Multiple sequence alignment - TraesCS4D01G054700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G054700 chr4D 100.000 2603 0 0 1 2603 30310987 30308385 0.000000e+00 4807.0
1 TraesCS4D01G054700 chr4D 85.268 448 49 7 8 439 16933331 16932885 1.840000e-121 446.0
2 TraesCS4D01G054700 chr4D 83.510 473 36 17 4 434 187538428 187537956 1.120000e-108 403.0
3 TraesCS4D01G054700 chr4B 89.082 1264 75 29 553 1797 43182105 43180886 0.000000e+00 1511.0
4 TraesCS4D01G054700 chr4A 85.423 1228 55 47 595 1791 572649132 572650266 0.000000e+00 1162.0
5 TraesCS4D01G054700 chr4A 81.306 444 57 12 8 439 248811114 248810685 1.150000e-88 337.0
6 TraesCS4D01G054700 chr7D 88.260 707 63 15 1911 2603 497568460 497567760 0.000000e+00 828.0
7 TraesCS4D01G054700 chr7D 97.059 34 0 1 1494 1527 74596817 74596785 3.620000e-04 56.5
8 TraesCS4D01G054700 chr5A 90.228 614 57 3 1993 2603 361708292 361707679 0.000000e+00 798.0
9 TraesCS4D01G054700 chr5B 88.331 677 62 8 1937 2601 226435116 226435787 0.000000e+00 797.0
10 TraesCS4D01G054700 chr5B 82.090 268 14 16 197 434 372839923 372840186 5.680000e-47 198.0
11 TraesCS4D01G054700 chr5B 100.000 32 0 0 1486 1517 30568686 30568717 2.800000e-05 60.2
12 TraesCS4D01G054700 chr1D 86.721 738 73 6 1888 2603 392633580 392634314 0.000000e+00 797.0
13 TraesCS4D01G054700 chr1D 97.059 34 1 0 1489 1522 17022581 17022548 1.010000e-04 58.4
14 TraesCS4D01G054700 chr5D 90.049 613 57 4 1993 2603 268626652 268626042 0.000000e+00 791.0
15 TraesCS4D01G054700 chr5D 87.025 316 39 2 8 322 26847633 26847319 3.190000e-94 355.0
16 TraesCS4D01G054700 chr5D 79.281 473 56 18 4 434 482744329 482743857 2.530000e-75 292.0
17 TraesCS4D01G054700 chr5D 77.876 113 12 4 1832 1932 476693322 476693433 1.010000e-04 58.4
18 TraesCS4D01G054700 chr5D 100.000 28 0 0 1835 1862 539470401 539470374 5.000000e-03 52.8
19 TraesCS4D01G054700 chr3D 87.011 716 72 14 1902 2603 317092914 317092206 0.000000e+00 787.0
20 TraesCS4D01G054700 chr3D 85.235 447 50 6 8 439 24291014 24290569 1.840000e-121 446.0
21 TraesCS4D01G054700 chr3D 84.375 448 53 6 8 439 24444441 24443995 8.610000e-115 424.0
22 TraesCS4D01G054700 chr3D 84.675 385 46 3 8 380 24337287 24336904 3.160000e-99 372.0
23 TraesCS4D01G054700 chr6B 87.538 666 75 8 1942 2603 159695259 159695920 0.000000e+00 763.0
24 TraesCS4D01G054700 chrUn 87.444 669 72 12 1942 2603 86406381 86405718 0.000000e+00 760.0
25 TraesCS4D01G054700 chrUn 85.459 447 46 8 10 439 26516636 26517080 5.110000e-122 448.0
26 TraesCS4D01G054700 chrUn 100.000 32 0 0 1486 1517 214804101 214804132 2.800000e-05 60.2
27 TraesCS4D01G054700 chr1A 86.455 694 82 12 1916 2603 370025456 370026143 0.000000e+00 750.0
28 TraesCS4D01G054700 chr2B 86.227 697 85 10 1911 2603 239812625 239813314 0.000000e+00 745.0
29 TraesCS4D01G054700 chr2D 87.711 415 37 3 1 402 323121828 323122241 3.030000e-129 472.0
30 TraesCS4D01G054700 chr2D 83.755 474 32 15 4 434 44922387 44921916 8.670000e-110 407.0
31 TraesCS4D01G054700 chr6D 84.919 431 54 8 8 432 29207441 29207016 2.390000e-115 425.0
32 TraesCS4D01G054700 chr6D 83.482 448 57 7 8 439 111601571 111601125 4.030000e-108 401.0
33 TraesCS4D01G054700 chr3A 82.917 480 32 24 4 434 102353701 102354179 1.130000e-103 387.0
34 TraesCS4D01G054700 chr3A 97.143 35 0 1 1489 1522 21215922 21215956 1.010000e-04 58.4
35 TraesCS4D01G054700 chr6A 100.000 30 0 0 1489 1518 9046091 9046120 3.620000e-04 56.5
36 TraesCS4D01G054700 chr2A 96.970 33 1 0 1490 1522 179283749 179283717 3.620000e-04 56.5
37 TraesCS4D01G054700 chr7A 87.500 48 5 1 1496 1543 78508022 78507976 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G054700 chr4D 30308385 30310987 2602 True 4807 4807 100.000 1 2603 1 chr4D.!!$R2 2602
1 TraesCS4D01G054700 chr4B 43180886 43182105 1219 True 1511 1511 89.082 553 1797 1 chr4B.!!$R1 1244
2 TraesCS4D01G054700 chr4A 572649132 572650266 1134 False 1162 1162 85.423 595 1791 1 chr4A.!!$F1 1196
3 TraesCS4D01G054700 chr7D 497567760 497568460 700 True 828 828 88.260 1911 2603 1 chr7D.!!$R2 692
4 TraesCS4D01G054700 chr5A 361707679 361708292 613 True 798 798 90.228 1993 2603 1 chr5A.!!$R1 610
5 TraesCS4D01G054700 chr5B 226435116 226435787 671 False 797 797 88.331 1937 2601 1 chr5B.!!$F2 664
6 TraesCS4D01G054700 chr1D 392633580 392634314 734 False 797 797 86.721 1888 2603 1 chr1D.!!$F1 715
7 TraesCS4D01G054700 chr5D 268626042 268626652 610 True 791 791 90.049 1993 2603 1 chr5D.!!$R2 610
8 TraesCS4D01G054700 chr3D 317092206 317092914 708 True 787 787 87.011 1902 2603 1 chr3D.!!$R4 701
9 TraesCS4D01G054700 chr6B 159695259 159695920 661 False 763 763 87.538 1942 2603 1 chr6B.!!$F1 661
10 TraesCS4D01G054700 chrUn 86405718 86406381 663 True 760 760 87.444 1942 2603 1 chrUn.!!$R1 661
11 TraesCS4D01G054700 chr1A 370025456 370026143 687 False 750 750 86.455 1916 2603 1 chr1A.!!$F1 687
12 TraesCS4D01G054700 chr2B 239812625 239813314 689 False 745 745 86.227 1911 2603 1 chr2B.!!$F1 692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 550 0.029567 GAGCAATCGATCGAGACGGT 59.97 55.0 23.84 18.09 0.0 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1958 2042 0.107165 GAAAATAGAGGCCAGCCGGT 60.107 55.0 5.01 0.0 41.95 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.660206 CGACCGGATCCAACACCA 59.340 61.111 9.46 0.00 0.00 4.17
18 19 1.740296 CGACCGGATCCAACACCAC 60.740 63.158 9.46 0.00 0.00 4.16
19 20 1.373435 GACCGGATCCAACACCACA 59.627 57.895 9.46 0.00 0.00 4.17
20 21 0.673644 GACCGGATCCAACACCACAG 60.674 60.000 9.46 0.00 0.00 3.66
21 22 1.125093 ACCGGATCCAACACCACAGA 61.125 55.000 9.46 0.00 0.00 3.41
22 23 0.391661 CCGGATCCAACACCACAGAG 60.392 60.000 13.41 0.00 0.00 3.35
23 24 0.391661 CGGATCCAACACCACAGAGG 60.392 60.000 13.41 0.00 45.67 3.69
24 25 0.984230 GGATCCAACACCACAGAGGA 59.016 55.000 6.95 0.00 41.22 3.71
25 26 1.351017 GGATCCAACACCACAGAGGAA 59.649 52.381 6.95 0.00 41.22 3.36
26 27 2.616510 GGATCCAACACCACAGAGGAAG 60.617 54.545 6.95 0.00 41.22 3.46
27 28 0.764890 TCCAACACCACAGAGGAAGG 59.235 55.000 0.00 0.00 41.22 3.46
28 29 0.250901 CCAACACCACAGAGGAAGGG 60.251 60.000 0.00 0.00 41.22 3.95
29 30 0.250901 CAACACCACAGAGGAAGGGG 60.251 60.000 0.00 0.00 41.22 4.79
30 31 1.427072 AACACCACAGAGGAAGGGGG 61.427 60.000 0.00 0.00 41.22 5.40
31 32 1.538876 CACCACAGAGGAAGGGGGA 60.539 63.158 0.00 0.00 41.22 4.81
32 33 1.229658 ACCACAGAGGAAGGGGGAG 60.230 63.158 0.00 0.00 41.22 4.30
33 34 1.997874 CCACAGAGGAAGGGGGAGG 60.998 68.421 0.00 0.00 41.22 4.30
34 35 1.081092 CACAGAGGAAGGGGGAGGA 59.919 63.158 0.00 0.00 0.00 3.71
35 36 1.081277 ACAGAGGAAGGGGGAGGAC 59.919 63.158 0.00 0.00 0.00 3.85
36 37 1.690985 CAGAGGAAGGGGGAGGACC 60.691 68.421 0.00 0.00 39.11 4.46
37 38 2.764547 GAGGAAGGGGGAGGACCG 60.765 72.222 0.00 0.00 41.60 4.79
38 39 3.281787 AGGAAGGGGGAGGACCGA 61.282 66.667 0.00 0.00 41.60 4.69
39 40 2.764547 GGAAGGGGGAGGACCGAG 60.765 72.222 0.00 0.00 41.60 4.63
40 41 2.764547 GAAGGGGGAGGACCGAGG 60.765 72.222 0.00 0.00 41.60 4.63
41 42 3.281787 AAGGGGGAGGACCGAGGA 61.282 66.667 0.00 0.00 41.60 3.71
42 43 3.318922 AAGGGGGAGGACCGAGGAG 62.319 68.421 0.00 0.00 41.60 3.69
43 44 3.752167 GGGGGAGGACCGAGGAGA 61.752 72.222 0.00 0.00 41.60 3.71
44 45 2.442458 GGGGAGGACCGAGGAGAC 60.442 72.222 0.00 0.00 41.60 3.36
45 46 2.442458 GGGAGGACCGAGGAGACC 60.442 72.222 0.00 0.00 36.97 3.85
46 47 2.359404 GGAGGACCGAGGAGACCA 59.641 66.667 0.00 0.00 0.00 4.02
47 48 2.053277 GGAGGACCGAGGAGACCAC 61.053 68.421 0.00 0.00 0.00 4.16
48 49 2.361357 AGGACCGAGGAGACCACG 60.361 66.667 0.00 0.00 0.00 4.94
49 50 2.360852 GGACCGAGGAGACCACGA 60.361 66.667 8.95 0.00 33.53 4.35
50 51 1.753463 GGACCGAGGAGACCACGAT 60.753 63.158 8.95 0.00 33.53 3.73
51 52 1.726533 GGACCGAGGAGACCACGATC 61.727 65.000 8.95 1.61 33.53 3.69
52 53 2.049475 GACCGAGGAGACCACGATCG 62.049 65.000 14.88 14.88 33.53 3.69
