Multiple sequence alignment - TraesCS4D01G054300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G054300 chr4D 100.000 3775 0 0 1 3775 30199756 30195982 0.000000e+00 6972.0
1 TraesCS4D01G054300 chr4B 93.600 1625 92 7 1839 3453 43064037 43062415 0.000000e+00 2414.0
2 TraesCS4D01G054300 chr4B 92.017 927 49 14 423 1330 43065940 43065020 0.000000e+00 1279.0
3 TraesCS4D01G054300 chr4B 94.430 377 19 2 1466 1840 43064673 43064297 2.530000e-161 579.0
4 TraesCS4D01G054300 chr4B 89.286 196 20 1 60 254 43066463 43066268 1.050000e-60 244.0
5 TraesCS4D01G054300 chr4B 95.205 146 6 1 252 397 43066080 43065936 2.930000e-56 230.0
6 TraesCS4D01G054300 chr4B 93.277 119 6 2 1284 1402 43065008 43064892 1.390000e-39 174.0
7 TraesCS4D01G054300 chr4B 93.651 63 3 1 1 62 471112965 471113027 4.010000e-15 93.5
8 TraesCS4D01G054300 chr4B 95.833 48 2 0 3560 3607 43062266 43062219 1.120000e-10 78.7
9 TraesCS4D01G054300 chr4B 89.091 55 5 1 1666 1719 43064541 43064487 2.430000e-07 67.6
10 TraesCS4D01G054300 chr4A 89.211 1520 118 20 655 2159 572841252 572842740 0.000000e+00 1857.0
11 TraesCS4D01G054300 chr4A 90.281 854 57 9 2333 3162 572843388 572844239 0.000000e+00 1094.0
12 TraesCS4D01G054300 chr4A 82.707 266 33 7 303 560 572840921 572841181 1.360000e-54 224.0
13 TraesCS4D01G054300 chr4A 85.455 165 20 3 2151 2315 572843240 572843400 6.480000e-38 169.0
14 TraesCS4D01G054300 chr3B 83.732 209 32 2 3555 3761 704097996 704098204 2.970000e-46 196.0
15 TraesCS4D01G054300 chr6B 98.333 60 0 1 1 59 29539417 29539476 1.850000e-18 104.0
16 TraesCS4D01G054300 chr1A 95.161 62 1 2 1 62 466353047 466352988 3.100000e-16 97.1
17 TraesCS4D01G054300 chr2A 90.411 73 5 2 1 71 127040198 127040270 1.120000e-15 95.3
18 TraesCS4D01G054300 chr3A 93.651 63 3 1 1 62 743837935 743837873 4.010000e-15 93.5
19 TraesCS4D01G054300 chr1D 95.000 60 2 1 1 59 335407070 335407129 4.010000e-15 93.5
20 TraesCS4D01G054300 chr7A 93.443 61 3 1 1 60 307084634 307084574 5.190000e-14 89.8
21 TraesCS4D01G054300 chr6D 92.308 65 2 3 1 65 47035072 47035011 5.190000e-14 89.8
22 TraesCS4D01G054300 chr1B 89.706 68 6 1 1 67 570720865 570720798 6.720000e-13 86.1
23 TraesCS4D01G054300 chr5D 94.737 38 2 0 261 298 119760295 119760332 4.070000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G054300 chr4D 30195982 30199756 3774 True 6972.0000 6972 100.000000 1 3775 1 chr4D.!!$R1 3774
1 TraesCS4D01G054300 chr4B 43062219 43066463 4244 True 633.2875 2414 92.842375 60 3607 8 chr4B.!!$R1 3547
2 TraesCS4D01G054300 chr4A 572840921 572844239 3318 False 836.0000 1857 86.913500 303 3162 4 chr4A.!!$F1 2859

