0
54 TraesCS4D01G055300 chr5B 90.057 352 25 6 534 876 198025788 198026138 1.400000e-121 448.0
55 TraesCS4D01G055300 chr5B 82.766 499 30 18 1 498 198025346 198025789 1.850000e-105 394.0
56 TraesCS4D01G055300 chr5B 93.607 219 13 1 6714 6932 207588511 207588728 6.830000e-85 326.0
57 TraesCS4D01G055300 chr1A 89.404 302 24 3 3 303 345297989 345298283 2.410000e-99 374.0
58 TraesCS4D01G055300 chr1A 91.078 269 20 1 534 798 345298953 345299221 1.870000e-95 361.0
59 TraesCS4D01G055300 chr7A 87.742 310 24 8 2 311 77033241 77033536 4.050000e-92 350.0
60 TraesCS4D01G055300 chr7A 87.460 311 25 8 1 311 689389983 689389687 5.250000e-91 346.0
61 TraesCS4D01G055300 chr7A 84.706 85 11 1 6980 7064 8650453 8650535 4.540000e-12 84.2
62 TraesCS4D01G055300 chr7A 87.719 57 5 1 6997 7053 10886164 10886218 1.640000e-06 65.8
63 TraesCS4D01G055300 chr1B 89.085 284 22 6 4201 4480 26951120 26951398 1.890000e-90 344.0
64 TraesCS4D01G055300 chr5A 93.151 219 14 1 6714 6932 244429994 244429777 3.180000e-83 320.0
65 TraesCS4D01G055300 chr5A 93.056 72 3 1 6982 7053 118765361 118765430 3.490000e-18 104.0
66 TraesCS4D01G055300 chr6D 84.716 229 26 5 656 876 308788471 308788244 3.320000e-53 220.0
67 TraesCS4D01G055300 chr6D 82.545 275 22 9 190 464 308788724 308788476 1.190000e-52 219.0
68 TraesCS4D01G055300 chr2B 87.838 74 7 1 6980 7053 162504805 162504734 1.260000e-12 86.1
69 TraesCS4D01G055300 chr2B 94.444 36 2 0 3194 3229 305317529 305317564 1.000000e-03 56.5
70 TraesCS4D01G055300 chr6B 89.796 49 5 0 7005 7053 620871768 620871720 5.920000e-06 63.9
71 TraesCS4D01G055300 chr2A 94.444 36 2 0 3194 3229 244305393 244305428 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G055300 chr4D 30498780 30505843 7063 False 13045.000000 13045 100.000000 1 7064 1 chr4D.!!$F1 7063
1 TraesCS4D01G055300 chr4D 30505120 30510580 5460 False 549.750000 1371 84.150000 1327 5884 4 chr4D.!!$F4 4557
2 TraesCS4D01G055300 chr4D 30421288 30422586 1298 False 351.266667 542 87.484333 4695 6041 3 chr4D.!!$F3 1346
3 TraesCS4D01G055300 chr4A 572535138 572551105 15967 True 972.327273 5596 85.122273 876 7064 11 chr4A.!!$R2 6188
4 TraesCS4D01G055300 chr4A 135612214 135613051 837 True 505.000000 603 88.417000 1 876 2 chr4A.!!$R1 875
5 TraesCS4D01G055300 chr4B 139530150 139531023 873 False 948.000000 948 86.441000 9 880 1 chr4B.!!$F1 871
6 TraesCS4D01G055300 chr4B 43751611 43768017 16406 False 679.013333 2468 86.908800 961 7064 15 chr4B.!!$F2 6103
7 TraesCS4D01G055300 chr7B 104258593 104268758 10165 True 936.800000 1975 87.121000 1915 6031 5 chr7B.!!$R2 4116
8 TraesCS4D01G055300 chr5D 443944293 443945062 769 True 987.000000 987 89.922000 1 766 1 chr5D.!!$R2 765
9 TraesCS4D01G055300 chr6A 596469065 596469596 531 True 628.000000 628 87.941000 11 549 1 chr6A.!!$R2 538
10 TraesCS4D01G055300 chr7D 26824674 26825469 795 False 506.000000 614 89.657500 6 841 2 chr7D.!!$F1 835
11 TraesCS4D01G055300 chr5B 198025346 198026138 792 False 421.000000 448 86.411500 1 876 2 chr5B.!!$F2 875
12 TraesCS4D01G055300 chr1A 345297989 345299221 1232 False 367.500000 374 90.241000 3 798 2 chr1A.!!$F1 795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
929 1484 0.106419 TGCGATATTTTGGGGGTCCC 60.106 55.000 0.00 0.0 45.71 4.46 F
1237 3258 0.106217 CTCCCTCTGTCTCCCCTCTC 60.106 65.000 0.00 0.0 0.00 3.20 F
1990 4357 0.109319 GTGCCAAATTACAGCCACCG 60.109 55.000 0.00 0.0 0.00 4.94 F
1992 4359 0.170339 GCCAAATTACAGCCACCGTC 59.830 55.000 0.00 0.0 0.00 4.79 F
2772 10821 1.135460 GTACAGTGACTAGGACCACGC 60.135 57.143 0.00 0.0 38.26 5.34 F
3929 13236 1.135199 CATGGTGGCTGCATTTGTCTC 60.135 52.381 0.50 0.0 0.00 3.36 F
4547 14050 1.946768 CAGGAGCTCTCTTAGGAGTCG 59.053 57.143 14.64 0.0 40.29 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1977 4341 0.035739 AACCGACGGTGGCTGTAATT 59.964 50.000 22.53 0.00 35.34 1.40 R
2126 4571 1.135083 CAAGCCTATTGACGTCGTCCT 60.135 52.381 22.05 12.12 0.00 3.85 R
3628 12625 1.053264 TGGCCAACCCTTGTGCAAAT 61.053 50.000 0.61 0.00 33.59 2.32 R
3745 12744 3.134081 TCTGCTCAGCATCATCTGAATCA 59.866 43.478 0.00 0.00 41.99 2.57 R
4212 13547 1.305201 TCCTTTGAGCGGAACAACAC 58.695 50.000 0.00 0.00 0.00 3.32 R
5237 15430 0.035881 CTTCAGGCAGGCTGAGAACA 59.964 55.000 24.60 10.89 31.98 3.18 R
6247 17175 0.267356 ATGGAAGAGAGGGAGGGAGG 59.733 60.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
134 136 3.367743 CCCGACGACGAAGGACCA 61.368 66.667 9.28 0.00 42.66 4.02
142 148 4.697756 CGAAGGACCAGGGCGCAA 62.698 66.667 10.83 0.00 0.00 4.85
251 257 0.892755 AAATGGAGTGAGACGGCGTA 59.107 50.000 14.74 0.00 0.00 4.42
405 891 4.719369 GGACGAAGCGACCGCAGT 62.719 66.667 16.97 12.61 44.88 4.40
444 930 4.115199 GGGCCGAAGATGCAGGGT 62.115 66.667 0.00 0.00 0.00 4.34
496 983 3.157217 ATGCTCGAGATGACCGGCC 62.157 63.158 18.75 0.00 0.00 6.13
497 984 4.933064 GCTCGAGATGACCGGCCG 62.933 72.222 21.04 21.04 0.00 6.13
498 985 4.271816 CTCGAGATGACCGGCCGG 62.272 72.222 42.17 42.17 42.03 6.13
798 1348 2.035321 ACACGGCCGAAAACATTTTCAT 59.965 40.909 35.90 0.00 45.15 2.57
818 1371 1.793258 TCCGTCAAAATTTACGCCGA 58.207 45.000 7.79 0.00 37.78 5.54
876 1431 1.833630 TCAATGGTCGGAGATGCTCTT 59.166 47.619 0.00 0.00 40.67 2.85
880 1435 3.292492 TGGTCGGAGATGCTCTTAGTA 57.708 47.619 0.00 0.00 40.67 1.82
881 1436 2.950309 TGGTCGGAGATGCTCTTAGTAC 59.050 50.000 0.00 0.00 40.67 2.73
882 1437 2.293955 GGTCGGAGATGCTCTTAGTACC 59.706 54.545 0.00 0.00 40.67 3.34
883 1438 2.031857 GTCGGAGATGCTCTTAGTACCG 60.032 54.545 0.00 0.00 40.67 4.02
885 1440 3.136763 CGGAGATGCTCTTAGTACCGTA 58.863 50.000 0.00 0.00 35.40 4.02
886 1441 3.752222 CGGAGATGCTCTTAGTACCGTAT 59.248 47.826 0.00 0.00 35.40 3.06
888 1443 4.142859 GGAGATGCTCTTAGTACCGTATCG 60.143 50.000 0.00 0.00 0.00 2.92
890 1445 3.957671 TGCTCTTAGTACCGTATCGTG 57.042 47.619 0.00 0.00 0.00 4.35