53 54 2.716244 CGAGGAGACCACGATCGG 59.284 66.667 20.98 8.32 33.53 4.18
54 55 2.835705 CGAGGAGACCACGATCGGG 61.836 68.421 20.98 16.53 33.53 5.14
55 56 2.442272 AGGAGACCACGATCGGGG 60.442 66.667 34.47 34.47 46.10 5.73
56 57 3.537874 GGAGACCACGATCGGGGG 61.538 72.222 37.95 29.36 44.61 5.40
57 58 2.441532 GAGACCACGATCGGGGGA 60.442 66.667 37.95 0.00 44.61 4.81
58 59 2.038329 AGACCACGATCGGGGGAA 59.962 61.111 37.95 0.00 44.61 3.97
59 60 2.017559 GAGACCACGATCGGGGGAAG 62.018 65.000 37.95 15.40 44.61 3.46
60 61 3.081409 ACCACGATCGGGGGAAGG 61.081 66.667 37.95 20.93 44.61 3.46
61 62 2.762459 CCACGATCGGGGGAAGGA 60.762 66.667 29.33 0.00 34.36 3.36
62 63 2.797278 CCACGATCGGGGGAAGGAG 61.797 68.421 29.33 0.05 34.36 3.69
63 64 3.155167 ACGATCGGGGGAAGGAGC 61.155 66.667 20.98 0.00 0.00 4.70
64 65 3.930012 CGATCGGGGGAAGGAGCC 61.930 72.222 7.38 0.00 0.00 4.70
65 66 3.930012 GATCGGGGGAAGGAGCCG 61.930 72.222 0.00 0.00 0.00 5.52
86 87 4.580551 CCCGACCCGCCATACGTC 62.581 72.222 0.00 0.00 41.42 4.34
87 88 4.918129 CCGACCCGCCATACGTCG 62.918 72.222 0.00 2.01 46.79 5.12
88 89 4.918129 CGACCCGCCATACGTCGG 62.918 72.222 6.44 6.44 44.26 4.79
94 95 4.865761 GCCATACGTCGGCGCTGA 62.866 66.667 16.69 16.69 40.35 4.26
95 96 2.954868 CCATACGTCGGCGCTGAC 60.955 66.667 34.54 34.54 42.83 3.51
96 97 2.954868 CATACGTCGGCGCTGACC 60.955 66.667 36.76 22.25 42.83 4.02
97 98 3.445687 ATACGTCGGCGCTGACCA 61.446 61.111 36.76 27.12 42.83 4.02
98 99 2.997075 ATACGTCGGCGCTGACCAA 61.997 57.895 36.76 27.07 42.83 3.67
99 100 3.902162 TACGTCGGCGCTGACCAAC 62.902 63.158 36.76 18.32 42.83 3.77
106 107 4.505217 CGCTGACCAACGCGCATC 62.505 66.667 5.73 0.00 43.01 3.91
107 108 4.166011 GCTGACCAACGCGCATCC 62.166 66.667 5.73 0.00 0.00 3.51
108 109 2.741985 CTGACCAACGCGCATCCA 60.742 61.111 5.73 0.00 0.00 3.41
109 110 3.027170 CTGACCAACGCGCATCCAC 62.027 63.158 5.73 0.00 0.00 4.02
110 111 3.799755 GACCAACGCGCATCCACC 61.800 66.667 5.73 0.00 0.00 4.61
118 119 4.444838 CGCATCCACCCCGACGAA 62.445 66.667 0.00 0.00 0.00 3.85
119 120 2.818274 GCATCCACCCCGACGAAC 60.818 66.667 0.00 0.00 0.00 3.95
120 121 2.125269 CATCCACCCCGACGAACC 60.125 66.667 0.00 0.00 0.00 3.62
121 122 2.605295 ATCCACCCCGACGAACCA 60.605 61.111 0.00 0.00 0.00 3.67
122 123 2.656069 ATCCACCCCGACGAACCAG 61.656 63.158 0.00 0.00 0.00 4.00
123 124 3.307906 CCACCCCGACGAACCAGA 61.308 66.667 0.00 0.00 0.00 3.86
124 125 2.738480 CACCCCGACGAACCAGAA 59.262 61.111 0.00 0.00 0.00 3.02
125 126 1.374252 CACCCCGACGAACCAGAAG 60.374 63.158 0.00 0.00 0.00 2.85
126 127 2.264794 CCCCGACGAACCAGAAGG 59.735 66.667 0.00 0.00 42.21 3.46
127 128 2.434359 CCCGACGAACCAGAAGGC 60.434 66.667 0.00 0.00 39.06 4.35
128 129 2.342279 CCGACGAACCAGAAGGCA 59.658 61.111 0.00 0.00 39.06 4.75
129 130 2.027625 CCGACGAACCAGAAGGCAC 61.028 63.158 0.00 0.00 39.06 5.01
130 131 2.027625 CGACGAACCAGAAGGCACC 61.028 63.158 0.00 0.00 39.06 5.01
131 132 2.027625 GACGAACCAGAAGGCACCG 61.028 63.158 0.00 0.00 39.06 4.94
132 133 2.342279 CGAACCAGAAGGCACCGA 59.658 61.111 0.00 0.00 39.06 4.69
133 134 2.027625 CGAACCAGAAGGCACCGAC 61.028 63.158 0.00 0.00 39.06 4.79
134 135 1.070786 GAACCAGAAGGCACCGACA 59.929 57.895 0.00 0.00 39.06 4.35
135 136 1.227853 AACCAGAAGGCACCGACAC 60.228 57.895 0.00 0.00 39.06 3.67
136 137 2.358737 CCAGAAGGCACCGACACC 60.359 66.667 0.00 0.00 0.00 4.16
137 138 2.738521 CAGAAGGCACCGACACCG 60.739 66.667 0.00 0.00 0.00 4.94
164 165 2.679996 GGCCACCCGGAGCAAATT 60.680 61.111 0.73 0.00 0.00 1.82
165 166 2.282783 GGCCACCCGGAGCAAATTT 61.283 57.895 0.73 0.00 0.00 1.82
166 167 1.215382 GCCACCCGGAGCAAATTTC 59.785 57.895 0.73 0.00 0.00 2.17
167 168 1.890174 CCACCCGGAGCAAATTTCC 59.110 57.895 0.73 0.00 0.00 3.13
172 173 2.489751 GGAGCAAATTTCCGGGCG 59.510 61.111 0.00 0.00 0.00 6.13
173 174 2.340328 GGAGCAAATTTCCGGGCGT 61.340 57.895 0.00 0.00 0.00 5.68
174 175 1.154035 GAGCAAATTTCCGGGCGTG 60.154 57.895 0.00 0.00 0.00 5.34
175 176 2.126110 GCAAATTTCCGGGCGTGG 60.126 61.111 0.00 0.00 0.00 4.94
176 177 2.126110 CAAATTTCCGGGCGTGGC 60.126 61.111 0.00 0.00 0.00 5.01
224 225 2.496817 GAGCGCACTCCTCCGAAT 59.503 61.111 11.47 0.00 36.90 3.34
225 226 1.590259 GAGCGCACTCCTCCGAATC 60.590 63.158 11.47 0.00 36.90 2.52
226 227 2.184322 GCGCACTCCTCCGAATCA 59.816 61.111 0.30 0.00 0.00 2.57
227 228 1.880340 GCGCACTCCTCCGAATCAG 60.880 63.158 0.30 0.00 0.00 2.90
228 229 1.809869 CGCACTCCTCCGAATCAGA 59.190 57.895 0.00 0.00 0.00 3.27
229 230 0.248825 CGCACTCCTCCGAATCAGAG 60.249 60.000 0.00 0.00 0.00 3.35
230 231 0.820871 GCACTCCTCCGAATCAGAGT 59.179 55.000 0.00 0.00 40.15 3.24
231 232 1.202359 GCACTCCTCCGAATCAGAGTC 60.202 57.143 0.00 0.00 37.48 3.36
232 233 1.407258 CACTCCTCCGAATCAGAGTCC 59.593 57.143 0.00 0.00 37.48 3.85
233 234 0.665835 CTCCTCCGAATCAGAGTCCG 59.334 60.000 0.00 0.00 0.00 4.79
234 235 0.255033 TCCTCCGAATCAGAGTCCGA 59.745 55.000 0.00 0.00 0.00 4.55
235 236 0.382515 CCTCCGAATCAGAGTCCGAC 59.617 60.000 0.00 0.00 0.00 4.79
236 237 1.384525 CTCCGAATCAGAGTCCGACT 58.615 55.000 0.00 0.00 0.00 4.18
237 238 1.332375 CTCCGAATCAGAGTCCGACTC 59.668 57.143 19.26 19.26 45.38 3.36
238 239 0.382515 CCGAATCAGAGTCCGACTCC 59.617 60.000 22.46 8.04 46.18 3.85
239 240 1.384525 CGAATCAGAGTCCGACTCCT 58.615 55.000 22.46 9.27 46.18 3.69
240 241 1.332375 CGAATCAGAGTCCGACTCCTC 59.668 57.143 22.46 13.76 46.18 3.71
241 242 1.679153 GAATCAGAGTCCGACTCCTCC 59.321 57.143 22.46 6.60 46.18 4.30
242 243 0.626382 ATCAGAGTCCGACTCCTCCA 59.374 55.000 22.46 6.82 46.18 3.86
243 244 0.626382 TCAGAGTCCGACTCCTCCAT 59.374 55.000 22.46 3.40 46.18 3.41
244 245 0.743688 CAGAGTCCGACTCCTCCATG 59.256 60.000 22.46 11.63 46.18 3.66
245 246 0.333312 AGAGTCCGACTCCTCCATGT 59.667 55.000 22.46 2.00 46.18 3.21
246 247 0.741915 GAGTCCGACTCCTCCATGTC 59.258 60.000 16.58 0.00 39.28 3.06
249 250 2.105128 CGACTCCTCCATGTCGCC 59.895 66.667 2.69 0.00 46.94 5.54
250 251 2.501610 GACTCCTCCATGTCGCCC 59.498 66.667 0.00 0.00 0.00 6.13
251 252 2.284625 ACTCCTCCATGTCGCCCA 60.285 61.111 0.00 0.00 0.00 5.36
252 253 1.899437 GACTCCTCCATGTCGCCCAA 61.899 60.000 0.00 0.00 0.00 4.12
253 254 1.450312 CTCCTCCATGTCGCCCAAC 60.450 63.158 0.00 0.00 0.00 3.77
254 255 2.819595 CCTCCATGTCGCCCAACG 60.820 66.667 0.00 0.00 45.62 4.10
255 256 3.499737 CTCCATGTCGCCCAACGC 61.500 66.667 0.00 0.00 43.23 4.84
258 259 2.125310 CATGTCGCCCAACGCCTA 60.125 61.111 0.00 0.00 43.23 3.93
259 260 2.173669 CATGTCGCCCAACGCCTAG 61.174 63.158 0.00 0.00 43.23 3.02
260 261 2.355986 ATGTCGCCCAACGCCTAGA 61.356 57.895 0.00 0.00 43.23 2.43
261 262 1.895020 ATGTCGCCCAACGCCTAGAA 61.895 55.000 0.00 0.00 43.23 2.10
262 263 1.375013 GTCGCCCAACGCCTAGAAA 60.375 57.895 0.00 0.00 43.23 2.52
263 264 1.375013 TCGCCCAACGCCTAGAAAC 60.375 57.895 0.00 0.00 43.23 2.78
264 265 2.736682 CGCCCAACGCCTAGAAACG 61.737 63.158 0.00 0.00 33.16 3.60
265 266 3.035576 GCCCAACGCCTAGAAACGC 62.036 63.158 0.00 0.00 0.00 4.84
271 272 3.389206 GCCTAGAAACGCGAGCTG 58.611 61.111 15.93 0.00 0.00 4.24
272 273 2.167861 GCCTAGAAACGCGAGCTGG 61.168 63.158 15.93 8.56 0.00 4.85
273 274 1.519455 CCTAGAAACGCGAGCTGGG 60.519 63.158 15.93 14.11 0.00 4.45
274 275 1.519455 CTAGAAACGCGAGCTGGGG 60.519 63.158 15.93 11.31 34.15 4.96
275 276 1.945354 CTAGAAACGCGAGCTGGGGA 61.945 60.000 19.55 0.00 34.15 4.81
276 277 1.537814 TAGAAACGCGAGCTGGGGAA 61.538 55.000 19.55 0.00 34.15 3.97
277 278 2.358737 AAACGCGAGCTGGGGAAG 60.359 61.111 19.55 0.00 34.15 3.46
278 279 3.901797 AAACGCGAGCTGGGGAAGG 62.902 63.158 19.55 0.00 34.15 3.46
280 281 4.821589 CGCGAGCTGGGGAAGGAC 62.822 72.222 6.99 0.00 0.00 3.85
281 282 4.821589 GCGAGCTGGGGAAGGACG 62.822 72.222 0.00 0.00 0.00 4.79
282 283 4.821589 CGAGCTGGGGAAGGACGC 62.822 72.222 0.00 0.00 0.00 5.19
291 292 4.415332 GAAGGACGCCGACGCAGA 62.415 66.667 0.00 0.00 45.53 4.26