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 124 0.033504 ACTTCGTCGAGCACACCATT 59.966 50.0 0.00 0.00 0.00 3.16 F
181 182 0.587768 CGAGAGTGTTGCATGCACAA 59.412 50.0 22.58 8.85 39.17 3.33 F
814 1049 0.812811 GTCGAAAGGGGATTACGGCC 60.813 60.0 0.00 0.00 0.00 6.13 F
976 1218 1.019278 TTCCTGCCAAGACGAATCGC 61.019 55.0 1.15 0.00 0.00 4.58 F
1485 1952 1.178534 CCCGGTGTTGCTGTTCCAAT 61.179 55.0 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1185 1431 1.067416 CGAAGCTAGCATACCGGCA 59.933 57.895 18.83 0.0 35.83 5.69 R
1459 1772 1.074072 AGCAACACCGGGCAATACA 59.926 52.632 6.32 0.0 0.00 2.29 R
2269 3506 0.251916 TGGACAGAAATAGCACCCCG 59.748 55.000 0.00 0.0 0.00 5.73 R
2673 3911 1.003545 CACAAACTCTGACCTGCAACG 60.004 52.381 0.00 0.0 0.00 4.10 R
3473 4739 0.107831 AGCCAAACGTAGCTGGTTGA 59.892 50.000 3.47 0.0 38.11 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.974156 TGGTCAAATTGATGATCTAGGGA 57.026 39.130 0.00 0.00 31.51 4.20
24 25 6.520021 TGGTCAAATTGATGATCTAGGGAT 57.480 37.500 0.00 0.00 31.51 3.85
25 26 7.631510 TGGTCAAATTGATGATCTAGGGATA 57.368 36.000 0.00 0.00 31.51 2.59
26 27 7.453393 TGGTCAAATTGATGATCTAGGGATAC 58.547 38.462 0.00 0.00 31.51 2.24
27 28 6.591834 GGTCAAATTGATGATCTAGGGATACG 59.408 42.308 0.00 0.00 37.60 3.06
28 29 6.091441 GTCAAATTGATGATCTAGGGATACGC 59.909 42.308 0.00 0.00 37.60 4.42
29 30 3.850122 TTGATGATCTAGGGATACGCG 57.150 47.619 3.53 3.53 37.60 6.01
30 31 1.472878 TGATGATCTAGGGATACGCGC 59.527 52.381 5.73 0.00 37.60 6.86
31 32 1.472878 GATGATCTAGGGATACGCGCA 59.527 52.381 5.73 0.00 37.60 6.09
32 33 0.596577 TGATCTAGGGATACGCGCAC 59.403 55.000 5.73 0.00 37.60 5.34
33 34 0.454620 GATCTAGGGATACGCGCACG 60.455 60.000 5.73 0.00 37.56 5.34
34 35 2.473664 ATCTAGGGATACGCGCACGC 62.474 60.000 5.73 4.64 45.53 5.34
35 36 4.274700 TAGGGATACGCGCACGCC 62.275 66.667 5.73 2.11 45.53 5.68
40 41 3.761445 GATACGCGCACGCCCTGTA 62.761 63.158 5.73 6.59 45.53 2.74
41 42 3.359515 ATACGCGCACGCCCTGTAA 62.360 57.895 5.73 0.00 45.53 2.41
42 43 2.839043 ATACGCGCACGCCCTGTAAA 62.839 55.000 5.73 0.00 45.53 2.01
43 44 4.439472 CGCGCACGCCCTGTAAAC 62.439 66.667 8.75 0.00 37.98 2.01
44 45 3.047877 GCGCACGCCCTGTAAACT 61.048 61.111 0.30 0.00 34.56 2.66
45 46 2.860293 CGCACGCCCTGTAAACTG 59.140 61.111 0.00 0.00 0.00 3.16
46 47 1.959226 CGCACGCCCTGTAAACTGT 60.959 57.895 0.00 0.00 0.00 3.55
47 48 1.574428 GCACGCCCTGTAAACTGTG 59.426 57.895 0.00 0.00 0.00 3.66
48 49 0.882927 GCACGCCCTGTAAACTGTGA 60.883 55.000 0.00 0.00 0.00 3.58