891 1446 2.615447 TGCTCTTAGTACCGTATCGTGG 59.385 50.000 0.00 0.00 0.00 4.94
892 1447 2.874701 GCTCTTAGTACCGTATCGTGGA 59.125 50.000 0.00 0.00 0.00 4.02
893 1448 3.303659 GCTCTTAGTACCGTATCGTGGAC 60.304 52.174 0.00 0.00 0.00 4.02
895 1450 3.873361 TCTTAGTACCGTATCGTGGACTG 59.127 47.826 0.00 0.00 0.00 3.51
896 1451 0.737219 AGTACCGTATCGTGGACTGC 59.263 55.000 0.00 0.00 0.00 4.40
897 1452 0.248784 GTACCGTATCGTGGACTGCC 60.249 60.000 0.00 0.00 0.00 4.85
899 1454 2.767445 CCGTATCGTGGACTGCCGA 61.767 63.158 0.00 0.00 36.79 5.54
901 1456 1.226888 GTATCGTGGACTGCCGACC 60.227 63.158 0.00 0.00 35.69 4.79
903 1458 0.968901 TATCGTGGACTGCCGACCTT 60.969 55.000 0.00 0.00 35.69 3.50
904 1459 2.227089 ATCGTGGACTGCCGACCTTC 62.227 60.000 0.00 0.00 35.69 3.46
905 1460 2.047179 GTGGACTGCCGACCTTCC 60.047 66.667 0.00 0.00 36.79 3.46
908 1463 3.003763 GACTGCCGACCTTCCCCT 61.004 66.667 0.00 0.00 0.00 4.79
909 1464 3.316573 GACTGCCGACCTTCCCCTG 62.317 68.421 0.00 0.00 0.00 4.45
910 1465 3.322466 CTGCCGACCTTCCCCTGT 61.322 66.667 0.00 0.00 0.00 4.00
911 1466 3.612247 CTGCCGACCTTCCCCTGTG 62.612 68.421 0.00 0.00 0.00 3.66
913 1468 4.760047 CCGACCTTCCCCTGTGCG 62.760 72.222 0.00 0.00 0.00 5.34
916 1471 1.672854 CGACCTTCCCCTGTGCGATA 61.673 60.000 0.00 0.00 0.00 2.92
919 1474 1.564348 ACCTTCCCCTGTGCGATATTT 59.436 47.619 0.00 0.00 0.00 1.40
921 1476 2.358898 CCTTCCCCTGTGCGATATTTTG 59.641 50.000 0.00 0.00 0.00 2.44
922 1477 2.051334 TCCCCTGTGCGATATTTTGG 57.949 50.000 0.00 0.00 0.00 3.28
923 1478 1.032014 CCCCTGTGCGATATTTTGGG 58.968 55.000 0.00 0.00 0.00 4.12
924 1479 1.032014 CCCTGTGCGATATTTTGGGG 58.968 55.000 0.00 0.00 0.00 4.96
925 1480 1.032014 CCTGTGCGATATTTTGGGGG 58.968 55.000 0.00 0.00 0.00 5.40
926 1481 1.684869 CCTGTGCGATATTTTGGGGGT 60.685 52.381 0.00 0.00 0.00 4.95
928 1483 1.029681 GTGCGATATTTTGGGGGTCC 58.970 55.000 0.00 0.00 0.00 4.46
929 1484 0.106419 TGCGATATTTTGGGGGTCCC 60.106 55.000 0.00 0.00 45.71 4.46
946 1501 3.103911 CCGTGCCGAGTCGTTCAC 61.104 66.667 19.22 19.22 0.00 3.18
947 1502 2.354188 CGTGCCGAGTCGTTCACA 60.354 61.111 24.89 11.59 31.53 3.58
951 1506 2.027073 GCCGAGTCGTTCACATGCA 61.027 57.895 12.31 0.00 0.00 3.96
952 1507 1.361668 GCCGAGTCGTTCACATGCAT 61.362 55.000 12.31 0.00 0.00 3.96
953 1508 0.371301 CCGAGTCGTTCACATGCATG 59.629 55.000 25.09 25.09 0.00 4.06
954 1509 0.247419 CGAGTCGTTCACATGCATGC 60.247 55.000 26.53 11.82 0.00 4.06
955 1510 0.798159 GAGTCGTTCACATGCATGCA 59.202 50.000 26.53 25.04 0.00 3.96
956 1511 0.800631 AGTCGTTCACATGCATGCAG 59.199 50.000 26.69 18.75 0.00 4.41
957 1512 0.518636 GTCGTTCACATGCATGCAGT 59.481 50.000 26.69 19.79 0.00 4.40
958 1513 1.731709 GTCGTTCACATGCATGCAGTA 59.268 47.619 26.69 10.50 0.00 2.74
959 1514 1.731709 TCGTTCACATGCATGCAGTAC 59.268 47.619 26.69 19.74 0.00 2.73
960 1515 1.527591 CGTTCACATGCATGCAGTACG 60.528 52.381 26.69 25.92 0.00 3.67
961 1516 1.085893 TTCACATGCATGCAGTACGG 58.914 50.000 26.69 14.37 0.00 4.02
962 1517 0.744057 TCACATGCATGCAGTACGGG 60.744 55.000 26.69 14.99 0.00 5.28
963 1518 2.114670 ACATGCATGCAGTACGGGC 61.115 57.895 26.69 5.71 0.00 6.13
964 1519 2.516930 ATGCATGCAGTACGGGCC 60.517 61.111 26.69 0.00 0.00 5.80
994 3010 1.262417 TCTGGTGCGATGTCCACTAA 58.738 50.000 0.00 0.00 33.78 2.24
995 3011 1.204704 TCTGGTGCGATGTCCACTAAG 59.795 52.381 0.00 0.00 33.78 2.18
996 3012 0.973632 TGGTGCGATGTCCACTAAGT 59.026 50.000 0.00 0.00 33.78 2.24
997 3013 2.165641 CTGGTGCGATGTCCACTAAGTA 59.834 50.000 0.00 0.00 33.78 2.24
1009 3025 7.224522 TGTCCACTAAGTACTAGGAAAGTTC 57.775 40.000 0.00 0.00 39.80 3.01
1045 3061 1.546773 CCCACCCGTCAGAATCCAAAA 60.547 52.381 0.00 0.00 0.00 2.44
1106 3122 2.358737 GTCCACAAGCTGACCCCG 60.359 66.667 0.00 0.00 0.00 5.73
1150 3167 0.887247 CCCCATCGCAACATCAACAA 59.113 50.000 0.00 0.00 0.00 2.83
1155 3172 3.188254 CCATCGCAACATCAACAACAGTA 59.812 43.478 0.00 0.00 0.00 2.74
1169 3186 3.055819 ACAACAGTAGCGTGAGATTCCAT 60.056 43.478 0.00 0.00 0.00 3.41
1170 3187 3.170791 ACAGTAGCGTGAGATTCCATG 57.829 47.619 0.00 0.00 0.00 3.66
1229 3250 1.001503 CCAGCTCCTCCCTCTGTCT 59.998 63.158 0.00 0.00 0.00 3.41
1231 3252 1.042559 CAGCTCCTCCCTCTGTCTCC 61.043 65.000 0.00 0.00 0.00 3.71
1232 3253 1.760480 GCTCCTCCCTCTGTCTCCC 60.760 68.421 0.00 0.00 0.00 4.30
1233 3254 1.075600 CTCCTCCCTCTGTCTCCCC 60.076 68.421 0.00 0.00 0.00 4.81
1234 3255 1.547755 TCCTCCCTCTGTCTCCCCT 60.548 63.158 0.00 0.00 0.00 4.79
1235 3256 1.075600 CCTCCCTCTGTCTCCCCTC 60.076 68.421 0.00 0.00 0.00 4.30
1236 3257 1.589399 CCTCCCTCTGTCTCCCCTCT 61.589 65.000 0.00 0.00 0.00 3.69
1237 3258 0.106217 CTCCCTCTGTCTCCCCTCTC 60.106 65.000 0.00 0.00 0.00 3.20
1238 3259 1.075600 CCCTCTGTCTCCCCTCTCC 60.076 68.421 0.00 0.00 0.00 3.71
1239 3260 1.075600 CCTCTGTCTCCCCTCTCCC 60.076 68.421 0.00 0.00 0.00 4.30
1242 3263 2.874245 TGTCTCCCCTCTCCCCCA 60.874 66.667 0.00 0.00 0.00 4.96
1245 3266 3.700350 CTCCCCTCTCCCCCACCT 61.700 72.222 0.00 0.00 0.00 4.00
1252 3273 0.908198 CTCTCCCCCACCTTCTCTTG 59.092 60.000 0.00 0.00 0.00 3.02
1258 3279 2.173569 CCCCCACCTTCTCTTGGATTAG 59.826 54.545 0.00 0.00 34.46 1.73
1262 3283 4.141824 CCCACCTTCTCTTGGATTAGTCTC 60.142 50.000 0.00 0.00 34.46 3.36
1271 3292 1.370657 GATTAGTCTCGCGCTCCCG 60.371 63.158 5.56 0.00 37.57 5.14
1291 3331 2.165437 CGAGAGGTCAGGAGGAGAAAAG 59.835 54.545 0.00 0.00 0.00 2.27
1292 3332 3.169908 GAGAGGTCAGGAGGAGAAAAGT 58.830 50.000 0.00 0.00 0.00 2.66
1293 3333 3.169908 AGAGGTCAGGAGGAGAAAAGTC 58.830 50.000 0.00 0.00 0.00 3.01
1294 3334 2.900546 GAGGTCAGGAGGAGAAAAGTCA 59.099 50.000 0.00 0.00 0.00 3.41
1298 3338 3.070302 GTCAGGAGGAGAAAAGTCACAGT 59.930 47.826 0.00 0.00 0.00 3.55
1311 3351 0.598562 TCACAGTCCAACTCTCTCGC 59.401 55.000 0.00 0.00 0.00 5.03
1443 3499 3.555967 AGGTCGATCCTGCCATCC 58.444 61.111 5.85 0.00 46.19 3.51
1444 3500 1.074926 AGGTCGATCCTGCCATCCT 60.075 57.895 5.85 0.00 46.19 3.24
1445 3501 1.070445 GGTCGATCCTGCCATCCTG 59.930 63.158 0.00 0.00 0.00 3.86