292 293 4.421479 AAGGACGCCGACGCAGAG 62.421 66.667 0.00 0.00 45.53 3.35
295 296 4.838486 GACGCCGACGCAGAGGAG 62.838 72.222 0.00 0.00 45.53 3.69
298 299 4.742201 GCCGACGCAGAGGAGCAA 62.742 66.667 0.00 0.00 34.03 3.91
299 300 2.507992 CCGACGCAGAGGAGCAAG 60.508 66.667 0.00 0.00 0.00 4.01
300 301 2.507992 CGACGCAGAGGAGCAAGG 60.508 66.667 0.00 0.00 0.00 3.61
301 302 2.973899 GACGCAGAGGAGCAAGGA 59.026 61.111 0.00 0.00 0.00 3.36
302 303 1.153667 GACGCAGAGGAGCAAGGAG 60.154 63.158 0.00 0.00 0.00 3.69
303 304 1.599606 GACGCAGAGGAGCAAGGAGA 61.600 60.000 0.00 0.00 0.00 3.71
304 305 1.141449 CGCAGAGGAGCAAGGAGAG 59.859 63.158 0.00 0.00 0.00 3.20
305 306 1.153389 GCAGAGGAGCAAGGAGAGC 60.153 63.158 0.00 0.00 0.00 4.09
306 307 1.521616 CAGAGGAGCAAGGAGAGCC 59.478 63.158 0.00 0.00 0.00 4.70
307 308 2.057408 AGAGGAGCAAGGAGAGCCG 61.057 63.158 0.00 0.00 39.96 5.52
308 309 2.038007 AGGAGCAAGGAGAGCCGA 59.962 61.111 0.00 0.00 39.96 5.54
309 310 2.185608 GGAGCAAGGAGAGCCGAC 59.814 66.667 0.00 0.00 39.96 4.79
310 311 2.185608 GAGCAAGGAGAGCCGACC 59.814 66.667 0.00 0.00 39.96 4.79
311 312 3.378399 GAGCAAGGAGAGCCGACCC 62.378 68.421 0.00 0.00 39.96 4.46
312 313 4.821589 GCAAGGAGAGCCGACCCG 62.822 72.222 0.00 0.00 39.96 5.28
313 314 4.821589 CAAGGAGAGCCGACCCGC 62.822 72.222 0.00 0.00 39.96 6.13
351 352 3.148279 CGACGGGAGGGAGGGAAG 61.148 72.222 0.00 0.00 0.00 3.46
352 353 2.764547 GACGGGAGGGAGGGAAGG 60.765 72.222 0.00 0.00 0.00 3.46
353 354 4.416601 ACGGGAGGGAGGGAAGGG 62.417 72.222 0.00 0.00 0.00 3.95
396 397 4.760220 GGCAGGGGAGGAGGGGAA 62.760 72.222 0.00 0.00 0.00 3.97
397 398 3.412408 GCAGGGGAGGAGGGGAAC 61.412 72.222 0.00 0.00 0.00 3.62
398 399 3.083997 CAGGGGAGGAGGGGAACG 61.084 72.222 0.00 0.00 0.00 3.95
399 400 4.416601 AGGGGAGGAGGGGAACGG 62.417 72.222 0.00 0.00 0.00 4.44
402 403 4.410033 GGAGGAGGGGAACGGGGA 62.410 72.222 0.00 0.00 0.00 4.81
403 404 2.764547 GAGGAGGGGAACGGGGAG 60.765 72.222 0.00 0.00 0.00 4.30
406 407 3.787001 GAGGGGAACGGGGAGCAG 61.787 72.222 0.00 0.00 0.00 4.24
424 425 4.798682 GGGGGCGAAGGGAGAGGA 62.799 72.222 0.00 0.00 0.00 3.71
425 426 3.157949 GGGGCGAAGGGAGAGGAG 61.158 72.222 0.00 0.00 0.00 3.69
426 427 3.157949 GGGCGAAGGGAGAGGAGG 61.158 72.222 0.00 0.00 0.00 4.30
427 428 3.157949 GGCGAAGGGAGAGGAGGG 61.158 72.222 0.00 0.00 0.00 4.30
428 429 2.042843 GCGAAGGGAGAGGAGGGA 60.043 66.667 0.00 0.00 0.00 4.20
429 430 2.131067 GCGAAGGGAGAGGAGGGAG 61.131 68.421 0.00 0.00 0.00 4.30
430 431 1.615814 CGAAGGGAGAGGAGGGAGA 59.384 63.158 0.00 0.00 0.00 3.71
431 432 0.467290 CGAAGGGAGAGGAGGGAGAG 60.467 65.000 0.00 0.00 0.00 3.20
432 433 0.105709 GAAGGGAGAGGAGGGAGAGG 60.106 65.000 0.00 0.00 0.00 3.69
433 434 0.556380 AAGGGAGAGGAGGGAGAGGA 60.556 60.000 0.00 0.00 0.00 3.71
434 435 1.231928 GGGAGAGGAGGGAGAGGAC 59.768 68.421 0.00 0.00 0.00 3.85
435 436 1.231928 GGAGAGGAGGGAGAGGACC 59.768 68.421 0.00 0.00 0.00 4.46
450 451 7.277174 GGAGAGGACCCATTATAATTTGTTG 57.723 40.000 0.00 0.00 0.00 3.33
451 452 7.060421 GGAGAGGACCCATTATAATTTGTTGA 58.940 38.462 0.00 0.00 0.00 3.18
452 453 7.229506 GGAGAGGACCCATTATAATTTGTTGAG 59.770 40.741 0.00 0.00 0.00 3.02
453 454 7.643123 AGAGGACCCATTATAATTTGTTGAGT 58.357 34.615 0.00 0.00 0.00 3.41
454 455 8.116026 AGAGGACCCATTATAATTTGTTGAGTT 58.884 33.333 0.00 0.00 0.00 3.01
455 456 8.664669 AGGACCCATTATAATTTGTTGAGTTT 57.335 30.769 0.00 0.00 0.00 2.66
456 457 8.749354 AGGACCCATTATAATTTGTTGAGTTTC 58.251 33.333 0.00 0.00 0.00 2.78
457 458 8.749354 GGACCCATTATAATTTGTTGAGTTTCT 58.251 33.333 0.00 0.00 0.00 2.52
465 466 6.667007 AATTTGTTGAGTTTCTTTTGGCTG 57.333 33.333 0.00 0.00 0.00 4.85
466 467 4.799564 TTGTTGAGTTTCTTTTGGCTGT 57.200 36.364 0.00 0.00 0.00 4.40
467 468 4.108699 TGTTGAGTTTCTTTTGGCTGTG 57.891 40.909 0.00 0.00 0.00 3.66
468 469 3.509575 TGTTGAGTTTCTTTTGGCTGTGT 59.490 39.130 0.00 0.00 0.00 3.72
469 470 4.702612 TGTTGAGTTTCTTTTGGCTGTGTA 59.297 37.500 0.00 0.00 0.00 2.90
470 471 5.163663 TGTTGAGTTTCTTTTGGCTGTGTAG 60.164 40.000 0.00 0.00 0.00 2.74
471 472 4.523083 TGAGTTTCTTTTGGCTGTGTAGT 58.477 39.130 0.00 0.00 0.00 2.73
472 473 4.335315 TGAGTTTCTTTTGGCTGTGTAGTG 59.665 41.667 0.00 0.00 0.00 2.74
473 474 3.066760 AGTTTCTTTTGGCTGTGTAGTGC 59.933 43.478 0.00 0.00 0.00 4.40
474 475 2.340210 TCTTTTGGCTGTGTAGTGCA 57.660 45.000 0.00 0.00 0.00 4.57
484 485 1.512926 GTGTAGTGCACTGAACCTGG 58.487 55.000 29.57 0.00 44.41 4.45
485 486 1.128200 TGTAGTGCACTGAACCTGGT 58.872 50.000 29.57 1.79 0.00 4.00
486 487 1.202639 TGTAGTGCACTGAACCTGGTG 60.203 52.381 29.57 0.00 36.62 4.17
487 488 1.128200 TAGTGCACTGAACCTGGTGT 58.872 50.000 29.57 0.40 36.03 4.16
488 489 0.255890 AGTGCACTGAACCTGGTGTT 59.744 50.000 20.97 0.00 40.81 3.32
489 490 0.381801 GTGCACTGAACCTGGTGTTG 59.618 55.000 10.32 0.00 37.29 3.33
490 491 0.034574 TGCACTGAACCTGGTGTTGT 60.035 50.000 0.00 0.00 37.29 3.32
491 492 1.210722 TGCACTGAACCTGGTGTTGTA 59.789 47.619 0.00 0.00 37.29 2.41
492 493 1.602377 GCACTGAACCTGGTGTTGTAC 59.398 52.381 0.00 0.00 37.29 2.90
493 494 2.912771 CACTGAACCTGGTGTTGTACA 58.087 47.619 0.00 0.00 37.29 2.90
494 495 3.476552 CACTGAACCTGGTGTTGTACAT 58.523 45.455 0.00 0.00 37.29 2.29
495 496 3.498397 CACTGAACCTGGTGTTGTACATC 59.502 47.826 0.00 0.00 37.29 3.06
496 497 3.074412 CTGAACCTGGTGTTGTACATCC 58.926 50.000 0.00 0.76 37.29 3.51
497 498 2.708861 TGAACCTGGTGTTGTACATCCT 59.291 45.455 0.00 0.00 37.29 3.24
498 499 3.244422 TGAACCTGGTGTTGTACATCCTC 60.244 47.826 0.00 0.00 37.29 3.71
499 500 2.621070 ACCTGGTGTTGTACATCCTCT 58.379 47.619 0.00 0.00 0.00 3.69
500 501 2.303022 ACCTGGTGTTGTACATCCTCTG 59.697 50.000 0.00 0.00 0.00 3.35
501 502 2.303022 CCTGGTGTTGTACATCCTCTGT 59.697 50.000 0.00 0.00 42.13 3.41
502 503 3.329386 CTGGTGTTGTACATCCTCTGTG 58.671 50.000 0.00 0.00 38.92 3.66
503 504 2.038426 TGGTGTTGTACATCCTCTGTGG 59.962 50.000 0.00 0.00 38.92 4.17
512 513 3.289797 TCCTCTGTGGAAGATCGCT 57.710 52.632 0.00 0.00 42.94 4.93
513 514 1.107114 TCCTCTGTGGAAGATCGCTC 58.893 55.000 0.00 0.00 42.94 5.03
514 515 0.820226 CCTCTGTGGAAGATCGCTCA 59.180 55.000 0.00 0.00 38.35 4.26
515 516 1.205655 CCTCTGTGGAAGATCGCTCAA 59.794 52.381 0.00 0.00 38.35 3.02
516 517 2.354103 CCTCTGTGGAAGATCGCTCAAA 60.354 50.000 0.00 0.00 38.35 2.69
517 518 3.329386 CTCTGTGGAAGATCGCTCAAAA 58.671 45.455 0.00 0.00 33.29 2.44
518 519 3.738982 TCTGTGGAAGATCGCTCAAAAA 58.261 40.909 0.00 0.00 0.00 1.94
539 540 5.514274 AAAAGGTGAAAAAGAGCAATCGA 57.486 34.783 0.00 0.00 0.00 3.59
540 541 5.712152 AAAGGTGAAAAAGAGCAATCGAT 57.288 34.783 0.00 0.00 0.00 3.59
541 542 4.954092 AGGTGAAAAAGAGCAATCGATC 57.046 40.909 0.00 0.00 0.00 3.69
542 543 3.372206 AGGTGAAAAAGAGCAATCGATCG 59.628 43.478 9.36 9.36 30.99 3.69
543 544 3.370978 GGTGAAAAAGAGCAATCGATCGA 59.629 43.478 21.86 21.86 30.99 3.59
544 545 4.493220 GGTGAAAAAGAGCAATCGATCGAG 60.493 45.833 23.84 11.87 30.99 4.04
545 546 4.327357 GTGAAAAAGAGCAATCGATCGAGA 59.673 41.667 23.84 0.68 30.99 4.04
546 547 4.327357 TGAAAAAGAGCAATCGATCGAGAC 59.673 41.667 23.84 14.48 30.99 3.36
547 548 2.112475 AAGAGCAATCGATCGAGACG 57.888 50.000 23.84 14.46 30.99 4.18
548 549 0.309302 AGAGCAATCGATCGAGACGG 59.691 55.000 23.84 12.93 30.99 4.79
549 550 0.029567 GAGCAATCGATCGAGACGGT 59.970 55.000 23.84 18.09 0.00 4.83
550 551 0.456221 AGCAATCGATCGAGACGGTT 59.544 50.000 23.84 9.50 34.35 4.44
551 552 1.135083 AGCAATCGATCGAGACGGTTT 60.135 47.619 23.84 8.74 31.63 3.27
552 553 2.098607 AGCAATCGATCGAGACGGTTTA 59.901 45.455 23.84 0.00 31.63 2.01
553 554 2.855963 GCAATCGATCGAGACGGTTTAA 59.144 45.455 23.84 0.00 31.63 1.52
554 555 3.061139 GCAATCGATCGAGACGGTTTAAG 60.061 47.826 23.84 2.37 31.63 1.85
555 556 4.348656 CAATCGATCGAGACGGTTTAAGA 58.651 43.478 23.84 0.00 31.63 2.10
556 557 4.627611 ATCGATCGAGACGGTTTAAGAA 57.372 40.909 23.84 0.00 0.00 2.52
557 558 4.424061 TCGATCGAGACGGTTTAAGAAA 57.576 40.909 15.15 0.00 0.00 2.52