49 50 1.148310 CACGCCCTGTAAACTGTGAG 58.852 55.000 0.00 0.00 0.00 3.51
50 51 1.045407 ACGCCCTGTAAACTGTGAGA 58.955 50.000 0.00 0.00 0.00 3.27
51 52 1.000955 ACGCCCTGTAAACTGTGAGAG 59.999 52.381 0.00 0.00 0.00 3.20
52 53 1.272490 CGCCCTGTAAACTGTGAGAGA 59.728 52.381 0.00 0.00 0.00 3.10
53 54 2.672478 CGCCCTGTAAACTGTGAGAGAG 60.672 54.545 0.00 0.00 0.00 3.20
54 55 2.354203 GCCCTGTAAACTGTGAGAGAGG 60.354 54.545 0.00 0.00 0.00 3.69
55 56 2.900546 CCCTGTAAACTGTGAGAGAGGT 59.099 50.000 0.00 0.00 0.00 3.85
56 57 3.306364 CCCTGTAAACTGTGAGAGAGGTG 60.306 52.174 0.00 0.00 0.00 4.00
57 58 3.322254 CCTGTAAACTGTGAGAGAGGTGT 59.678 47.826 0.00 0.00 0.00 4.16
58 59 4.523173 CCTGTAAACTGTGAGAGAGGTGTA 59.477 45.833 0.00 0.00 0.00 2.90
80 81 5.450818 AGTATGTTTGGAGGATGCCTTTA 57.549 39.130 0.00 0.00 31.76 1.85
109 110 1.469940 CCGAGGATCTGACCAACTTCG 60.470 57.143 0.00 0.00 0.00 3.79
118 119 0.596600 GACCAACTTCGTCGAGCACA 60.597 55.000 0.00 0.00 0.00 4.57
123 124 0.033504 ACTTCGTCGAGCACACCATT 59.966 50.000 0.00 0.00 0.00 3.16
127 128 0.930310 CGTCGAGCACACCATTATGG 59.070 55.000 10.08 10.08 45.02 2.74
165 166 4.645588 AGAGTTACTCCCTTCCAATACGAG 59.354 45.833 8.96 0.00 0.00 4.18
181 182 0.587768 CGAGAGTGTTGCATGCACAA 59.412 50.000 22.58 8.85 39.17 3.33
190 191 3.006003 TGTTGCATGCACAATCTGTTCAT 59.994 39.130 22.58 0.00 34.67 2.57
199 200 2.679837 ACAATCTGTTCATGCACGATCC 59.320 45.455 0.00 0.00 0.00 3.36
226 227 2.282555 CGACATGATTAGAAGCCACACG 59.717 50.000 0.00 0.00 0.00 4.49
227 228 2.609459 GACATGATTAGAAGCCACACGG 59.391 50.000 0.00 0.00 0.00 4.94
232 233 4.331968 TGATTAGAAGCCACACGGATTTT 58.668 39.130 0.00 0.00 42.32 1.82
306 498 2.307098 AGCAGTGCTCTTCCAATAAGGT 59.693 45.455 13.14 0.00 33.90 3.50
409 601 9.065871 CCATAAAAAGCTTTCTTCAAATACGAG 57.934 33.333 13.10 0.00 0.00 4.18
413 605 5.517037 AGCTTTCTTCAAATACGAGTTCG 57.483 39.130 0.00 0.00 46.33 3.95
417 609 6.403333 TTTCTTCAAATACGAGTTCGATGG 57.597 37.500 8.72 0.00 43.02 3.51
421 613 6.695713 TCTTCAAATACGAGTTCGATGGTATG 59.304 38.462 8.72 0.55 43.02 2.39
460 652 4.244066 ACCCACGTTTTGTTTGTTAAACC 58.756 39.130 2.36 0.00 40.67 3.27
462 654 3.303760 CCACGTTTTGTTTGTTAAACCGG 59.696 43.478 0.00 0.00 40.67 5.28
483 677 4.616953 GGTGGTCAAACACGATTTCAAAT 58.383 39.130 0.00 0.00 42.23 2.32
494 688 6.734137 ACACGATTTCAAATTGTATGTGTGT 58.266 32.000 2.45 9.06 36.74 3.72
509 710 8.226819 TGTATGTGTGTCTTATTCACCAAAAA 57.773 30.769 0.00 0.00 35.25 1.94
574 776 1.446966 GGAGCTTGAGACACCGAGC 60.447 63.158 0.00 0.00 42.52 5.03
578 780 1.079543 CTTGAGACACCGAGCCAGG 60.080 63.158 0.00 0.00 37.30 4.45