1484 3540 8.876275 TTCTTGATTCAGTTTTCATTTCTTGG 57.124 30.769 0.00 0.00 0.00 3.61
1659 3715 7.120873 CAGGAATCTGTCATTCTCTGTTTCATT 59.879 37.037 0.00 0.00 36.30 2.57
1664 3720 8.099364 TCTGTCATTCTCTGTTTCATTTAACC 57.901 34.615 0.00 0.00 0.00 2.85
1738 3807 1.933853 CCGTAGCACCAACAATAGAGC 59.066 52.381 0.00 0.00 0.00 4.09
1739 3808 2.418746 CCGTAGCACCAACAATAGAGCT 60.419 50.000 0.00 0.00 36.20 4.09
1745 3814 5.316987 AGCACCAACAATAGAGCTTTAAGT 58.683 37.500 0.00 0.00 0.00 2.24
1746 3815 6.472887 AGCACCAACAATAGAGCTTTAAGTA 58.527 36.000 0.00 0.00 0.00 2.24
1752 3821 9.220767 CCAACAATAGAGCTTTAAGTATATCCC 57.779 37.037 0.00 0.00 0.00 3.85
1775 3844 6.238759 CCCGAAATCTTTAGCCTATTTCCTTG 60.239 42.308 0.00 0.00 36.64 3.61
1782 3851 1.918957 AGCCTATTTCCTTGTGAGCCT 59.081 47.619 0.00 0.00 0.00 4.58
1783 3852 2.092699 AGCCTATTTCCTTGTGAGCCTC 60.093 50.000 0.00 0.00 0.00 4.70
1784 3853 2.092699 GCCTATTTCCTTGTGAGCCTCT 60.093 50.000 0.00 0.00 0.00 3.69
1785 3854 3.623453 GCCTATTTCCTTGTGAGCCTCTT 60.623 47.826 0.00 0.00 0.00 2.85
1787 3856 4.080638 CCTATTTCCTTGTGAGCCTCTTCT 60.081 45.833 0.00 0.00 0.00 2.85
1789 3858 4.974645 TTTCCTTGTGAGCCTCTTCTTA 57.025 40.909 0.00 0.00 0.00 2.10
1798 3869 5.940470 TGTGAGCCTCTTCTTATTTCTTTCC 59.060 40.000 0.00 0.00 0.00 3.13
1807 3878 6.872020 TCTTCTTATTTCTTTCCGATTCGTGT 59.128 34.615 5.20 0.00 0.00 4.49
1818 3889 1.463674 GATTCGTGTTGCCTTGGGAT 58.536 50.000 0.00 0.00 0.00 3.85
1829 3900 2.376518 TGCCTTGGGATATCTGGGATTC 59.623 50.000 2.05 0.00 0.00 2.52
1834 3905 1.283321 GGGATATCTGGGATTCCTGCC 59.717 57.143 2.01 0.00 32.70 4.85
1841 3912 1.763770 GGGATTCCTGCCCATCGAT 59.236 57.895 2.01 0.00 45.31 3.59
1842 3913 0.322008 GGGATTCCTGCCCATCGATC 60.322 60.000 2.01 0.00 45.31 3.69
1844 3915 1.902508 GGATTCCTGCCCATCGATCTA 59.097 52.381 0.00 0.00 0.00 1.98
1845 3916 2.093764 GGATTCCTGCCCATCGATCTAG 60.094 54.545 0.00 0.00 0.00 2.43
1846 3917 2.381752 TTCCTGCCCATCGATCTAGA 57.618 50.000 0.00 0.00 0.00 2.43
1847 3918 2.612285 TCCTGCCCATCGATCTAGAT 57.388 50.000 4.47 4.47 0.00 1.98
1848 3919 2.174360 TCCTGCCCATCGATCTAGATG 58.826 52.381 10.74 2.97 45.56 2.90
1862 3933 8.503486 TCGATCTAGATGATAAAAAGTAACGC 57.497 34.615 10.74 0.00 35.14 4.84
1865 3936 7.675270 TCTAGATGATAAAAAGTAACGCGTC 57.325 36.000 14.44 0.00 0.00 5.19
1876 3947 0.311790 TAACGCGTCGAACCTTCAGT 59.688 50.000 14.44 0.00 0.00 3.41
1883 3954 2.557317 GTCGAACCTTCAGTTTCCACA 58.443 47.619 0.00 0.00 39.40 4.17
1899 3970 7.908827 GTTTCCACAAACTTTTCCCTTAAAA 57.091 32.000 0.00 0.00 39.17 1.52
1911 3982 7.948034 TTTTCCCTTAAAAGTCAGAGTTGAA 57.052 32.000 0.00 0.00 31.72 2.69
1912 3983 8.533569 TTTTCCCTTAAAAGTCAGAGTTGAAT 57.466 30.769 0.00 0.00 31.72 2.57
1945 4309 2.398554 CCCGGCCACGTGATTTGAG 61.399 63.158 19.30 0.00 38.78 3.02
1957 4321 5.796935 CACGTGATTTGAGAAAATGGATGTC 59.203 40.000 10.90 0.00 0.00 3.06
1977 4341 2.112297 GGTCCGACTTGGTGCCAA 59.888 61.111 3.43 3.43 39.52 4.52
1978 4342 1.527380 GGTCCGACTTGGTGCCAAA 60.527 57.895 5.10 0.00 39.52 3.28
1984 4351 2.095263 CCGACTTGGTGCCAAATTACAG 60.095 50.000 5.10 0.00 35.33 2.74
1986 4353 1.618343 ACTTGGTGCCAAATTACAGCC 59.382 47.619 5.10 0.00 35.33 4.85
1990 4357 0.109319 GTGCCAAATTACAGCCACCG 60.109 55.000 0.00 0.00 0.00 4.94
1992 4359 0.170339 GCCAAATTACAGCCACCGTC 59.830 55.000 0.00 0.00 0.00 4.79
2032 4399 4.872691 GTGTAGCATTGCTTGACAGATAGT 59.127 41.667 17.71 0.00 40.44 2.12
2050 4495 7.338703 ACAGATAGTACCACGATTGTTTCTAGA 59.661 37.037 0.00 0.00 0.00 2.43
2090 4535 4.045636 AGCGAAATTGCTTGTGTTTTCT 57.954 36.364 0.00 0.00 44.46 2.52
2122 4567 5.652891 AGTGTGGTACAGTAGTGATTAGGAG 59.347 44.000 4.09 0.00 41.80 3.69
2126 4571 7.670979 TGTGGTACAGTAGTGATTAGGAGTTTA 59.329 37.037 4.09 0.00 41.80 2.01
2127 4572 8.189460 GTGGTACAGTAGTGATTAGGAGTTTAG 58.811 40.741 4.09 0.00 41.80 1.85
2154 4599 3.119849 ACGTCAATAGGCTTGACATTTGC 60.120 43.478 17.07 0.00 46.70 3.68
2341 6615 6.878923 TCATTGTTTGGTAGTCTCAAGTATGG 59.121 38.462 0.00 0.00 0.00 2.74
2413 10462 5.713822 ACTCGCTCCGTTTCAAATTATAC 57.286 39.130 0.00 0.00 0.00 1.47
2438 10487 8.524487 ACGAAGTTATAGATTTGTTCTGAGTCT 58.476 33.333 0.00 0.00 37.78 3.24
2488 10537 9.733219 ATTTTTCACCAAGTTAATGCAAAAATG 57.267 25.926 0.00 0.00 33.23 2.32
2489 10538 7.856145 TTTCACCAAGTTAATGCAAAAATGT 57.144 28.000 0.00 0.00 0.00 2.71
2490 10539 6.841443 TCACCAAGTTAATGCAAAAATGTG 57.159 33.333 0.00 0.00 0.00 3.21
2491 10540 5.757320 TCACCAAGTTAATGCAAAAATGTGG 59.243 36.000 0.00 2.88 0.00 4.17
2548 10597 7.973944 GGCCCGGAAATATATTTTATGATGAAC 59.026 37.037 11.92 0.00 0.00 3.18
2627 10676 4.600111 GGAGGGGGTATATTGTTATCACCA 59.400 45.833 0.00 0.00 0.00 4.17
2634 10683 7.159372 GGGTATATTGTTATCACCATTCGTCT 58.841 38.462 0.00 0.00 0.00 4.18
2651 10700 3.430895 TCGTCTAACTTCAATTGCCGTTC 59.569 43.478 13.21 2.73 0.00 3.95
2677 10726 1.270094 CGTTACAGGAGGTTGACAGCA 60.270 52.381 0.00 0.00 0.00 4.41
2678 10727 2.143925 GTTACAGGAGGTTGACAGCAC 58.856 52.381 0.00 0.00 0.00 4.40
2679 10728 1.717032 TACAGGAGGTTGACAGCACT 58.283 50.000 0.00 0.00 0.00 4.40
2680 10729 1.717032 ACAGGAGGTTGACAGCACTA 58.283 50.000 0.00 0.00 0.00 2.74
2681 10730 1.344763 ACAGGAGGTTGACAGCACTAC 59.655 52.381 0.00 0.00 0.00 2.73
2682 10731 1.344438 CAGGAGGTTGACAGCACTACA 59.656 52.381 0.00 0.00 0.00 2.74
2691 10740 3.356290 TGACAGCACTACAGCAGATCTA 58.644 45.455 0.00 0.00 36.85 1.98
2694 10743 3.956848 ACAGCACTACAGCAGATCTATCA 59.043 43.478 0.00 0.00 36.85 2.15
2714 10763 8.607713 TCTATCAAGGGGTTGTACTTTTTCATA 58.392 33.333 0.00 0.00 0.00 2.15
2723 10772 7.227910 GGGTTGTACTTTTTCATAGAGTGAACA 59.772 37.037 0.00 0.00 46.14 3.18
2724 10773 8.068380 GGTTGTACTTTTTCATAGAGTGAACAC 58.932 37.037 0.00 0.00 46.14 3.32
2772 10821 1.135460 GTACAGTGACTAGGACCACGC 60.135 57.143 0.00 0.00 38.26 5.34
2775 10824 1.215647 GTGACTAGGACCACGCCAG 59.784 63.158 0.00 0.00 0.00 4.85