564 565 5.407387 TCGAGACGGTTTAAGAAAATTGAGG 59.593 40.000 0.00 0.00 0.00 3.86
859 881 2.305343 GCTCTGCTTCATCCTCCCATAT 59.695 50.000 0.00 0.00 0.00 1.78
860 882 3.619487 GCTCTGCTTCATCCTCCCATATC 60.619 52.174 0.00 0.00 0.00 1.63
861 883 2.564504 TCTGCTTCATCCTCCCATATCG 59.435 50.000 0.00 0.00 0.00 2.92
862 884 2.564504 CTGCTTCATCCTCCCATATCGA 59.435 50.000 0.00 0.00 0.00 3.59
863 885 2.972021 TGCTTCATCCTCCCATATCGAA 59.028 45.455 0.00 0.00 0.00 3.71
864 886 3.390967 TGCTTCATCCTCCCATATCGAAA 59.609 43.478 0.00 0.00 0.00 3.46
865 887 3.748568 GCTTCATCCTCCCATATCGAAAC 59.251 47.826 0.00 0.00 0.00 2.78
866 888 4.319177 CTTCATCCTCCCATATCGAAACC 58.681 47.826 0.00 0.00 0.00 3.27
867 889 3.587498 TCATCCTCCCATATCGAAACCT 58.413 45.455 0.00 0.00 0.00 3.50
868 890 3.324846 TCATCCTCCCATATCGAAACCTG 59.675 47.826 0.00 0.00 0.00 4.00
869 891 1.416401 TCCTCCCATATCGAAACCTGC 59.584 52.381 0.00 0.00 0.00 4.85
870 892 1.543429 CCTCCCATATCGAAACCTGCC 60.543 57.143 0.00 0.00 0.00 4.85
871 893 0.472471 TCCCATATCGAAACCTGCCC 59.528 55.000 0.00 0.00 0.00 5.36
872 894 0.182537 CCCATATCGAAACCTGCCCA 59.817 55.000 0.00 0.00 0.00 5.36
873 895 1.202927 CCCATATCGAAACCTGCCCAT 60.203 52.381 0.00 0.00 0.00 4.00
874 896 2.039746 CCCATATCGAAACCTGCCCATA 59.960 50.000 0.00 0.00 0.00 2.74
875 897 3.338249 CCATATCGAAACCTGCCCATAG 58.662 50.000 0.00 0.00 0.00 2.23
876 898 2.543777 TATCGAAACCTGCCCATAGC 57.456 50.000 0.00 0.00 44.14 2.97
888 910 2.196925 CCATAGCCCGTCTCGCTCT 61.197 63.158 0.00 0.00 37.79 4.09
889 911 1.284408 CATAGCCCGTCTCGCTCTC 59.716 63.158 0.00 0.00 37.79 3.20
913 935 1.601166 AAGTTTATAATCCCGGCGCC 58.399 50.000 19.07 19.07 0.00 6.53
914 936 0.601841 AGTTTATAATCCCGGCGCCG 60.602 55.000 41.00 41.00 39.44 6.46
944 971 2.884639 GAGAGATAGAGAGAGGGTGCAC 59.115 54.545 8.80 8.80 0.00 4.57
960 987 1.908065 GCACCGTGCATGGTTTAATC 58.092 50.000 28.34 10.96 44.26 1.75
1026 1059 0.395862 TCCTGGATCACTCGGAGGAC 60.396 60.000 10.23 0.00 29.82 3.85
1183 1228 2.517402 CGTCGGAGGAGGAGGAGG 60.517 72.222 0.00 0.00 0.00 4.30
1452 1503 2.035155 TCCAAGAGCTCCGACGGA 59.965 61.111 17.28 17.28 0.00 4.69
1465 1516 1.305046 GACGGAGACAAGGAGGGGA 60.305 63.158 0.00 0.00 0.00 4.81
1484 1541 3.635433 TCGACGGCGATAAGGAAAG 57.365 52.632 10.67 0.00 42.51 2.62
1486 1543 0.874607 CGACGGCGATAAGGAAAGGG 60.875 60.000 16.62 0.00 40.82 3.95
1487 1544 0.177373 GACGGCGATAAGGAAAGGGT 59.823 55.000 16.62 0.00 0.00 4.34
1488 1545 0.177373 ACGGCGATAAGGAAAGGGTC 59.823 55.000 16.62 0.00 0.00 4.46
1489 1546 0.874607 CGGCGATAAGGAAAGGGTCG 60.875 60.000 0.00 0.00 35.56 4.79
1490 1547 0.462789 GGCGATAAGGAAAGGGTCGA 59.537 55.000 0.00 0.00 34.46 4.20
1491 1548 1.568606 GCGATAAGGAAAGGGTCGAC 58.431 55.000 7.13 7.13 34.46 4.20
1492 1549 1.836383 CGATAAGGAAAGGGTCGACG 58.164 55.000 9.92 0.00 34.46 5.12
1493 1550 1.535437 CGATAAGGAAAGGGTCGACGG 60.535 57.143 9.92 0.00 34.46 4.79
1494 1551 0.177373 ATAAGGAAAGGGTCGACGGC 59.823 55.000 9.92 0.00 0.00 5.68
1495 1552 2.216750 TAAGGAAAGGGTCGACGGCG 62.217 60.000 2.87 2.87 39.35 6.46
1496 1553 4.060038 GGAAAGGGTCGACGGCGA 62.060 66.667 10.67 10.67 45.71 5.54
1668 1749 3.501062 TCTTCGTTGATCGTACTGTGTCT 59.499 43.478 0.00 0.00 40.80 3.41
1669 1750 3.197434 TCGTTGATCGTACTGTGTCTG 57.803 47.619 0.00 0.00 40.80 3.51
1736 1817 2.596452 GTCTTCGCTGATCTTGTTCGA 58.404 47.619 0.00 0.00 0.00 3.71
1759 1840 4.405680 AGTTTGTTTCCTTTCCCTTTCCTG 59.594 41.667 0.00 0.00 0.00 3.86
1763 1844 1.827792 TCCTTTCCCTTTCCTGGTGA 58.172 50.000 0.00 0.00 0.00 4.02
1786 1870 1.949525 TCGATGTCGATGATGAGCAGA 59.050 47.619 0.21 0.00 44.22 4.26
1817 1901 8.700439 GAGTATTTCTCTTATCCACTACTCCT 57.300 38.462 0.00 0.00 39.86 3.69
1818 1902 9.138596 GAGTATTTCTCTTATCCACTACTCCTT 57.861 37.037 0.00 0.00 39.86 3.36
1819 1903 9.138596 AGTATTTCTCTTATCCACTACTCCTTC 57.861 37.037 0.00 0.00 0.00 3.46
1820 1904 6.452494 TTTCTCTTATCCACTACTCCTTCG 57.548 41.667 0.00 0.00 0.00 3.79
1821 1905 4.462133 TCTCTTATCCACTACTCCTTCGG 58.538 47.826 0.00 0.00 0.00 4.30
1822 1906 4.079901 TCTCTTATCCACTACTCCTTCGGT 60.080 45.833 0.00 0.00 0.00 4.69
1823 1907 4.205587 TCTTATCCACTACTCCTTCGGTC 58.794 47.826 0.00 0.00 0.00 4.79
1824 1908 2.830651 ATCCACTACTCCTTCGGTCT 57.169 50.000 0.00 0.00 0.00 3.85
1825 1909 2.125773 TCCACTACTCCTTCGGTCTC 57.874 55.000 0.00 0.00 0.00 3.36
1826 1910 1.353358 TCCACTACTCCTTCGGTCTCA 59.647 52.381 0.00 0.00 0.00 3.27
1827 1911 2.025226 TCCACTACTCCTTCGGTCTCAT 60.025 50.000 0.00 0.00 0.00 2.90
1828 1912 2.761208 CCACTACTCCTTCGGTCTCATT 59.239 50.000 0.00 0.00 0.00 2.57
1829 1913 3.952323 CCACTACTCCTTCGGTCTCATTA 59.048 47.826 0.00 0.00 0.00 1.90
1830 1914 4.585162 CCACTACTCCTTCGGTCTCATTAT 59.415 45.833 0.00 0.00 0.00 1.28
1831 1915 5.768662 CCACTACTCCTTCGGTCTCATTATA 59.231 44.000 0.00 0.00 0.00 0.98
1832 1916 6.434652 CCACTACTCCTTCGGTCTCATTATAT 59.565 42.308 0.00 0.00 0.00 0.86
1833 1917 7.610692 CCACTACTCCTTCGGTCTCATTATATA 59.389 40.741 0.00 0.00 0.00 0.86
1834 1918 9.011095 CACTACTCCTTCGGTCTCATTATATAA 57.989 37.037 0.00 0.00 0.00 0.98
1835 1919 9.233649 ACTACTCCTTCGGTCTCATTATATAAG 57.766 37.037 1.02 0.00 0.00 1.73
1836 1920 9.451002 CTACTCCTTCGGTCTCATTATATAAGA 57.549 37.037 1.02 0.00 0.00 2.10
1837 1921 8.343168 ACTCCTTCGGTCTCATTATATAAGAG 57.657 38.462 1.02 8.07 0.00 2.85
1838 1922 7.094118 ACTCCTTCGGTCTCATTATATAAGAGC 60.094 40.741 13.09 8.63 34.90 4.09
1839 1923 6.719829 TCCTTCGGTCTCATTATATAAGAGCA 59.280 38.462 10.98 3.38 37.38 4.26
1840 1924 7.232737 TCCTTCGGTCTCATTATATAAGAGCAA 59.767 37.037 10.98 5.53 37.38 3.91
1841 1925 7.329717 CCTTCGGTCTCATTATATAAGAGCAAC 59.670 40.741 10.98 8.12 37.38 4.17
1842 1926 7.526142 TCGGTCTCATTATATAAGAGCAACT 57.474 36.000 10.98 0.00 37.38 3.16
1843 1927 7.952671 TCGGTCTCATTATATAAGAGCAACTT 58.047 34.615 10.98 2.10 42.04 2.66
1844 1928 8.082852 TCGGTCTCATTATATAAGAGCAACTTC 58.917 37.037 10.98 0.00 39.72 3.01
1845 1929 7.867909 CGGTCTCATTATATAAGAGCAACTTCA 59.132 37.037 10.98 0.00 39.72 3.02
1846 1930 9.547753 GGTCTCATTATATAAGAGCAACTTCAA 57.452 33.333 13.09 0.00 39.72 2.69
1848 1932 9.249457 TCTCATTATATAAGAGCAACTTCAACG 57.751 33.333 13.09 0.00 39.72 4.10
1849 1933 7.851508 TCATTATATAAGAGCAACTTCAACGC 58.148 34.615 1.02 0.00 39.72 4.84
1850 1934 4.778842 ATATAAGAGCAACTTCAACGCG 57.221 40.909 3.53 3.53 39.72 6.01
1851 1935 0.511221 TAAGAGCAACTTCAACGCGC 59.489 50.000 5.73 0.00 39.72 6.86
1852 1936 2.117941 AAGAGCAACTTCAACGCGCC 62.118 55.000 5.73 0.00 32.91 6.53
1853 1937 3.911155 GAGCAACTTCAACGCGCCG 62.911 63.158 5.73 0.00 0.00 6.46
1854 1938 4.007940 GCAACTTCAACGCGCCGA 62.008 61.111 5.73 0.00 0.00 5.54
1855 1939 2.127758 CAACTTCAACGCGCCGAC 60.128 61.111 5.73 0.00 0.00 4.79
1856 1940 3.343421 AACTTCAACGCGCCGACC 61.343 61.111 5.73 0.00 0.00 4.79
1857 1941 3.802418 AACTTCAACGCGCCGACCT 62.802 57.895 5.73 0.00 0.00 3.85
1858 1942 2.126228 CTTCAACGCGCCGACCTA 60.126 61.111 5.73 0.00 0.00 3.08
1859 1943 1.735198 CTTCAACGCGCCGACCTAA 60.735 57.895 5.73 0.00 0.00 2.69
1860 1944 1.286354 CTTCAACGCGCCGACCTAAA 61.286 55.000 5.73 0.00 0.00 1.85
1861 1945 1.559149 TTCAACGCGCCGACCTAAAC 61.559 55.000 5.73 0.00 0.00 2.01
1862 1946 2.025418 CAACGCGCCGACCTAAACT 61.025 57.895 5.73 0.00 0.00 2.66
1863 1947 1.301165 AACGCGCCGACCTAAACTT 60.301 52.632 5.73 0.00 0.00 2.66
1864 1948 1.562575 AACGCGCCGACCTAAACTTG 61.563 55.000 5.73 0.00 0.00 3.16
1865 1949 2.025418 CGCGCCGACCTAAACTTGT 61.025 57.895 0.00 0.00 0.00 3.16
1866 1950 1.785951 GCGCCGACCTAAACTTGTC 59.214 57.895 0.00 0.00 0.00 3.18
1867 1951 0.669625 GCGCCGACCTAAACTTGTCT 60.670 55.000 0.00 0.00 0.00 3.41
1868 1952 1.068474 CGCCGACCTAAACTTGTCTG 58.932 55.000 0.00 0.00 0.00 3.51
1869 1953 1.604693 CGCCGACCTAAACTTGTCTGT 60.605 52.381 0.00 0.00 0.00 3.41
1870 1954 2.490991 GCCGACCTAAACTTGTCTGTT 58.509 47.619 0.00 0.00 0.00 3.16