814 1049 0.812811 GTCGAAAGGGGATTACGGCC 60.813 60.000 0.00 0.00 0.00 6.13
885 1126 2.128507 GCCCTCGATCGGAGACCTT 61.129 63.158 16.41 0.00 46.23 3.50
976 1218 1.019278 TTCCTGCCAAGACGAATCGC 61.019 55.000 1.15 0.00 0.00 4.58
1185 1431 3.458189 GCTGTCCTACACGCTGAATTAT 58.542 45.455 0.00 0.00 0.00 1.28
1258 1504 1.380403 TTGTTGCTGGTGGTTCGGTG 61.380 55.000 0.00 0.00 0.00 4.94
1277 1581 3.691609 GGTGTTTTAGAGGGATGAAGCTG 59.308 47.826 0.00 0.00 0.00 4.24
1278 1582 4.327680 GTGTTTTAGAGGGATGAAGCTGT 58.672 43.478 0.00 0.00 0.00 4.40
1280 1584 3.526931 TTTAGAGGGATGAAGCTGTCG 57.473 47.619 0.00 0.00 0.00 4.35
1312 1616 8.649810 GCATCTTGCAAAATTTTGTTTAGATG 57.350 30.769 33.72 33.72 44.26 2.90
1345 1649 5.172205 TGTTACAGCGATATACACAGCAAA 58.828 37.500 0.00 0.00 0.00 3.68
1353 1657 5.465390 GCGATATACACAGCAAACCTAATGA 59.535 40.000 0.00 0.00 0.00 2.57
1354 1658 6.018262 GCGATATACACAGCAAACCTAATGAA 60.018 38.462 0.00 0.00 0.00 2.57
1357 1661 9.884465 GATATACACAGCAAACCTAATGAAATC 57.116 33.333 0.00 0.00 0.00 2.17
1459 1772 7.779798 AGGTTCAACTGGTATATATTGCATGTT 59.220 33.333 0.00 0.00 0.00 2.71
1460 1773 7.862372 GGTTCAACTGGTATATATTGCATGTTG 59.138 37.037 0.00 0.00 35.15 3.33
1485 1952 1.178534 CCCGGTGTTGCTGTTCCAAT 61.179 55.000 0.00 0.00 0.00 3.16
1524 1991 7.885399 AGTTAATTAGTTCAGCATTTCAGAGGT 59.115 33.333 0.00 0.00 0.00 3.85
1621 2089 5.914898 AACCTAGTGAATTAAATGGCCAC 57.085 39.130 8.16 0.00 0.00 5.01
1704 2173 3.565764 TGGCCAGATAATCTCACCAAG 57.434 47.619 0.00 0.00 28.59 3.61
1747 2216 4.137543 GGTAATCAATCTGTCCATGTCCC 58.862 47.826 0.00 0.00 0.00 4.46
1834 2303 5.849858 TCATAAGTTACAACGTGAAATCGC 58.150 37.500 0.00 0.00 0.00 4.58
1837 2567 3.128349 AGTTACAACGTGAAATCGCTGT 58.872 40.909 0.00 0.00 41.71 4.40
1848 2578 5.393452 CGTGAAATCGCTGTTATATTGCTTG 59.607 40.000 0.00 0.00 0.00 4.01
1887 2617 5.765510 TCCAACATCTAATATGCAGGGTTT 58.234 37.500 0.00 0.00 0.00 3.27
1910 2640 8.711457 GTTTCATGCTGTATATTTTGTTTGCTT 58.289 29.630 0.00 0.00 0.00 3.91
1951 2683 2.802816 GCGAGGCCATGATGTTTAGTAG 59.197 50.000 5.01 0.00 0.00 2.57
1966 2699 5.404366 TGTTTAGTAGTCTGAACATTCGTGC 59.596 40.000 2.34 0.00 42.45 5.34
1978 2711 2.035961 ACATTCGTGCGATATGTAGGCT 59.964 45.455 15.26 0.00 31.11 4.58
2040 2773 5.139727 ACATCTGGTTGAACAATTTCTCCA 58.860 37.500 0.00 0.00 36.11 3.86
2099 2832 1.543802 TGTCATAAAAAGCCTTGCCCG 59.456 47.619 0.00 0.00 0.00 6.13
2258 3495 4.100963 ACCGTAGCATTGGTCAGATATTCA 59.899 41.667 0.00 0.00 31.16 2.57
2275 3512 8.289618 CAGATATTCATACAAATTAACGGGGTG 58.710 37.037 0.00 0.00 0.00 4.61
2354 3591 9.529325 AGAACTTTTGAGCCTAATTTAACAAAC 57.471 29.630 0.00 0.00 0.00 2.93