2850 10900 5.941146 AATAGGGGAAATAGGCAACCATA 57.059 39.130 0.00 0.00 37.17 2.74
2852 10902 3.131252 AGGGGAAATAGGCAACCATAGT 58.869 45.455 0.00 0.00 37.17 2.12
2926 10978 3.169099 TGGGGTCCAAATATTTGTGGTG 58.831 45.455 23.24 10.68 36.45 4.17
2981 11063 7.645058 AGGTAGGATTCATTGTTTGGTAATG 57.355 36.000 0.00 0.00 36.98 1.90
3053 11135 8.883731 TCAAACTATTTGAAGTTCTAGCTATGC 58.116 33.333 4.17 0.00 45.94 3.14
3290 11391 4.887071 TCACCTTGTGAGCAACTGTAATTT 59.113 37.500 0.00 0.00 37.67 1.82
3475 12431 7.139392 GGAAGTCTGGTCAAACAAGAAATTAC 58.861 38.462 0.00 0.00 0.00 1.89
3511 12467 8.145122 ACATATGCATTCATATCAATTGTGCAA 58.855 29.630 17.97 10.26 42.40 4.08
3512 12468 8.647226 CATATGCATTCATATCAATTGTGCAAG 58.353 33.333 17.97 9.87 42.40 4.01
3521 12477 2.892215 TCAATTGTGCAAGATCAGGCAA 59.108 40.909 12.18 0.00 42.45 4.52
3529 12485 5.528690 TGTGCAAGATCAGGCAAGTATATTC 59.471 40.000 12.18 0.19 42.45 1.75
3628 12625 2.548057 GCACTCGAACATTTGAAGTGGA 59.452 45.455 0.00 0.00 0.00 4.02
3674 12671 8.472007 TGTCACCTAATTTTGTTCCAAATACT 57.528 30.769 0.00 0.00 0.00 2.12
3745 12744 4.746611 CGGAAAAAGCAAGCTTCTCATTTT 59.253 37.500 7.88 3.54 34.84 1.82
3816 12819 4.665833 TCATATTCTGGTTACCTCGTGG 57.334 45.455 2.07 0.99 39.83 4.94
3817 12820 4.283337 TCATATTCTGGTTACCTCGTGGA 58.717 43.478 11.17 0.00 37.04 4.02
3929 13236 1.135199 CATGGTGGCTGCATTTGTCTC 60.135 52.381 0.50 0.00 0.00 3.36
3933 13240 2.157738 GTGGCTGCATTTGTCTCTCTT 58.842 47.619 0.50 0.00 0.00 2.85
3968 13275 8.603181 GCCTTAGTTGCATTTGTAATAAAATGG 58.397 33.333 10.66 0.00 44.30 3.16
3977 13284 7.009174 GCATTTGTAATAAAATGGAGTTGGTCG 59.991 37.037 10.66 0.00 44.30 4.79
4041 13348 5.333566 TGGTAAATCAAGAAGAAAGGGGT 57.666 39.130 0.00 0.00 0.00 4.95
4102 13411 3.153919 TGTGACCCAAACAGCTTATTCC 58.846 45.455 0.00 0.00 0.00 3.01
4138 13447 9.624697 TGTTATGAGTTAATTTTGCTGTCATTC 57.375 29.630 0.00 0.00 0.00 2.67
4141 13450 6.680810 TGAGTTAATTTTGCTGTCATTCCAG 58.319 36.000 0.00 0.00 35.49 3.86
4212 13547 5.101628 ACAAAGTTATGTGCAGTTTGTGTG 58.898 37.500 6.23 0.00 43.23 3.82
4221 13556 2.258755 GCAGTTTGTGTGTGTTGTTCC 58.741 47.619 0.00 0.00 0.00 3.62
4249 13587 8.945195 TCAAAGGAATATAAGCATCAATCCAT 57.055 30.769 0.00 0.00 0.00 3.41
4374 13864 6.263842 TCTTTTGTCAGCAATTCAGAGTTCAT 59.736 34.615 0.00 0.00 34.18 2.57
4431 13922 7.881775 AATCCCACAATGTAGATTTTAGGAC 57.118 36.000 5.34 0.00 0.00 3.85
4433 13924 7.743116 TCCCACAATGTAGATTTTAGGACTA 57.257 36.000 0.00 0.00 0.00 2.59
4513 14013 3.627577 CAGAATCACCGTAATCCCCTTTG 59.372 47.826 0.00 0.00 0.00 2.77
4547 14050 1.946768 CAGGAGCTCTCTTAGGAGTCG 59.053 57.143 14.64 0.00 40.29 4.18
4957 15098 6.587226 TCATTTTCCTTTCTTGCATTTCATCG 59.413 34.615 0.00 0.00 0.00 3.84
5294 15487 1.833630 TGGCTGATAGACTTCACAGGG 59.166 52.381 0.00 0.00 0.00 4.45
5440 16305 3.649023 TCTTTCAAGGTGTAGGCTTACCA 59.351 43.478 18.98 0.98 39.46 3.25
5550 16419 8.575649 AGTACCATACTAATTTTCCAACTTGG 57.424 34.615 0.74 0.74 37.23 3.61
5635 16504 4.957296 ACTTTGTGTACAAGGAGAACGAT 58.043 39.130 12.93 0.00 36.57 3.73
5650 16519 3.446873 AGAACGATGAGAGCATGAAGACT 59.553 43.478 0.00 0.00 34.11 3.24
5671 16540 5.116180 ACTATGTACAACCACATTGATCCG 58.884 41.667 0.00 0.00 41.23 4.18
5802 16671 3.062639 GCAGATGTTAACCATGTCGTCAG 59.937 47.826 2.48 0.00 32.56 3.51
5889 16758 2.009681 TCGGCCAGCCATCTTATCTA 57.990 50.000 9.78 0.00 35.37 1.98
5927 16796 2.817396 GGAGCTTCAGTGAGCCGC 60.817 66.667 9.94 6.91 43.74 6.53
5953 16822 0.173708 GGTTCTCGGTACAGCTCTGG 59.826 60.000 1.66 0.00 34.19 3.86
5954 16823 1.174783 GTTCTCGGTACAGCTCTGGA 58.825 55.000 1.66 0.00 34.19 3.86
5955 16824 1.544691 GTTCTCGGTACAGCTCTGGAA 59.455 52.381 1.66 0.00 34.19 3.53
5956 16825 1.464734 TCTCGGTACAGCTCTGGAAG 58.535 55.000 1.66 0.00 34.19 3.46
5957 16826 1.004394 TCTCGGTACAGCTCTGGAAGA 59.996 52.381 1.66 0.00 43.69 2.87
5983 16863 7.386299 AGAAGAGGAATGTATCGATATGTTTGC 59.614 37.037 8.66 8.10 0.00 3.68
6037 16917 9.388346 CGCTTGTGATGTTACAAAAATAGTTAA 57.612 29.630 0.00 0.00 39.81 2.01
6157 17079 1.586422 GCTTCAGCTGACACTCAACA 58.414 50.000 18.03 0.00 38.21 3.33
6229 17157 2.498726 GCTTCCTCAGCTCCTCCG 59.501 66.667 0.00 0.00 46.27 4.63
6230 17158 2.355193 GCTTCCTCAGCTCCTCCGT 61.355 63.158 0.00 0.00 46.27 4.69
6231 17159 1.813192 CTTCCTCAGCTCCTCCGTC 59.187 63.158 0.00 0.00 0.00 4.79
6232 17160 1.671901 CTTCCTCAGCTCCTCCGTCC 61.672 65.000 0.00 0.00 0.00 4.79
6233 17161 2.043450 CCTCAGCTCCTCCGTCCT 60.043 66.667 0.00 0.00 0.00 3.85
6234 17162 2.124693 CCTCAGCTCCTCCGTCCTC 61.125 68.421 0.00 0.00 0.00 3.71
6235 17163 2.043852 TCAGCTCCTCCGTCCTCC 60.044 66.667 0.00 0.00 0.00 4.30
6236 17164 3.151022 CAGCTCCTCCGTCCTCCC 61.151 72.222 0.00 0.00 0.00 4.30
6237 17165 3.351885 AGCTCCTCCGTCCTCCCT 61.352 66.667 0.00 0.00 0.00 4.20
6238 17166 2.835895 GCTCCTCCGTCCTCCCTC 60.836 72.222 0.00 0.00 0.00 4.30
6239 17167 3.011885 CTCCTCCGTCCTCCCTCT 58.988 66.667 0.00 0.00 0.00 3.69
6240 17168 1.454847 CTCCTCCGTCCTCCCTCTG 60.455 68.421 0.00 0.00 0.00 3.35
6241 17169 2.218115 CTCCTCCGTCCTCCCTCTGT 62.218 65.000 0.00 0.00 0.00 3.41
6242 17170 1.755008 CCTCCGTCCTCCCTCTGTC 60.755 68.421 0.00 0.00 0.00 3.51
6243 17171 1.304952 CTCCGTCCTCCCTCTGTCT 59.695 63.158 0.00 0.00 0.00 3.41
6244 17172 0.750182 CTCCGTCCTCCCTCTGTCTC 60.750 65.000 0.00 0.00 0.00 3.36
6245 17173 1.755008 CCGTCCTCCCTCTGTCTCC 60.755 68.421 0.00 0.00 0.00 3.71
6246 17174 1.755008 CGTCCTCCCTCTGTCTCCC 60.755 68.421 0.00 0.00 0.00 4.30
6247 17175 1.382009 GTCCTCCCTCTGTCTCCCC 60.382 68.421 0.00 0.00 0.00 4.81
6248 17176 2.041405 CCTCCCTCTGTCTCCCCC 60.041 72.222 0.00 0.00 0.00 5.40
6249 17177 2.641746 CCTCCCTCTGTCTCCCCCT 61.642 68.421 0.00 0.00 0.00 4.79
6250 17178 1.075600 CTCCCTCTGTCTCCCCCTC 60.076 68.421 0.00 0.00 0.00 4.30
6251 17179 2.041405 CCCTCTGTCTCCCCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