1871 1955 2.876550 GCCGACCTAAACTTGTCTGTTT 59.123 45.455 0.00 0.00 42.10 2.83
1872 1956 4.060205 GCCGACCTAAACTTGTCTGTTTA 58.940 43.478 0.00 0.00 40.23 2.01
1881 1965 4.866508 ACTTGTCTGTTTAGGTCGATCA 57.133 40.909 0.00 0.00 0.00 2.92
1882 1966 4.557205 ACTTGTCTGTTTAGGTCGATCAC 58.443 43.478 0.00 0.00 0.00 3.06
1883 1967 7.454570 AAACTTGTCTGTTTAGGTCGATCACC 61.455 42.308 0.00 6.29 38.25 4.02
1898 1982 3.153825 ACCCGTTCGGTGTCCATT 58.846 55.556 10.36 0.00 46.09 3.16
1902 1986 1.076332 CCGTTCGGTGTCCATTCTTC 58.924 55.000 2.82 0.00 0.00 2.87
1909 1993 5.934935 TCGGTGTCCATTCTTCTTTTTAC 57.065 39.130 0.00 0.00 0.00 2.01
1926 2010 1.836999 TACTTGGGTCGGCAGTGCAT 61.837 55.000 18.61 0.00 0.00 3.96
1932 2016 1.672356 GTCGGCAGTGCATCCAACT 60.672 57.895 18.61 0.00 0.00 3.16
1933 2017 1.672030 TCGGCAGTGCATCCAACTG 60.672 57.895 18.61 0.00 34.83 3.16
1937 2021 1.915614 GCAGTGCATCCAACTGGTCG 61.916 60.000 11.09 0.00 36.34 4.79
1940 2024 0.392998 GTGCATCCAACTGGTCGGAT 60.393 55.000 0.00 0.00 42.96 4.18
1958 2042 2.289195 GGATCCATATTTACCGGCGTGA 60.289 50.000 6.95 0.00 0.00 4.35
2061 2180 8.743099 GCATAGTTTACAAGCCGAATAAAAATC 58.257 33.333 0.00 0.00 0.00 2.17
2124 2244 4.957954 ACATCTATTGGTTGCCAACATGAT 59.042 37.500 10.18 11.71 46.95 2.45
2146 2266 7.353525 TGATCCCACATATACTCAACCAAATT 58.646 34.615 0.00 0.00 0.00 1.82
2254 2375 3.521531 TCAGGCACAACATTATCACCCTA 59.478 43.478 0.00 0.00 0.00 3.53
2260 2381 6.376018 GGCACAACATTATCACCCTAAAACTA 59.624 38.462 0.00 0.00 0.00 2.24
2289 2410 5.928839 CCTTGATTGTAGATATGTTCCGGAG 59.071 44.000 3.34 0.00 0.00 4.63
2342 2463 1.145738 ACAAAAGCAGTCATCACCCCT 59.854 47.619 0.00 0.00 0.00 4.79
2350 2471 0.107945 GTCATCACCCCTCACAGCTC 60.108 60.000 0.00 0.00 0.00 4.09
2388 2509 2.751166 AGCAGGATACCATACGATGC 57.249 50.000 0.00 0.00 37.17 3.91
2435 2557 0.108615 CATGCTCGACGTCCTTCCTT 60.109 55.000 10.58 0.00 0.00 3.36
2486 2608 2.903135 CCTCTTCTCTCTGACAGGGTTT 59.097 50.000 1.35 0.00 0.00 3.27
2561 2683 7.031372 GGTAGTATCATTTGTCGTAGTTGTGA 58.969 38.462 0.00 0.00 0.00 3.58
2571 2693 2.293955 TCGTAGTTGTGACCGTTGATGA 59.706 45.455 0.00 0.00 0.00 2.92
2591 2713 0.906066 TAACATTCACCAGCGGGCTA 59.094 50.000 1.46 0.00 37.90 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.391661 CTCTGTGGTGTTGGATCCGG 60.392 60.000 7.39 0.00 0.00 5.14
5 6 0.984230 TCCTCTGTGGTGTTGGATCC 59.016 55.000 4.20 4.20 37.07 3.36
6 7 2.616510 CCTTCCTCTGTGGTGTTGGATC 60.617 54.545 0.00 0.00 37.07 3.36
7 8 1.352352 CCTTCCTCTGTGGTGTTGGAT 59.648 52.381 0.00 0.00 37.07 3.41
9 10 0.250901 CCCTTCCTCTGTGGTGTTGG 60.251 60.000 0.00 0.00 37.07 3.77
10 11 0.250901 CCCCTTCCTCTGTGGTGTTG 60.251 60.000 0.00 0.00 37.07 3.33
11 12 1.427072 CCCCCTTCCTCTGTGGTGTT 61.427 60.000 0.00 0.00 37.07 3.32
12 13 1.847968 CCCCCTTCCTCTGTGGTGT 60.848 63.158 0.00 0.00 37.07 4.16
13 14 1.538876 TCCCCCTTCCTCTGTGGTG 60.539 63.158 0.00 0.00 37.07 4.17
14 15 1.229658 CTCCCCCTTCCTCTGTGGT 60.230 63.158 0.00 0.00 37.07 4.16
15 16 1.997874 CCTCCCCCTTCCTCTGTGG 60.998 68.421 0.00 0.00 37.10 4.17
16 17 1.081092 TCCTCCCCCTTCCTCTGTG 59.919 63.158 0.00 0.00 0.00 3.66
17 18 1.081277 GTCCTCCCCCTTCCTCTGT 59.919 63.158 0.00 0.00 0.00 3.41
18 19 1.690985 GGTCCTCCCCCTTCCTCTG 60.691 68.421 0.00 0.00 0.00 3.35
19 20 2.788589 GGTCCTCCCCCTTCCTCT 59.211 66.667 0.00 0.00 0.00 3.69
20 21 2.764547 CGGTCCTCCCCCTTCCTC 60.765 72.222 0.00 0.00 0.00 3.71
21 22 3.281787 TCGGTCCTCCCCCTTCCT 61.282 66.667 0.00 0.00 0.00 3.36
22 23 2.764547 CTCGGTCCTCCCCCTTCC 60.765 72.222 0.00 0.00 0.00 3.46
23 24 2.764547 CCTCGGTCCTCCCCCTTC 60.765 72.222 0.00 0.00 0.00 3.46
24 25 3.281787 TCCTCGGTCCTCCCCCTT 61.282 66.667 0.00 0.00 0.00 3.95
25 26 3.756783 CTCCTCGGTCCTCCCCCT 61.757 72.222 0.00 0.00 0.00 4.79
26 27 3.752167 TCTCCTCGGTCCTCCCCC 61.752 72.222 0.00 0.00 0.00 5.40
27 28 2.442458 GTCTCCTCGGTCCTCCCC 60.442 72.222 0.00 0.00 0.00 4.81
28 29 2.442458 GGTCTCCTCGGTCCTCCC 60.442 72.222 0.00 0.00 0.00 4.30
29 30 2.053277 GTGGTCTCCTCGGTCCTCC 61.053 68.421 0.00 0.00 0.00 4.30
30 31 2.408241 CGTGGTCTCCTCGGTCCTC 61.408 68.421 2.86 0.00 36.95 3.71
31 32 2.212794 ATCGTGGTCTCCTCGGTCCT 62.213 60.000 9.70 0.00 40.35 3.85
32 33 1.726533 GATCGTGGTCTCCTCGGTCC 61.727 65.000 11.00 0.00 42.52 4.46
33 34 1.728672 GATCGTGGTCTCCTCGGTC 59.271 63.158 7.55 7.55 42.01 4.79
34 35 2.113433 CGATCGTGGTCTCCTCGGT 61.113 63.158 7.03 3.41 40.35 4.69
35 36 2.716244 CGATCGTGGTCTCCTCGG 59.284 66.667 7.03 0.00 40.35 4.63
36 37 2.716244 CCGATCGTGGTCTCCTCG 59.284 66.667 15.09 4.23 41.16 4.63
37 38 2.491022 CCCCGATCGTGGTCTCCTC 61.491 68.421 15.09 0.00 0.00 3.71
38 39 2.442272 CCCCGATCGTGGTCTCCT 60.442 66.667 15.09 0.00 0.00 3.69
39 40 3.537874 CCCCCGATCGTGGTCTCC 61.538 72.222 15.71 0.00 0.00 3.71
40 41 2.017559 CTTCCCCCGATCGTGGTCTC 62.018 65.000 15.71 0.00 0.00 3.36
41 42 2.038329 TTCCCCCGATCGTGGTCT 59.962 61.111 15.71 0.00 0.00 3.85
42 43 2.499685 CTTCCCCCGATCGTGGTC 59.500 66.667 15.71 0.00 0.00 4.02
43 44 3.081409 CCTTCCCCCGATCGTGGT 61.081 66.667 15.71 0.00 0.00 4.16
44 45 2.762459 TCCTTCCCCCGATCGTGG 60.762 66.667 15.09 12.54 0.00 4.94
45 46 2.815308 CTCCTTCCCCCGATCGTG 59.185 66.667 15.09 1.60 0.00 4.35
46 47 3.155167 GCTCCTTCCCCCGATCGT 61.155 66.667 15.09 0.00 0.00 3.73
47 48 3.930012 GGCTCCTTCCCCCGATCG 61.930 72.222 8.51 8.51 0.00 3.69
48 49 3.930012 CGGCTCCTTCCCCCGATC 61.930 72.222 0.00 0.00 44.55 3.69
69 70 4.580551 GACGTATGGCGGGTCGGG 62.581 72.222 0.00 0.00 46.52 5.14
78 79 2.954868 GTCAGCGCCGACGTATGG 60.955 66.667 8.21 1.95 42.83 2.74
79 80 2.954868 GGTCAGCGCCGACGTATG 60.955 66.667 17.08 0.66 42.83 2.39
80 81 2.997075 TTGGTCAGCGCCGACGTAT 61.997 57.895 17.08 0.00 42.83 3.06
81 82 3.672447 TTGGTCAGCGCCGACGTA 61.672 61.111 17.08 6.48 42.83 3.57
90 91 4.166011 GGATGCGCGTTGGTCAGC 62.166 66.667 8.43 0.00 0.00 4.26
91 92 2.741985 TGGATGCGCGTTGGTCAG 60.742 61.111 8.43 0.00 0.00 3.51
92 93 3.047280 GTGGATGCGCGTTGGTCA 61.047 61.111 8.43 0.00 0.00 4.02
93 94 3.799755 GGTGGATGCGCGTTGGTC 61.800 66.667 8.43 0.54 0.00 4.02
101 102 4.444838 TTCGTCGGGGTGGATGCG 62.445 66.667 0.00 0.00 0.00 4.73
102 103 2.818274 GTTCGTCGGGGTGGATGC 60.818 66.667 0.00 0.00 0.00 3.91
103 104 2.125269 GGTTCGTCGGGGTGGATG 60.125 66.667 0.00 0.00 0.00 3.51
104 105 2.605295 TGGTTCGTCGGGGTGGAT 60.605 61.111 0.00 0.00 0.00 3.41
105 106 3.307906 CTGGTTCGTCGGGGTGGA 61.308 66.667 0.00 0.00 0.00 4.02
106 107 2.781595 CTTCTGGTTCGTCGGGGTGG 62.782 65.000 0.00 0.00 0.00 4.61
107 108 1.374252 CTTCTGGTTCGTCGGGGTG 60.374 63.158 0.00 0.00 0.00 4.61
108 109 2.580601 CCTTCTGGTTCGTCGGGGT 61.581 63.158 0.00 0.00 0.00 4.95
109 110 2.264794 CCTTCTGGTTCGTCGGGG 59.735 66.667 0.00 0.00 0.00 5.73
110 111 2.434359 GCCTTCTGGTTCGTCGGG 60.434 66.667 0.00 0.00 35.27 5.14
111 112 2.027625 GTGCCTTCTGGTTCGTCGG 61.028 63.158 0.00 0.00 35.27 4.79
112 113 2.027625 GGTGCCTTCTGGTTCGTCG 61.028 63.158 0.00 0.00 35.27 5.12
113 114 2.027625 CGGTGCCTTCTGGTTCGTC 61.028 63.158 0.00 0.00 35.27 4.20
114 115 2.030562 CGGTGCCTTCTGGTTCGT 59.969 61.111 0.00 0.00 35.27 3.85
115 116 2.027625 GTCGGTGCCTTCTGGTTCG 61.028 63.158 0.00 0.00 35.27 3.95
116 117 1.070786 TGTCGGTGCCTTCTGGTTC 59.929 57.895 0.00 0.00 35.27 3.62
117 118 1.227853 GTGTCGGTGCCTTCTGGTT 60.228 57.895 0.00 0.00 35.27 3.67
118 119 2.426023 GTGTCGGTGCCTTCTGGT 59.574 61.111 0.00 0.00 35.27 4.00
119 120 2.358737 GGTGTCGGTGCCTTCTGG 60.359 66.667 0.00 0.00 0.00 3.86
120 121 2.738521 CGGTGTCGGTGCCTTCTG 60.739 66.667 0.00 0.00 0.00 3.02
147 148 2.225791 GAAATTTGCTCCGGGTGGCC 62.226 60.000 0.00 0.00 34.14 5.36
148 149 1.215382 GAAATTTGCTCCGGGTGGC 59.785 57.895 0.00 4.70 34.14 5.01
149 150 1.890174 GGAAATTTGCTCCGGGTGG 59.110 57.895 0.00 0.00 0.00 4.61
155 156 2.340328 ACGCCCGGAAATTTGCTCC 61.340 57.895 0.73 0.00 0.00 4.70
156 157 1.154035 CACGCCCGGAAATTTGCTC 60.154 57.895 0.73 0.00 0.00 4.26