2395 3632 7.278135 ACTGTAGCATCATCTTATCATTGTGT 58.722 34.615 0.00 0.00 0.00 3.72
2413 3650 4.744570 TGTGTAGATTGAACTAGCTTCCG 58.255 43.478 0.00 0.00 0.00 4.30
2447 3684 1.282875 GTTTTCTGCTGTCCGTGCC 59.717 57.895 0.00 0.00 0.00 5.01
2578 3815 3.338249 CACCAAGATGGACTTCGTTGAT 58.662 45.455 2.85 0.00 40.96 2.57
2587 3824 3.190874 GGACTTCGTTGATGATCCACTC 58.809 50.000 0.00 0.00 0.00 3.51
2592 3829 3.361786 TCGTTGATGATCCACTCAGGTA 58.638 45.455 0.00 0.00 37.28 3.08
2593 3830 3.960755 TCGTTGATGATCCACTCAGGTAT 59.039 43.478 0.00 0.00 37.28 2.73
2602 3840 4.603094 TCCACTCAGGTATGGTCTCTAA 57.397 45.455 0.00 0.00 39.02 2.10
2611 3849 6.667848 TCAGGTATGGTCTCTAATTTCTGTGA 59.332 38.462 0.00 0.00 0.00 3.58
2664 3902 6.403878 GCTTACCTCTTGTTGGTTACTGATA 58.596 40.000 0.00 0.00 38.88 2.15
2673 3911 2.985896 TGGTTACTGATAGTGGCTTGC 58.014 47.619 0.00 0.00 0.00 4.01
2984 4222 0.317519 GCCCTGTGTTGTTGTTACGC 60.318 55.000 0.00 0.00 0.00 4.42
3060 4309 9.624373 ACATAGAAAGCATTCTTCTGATACAAT 57.376 29.630 9.82 0.00 43.43 2.71
3116 4366 9.458727 AAGGATGTATCTATGGCATTTATCTTG 57.541 33.333 4.78 0.00 0.00 3.02
3266 4525 1.339055 CGAATTCTTGGCAGACCTGGA 60.339 52.381 0.00 0.00 36.63 3.86
3276 4535 1.453155 CAGACCTGGAACCGGAATTG 58.547 55.000 9.46 0.00 0.00 2.32
3308 4567 1.247567 AGCCAGGCAACATAACACAC 58.752 50.000 15.80 0.00 41.41 3.82
3321 4580 4.568359 ACATAACACACTGAAGATCGCATC 59.432 41.667 0.00 0.00 0.00 3.91
3322 4581 3.325293 AACACACTGAAGATCGCATCT 57.675 42.857 0.00 0.00 42.61 2.90
3324 4583 2.232208 ACACACTGAAGATCGCATCTGA 59.768 45.455 9.06 0.00 40.13 3.27
3326 4585 4.098501 ACACACTGAAGATCGCATCTGATA 59.901 41.667 9.06 0.00 40.13 2.15
3342 4601 8.430828 CGCATCTGATATTACTGTCAGTAATTG 58.569 37.037 32.82 25.60 46.17 2.32
3373 4632 4.383649 CGATTGCATTGGAAGTTTGAACTG 59.616 41.667 0.00 0.00 39.66 3.16
3379 4638 5.535333 CATTGGAAGTTTGAACTGCAGAAT 58.465 37.500 23.35 8.80 39.66 2.40
3383 4642 6.680810 TGGAAGTTTGAACTGCAGAATATTG 58.319 36.000 23.35 0.00 39.66 1.90
3398 4664 8.278482 GCAGAATATTGCATGTTTTCATAGAC 57.722 34.615 0.00 0.00 43.53 2.59
3406 4672 8.621532 TTGCATGTTTTCATAGACTAGTTTCT 57.378 30.769 0.00 0.00 38.64 2.52
3422 4688 5.186996 AGTTTCTGTTTGCCATACACTTG 57.813 39.130 0.00 0.00 0.00 3.16
3423 4689 4.887071 AGTTTCTGTTTGCCATACACTTGA 59.113 37.500 0.00 0.00 0.00 3.02
3424 4690 4.829064 TTCTGTTTGCCATACACTTGAC 57.171 40.909 0.00 0.00 0.00 3.18
3427 4693 2.546368 TGTTTGCCATACACTTGACGAC 59.454 45.455 0.00 0.00 0.00 4.34
3474 4740 3.195698 GCGTTCCTGCCACCGATC 61.196 66.667 0.00 0.00 0.00 3.69