6252 17180 2.041405 CCTCTGTCTCCCCCTCCC 60.041 72.222 0.00 0.00 0.00 4.30
6253 17181 2.641746 CCTCTGTCTCCCCCTCCCT 61.642 68.421 0.00 0.00 0.00 4.20
6254 17182 1.075600 CTCTGTCTCCCCCTCCCTC 60.076 68.421 0.00 0.00 0.00 4.30
6255 17183 2.041405 CTGTCTCCCCCTCCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
6259 17187 3.039526 CTCCCCCTCCCTCCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
6263 17191 1.074850 CCCCTCCCTCCCTCTCTTC 60.075 68.421 0.00 0.00 0.00 2.87
6264 17192 1.074850 CCCTCCCTCCCTCTCTTCC 60.075 68.421 0.00 0.00 0.00 3.46
6266 17194 0.267356 CCTCCCTCCCTCTCTTCCAT 59.733 60.000 0.00 0.00 0.00 3.41
6272 17200 4.077745 TCCCTCCCTCTCTTCCATTATTCT 60.078 45.833 0.00 0.00 0.00 2.40
6274 17202 4.021544 CCTCCCTCTCTTCCATTATTCTCG 60.022 50.000 0.00 0.00 0.00 4.04
6310 17239 1.979693 AACTCTCTCGGCGCCTCTT 60.980 57.895 26.68 1.56 0.00 2.85
6390 17324 1.303309 GGTGAATCTCGCAATCCCAG 58.697 55.000 0.00 0.00 0.00 4.45
6449 17383 2.781158 GCTCCTCTCCTCTCGTGGC 61.781 68.421 0.00 0.00 0.00 5.01
6454 17388 0.535328 CTCTCCTCTCGTGGCCGATA 60.535 60.000 0.00 0.00 43.27 2.92
6465 17399 1.610522 GTGGCCGATACTGGTACGTAT 59.389 52.381 0.00 0.00 32.64 3.06
6519 17465 1.881973 TCTTGCTGGATTGACAACTGC 59.118 47.619 0.00 0.00 0.00 4.40
6561 17508 6.531594 CCATTCATATTCTGATGATGCATTGC 59.468 38.462 0.00 0.46 35.77 3.56
6593 17544 0.037734 CGGGTAATATTCCCTGCCCC 59.962 60.000 16.33 7.07 42.56 5.80
6621 17572 5.123661 TGATTGATAAATCTTGCGCTTGTCA 59.876 36.000 9.73 5.26 0.00 3.58
6623 17574 3.126858 TGATAAATCTTGCGCTTGTCACC 59.873 43.478 9.73 0.00 0.00 4.02
6629 17580 1.163420 TTGCGCTTGTCACCGTGAAT 61.163 50.000 9.73 0.00 0.00 2.57
6632 17583 1.787847 GCTTGTCACCGTGAATCCG 59.212 57.895 1.88 0.00 0.00 4.18
6635 17586 0.389757 TTGTCACCGTGAATCCGTCA 59.610 50.000 1.88 0.00 0.00 4.35
6636 17587 0.606096 TGTCACCGTGAATCCGTCAT 59.394 50.000 1.88 0.00 38.90 3.06
6639 17590 1.006832 CACCGTGAATCCGTCATTCC 58.993 55.000 0.00 0.00 40.44 3.01
6640 17591 0.107848 ACCGTGAATCCGTCATTCCC 60.108 55.000 2.73 0.00 40.44 3.97
6641 17592 0.178068 CCGTGAATCCGTCATTCCCT 59.822 55.000 2.73 0.00 40.44 4.20
6642 17593 1.290203 CGTGAATCCGTCATTCCCTG 58.710 55.000 2.73 0.00 40.44 4.45
6645 17612 3.081804 GTGAATCCGTCATTCCCTGTTT 58.918 45.455 2.73 0.00 40.44 2.83
6656 17623 5.003160 TCATTCCCTGTTTATGTCACAGTG 58.997 41.667 0.00 0.00 40.19 3.66
6744 17711 2.634777 GATCGAGAGACGGAGCCG 59.365 66.667 7.48 7.48 46.97 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
229 235 0.955428 GCCGTCTCACTCCATTTGCA 60.955 55.000 0.00 0.00 0.00 4.08
234 240 2.005960 GCTACGCCGTCTCACTCCAT 62.006 60.000 0.00 0.00 0.00 3.41
444 930 3.641159 TTCGCTCTTCCATCGCGCA 62.641 57.895 8.75 0.00 45.87 6.09
473 960 0.388659 GGTCATCTCGAGCATGCTCT 59.611 55.000 37.44 21.43 41.98 4.09
522 1009 3.759828 GCGAACGTTGTCGTCCGG 61.760 66.667 5.00 0.00 46.92 5.14
798 1348 2.096318 GTCGGCGTAAATTTTGACGGAA 60.096 45.455 15.65 0.00 39.46 4.30
876 1431 1.942657 GCAGTCCACGATACGGTACTA 59.057 52.381 0.00 0.00 0.00 1.82
880 1435 2.890371 GGCAGTCCACGATACGGT 59.110 61.111 0.00 0.00 0.00 4.83
881 1436 2.278596 CGGCAGTCCACGATACGG 60.279 66.667 0.00 0.00 0.00 4.02
882 1437 1.585521 GTCGGCAGTCCACGATACG 60.586 63.158 0.00 0.00 41.53 3.06
883 1438 1.226888 GGTCGGCAGTCCACGATAC 60.227 63.158 0.00 0.00 41.53 2.24
885 1440 2.227089 GAAGGTCGGCAGTCCACGAT 62.227 60.000 2.78 0.00 41.53 3.73
886 1441 2.915659 AAGGTCGGCAGTCCACGA 60.916 61.111 2.78 0.00 36.68 4.35
888 1443 2.047179 GGAAGGTCGGCAGTCCAC 60.047 66.667 2.78 0.00 0.00 4.02
890 1445 4.097361 GGGGAAGGTCGGCAGTCC 62.097 72.222 0.00 0.00 0.00 3.85
891 1446 3.003763 AGGGGAAGGTCGGCAGTC 61.004 66.667 0.00 0.00 0.00 3.51
892 1447 3.322466 CAGGGGAAGGTCGGCAGT 61.322 66.667 0.00 0.00 0.00 4.40
893 1448 3.322466 ACAGGGGAAGGTCGGCAG 61.322 66.667 0.00 0.00 0.00 4.85
896 1451 4.760047 CGCACAGGGGAAGGTCGG 62.760 72.222 0.00 0.00 0.00 4.79
897 1452 1.672854 TATCGCACAGGGGAAGGTCG 61.673 60.000 0.00 0.00 39.63 4.79
899 1454 1.213296 AATATCGCACAGGGGAAGGT 58.787 50.000 0.00 0.00 39.63 3.50
901 1456 2.358898 CCAAAATATCGCACAGGGGAAG 59.641 50.000 0.00 0.00 39.63 3.46
903 1458 1.409521 CCCAAAATATCGCACAGGGGA 60.410 52.381 0.00 0.00 40.57 4.81
904 1459 1.032014 CCCAAAATATCGCACAGGGG 58.968 55.000 0.00 0.00 0.00 4.79
905 1460 1.032014 CCCCAAAATATCGCACAGGG 58.968 55.000 0.00 0.00 34.58 4.45
908 1463 1.683629 GGACCCCCAAAATATCGCACA 60.684 52.381 0.00 0.00 0.00 4.57
909 1464 1.029681 GGACCCCCAAAATATCGCAC 58.970 55.000 0.00 0.00 0.00 5.34
910 1465 0.106419 GGGACCCCCAAAATATCGCA 60.106 55.000 0.00 0.00 44.65 5.10
911 1466 2.728397 GGGACCCCCAAAATATCGC 58.272 57.895 0.00 0.00 44.65 4.58
931 1486 1.781555 CATGTGAACGACTCGGCAC 59.218 57.895 15.68 15.68 37.02 5.01
932 1487 2.027073 GCATGTGAACGACTCGGCA 61.027 57.895 2.98 0.00 0.00 5.69
933 1488 1.361668 ATGCATGTGAACGACTCGGC 61.362 55.000 0.00 0.00 0.00 5.54
935 1490 0.247419 GCATGCATGTGAACGACTCG 60.247 55.000 26.79 0.00 0.00 4.18
937 1492 0.800631 CTGCATGCATGTGAACGACT 59.199 50.000 26.79 0.00 0.00 4.18
938 1493 0.518636 ACTGCATGCATGTGAACGAC 59.481 50.000 26.79 9.65 0.00 4.34
939 1494 1.731709 GTACTGCATGCATGTGAACGA 59.268 47.619 26.79 6.33 0.00 3.85
940 1495 1.527591 CGTACTGCATGCATGTGAACG 60.528 52.381 26.79 23.95 0.00 3.95
941 1496 1.202065 CCGTACTGCATGCATGTGAAC 60.202 52.381 26.79 17.84 0.00 3.18
943 1498 0.744057 CCCGTACTGCATGCATGTGA 60.744 55.000 26.79 13.57 0.00 3.58
946 1501 2.717485 GCCCGTACTGCATGCATG 59.283 61.111 22.97 22.70 0.00 4.06
947 1502 2.516930 GGCCCGTACTGCATGCAT 60.517 61.111 22.97 13.83 0.00 3.96
960 1515 1.451387 CAGATGTGTAACGGGGCCC 60.451 63.158 15.76 15.76 42.39 5.80
961 1516 1.451387 CCAGATGTGTAACGGGGCC 60.451 63.158 0.00 0.00 42.39 5.80
962 1517 1.024579 CACCAGATGTGTAACGGGGC 61.025 60.000 0.00 0.00 42.39 5.80
963 1518 3.153024 CACCAGATGTGTAACGGGG 57.847 57.895 0.00 0.00 42.39 5.73