157 158 2.635443 CCACGCCCGGAAATTTGCT 61.635 57.895 0.73 0.00 0.00 3.91
158 159 2.126110 CCACGCCCGGAAATTTGC 60.126 61.111 0.73 0.00 0.00 3.68
159 160 2.126110 GCCACGCCCGGAAATTTG 60.126 61.111 0.73 0.00 0.00 2.32
160 161 3.378602 GGCCACGCCCGGAAATTT 61.379 61.111 0.73 0.00 44.06 1.82
207 208 1.590259 GATTCGGAGGAGTGCGCTC 60.590 63.158 19.20 19.20 37.45 5.03
208 209 2.290122 CTGATTCGGAGGAGTGCGCT 62.290 60.000 9.73 0.00 37.45 5.92
209 210 1.880340 CTGATTCGGAGGAGTGCGC 60.880 63.158 0.00 0.00 37.45 6.09
210 211 0.248825 CTCTGATTCGGAGGAGTGCG 60.249 60.000 13.81 0.00 39.23 5.34
211 212 0.820871 ACTCTGATTCGGAGGAGTGC 59.179 55.000 23.22 0.00 40.86 4.40
212 213 1.407258 GGACTCTGATTCGGAGGAGTG 59.593 57.143 23.22 2.81 40.86 3.51
213 214 1.770294 GGACTCTGATTCGGAGGAGT 58.230 55.000 23.22 12.46 40.86 3.85
214 215 0.665835 CGGACTCTGATTCGGAGGAG 59.334 60.000 23.22 11.94 40.86 3.69
215 216 0.255033 TCGGACTCTGATTCGGAGGA 59.745 55.000 23.22 10.65 40.86 3.71
216 217 0.382515 GTCGGACTCTGATTCGGAGG 59.617 60.000 23.22 8.71 40.86 4.30
217 218 1.332375 GAGTCGGACTCTGATTCGGAG 59.668 57.143 26.79 18.98 41.88 4.63
218 219 1.380524 GAGTCGGACTCTGATTCGGA 58.619 55.000 26.79 1.92 41.88 4.55
219 220 0.382515 GGAGTCGGACTCTGATTCGG 59.617 60.000 30.92 0.00 44.46 4.30
220 221 1.332375 GAGGAGTCGGACTCTGATTCG 59.668 57.143 30.92 0.00 44.46 3.34
221 222 1.679153 GGAGGAGTCGGACTCTGATTC 59.321 57.143 30.92 22.73 44.46 2.52
222 223 1.006043 TGGAGGAGTCGGACTCTGATT 59.994 52.381 30.92 17.58 44.46 2.57
223 224 0.626382 TGGAGGAGTCGGACTCTGAT 59.374 55.000 30.92 20.04 44.46 2.90
224 225 0.626382 ATGGAGGAGTCGGACTCTGA 59.374 55.000 30.92 16.34 44.46 3.27
225 226 0.743688 CATGGAGGAGTCGGACTCTG 59.256 60.000 30.92 19.97 44.46 3.35
226 227 0.333312 ACATGGAGGAGTCGGACTCT 59.667 55.000 30.92 19.86 44.46 3.24
227 228 0.741915 GACATGGAGGAGTCGGACTC 59.258 60.000 26.28 26.28 44.32 3.36
228 229 2.889200 GACATGGAGGAGTCGGACT 58.111 57.895 11.09 11.09 0.00 3.85
233 234 1.899437 TTGGGCGACATGGAGGAGTC 61.899 60.000 0.00 0.00 0.00 3.36
234 235 1.918293 TTGGGCGACATGGAGGAGT 60.918 57.895 0.00 0.00 0.00 3.85
235 236 1.450312 GTTGGGCGACATGGAGGAG 60.450 63.158 0.00 0.00 0.00 3.69
236 237 2.668632 GTTGGGCGACATGGAGGA 59.331 61.111 0.00 0.00 0.00 3.71
237 238 2.819595 CGTTGGGCGACATGGAGG 60.820 66.667 0.00 0.00 44.77 4.30
238 239 3.499737 GCGTTGGGCGACATGGAG 61.500 66.667 0.00 0.00 44.77 3.86
245 246 1.375013 GTTTCTAGGCGTTGGGCGA 60.375 57.895 0.00 0.00 44.92 5.54
246 247 2.736682 CGTTTCTAGGCGTTGGGCG 61.737 63.158 0.00 0.00 44.92 6.13
247 248 3.035576 GCGTTTCTAGGCGTTGGGC 62.036 63.158 0.00 0.00 42.51 5.36
248 249 3.174788 GCGTTTCTAGGCGTTGGG 58.825 61.111 0.00 0.00 0.00 4.12
254 255 2.167861 CCAGCTCGCGTTTCTAGGC 61.168 63.158 5.77 0.70 0.00 3.93
255 256 1.519455 CCCAGCTCGCGTTTCTAGG 60.519 63.158 5.77 0.43 0.00 3.02
256 257 1.519455 CCCCAGCTCGCGTTTCTAG 60.519 63.158 5.77 0.00 0.00 2.43
257 258 1.537814 TTCCCCAGCTCGCGTTTCTA 61.538 55.000 5.77 0.00 0.00 2.10
258 259 2.788191 CTTCCCCAGCTCGCGTTTCT 62.788 60.000 5.77 0.00 0.00 2.52
259 260 2.358247 TTCCCCAGCTCGCGTTTC 60.358 61.111 5.77 0.00 0.00 2.78
260 261 2.358737 CTTCCCCAGCTCGCGTTT 60.359 61.111 5.77 0.00 0.00 3.60
261 262 4.394712 CCTTCCCCAGCTCGCGTT 62.395 66.667 5.77 0.00 0.00 4.84
263 264 4.821589 GTCCTTCCCCAGCTCGCG 62.822 72.222 0.00 0.00 0.00 5.87
264 265 4.821589 CGTCCTTCCCCAGCTCGC 62.822 72.222 0.00 0.00 0.00 5.03
265 266 4.821589 GCGTCCTTCCCCAGCTCG 62.822 72.222 0.00 0.00 0.00 5.03
266 267 4.475135 GGCGTCCTTCCCCAGCTC 62.475 72.222 0.00 0.00 0.00 4.09
269 270 4.452733 GTCGGCGTCCTTCCCCAG 62.453 72.222 6.85 0.00 0.00 4.45
274 275 4.415332 TCTGCGTCGGCGTCCTTC 62.415 66.667 12.58 0.00 44.10 3.46
275 276 4.421479 CTCTGCGTCGGCGTCCTT 62.421 66.667 12.58 0.00 44.10 3.36
278 279 4.838486 CTCCTCTGCGTCGGCGTC 62.838 72.222 12.58 3.77 44.10 5.19
281 282 4.742201 TTGCTCCTCTGCGTCGGC 62.742 66.667 0.00 0.00 40.52 5.54
282 283 2.507992 CTTGCTCCTCTGCGTCGG 60.508 66.667 0.00 0.00 35.36 4.79
283 284 2.507992 CCTTGCTCCTCTGCGTCG 60.508 66.667 0.00 0.00 35.36 5.12
284 285 1.153667 CTCCTTGCTCCTCTGCGTC 60.154 63.158 0.00 0.00 35.36 5.19
285 286 1.603236 CTCTCCTTGCTCCTCTGCGT 61.603 60.000 0.00 0.00 35.36 5.24
286 287 1.141449 CTCTCCTTGCTCCTCTGCG 59.859 63.158 0.00 0.00 35.36 5.18
287 288 1.153389 GCTCTCCTTGCTCCTCTGC 60.153 63.158 0.00 0.00 0.00 4.26
288 289 1.521616 GGCTCTCCTTGCTCCTCTG 59.478 63.158 0.00 0.00 0.00 3.35
289 290 2.057408 CGGCTCTCCTTGCTCCTCT 61.057 63.158 0.00 0.00 0.00 3.69
290 291 2.055042 TCGGCTCTCCTTGCTCCTC 61.055 63.158 0.00 0.00 0.00 3.71
291 292 2.038007 TCGGCTCTCCTTGCTCCT 59.962 61.111 0.00 0.00 0.00 3.69
292 293 2.185608 GTCGGCTCTCCTTGCTCC 59.814 66.667 0.00 0.00 0.00 4.70
293 294 2.185608 GGTCGGCTCTCCTTGCTC 59.814 66.667 0.00 0.00 0.00 4.26
294 295 3.394836 GGGTCGGCTCTCCTTGCT 61.395 66.667 0.00 0.00 0.00 3.91
295 296 4.821589 CGGGTCGGCTCTCCTTGC 62.822 72.222 0.00 0.00 0.00 4.01
296 297 4.821589 GCGGGTCGGCTCTCCTTG 62.822 72.222 0.00 0.00 0.00 3.61
334 335 3.148279 CTTCCCTCCCTCCCGTCG 61.148 72.222 0.00 0.00 0.00 5.12
335 336 2.764547 CCTTCCCTCCCTCCCGTC 60.765 72.222 0.00 0.00 0.00 4.79
336 337 4.416601 CCCTTCCCTCCCTCCCGT 62.417 72.222 0.00 0.00 0.00 5.28
379 380 4.760220 TTCCCCTCCTCCCCTGCC 62.760 72.222 0.00 0.00 0.00 4.85
380 381 3.412408 GTTCCCCTCCTCCCCTGC 61.412 72.222 0.00 0.00 0.00 4.85
381 382 3.083997 CGTTCCCCTCCTCCCCTG 61.084 72.222 0.00 0.00 0.00 4.45
382 383 4.416601 CCGTTCCCCTCCTCCCCT 62.417 72.222 0.00 0.00 0.00 4.79
385 386 4.410033 TCCCCGTTCCCCTCCTCC 62.410 72.222 0.00 0.00 0.00 4.30
386 387 2.764547 CTCCCCGTTCCCCTCCTC 60.765 72.222 0.00 0.00 0.00 3.71
389 390 3.787001 CTGCTCCCCGTTCCCCTC 61.787 72.222 0.00 0.00 0.00 4.30
407 408 4.798682 TCCTCTCCCTTCGCCCCC 62.799 72.222 0.00 0.00 0.00 5.40
408 409 3.157949 CTCCTCTCCCTTCGCCCC 61.158 72.222 0.00 0.00 0.00 5.80
409 410 3.157949 CCTCCTCTCCCTTCGCCC 61.158 72.222 0.00 0.00 0.00 6.13
410 411 3.157949 CCCTCCTCTCCCTTCGCC 61.158 72.222 0.00 0.00 0.00 5.54
411 412 2.042843 TCCCTCCTCTCCCTTCGC 60.043 66.667 0.00 0.00 0.00 4.70
412 413 0.467290 CTCTCCCTCCTCTCCCTTCG 60.467 65.000 0.00 0.00 0.00 3.79
413 414 0.105709 CCTCTCCCTCCTCTCCCTTC 60.106 65.000 0.00 0.00 0.00 3.46
414 415 0.556380 TCCTCTCCCTCCTCTCCCTT 60.556 60.000 0.00 0.00 0.00 3.95
415 416 1.087725 TCCTCTCCCTCCTCTCCCT 59.912 63.158 0.00 0.00 0.00 4.20
416 417 1.231928 GTCCTCTCCCTCCTCTCCC 59.768 68.421 0.00 0.00 0.00 4.30
417 418 1.231928 GGTCCTCTCCCTCCTCTCC 59.768 68.421 0.00 0.00 0.00 3.71
418 419 1.231928 GGGTCCTCTCCCTCCTCTC 59.768 68.421 0.00 0.00 43.85 3.20
419 420 3.446050 GGGTCCTCTCCCTCCTCT 58.554 66.667 0.00 0.00 43.85 3.69
426 427 7.060421 TCAACAAATTATAATGGGTCCTCTCC 58.940 38.462 0.00 0.00 0.00 3.71
427 428 7.775561 ACTCAACAAATTATAATGGGTCCTCTC 59.224 37.037 0.00 0.00 0.00 3.20
428 429 7.643123 ACTCAACAAATTATAATGGGTCCTCT 58.357 34.615 0.00 0.00 0.00 3.69
429 430 7.881775 ACTCAACAAATTATAATGGGTCCTC 57.118 36.000 0.00 0.00 0.00 3.71
430 431 8.664669 AAACTCAACAAATTATAATGGGTCCT 57.335 30.769 0.00 0.00 0.00 3.85
431 432 8.749354 AGAAACTCAACAAATTATAATGGGTCC 58.251 33.333 0.00 0.00 0.00 4.46
439 440 9.474920 CAGCCAAAAGAAACTCAACAAATTATA 57.525 29.630 0.00 0.00 0.00 0.98
440 441 7.986889 ACAGCCAAAAGAAACTCAACAAATTAT 59.013 29.630 0.00 0.00 0.00 1.28
441 442 7.277539 CACAGCCAAAAGAAACTCAACAAATTA 59.722 33.333 0.00 0.00 0.00 1.40
442 443 6.092533 CACAGCCAAAAGAAACTCAACAAATT 59.907 34.615 0.00 0.00 0.00 1.82
443 444 5.581874 CACAGCCAAAAGAAACTCAACAAAT 59.418 36.000 0.00 0.00 0.00 2.32
444 445 4.928615 CACAGCCAAAAGAAACTCAACAAA 59.071 37.500 0.00 0.00 0.00 2.83
445 446 4.021544 ACACAGCCAAAAGAAACTCAACAA 60.022 37.500 0.00 0.00 0.00 2.83
446 447 3.509575 ACACAGCCAAAAGAAACTCAACA 59.490 39.130 0.00 0.00 0.00 3.33