994 3010 2.233186 GGTGGCGAACTTTCCTAGTACT 59.767 50.000 0.00 0.00 35.54 2.73
995 3011 2.614779 GGTGGCGAACTTTCCTAGTAC 58.385 52.381 0.00 0.00 35.54 2.73
996 3012 1.203052 CGGTGGCGAACTTTCCTAGTA 59.797 52.381 0.00 0.00 35.54 1.82
997 3013 0.037605 CGGTGGCGAACTTTCCTAGT 60.038 55.000 0.00 0.00 39.32 2.57
1045 3061 0.827507 AATGACTTGCGCCAAAGGGT 60.828 50.000 4.18 0.00 36.17 4.34
1106 3122 2.837031 TTTGGAGGAGCCGGCCATTC 62.837 60.000 26.15 17.70 40.66 2.67
1150 3167 2.159043 CCATGGAATCTCACGCTACTGT 60.159 50.000 5.56 0.00 0.00 3.55
1155 3172 2.171237 TGAATCCATGGAATCTCACGCT 59.829 45.455 26.46 2.17 0.00 5.07
1229 3250 3.216371 AAGGTGGGGGAGAGGGGA 61.216 66.667 0.00 0.00 0.00 4.81
1231 3252 1.690985 GAGAAGGTGGGGGAGAGGG 60.691 68.421 0.00 0.00 0.00 4.30
1232 3253 0.252927 AAGAGAAGGTGGGGGAGAGG 60.253 60.000 0.00 0.00 0.00 3.69
1233 3254 0.908198 CAAGAGAAGGTGGGGGAGAG 59.092 60.000 0.00 0.00 0.00 3.20
1234 3255 0.547712 CCAAGAGAAGGTGGGGGAGA 60.548 60.000 0.00 0.00 0.00 3.71
1235 3256 0.547712 TCCAAGAGAAGGTGGGGGAG 60.548 60.000 0.00 0.00 35.46 4.30
1236 3257 0.121197 ATCCAAGAGAAGGTGGGGGA 59.879 55.000 0.00 0.00 35.46 4.81
1237 3258 1.002857 AATCCAAGAGAAGGTGGGGG 58.997 55.000 0.00 0.00 35.46 5.40
1238 3259 2.846827 ACTAATCCAAGAGAAGGTGGGG 59.153 50.000 0.00 0.00 35.46 4.96
1239 3260 3.777522 AGACTAATCCAAGAGAAGGTGGG 59.222 47.826 0.00 0.00 35.46 4.61
1242 3263 3.131400 GCGAGACTAATCCAAGAGAAGGT 59.869 47.826 0.00 0.00 0.00 3.50
1245 3266 2.479730 GCGCGAGACTAATCCAAGAGAA 60.480 50.000 12.10 0.00 0.00 2.87
1252 3273 1.007154 GGGAGCGCGAGACTAATCC 60.007 63.158 12.10 0.00 0.00 3.01
1258 3279 4.244802 CTCTCGGGAGCGCGAGAC 62.245 72.222 28.19 0.00 36.49 3.36
1271 3292 3.169908 ACTTTTCTCCTCCTGACCTCTC 58.830 50.000 0.00 0.00 0.00 3.20
1273 3294 2.900546 TGACTTTTCTCCTCCTGACCTC 59.099 50.000 0.00 0.00 0.00 3.85
1274 3295 2.635427 GTGACTTTTCTCCTCCTGACCT 59.365 50.000 0.00 0.00 0.00 3.85
1275 3296 2.368875 TGTGACTTTTCTCCTCCTGACC 59.631 50.000 0.00 0.00 0.00 4.02
1278 3318 3.556004 GGACTGTGACTTTTCTCCTCCTG 60.556 52.174 0.00 0.00 0.00 3.86
1284 3324 4.698575 AGAGTTGGACTGTGACTTTTCTC 58.301 43.478 0.00 0.00 0.00 2.87
1286 3326 4.698575 AGAGAGTTGGACTGTGACTTTTC 58.301 43.478 0.00 0.00 0.00 2.29
1287 3327 4.698575 GAGAGAGTTGGACTGTGACTTTT 58.301 43.478 0.00 0.00 0.00 2.27
1291 3331 1.667467 GCGAGAGAGTTGGACTGTGAC 60.667 57.143 0.00 0.00 0.00 3.67
1292 3332 0.598562 GCGAGAGAGTTGGACTGTGA 59.401 55.000 0.00 0.00 0.00 3.58
1293 3333 0.389166 GGCGAGAGAGTTGGACTGTG 60.389 60.000 0.00 0.00 0.00 3.66
1294 3334 0.827925 TGGCGAGAGAGTTGGACTGT 60.828 55.000 0.00 0.00 0.00 3.55
1298 3338 1.107114 GAGATGGCGAGAGAGTTGGA 58.893 55.000 0.00 0.00 0.00 3.53
1311 3351 4.003648 ACAGGCGTTAAAAAGAGAGATGG 58.996 43.478 0.00 0.00 0.00 3.51
1439 3495 8.159447 TCAAGAATAAATCTCCATACCAGGATG 58.841 37.037 0.00 0.00 37.42 3.51
1441 3497 7.690454 TCAAGAATAAATCTCCATACCAGGA 57.310 36.000 0.00 0.00 37.42 3.86
1442 3498 8.930846 AATCAAGAATAAATCTCCATACCAGG 57.069 34.615 0.00 0.00 37.42 4.45
1443 3499 9.565090 TGAATCAAGAATAAATCTCCATACCAG 57.435 33.333 0.00 0.00 37.42 4.00
1444 3500 9.565090 CTGAATCAAGAATAAATCTCCATACCA 57.435 33.333 0.00 0.00 37.42 3.25
1445 3501 9.566432 ACTGAATCAAGAATAAATCTCCATACC 57.434 33.333 0.00 0.00 37.42 2.73
1458 3514 9.485206 CCAAGAAATGAAAACTGAATCAAGAAT 57.515 29.630 0.00 0.00 0.00 2.40
1484 3540 1.967319 TCCAGCAGGACAAACAAGAC 58.033 50.000 0.00 0.00 39.61 3.01
1659 3715 7.094248 TGTTCATACTAGCAGAGTTACGGTTAA 60.094 37.037 0.00 0.00 39.81 2.01
1664 3720 6.495706 TGATGTTCATACTAGCAGAGTTACG 58.504 40.000 0.00 0.00 39.81 3.18
1718 3787 1.933853 GCTCTATTGTTGGTGCTACGG 59.066 52.381 0.00 0.00 0.00 4.02
1739 3808 9.498176 GGCTAAAGATTTCGGGATATACTTAAA 57.502 33.333 0.00 0.00 0.00 1.52
1745 3814 9.886132 GAAATAGGCTAAAGATTTCGGGATATA 57.114 33.333 0.00 0.00 31.82 0.86
1746 3815 7.829706 GGAAATAGGCTAAAGATTTCGGGATAT 59.170 37.037 12.11 0.00 39.45 1.63
1750 3819 5.377478 AGGAAATAGGCTAAAGATTTCGGG 58.623 41.667 12.11 0.00 39.45 5.14
1752 3821 7.065803 TCACAAGGAAATAGGCTAAAGATTTCG 59.934 37.037 12.11 4.34 39.45 3.46
1775 3844 5.064071 CGGAAAGAAATAAGAAGAGGCTCAC 59.936 44.000 18.26 10.31 0.00 3.51
1782 3851 6.872020 ACACGAATCGGAAAGAAATAAGAAGA 59.128 34.615 7.80 0.00 0.00 2.87
1783 3852 7.061752 ACACGAATCGGAAAGAAATAAGAAG 57.938 36.000 7.80 0.00 0.00 2.85
1784 3853 7.295201 CAACACGAATCGGAAAGAAATAAGAA 58.705 34.615 7.80 0.00 0.00 2.52
1785 3854 6.619874 GCAACACGAATCGGAAAGAAATAAGA 60.620 38.462 7.80 0.00 0.00 2.10
1787 3856 5.387279 GCAACACGAATCGGAAAGAAATAA 58.613 37.500 7.80 0.00 0.00 1.40
1789 3858 3.365969 GGCAACACGAATCGGAAAGAAAT 60.366 43.478 7.80 0.00 0.00 2.17
1798 3869 0.953471 TCCCAAGGCAACACGAATCG 60.953 55.000 0.00 0.00 41.41 3.34
1807 3878 1.905839 TCCCAGATATCCCAAGGCAA 58.094 50.000 0.00 0.00 0.00 4.52
1829 3900 2.174360 TCATCTAGATCGATGGGCAGG 58.826 52.381 0.54 0.00 40.85 4.85
1841 3912 6.412943 CGACGCGTTACTTTTTATCATCTAGA 59.587 38.462 15.53 0.00 0.00 2.43
1842 3913 6.412943 TCGACGCGTTACTTTTTATCATCTAG 59.587 38.462 15.53 0.00 0.00 2.43
1844 3915 5.097529 TCGACGCGTTACTTTTTATCATCT 58.902 37.500 15.53 0.00 0.00 2.90
1845 3916 5.365766 TCGACGCGTTACTTTTTATCATC 57.634 39.130 15.53 0.00 0.00 2.92
1846 3917 5.445010 GGTTCGACGCGTTACTTTTTATCAT 60.445 40.000 15.53 0.00 0.00 2.45
1847 3918 4.143347 GGTTCGACGCGTTACTTTTTATCA 60.143 41.667 15.53 0.00 0.00 2.15
1848 3919 4.090498 AGGTTCGACGCGTTACTTTTTATC 59.910 41.667 15.53 0.00 0.00 1.75
1849 3920 3.989817 AGGTTCGACGCGTTACTTTTTAT 59.010 39.130 15.53 0.00 0.00 1.40
1850 3921 3.380142 AGGTTCGACGCGTTACTTTTTA 58.620 40.909 15.53 0.00 0.00 1.52
1851 3922 2.204237 AGGTTCGACGCGTTACTTTTT 58.796 42.857 15.53 0.00 0.00 1.94
1862 3933 1.525619 GTGGAAACTGAAGGTTCGACG 59.474 52.381 7.38 0.00 37.12 5.12
1865 3936 3.691498 GTTTGTGGAAACTGAAGGTTCG 58.309 45.455 2.14 0.00 38.78 3.95
1899 3970 3.008375 TGCCTAAGCATTCAACTCTGACT 59.992 43.478 0.00 0.00 46.52 3.41
1945 4309 0.377203 GGACCGCGACATCCATTTTC 59.623 55.000 8.23 0.00 34.87 2.29
1968 4332 1.709578 TGGCTGTAATTTGGCACCAA 58.290 45.000 0.00 0.00 33.80 3.67
1977 4341 0.035739 AACCGACGGTGGCTGTAATT 59.964 50.000 22.53 0.00 35.34 1.40
1978 4342 0.035739 AAACCGACGGTGGCTGTAAT 59.964 50.000 22.53 0.00 35.34 1.89
1984 4351 1.571215 CCAAGTAAACCGACGGTGGC 61.571 60.000 22.53 13.54 35.34 5.01
1986 4353 1.571215 GGCCAAGTAAACCGACGGTG 61.571 60.000 22.53 7.13 35.34 4.94
1990 4357 1.951602 ACAAAGGCCAAGTAAACCGAC 59.048 47.619 5.01 0.00 0.00 4.79
1992 4359 1.679153 ACACAAAGGCCAAGTAAACCG 59.321 47.619 5.01 0.00 0.00 4.44
2032 4399 5.011329 ACAACCTCTAGAAACAATCGTGGTA 59.989 40.000 0.00 0.00 0.00 3.25
2050 4495 3.502211 CGCTCAATGGAAAAGTACAACCT 59.498 43.478 0.00 0.00 0.00 3.50
2090 4535 5.048294 CACTACTGTACCACACTATGACACA 60.048 44.000 0.00 0.00 0.00 3.72
2122 4567 2.856557 GCCTATTGACGTCGTCCTAAAC 59.143 50.000 22.05 4.51 0.00 2.01
2126 4571 1.135083 CAAGCCTATTGACGTCGTCCT 60.135 52.381 22.05 12.12 0.00 3.85
2127 4572 1.135199 TCAAGCCTATTGACGTCGTCC 60.135 52.381 22.05 5.97 0.00 4.79
2385 6659 3.306917 TGAAACGGAGCGAGTATTCAA 57.693 42.857 0.00 0.00 0.00 2.69
2387 6661 4.859629 ATTTGAAACGGAGCGAGTATTC 57.140 40.909 0.00 0.00 0.00 1.75
2413 10462 8.918961 AGACTCAGAACAAATCTATAACTTCG 57.081 34.615 0.00 0.00 36.32 3.79
2424 10473 9.832445 TTTCTGTAAACTAGACTCAGAACAAAT 57.168 29.630 16.86 0.00 42.29 2.32
2432 10481 7.715249 AGCACATTTTTCTGTAAACTAGACTCA 59.285 33.333 0.00 0.00 0.00 3.41
2464 10513 8.180267 CACATTTTTGCATTAACTTGGTGAAAA 58.820 29.630 0.00 0.00 0.00 2.29
2477 10526 7.933033 GGATATTATCACCCACATTTTTGCATT 59.067 33.333 6.04 0.00 0.00 3.56
2480 10529 6.701400 GTGGATATTATCACCCACATTTTTGC 59.299 38.462 0.00 0.00 46.13 3.68
2488 10537 8.862325 TTATCATTGTGGATATTATCACCCAC 57.138 34.615 6.04 0.00 46.82 4.61
2489 10538 8.668653 ACTTATCATTGTGGATATTATCACCCA 58.331 33.333 6.04 0.00 33.29 4.51
2510 10559 4.986054 TTTCCGGGCCACATATACTTAT 57.014 40.909 4.39 0.00 0.00 1.73
2514 10563 7.875327 AAATATATTTCCGGGCCACATATAC 57.125 36.000 4.39 0.00 0.00 1.47
2520 10569 6.827586 TCATAAAATATATTTCCGGGCCAC 57.172 37.500 11.08 0.00 0.00 5.01
2522 10571 7.639113 TCATCATAAAATATATTTCCGGGCC 57.361 36.000 11.08 0.00 0.00 5.80
2524 10573 9.243105 AGGTTCATCATAAAATATATTTCCGGG 57.757 33.333 11.08 2.76 0.00 5.73
2607 10656 5.646360 CGAATGGTGATAACAATATACCCCC 59.354 44.000 0.00 0.00 0.00 5.40
2627 10676 4.000988 ACGGCAATTGAAGTTAGACGAAT 58.999 39.130 10.34 0.00 0.00 3.34
2634 10683 4.153475 GCTACAGAACGGCAATTGAAGTTA 59.847 41.667 10.34 0.00 0.00 2.24
2668 10717 2.154854 TCTGCTGTAGTGCTGTCAAC 57.845 50.000 0.00 0.00 34.27 3.18
2677 10726 3.900601 CCCCTTGATAGATCTGCTGTAGT 59.099 47.826 5.18 0.00 0.00 2.73
2678 10727 3.900601 ACCCCTTGATAGATCTGCTGTAG 59.099 47.826 5.18 0.00 0.00 2.74
2679 10728 3.928754 ACCCCTTGATAGATCTGCTGTA 58.071 45.455 5.18 0.00 0.00 2.74
2680 10729 2.769209 ACCCCTTGATAGATCTGCTGT 58.231 47.619 5.18 0.00 0.00 4.40
2681 10730 3.118112 ACAACCCCTTGATAGATCTGCTG 60.118 47.826 5.18 0.00 0.00 4.41
2682 10731 3.118531 ACAACCCCTTGATAGATCTGCT 58.881 45.455 5.18 0.00 0.00 4.24
2691 10740 7.466804 TCTATGAAAAAGTACAACCCCTTGAT 58.533 34.615 0.00 0.00 0.00 2.57
2694 10743 6.715264 CACTCTATGAAAAAGTACAACCCCTT 59.285 38.462 0.00 0.00 0.00 3.95
2723 10772 2.616376 TGATACGCAAAACACAAGCAGT 59.384 40.909 0.00 0.00 0.00 4.40
2724 10773 3.266541 TGATACGCAAAACACAAGCAG 57.733 42.857 0.00 0.00 0.00 4.24
2772 10821 1.474077 GCCAAATGTCAAGCCTACTGG 59.526 52.381 0.00 0.00 0.00 4.00
2775 10824 1.474077 CCAGCCAAATGTCAAGCCTAC 59.526 52.381 0.00 0.00 0.00 3.18
2850 10900 6.233434 TCAAATTGTCTATCAGTGCAAGACT 58.767 36.000 19.31 0.00 40.25 3.24
2852 10902 6.712095 ACTTCAAATTGTCTATCAGTGCAAGA 59.288 34.615 0.00 0.00 0.00 3.02
2896 10948 1.710816 TTTGGACCCCATTTCCACAC 58.289 50.000 0.00 0.00 43.10 3.82
2981 11063 5.416947 ACTCCAAAGTGTATATGTCCGAAC 58.583 41.667 0.00 0.00 33.32 3.95
3053 11135 7.333423 TCAAATATGGAGAAGTTTGACTTACGG 59.667 37.037 0.00 0.00 38.80 4.02
3290 11391 7.504238 ACTTCAACCACAACACTATAAAATGGA 59.496 33.333 0.00 0.00 0.00 3.41
3511 12467 6.939163 GGTCAATGAATATACTTGCCTGATCT 59.061 38.462 0.00 0.00 0.00 2.75
3512 12468 6.712095 TGGTCAATGAATATACTTGCCTGATC 59.288 38.462 0.00 0.00 0.00 2.92
3529 12485 8.542497 AACAGAATTTGAAATGATGGTCAATG 57.458 30.769 7.31 0.00 33.90 2.82
3628 12625 1.053264 TGGCCAACCCTTGTGCAAAT 61.053 50.000 0.61 0.00 33.59 2.32
3674 12671 7.551585 TGATGCTCAACCTTTAAACAGAAAAA 58.448 30.769 0.00 0.00 0.00 1.94
3745 12744 3.134081 TCTGCTCAGCATCATCTGAATCA 59.866 43.478 0.00 0.00 41.99 2.57
3812 12815 3.457234 TGCATGCTAATAGTTCTCCACG 58.543 45.455 20.33 0.00 0.00 4.94
3816 12819 9.823098 CATAAAATCTGCATGCTAATAGTTCTC 57.177 33.333 20.33 0.00 0.00 2.87
3817 12820 8.790718 CCATAAAATCTGCATGCTAATAGTTCT 58.209 33.333 20.33 1.46 0.00 3.01
3968 13275 5.690857 GGCTATATTACAGTTCGACCAACTC 59.309 44.000 0.00 0.00 44.14 3.01
3970 13277 5.353938 TGGCTATATTACAGTTCGACCAAC 58.646 41.667 0.00 0.00 34.86 3.77
3971 13278 5.601583 TGGCTATATTACAGTTCGACCAA 57.398 39.130 0.00 0.00 0.00 3.67
3977 13284 7.385478 GGCTTCTACTTGGCTATATTACAGTTC 59.615 40.741 0.00 0.00 0.00 3.01
4041 13348 9.929180 GTATGCAGGAGATAAACTGACATAATA 57.071 33.333 0.00 0.00 36.47 0.98
4102 13411 7.687941 AATTAACTCATAACACAAGGACTGG 57.312 36.000 0.00 0.00 0.00 4.00
4212 13547 1.305201 TCCTTTGAGCGGAACAACAC 58.695 50.000 0.00 0.00 0.00 3.32
4221 13556 5.929697 TGATGCTTATATTCCTTTGAGCG 57.070 39.130 0.00 0.00 33.03 5.03
4249 13587 8.834465 GGAAGTATCTGAAGTACGTTATACAGA 58.166 37.037 14.10 14.10 38.44 3.41
4258 13596 4.744570 TGCAAGGAAGTATCTGAAGTACG 58.255 43.478 0.00 0.00 0.00 3.67
4330 13818 6.846325 AAAGACTGTGCTAAGTAAAGACAC 57.154 37.500 0.00 0.00 0.00 3.67