447 448 4.110036 ACACAGCCAAAAGAAACTCAAC 57.890 40.909 0.00 0.00 0.00 3.18
448 449 4.947388 ACTACACAGCCAAAAGAAACTCAA 59.053 37.500 0.00 0.00 0.00 3.02
449 450 4.335315 CACTACACAGCCAAAAGAAACTCA 59.665 41.667 0.00 0.00 0.00 3.41
450 451 4.789802 GCACTACACAGCCAAAAGAAACTC 60.790 45.833 0.00 0.00 0.00 3.01
451 452 3.066760 GCACTACACAGCCAAAAGAAACT 59.933 43.478 0.00 0.00 0.00 2.66
452 453 3.181491 TGCACTACACAGCCAAAAGAAAC 60.181 43.478 0.00 0.00 0.00 2.78
453 454 3.020274 TGCACTACACAGCCAAAAGAAA 58.980 40.909 0.00 0.00 0.00 2.52
454 455 2.649190 TGCACTACACAGCCAAAAGAA 58.351 42.857 0.00 0.00 0.00 2.52
455 456 2.340210 TGCACTACACAGCCAAAAGA 57.660 45.000 0.00 0.00 0.00 2.52
466 467 1.128200 ACCAGGTTCAGTGCACTACA 58.872 50.000 21.20 6.28 0.00 2.74
467 468 1.202651 ACACCAGGTTCAGTGCACTAC 60.203 52.381 21.20 15.27 37.51 2.73
468 469 1.128200 ACACCAGGTTCAGTGCACTA 58.872 50.000 21.20 1.09 37.51 2.74
469 470 0.255890 AACACCAGGTTCAGTGCACT 59.744 50.000 15.25 15.25 37.51 4.40
470 471 0.381801 CAACACCAGGTTCAGTGCAC 59.618 55.000 9.40 9.40 37.72 4.57
471 472 0.034574 ACAACACCAGGTTCAGTGCA 60.035 50.000 0.00 0.00 37.72 4.57
472 473 1.602377 GTACAACACCAGGTTCAGTGC 59.398 52.381 0.00 0.00 37.72 4.40
473 474 2.912771 TGTACAACACCAGGTTCAGTG 58.087 47.619 0.00 0.00 37.72 3.66
474 475 3.496160 GGATGTACAACACCAGGTTCAGT 60.496 47.826 0.00 0.00 37.72 3.41
475 476 3.074412 GGATGTACAACACCAGGTTCAG 58.926 50.000 0.00 0.00 37.72 3.02
476 477 2.708861 AGGATGTACAACACCAGGTTCA 59.291 45.455 15.82 0.00 37.72 3.18
477 478 3.008049 AGAGGATGTACAACACCAGGTTC 59.992 47.826 15.82 7.50 37.72 3.62
478 479 2.979678 AGAGGATGTACAACACCAGGTT 59.020 45.455 15.82 0.16 41.47 3.50
479 480 2.303022 CAGAGGATGTACAACACCAGGT 59.697 50.000 15.82 0.00 0.00 4.00
480 481 2.303022 ACAGAGGATGTACAACACCAGG 59.697 50.000 15.82 9.13 41.60 4.45
481 482 3.329386 CACAGAGGATGTACAACACCAG 58.671 50.000 15.82 9.62 41.41 4.00
482 483 2.038426 CCACAGAGGATGTACAACACCA 59.962 50.000 15.82 0.00 41.41 4.17
483 484 2.301870 TCCACAGAGGATGTACAACACC 59.698 50.000 0.00 4.30 43.07 4.16
484 485 3.678056 TCCACAGAGGATGTACAACAC 57.322 47.619 0.00 0.00 43.07 3.32
495 496 0.820226 TGAGCGATCTTCCACAGAGG 59.180 55.000 0.90 0.00 33.87 3.69
496 497 2.662006 TTGAGCGATCTTCCACAGAG 57.338 50.000 0.90 0.00 33.87 3.35
497 498 3.401033 TTTTGAGCGATCTTCCACAGA 57.599 42.857 0.90 0.00 35.33 3.41
516 517 5.901552 TCGATTGCTCTTTTTCACCTTTTT 58.098 33.333 0.00 0.00 0.00 1.94
517 518 5.514274 TCGATTGCTCTTTTTCACCTTTT 57.486 34.783 0.00 0.00 0.00 2.27
518 519 5.617751 CGATCGATTGCTCTTTTTCACCTTT 60.618 40.000 10.26 0.00 0.00 3.11
519 520 4.142816 CGATCGATTGCTCTTTTTCACCTT 60.143 41.667 10.26 0.00 0.00 3.50
520 521 3.372206 CGATCGATTGCTCTTTTTCACCT 59.628 43.478 10.26 0.00 0.00 4.00
521 522 3.370978 TCGATCGATTGCTCTTTTTCACC 59.629 43.478 15.15 0.00 0.00 4.02
522 523 4.327357 TCTCGATCGATTGCTCTTTTTCAC 59.673 41.667 19.78 0.00 0.00 3.18
523 524 4.327357 GTCTCGATCGATTGCTCTTTTTCA 59.673 41.667 19.78 0.00 0.00 2.69
524 525 4.547210 CGTCTCGATCGATTGCTCTTTTTC 60.547 45.833 19.78 0.00 0.00 2.29
525 526 3.304559 CGTCTCGATCGATTGCTCTTTTT 59.695 43.478 19.78 0.00 0.00 1.94
526 527 2.854777 CGTCTCGATCGATTGCTCTTTT 59.145 45.455 19.78 0.00 0.00 2.27
527 528 2.455032 CGTCTCGATCGATTGCTCTTT 58.545 47.619 19.78 0.00 0.00 2.52
528 529 1.268794 CCGTCTCGATCGATTGCTCTT 60.269 52.381 19.78 0.00 0.00 2.85
529 530 0.309302 CCGTCTCGATCGATTGCTCT 59.691 55.000 19.78 0.00 0.00 4.09
530 531 0.029567 ACCGTCTCGATCGATTGCTC 59.970 55.000 19.78 6.67 0.00 4.26
531 532 0.456221 AACCGTCTCGATCGATTGCT 59.544 50.000 19.78 0.00 0.00 3.91
532 533 1.278238 AAACCGTCTCGATCGATTGC 58.722 50.000 19.78 10.58 0.00 3.56
533 534 4.348656 TCTTAAACCGTCTCGATCGATTG 58.651 43.478 19.78 8.23 0.00 2.67
534 535 4.627611 TCTTAAACCGTCTCGATCGATT 57.372 40.909 19.78 11.29 0.00 3.34
535 536 4.627611 TTCTTAAACCGTCTCGATCGAT 57.372 40.909 19.78 0.00 0.00 3.59
536 537 4.424061 TTTCTTAAACCGTCTCGATCGA 57.576 40.909 18.32 18.32 0.00 3.59
537 538 5.697848 ATTTTCTTAAACCGTCTCGATCG 57.302 39.130 9.36 9.36 0.00 3.69
538 539 7.057149 TCAATTTTCTTAAACCGTCTCGATC 57.943 36.000 0.00 0.00 0.00 3.69
539 540 6.092259 CCTCAATTTTCTTAAACCGTCTCGAT 59.908 38.462 0.00 0.00 0.00 3.59
540 541 5.407387 CCTCAATTTTCTTAAACCGTCTCGA 59.593 40.000 0.00 0.00 0.00 4.04
541 542 5.390567 CCCTCAATTTTCTTAAACCGTCTCG 60.391 44.000 0.00 0.00 0.00 4.04
542 543 5.704053 TCCCTCAATTTTCTTAAACCGTCTC 59.296 40.000 0.00 0.00 0.00 3.36
543 544 5.627135 TCCCTCAATTTTCTTAAACCGTCT 58.373 37.500 0.00 0.00 0.00 4.18
544 545 5.952526 TCCCTCAATTTTCTTAAACCGTC 57.047 39.130 0.00 0.00 0.00 4.79
545 546 6.066032 TCTTCCCTCAATTTTCTTAAACCGT 58.934 36.000 0.00 0.00 0.00 4.83
546 547 6.569179 TCTTCCCTCAATTTTCTTAAACCG 57.431 37.500 0.00 0.00 0.00 4.44
547 548 8.585018 TCATTCTTCCCTCAATTTTCTTAAACC 58.415 33.333 0.00 0.00 0.00 3.27
548 549 9.981114 TTCATTCTTCCCTCAATTTTCTTAAAC 57.019 29.630 0.00 0.00 0.00 2.01
551 552 9.586732 TCTTTCATTCTTCCCTCAATTTTCTTA 57.413 29.630 0.00 0.00 0.00 2.10
552 553 8.482852 TCTTTCATTCTTCCCTCAATTTTCTT 57.517 30.769 0.00 0.00 0.00 2.52
553 554 8.529476 CATCTTTCATTCTTCCCTCAATTTTCT 58.471 33.333 0.00 0.00 0.00 2.52
554 555 7.277319 GCATCTTTCATTCTTCCCTCAATTTTC 59.723 37.037 0.00 0.00 0.00 2.29
555 556 7.101700 GCATCTTTCATTCTTCCCTCAATTTT 58.898 34.615 0.00 0.00 0.00 1.82
556 557 6.626623 CGCATCTTTCATTCTTCCCTCAATTT 60.627 38.462 0.00 0.00 0.00 1.82
557 558 5.163581 CGCATCTTTCATTCTTCCCTCAATT 60.164 40.000 0.00 0.00 0.00 2.32
564 565 2.019984 AGGCGCATCTTTCATTCTTCC 58.980 47.619 10.83 0.00 0.00 3.46
716 720 6.276091 GGAATGGAATTATTGGCTTTGACTC 58.724 40.000 0.00 0.00 36.07 3.36
776 780 3.003793 GGAGAAGTTTGACAAGAGTTGGC 59.996 47.826 0.00 0.00 39.85 4.52
777 781 4.035675 GTGGAGAAGTTTGACAAGAGTTGG 59.964 45.833 0.00 0.00 34.12 3.77
859 881 1.223487 GGCTATGGGCAGGTTTCGA 59.777 57.895 0.00 0.00 44.01 3.71
860 882 1.823899 GGGCTATGGGCAGGTTTCG 60.824 63.158 4.70 0.00 44.01 3.46
861 883 1.823899 CGGGCTATGGGCAGGTTTC 60.824 63.158 4.70 0.00 44.01 2.78
862 884 2.275418 CGGGCTATGGGCAGGTTT 59.725 61.111 4.70 0.00 44.01 3.27
863 885 3.015145 ACGGGCTATGGGCAGGTT 61.015 61.111 7.72 0.00 44.01 3.50
864 886 3.480133 GACGGGCTATGGGCAGGT 61.480 66.667 7.72 3.08 44.01 4.00
865 887 3.164269 AGACGGGCTATGGGCAGG 61.164 66.667 7.72 0.00 44.01 4.85
866 888 2.423446 GAGACGGGCTATGGGCAG 59.577 66.667 4.70 2.64 44.01 4.85
867 889 3.536917 CGAGACGGGCTATGGGCA 61.537 66.667 4.70 0.00 44.01 5.36
868 890 4.971125 GCGAGACGGGCTATGGGC 62.971 72.222 0.00 0.00 40.90 5.36
869 891 3.214250 GAGCGAGACGGGCTATGGG 62.214 68.421 0.00 0.00 41.72 4.00
870 892 2.136196 GAGAGCGAGACGGGCTATGG 62.136 65.000 0.00 0.00 41.72 2.74
871 893 1.284408 GAGAGCGAGACGGGCTATG 59.716 63.158 0.00 0.00 41.72 2.23
872 894 1.899534 GGAGAGCGAGACGGGCTAT 60.900 63.158 0.00 0.00 41.72 2.97
873 895 2.516460 GGAGAGCGAGACGGGCTA 60.516 66.667 0.00 0.00 41.72 3.93
888 910 3.207778 CCGGGATTATAAACTTTGCGGA 58.792 45.455 0.00 0.00 0.00 5.54
889 911 2.287368 GCCGGGATTATAAACTTTGCGG 60.287 50.000 2.18 0.00 0.00 5.69
913 935 4.157840 TCTCTCTATCTCTCTCTCGATCCG 59.842 50.000 0.00 0.00 0.00 4.18
914 936 5.394663 CCTCTCTCTATCTCTCTCTCGATCC 60.395 52.000 0.00 0.00 0.00 3.36
923 945 2.884639 GTGCACCCTCTCTCTATCTCTC 59.115 54.545 5.22 0.00 0.00 3.20
929 951 0.965866 CACGGTGCACCCTCTCTCTA 60.966 60.000 29.95 0.00 0.00 2.43
944 971 2.159393 CCACAGATTAAACCATGCACGG 60.159 50.000 0.00 0.00 0.00 4.94
987 1020 1.724581 GCCCATATTTAACGCGCGC 60.725 57.895 32.58 23.91 0.00 6.86
988 1021 0.237235 ATGCCCATATTTAACGCGCG 59.763 50.000 30.96 30.96 0.00 6.86
1026 1059 2.197324 CTCCCCTCCTCCTCCTCG 59.803 72.222 0.00 0.00 0.00 4.63
1316 1367 3.056938 GCTTCTGCTGCTGCTGCT 61.057 61.111 27.67 0.00 40.48 4.24
1317 1368 4.117661 GGCTTCTGCTGCTGCTGC 62.118 66.667 22.51 22.51 40.48 5.25