4333 13821 7.045416 TGACAAAAGACTGTGCTAAGTAAAGA 58.955 34.615 0.00 0.00 0.00 2.52
4346 13836 5.008415 ACTCTGAATTGCTGACAAAAGACTG 59.992 40.000 0.00 0.00 39.77 3.51
4431 13922 5.991328 ATGCATGGTAAGACATTTCGTAG 57.009 39.130 0.00 0.00 0.00 3.51
4433 13924 4.943705 AGAATGCATGGTAAGACATTTCGT 59.056 37.500 0.00 0.00 33.07 3.85
4513 14013 2.045536 CCTGCAGGCTCTGGTTCC 60.046 66.667 22.33 0.00 31.21 3.62
4547 14050 5.299279 TCCAGTGAAGTGGAAAGATGAAAAC 59.701 40.000 4.32 0.00 44.01 2.43
4706 14811 8.680903 GGAGATTGTTACATGTGAGAATTGATT 58.319 33.333 13.27 2.23 0.00 2.57
4717 14822 3.054361 GTCCCCAGGAGATTGTTACATGT 60.054 47.826 2.69 2.69 29.39 3.21
4943 15053 4.128925 AGCTACTCGATGAAATGCAAGA 57.871 40.909 0.00 0.00 0.00 3.02
5237 15430 0.035881 CTTCAGGCAGGCTGAGAACA 59.964 55.000 24.60 10.89 31.98 3.18
5440 16305 7.885297 ACATGCAACACTATGTTTTATGAAGT 58.115 30.769 16.09 0.00 38.77 3.01
5550 16419 6.218746 AGAACCTGAAAGCATTTGAAACATC 58.781 36.000 0.00 0.00 39.27 3.06
5635 16504 6.333416 GTTGTACATAGTCTTCATGCTCTCA 58.667 40.000 0.00 0.00 0.00 3.27
5650 16519 4.162509 TCCGGATCAATGTGGTTGTACATA 59.837 41.667 0.00 0.00 40.24 2.29
5802 16671 2.432628 CAGGAACCGAGTCCACGC 60.433 66.667 7.05 0.00 40.48 5.34
5889 16758 6.418057 TCCTCAACCAACTTTTGCAATAAT 57.582 33.333 0.00 0.00 0.00 1.28
5927 16796 0.594602 TGTACCGAGAACCGTCACAG 59.405 55.000 0.00 0.00 36.31 3.66
5953 16822 8.519526 ACATATCGATACATTCCTCTTCTCTTC 58.480 37.037 7.41 0.00 0.00 2.87
5954 16823 8.415950 ACATATCGATACATTCCTCTTCTCTT 57.584 34.615 7.41 0.00 0.00 2.85
5955 16824 8.415950 AACATATCGATACATTCCTCTTCTCT 57.584 34.615 7.41 0.00 0.00 3.10
5956 16825 8.920665 CAAACATATCGATACATTCCTCTTCTC 58.079 37.037 7.41 0.00 0.00 2.87
5957 16826 7.386299 GCAAACATATCGATACATTCCTCTTCT 59.614 37.037 7.41 0.00 0.00 2.85
5958 16827 7.171508 TGCAAACATATCGATACATTCCTCTTC 59.828 37.037 7.41 0.00 0.00 2.87
6037 16917 6.948309 GCCAAGGGATTATAGGATTGTTGTAT 59.052 38.462 0.00 0.00 0.00 2.29
6047 16955 3.593442 TGTTGGCCAAGGGATTATAGG 57.407 47.619 21.21 0.00 0.00 2.57
6049 16957 5.960811 TCAAATTGTTGGCCAAGGGATTATA 59.039 36.000 21.21 8.15 36.25 0.98
6053 16961 2.302733 GTCAAATTGTTGGCCAAGGGAT 59.697 45.455 21.21 10.38 36.25 3.85
6117 17025 2.243810 GTTTTGGGGAGTAACATGCCA 58.756 47.619 0.00 0.00 30.95 4.92
6157 17079 0.534877 TGTGGAATCACGCTGTTGCT 60.535 50.000 0.00 0.00 46.42 3.91
6229 17157 1.382009 GGGGAGACAGAGGGAGGAC 60.382 68.421 0.00 0.00 0.00 3.85
6230 17158 2.637640 GGGGGAGACAGAGGGAGGA 61.638 68.421 0.00 0.00 0.00 3.71
6231 17159 2.041405 GGGGGAGACAGAGGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
6232 17160 1.075600 GAGGGGGAGACAGAGGGAG 60.076 68.421 0.00 0.00 0.00 4.30
6233 17161 2.637640 GGAGGGGGAGACAGAGGGA 61.638 68.421 0.00 0.00 0.00 4.20
6234 17162 2.041405 GGAGGGGGAGACAGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
6235 17163 2.041405 GGGAGGGGGAGACAGAGG 60.041 72.222 0.00 0.00 0.00 3.69
6236 17164 1.075600 GAGGGAGGGGGAGACAGAG 60.076 68.421 0.00 0.00 0.00 3.35
6237 17165 2.637640 GGAGGGAGGGGGAGACAGA 61.638 68.421 0.00 0.00 0.00 3.41
6238 17166 2.041405 GGAGGGAGGGGGAGACAG 60.041 72.222 0.00 0.00 0.00 3.51
6239 17167 3.695825 GGGAGGGAGGGGGAGACA 61.696 72.222 0.00 0.00 0.00 3.41
6240 17168 3.369388 AGGGAGGGAGGGGGAGAC 61.369 72.222 0.00 0.00 0.00 3.36
6241 17169 3.036959 GAGGGAGGGAGGGGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
6242 17170 3.039526 AGAGGGAGGGAGGGGGAG 61.040 72.222 0.00 0.00 0.00 4.30
6243 17171 3.036959 GAGAGGGAGGGAGGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
6244 17172 2.613576 GAAGAGAGGGAGGGAGGGGG 62.614 70.000 0.00 0.00 0.00 5.40
6245 17173 1.074850 GAAGAGAGGGAGGGAGGGG 60.075 68.421 0.00 0.00 0.00 4.79
6246 17174 1.074850 GGAAGAGAGGGAGGGAGGG 60.075 68.421 0.00 0.00 0.00 4.30
6247 17175 0.267356 ATGGAAGAGAGGGAGGGAGG 59.733 60.000 0.00 0.00 0.00 4.30
6248 17176 2.188818 AATGGAAGAGAGGGAGGGAG 57.811 55.000 0.00 0.00 0.00 4.30
6249 17177 4.077745 AGAATAATGGAAGAGAGGGAGGGA 60.078 45.833 0.00 0.00 0.00 4.20
6250 17178 4.238669 AGAATAATGGAAGAGAGGGAGGG 58.761 47.826 0.00 0.00 0.00 4.30
6251 17179 4.021544 CGAGAATAATGGAAGAGAGGGAGG 60.022 50.000 0.00 0.00 0.00 4.30
6252 17180 4.560513 GCGAGAATAATGGAAGAGAGGGAG 60.561 50.000 0.00 0.00 0.00 4.30
6253 17181 3.322254 GCGAGAATAATGGAAGAGAGGGA 59.678 47.826 0.00 0.00 0.00 4.20
6254 17182 3.658709 GCGAGAATAATGGAAGAGAGGG 58.341 50.000 0.00 0.00 0.00 4.30
6255 17183 3.312828 CGCGAGAATAATGGAAGAGAGG 58.687 50.000 0.00 0.00 0.00 3.69
6259 17187 2.545952 GGAGCGCGAGAATAATGGAAGA 60.546 50.000 12.10 0.00 0.00 2.87
6263 17191 1.284982 CGGGAGCGCGAGAATAATGG 61.285 60.000 12.10 0.00 0.00 3.16
6264 17192 2.145225 CGGGAGCGCGAGAATAATG 58.855 57.895 12.10 0.00 0.00 1.90
6287 17215 2.995872 GCGCCGAGAGAGTTGGACT 61.996 63.158 0.00 0.00 0.00 3.85
6364 17298 2.508891 GCGAGATTCACCGACGCAG 61.509 63.158 0.00 0.00 46.75 5.18
6390 17324 2.565841 CTGCTACTATGCCCAAGAACC 58.434 52.381 0.00 0.00 0.00 3.62
6399 17333 2.031163 CCGGGCCTGCTACTATGC 59.969 66.667 5.85 0.00 0.00 3.14
6449 17383 3.405831 TCTCCATACGTACCAGTATCGG 58.594 50.000 0.00 0.00 35.32 4.18
6454 17388 5.934402 AGAAAATCTCCATACGTACCAGT 57.066 39.130 0.00 0.00 0.00 4.00
6465 17399 6.777091 TGAAAAGTGGATCAAGAAAATCTCCA 59.223 34.615 0.00 0.00 33.70 3.86
6579 17526 0.557729 CACCAGGGGCAGGGAATATT 59.442 55.000 0.00 0.00 0.00 1.28
6593 17544 4.036027 AGCGCAAGATTTATCAATCACCAG 59.964 41.667 11.47 0.00 41.37 4.00
6621 17572 0.107848 GGGAATGACGGATTCACGGT 60.108 55.000 10.53 0.00 42.22 4.83
6629 17580 3.262151 TGACATAAACAGGGAATGACGGA 59.738 43.478 0.00 0.00 0.00 4.69
6632 17583 5.551760 CTGTGACATAAACAGGGAATGAC 57.448 43.478 0.00 0.00 41.13 3.06
6656 17623 3.622163 TGTTCGTACTAGCTAGCAGAGTC 59.378 47.826 20.91 13.93 0.00 3.36
7017 18024 6.401394 CCACATGTCAGTTCTATCTTCTTCA 58.599 40.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.