1318 1369 3.800863 CGGCTTCTGCTGCTGCTG 61.801 66.667 17.00 15.94 38.88 4.41
1345 1396 2.507102 CACGTACTGGAGCAGCCG 60.507 66.667 0.00 0.00 40.66 5.52
1452 1503 1.038130 CGTCGATCCCCTCCTTGTCT 61.038 60.000 0.00 0.00 0.00 3.41
1455 1506 2.815308 CCGTCGATCCCCTCCTTG 59.185 66.667 0.00 0.00 0.00 3.61
1477 1534 2.346365 GCCGTCGACCCTTTCCTT 59.654 61.111 10.58 0.00 0.00 3.36
1478 1535 4.065281 CGCCGTCGACCCTTTCCT 62.065 66.667 10.58 0.00 38.10 3.36
1479 1536 4.060038 TCGCCGTCGACCCTTTCC 62.060 66.667 10.58 0.00 40.21 3.13
1507 1564 3.839432 CTTCCTCCCCTCGCCGTC 61.839 72.222 0.00 0.00 0.00 4.79
1510 1567 3.471806 GTCCTTCCTCCCCTCGCC 61.472 72.222 0.00 0.00 0.00 5.54
1511 1568 2.245438 CTTGTCCTTCCTCCCCTCGC 62.245 65.000 0.00 0.00 0.00 5.03
1512 1569 1.901085 CTTGTCCTTCCTCCCCTCG 59.099 63.158 0.00 0.00 0.00 4.63
1736 1817 4.405680 CAGGAAAGGGAAAGGAAACAAACT 59.594 41.667 0.00 0.00 0.00 2.66
1794 1878 8.077386 CGAAGGAGTAGTGGATAAGAGAAATAC 58.923 40.741 0.00 0.00 0.00 1.89
1797 1881 6.452494 CGAAGGAGTAGTGGATAAGAGAAA 57.548 41.667 0.00 0.00 0.00 2.52
1816 1900 8.085296 AGTTGCTCTTATATAATGAGACCGAAG 58.915 37.037 18.43 0.00 0.00 3.79
1817 1901 7.952671 AGTTGCTCTTATATAATGAGACCGAA 58.047 34.615 18.43 8.01 0.00 4.30
1818 1902 7.526142 AGTTGCTCTTATATAATGAGACCGA 57.474 36.000 18.43 3.39 0.00 4.69
1819 1903 7.867909 TGAAGTTGCTCTTATATAATGAGACCG 59.132 37.037 18.43 0.00 36.40 4.79
1820 1904 9.547753 TTGAAGTTGCTCTTATATAATGAGACC 57.452 33.333 18.43 9.66 36.40 3.85
1822 1906 9.249457 CGTTGAAGTTGCTCTTATATAATGAGA 57.751 33.333 18.43 4.88 36.40 3.27
1823 1907 8.006590 GCGTTGAAGTTGCTCTTATATAATGAG 58.993 37.037 13.39 13.39 36.40 2.90
1824 1908 7.306574 CGCGTTGAAGTTGCTCTTATATAATGA 60.307 37.037 0.00 0.00 36.40 2.57
1825 1909 6.787515 CGCGTTGAAGTTGCTCTTATATAATG 59.212 38.462 0.00 0.00 36.40 1.90
1826 1910 6.564125 GCGCGTTGAAGTTGCTCTTATATAAT 60.564 38.462 8.43 0.00 36.40 1.28
1827 1911 5.276678 GCGCGTTGAAGTTGCTCTTATATAA 60.277 40.000 8.43 0.00 36.40 0.98
1828 1912 4.208460 GCGCGTTGAAGTTGCTCTTATATA 59.792 41.667 8.43 0.00 36.40 0.86
1829 1913 3.001330 GCGCGTTGAAGTTGCTCTTATAT 59.999 43.478 8.43 0.00 36.40 0.86
1830 1914 2.347452 GCGCGTTGAAGTTGCTCTTATA 59.653 45.455 8.43 0.00 36.40 0.98
1831 1915 1.128692 GCGCGTTGAAGTTGCTCTTAT 59.871 47.619 8.43 0.00 36.40 1.73
1832 1916 0.511221 GCGCGTTGAAGTTGCTCTTA 59.489 50.000 8.43 0.00 36.40 2.10
1833 1917 1.279840 GCGCGTTGAAGTTGCTCTT 59.720 52.632 8.43 0.00 39.32 2.85
1834 1918 2.607892 GGCGCGTTGAAGTTGCTCT 61.608 57.895 8.43 0.00 0.00 4.09
1835 1919 2.127232 GGCGCGTTGAAGTTGCTC 60.127 61.111 8.43 0.00 0.00 4.26
1836 1920 4.012895 CGGCGCGTTGAAGTTGCT 62.013 61.111 8.43 0.00 0.00 3.91
1837 1921 4.007940 TCGGCGCGTTGAAGTTGC 62.008 61.111 8.43 0.00 0.00 4.17
1838 1922 2.127758 GTCGGCGCGTTGAAGTTG 60.128 61.111 8.43 0.00 0.00 3.16
1839 1923 2.424705 TAGGTCGGCGCGTTGAAGTT 62.425 55.000 8.43 0.00 0.00 2.66
1840 1924 2.424705 TTAGGTCGGCGCGTTGAAGT 62.425 55.000 8.43 0.00 0.00 3.01
1841 1925 1.286354 TTTAGGTCGGCGCGTTGAAG 61.286 55.000 8.43 0.00 0.00 3.02
1842 1926 1.300775 TTTAGGTCGGCGCGTTGAA 60.301 52.632 8.43 0.00 0.00 2.69
1843 1927 2.023223 GTTTAGGTCGGCGCGTTGA 61.023 57.895 8.43 2.59 0.00 3.18
1844 1928 1.562575 AAGTTTAGGTCGGCGCGTTG 61.563 55.000 8.43 0.00 0.00 4.10
1845 1929 1.301165 AAGTTTAGGTCGGCGCGTT 60.301 52.632 8.43 0.00 0.00 4.84
1846 1930 2.025418 CAAGTTTAGGTCGGCGCGT 61.025 57.895 8.43 1.54 0.00 6.01
1847 1931 1.952266 GACAAGTTTAGGTCGGCGCG 61.952 60.000 0.00 0.00 0.00 6.86
1848 1932 0.669625 AGACAAGTTTAGGTCGGCGC 60.670 55.000 0.00 0.00 39.01 6.53
1849 1933 1.068474 CAGACAAGTTTAGGTCGGCG 58.932 55.000 0.00 0.00 39.01 6.46
1850 1934 2.165319 ACAGACAAGTTTAGGTCGGC 57.835 50.000 0.00 0.00 39.01 5.54
1857 1941 6.643770 GTGATCGACCTAAACAGACAAGTTTA 59.356 38.462 0.00 0.00 41.58 2.01
1858 1942 5.465724 GTGATCGACCTAAACAGACAAGTTT 59.534 40.000 0.00 0.00 43.58 2.66
1859 1943 4.989168 GTGATCGACCTAAACAGACAAGTT 59.011 41.667 0.00 0.00 0.00 2.66
1860 1944 4.557205 GTGATCGACCTAAACAGACAAGT 58.443 43.478 0.00 0.00 0.00 3.16
1861 1945 3.927142 GGTGATCGACCTAAACAGACAAG 59.073 47.826 6.98 0.00 42.25 3.16
1862 1946 3.306502 GGGTGATCGACCTAAACAGACAA 60.307 47.826 12.27 0.00 45.33 3.18
1863 1947 2.232941 GGGTGATCGACCTAAACAGACA 59.767 50.000 12.27 0.00 45.33 3.41
1864 1948 2.734492 CGGGTGATCGACCTAAACAGAC 60.734 54.545 12.27 0.00 45.33 3.51
1865 1949 1.475280 CGGGTGATCGACCTAAACAGA 59.525 52.381 12.27 0.00 45.33 3.41
1866 1950 1.203994 ACGGGTGATCGACCTAAACAG 59.796 52.381 12.27 0.00 45.33 3.16
1867 1951 1.259609 ACGGGTGATCGACCTAAACA 58.740 50.000 12.27 0.00 45.33 2.83
1868 1952 2.265683 GAACGGGTGATCGACCTAAAC 58.734 52.381 12.27 0.00 45.33 2.01
1869 1953 1.135315 CGAACGGGTGATCGACCTAAA 60.135 52.381 12.27 0.00 45.33 1.85
1870 1954 0.452987 CGAACGGGTGATCGACCTAA 59.547 55.000 12.27 0.00 45.33 2.69
1871 1955 1.378882 CCGAACGGGTGATCGACCTA 61.379 60.000 5.25 0.00 45.33 3.08
1872 1956 2.707849 CCGAACGGGTGATCGACCT 61.708 63.158 5.25 0.00 45.33 3.85
1873 1957 2.202703 CCGAACGGGTGATCGACC 60.203 66.667 5.25 5.94 42.35 4.79
1882 1966 0.321298 AAGAATGGACACCGAACGGG 60.321 55.000 17.44 8.83 43.62 5.28
1883 1967 1.076332 GAAGAATGGACACCGAACGG 58.924 55.000 11.83 11.83 42.03 4.44
1884 1968 2.080286 AGAAGAATGGACACCGAACG 57.920 50.000 0.00 0.00 0.00 3.95
1885 1969 4.830826 AAAAGAAGAATGGACACCGAAC 57.169 40.909 0.00 0.00 0.00 3.95
1886 1970 6.059484 AGTAAAAAGAAGAATGGACACCGAA 58.941 36.000 0.00 0.00 0.00 4.30
1896 1980 4.217767 GCCGACCCAAGTAAAAAGAAGAAT 59.782 41.667 0.00 0.00 0.00 2.40
1897 1981 3.566742 GCCGACCCAAGTAAAAAGAAGAA 59.433 43.478 0.00 0.00 0.00 2.52
1898 1982 3.143728 GCCGACCCAAGTAAAAAGAAGA 58.856 45.455 0.00 0.00 0.00 2.87
1902 1986 2.031157 CACTGCCGACCCAAGTAAAAAG 60.031 50.000 0.00 0.00 0.00 2.27
1909 1993 2.360350 ATGCACTGCCGACCCAAG 60.360 61.111 0.00 0.00 0.00 3.61
1926 2010 2.168458 TATGGATCCGACCAGTTGGA 57.832 50.000 9.23 9.23 46.58 3.53
1932 2016 2.300723 CCGGTAAATATGGATCCGACCA 59.699 50.000 7.39 0.00 43.22 4.02
1933 2017 2.933928 GCCGGTAAATATGGATCCGACC 60.934 54.545 7.39 6.49 43.22 4.79
1937 2021 2.073816 CACGCCGGTAAATATGGATCC 58.926 52.381 4.20 4.20 0.00 3.36
1940 2024 1.202557 GGTCACGCCGGTAAATATGGA 60.203 52.381 1.90 0.00 0.00 3.41
1958 2042 0.107165 GAAAATAGAGGCCAGCCGGT 60.107 55.000 5.01 0.00 41.95 5.28
2027 2121 8.495361 TCGGCTTGTAAACTATGCTTTATTTA 57.505 30.769 0.00 0.00 0.00 1.40
2031 2127 6.995511 ATTCGGCTTGTAAACTATGCTTTA 57.004 33.333 0.00 0.00 0.00 1.85
2033 2151 6.995511 TTATTCGGCTTGTAAACTATGCTT 57.004 33.333 0.00 0.00 0.00 3.91
2098 2218 6.606796 TCATGTTGGCAACCAATAGATGTATT 59.393 34.615 26.31 0.00 45.80 1.89
2124 2244 9.707957 AAATAATTTGGTTGAGTATATGTGGGA 57.292 29.630 0.00 0.00 0.00 4.37
2162 2282 4.454728 AATGCGTGATTGGCAAACTAAT 57.545 36.364 3.01 0.00 44.66 1.73
2164 2284 3.254411 TGAAATGCGTGATTGGCAAACTA 59.746 39.130 3.01 0.00 44.66 2.24
2170 2291 2.565210 TCATGAAATGCGTGATTGGC 57.435 45.000 0.00 0.00 46.21 4.52
2198 2319 2.159435 GGCAACGTTTGAACAGTTCACT 60.159 45.455 15.93 0.00 39.87 3.41
2246 2367 6.616577 TCAAGGGTTTTAGTTTTAGGGTGAT 58.383 36.000 0.00 0.00 0.00 3.06
2260 2381 7.067008 CGGAACATATCTACAATCAAGGGTTTT 59.933 37.037 0.00 0.00 0.00 2.43
2289 2410 6.309980 CACAATATGATCGTAGAAGATGAGCC 59.690 42.308 0.41 0.00 43.58 4.70
2325 2446 1.067295 TGAGGGGTGATGACTGCTTT 58.933 50.000 0.00 0.00 0.00 3.51
2342 2463 1.290324 GAGCACGAAGGAGCTGTGA 59.710 57.895 5.38 0.00 42.68 3.58
2350 2471 0.895530 TAGGACTTGGAGCACGAAGG 59.104 55.000 10.36 0.00 36.42 3.46
2388 2509 1.818060 TGTTTTGCAATCTCGATGGGG 59.182 47.619 0.00 0.00 0.00 4.96
2561 2683 4.584874 TGGTGAATGTTATCATCAACGGT 58.415 39.130 0.00 0.00 37.50 4.83
2571 2693 0.255890 AGCCCGCTGGTGAATGTTAT 59.744 50.000 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.