3475 4741 2.264480 CGTTCCTGCCACCGATCA 59.736 61.111 0.00 0.00 0.00 2.92
3476 4742 1.375396 CGTTCCTGCCACCGATCAA 60.375 57.895 0.00 0.00 0.00 2.57
3477 4743 1.635663 CGTTCCTGCCACCGATCAAC 61.636 60.000 0.00 0.00 0.00 3.18
3478 4744 1.002624 TTCCTGCCACCGATCAACC 60.003 57.895 0.00 0.00 0.00 3.77
3479 4745 1.773856 TTCCTGCCACCGATCAACCA 61.774 55.000 0.00 0.00 0.00 3.67
3480 4746 1.746615 CCTGCCACCGATCAACCAG 60.747 63.158 0.00 0.00 0.00 4.00
3481 4747 2.359850 TGCCACCGATCAACCAGC 60.360 61.111 0.00 0.00 0.00 4.85
3482 4748 2.045926 GCCACCGATCAACCAGCT 60.046 61.111 0.00 0.00 0.00 4.24
3483 4749 1.220749 GCCACCGATCAACCAGCTA 59.779 57.895 0.00 0.00 0.00 3.32
3484 4750 1.090052 GCCACCGATCAACCAGCTAC 61.090 60.000 0.00 0.00 0.00 3.58
3485 4751 0.806102 CCACCGATCAACCAGCTACG 60.806 60.000 0.00 0.00 0.00 3.51
3486 4752 0.108804 CACCGATCAACCAGCTACGT 60.109 55.000 0.00 0.00 0.00 3.57
3487 4753 0.606604 ACCGATCAACCAGCTACGTT 59.393 50.000 0.00 0.00 0.00 3.99
3488 4754 1.001633 ACCGATCAACCAGCTACGTTT 59.998 47.619 0.00 0.00 0.00 3.60
3489 4755 1.393539 CCGATCAACCAGCTACGTTTG 59.606 52.381 0.00 0.00 0.00 2.93
3490 4756 1.393539 CGATCAACCAGCTACGTTTGG 59.606 52.381 10.74 10.74 40.38 3.28
3491 4757 1.130561 GATCAACCAGCTACGTTTGGC 59.869 52.381 11.88 6.56 38.03 4.52
3492 4758 0.107831 TCAACCAGCTACGTTTGGCT 59.892 50.000 11.88 8.51 38.03 4.75
3497 4763 3.047877 GCTACGTTTGGCTGCCGT 61.048 61.111 14.98 10.42 38.53 5.68
3498 4764 3.023591 GCTACGTTTGGCTGCCGTC 62.024 63.158 14.98 5.88 36.12 4.79
3499 4765 2.357760 TACGTTTGGCTGCCGTCC 60.358 61.111 14.98 2.65 36.12 4.79
3501 4767 3.726517 CGTTTGGCTGCCGTCCTG 61.727 66.667 14.98 0.00 0.00 3.86
3502 4768 4.043200 GTTTGGCTGCCGTCCTGC 62.043 66.667 14.98 0.00 37.64 4.85
3503 4769 4.269523 TTTGGCTGCCGTCCTGCT 62.270 61.111 14.98 0.00 38.35 4.24
3504 4770 2.889606 TTTGGCTGCCGTCCTGCTA 61.890 57.895 14.98 0.00 38.35 3.49
3505 4771 2.803155 TTTGGCTGCCGTCCTGCTAG 62.803 60.000 14.98 0.00 38.35 3.42
3506 4772 3.775654 GGCTGCCGTCCTGCTAGT 61.776 66.667 1.35 0.00 38.35 2.57
3507 4773 2.423898 GGCTGCCGTCCTGCTAGTA 61.424 63.158 1.35 0.00 38.35 1.82
3508 4774 1.515954 GCTGCCGTCCTGCTAGTAA 59.484 57.895 0.00 0.00 35.71 2.24
3509 4775 0.528684 GCTGCCGTCCTGCTAGTAAG 60.529 60.000 0.00 0.00 35.71 2.34
3510 4776 1.103803 CTGCCGTCCTGCTAGTAAGA 58.896 55.000 0.00 0.00 0.00 2.10
3513 4779 1.409427 GCCGTCCTGCTAGTAAGATGT 59.591 52.381 0.00 0.00 0.00 3.06
3514 4780 2.159085 GCCGTCCTGCTAGTAAGATGTT 60.159 50.000 0.00 0.00 0.00 2.71
3515 4781 3.067742 GCCGTCCTGCTAGTAAGATGTTA 59.932 47.826 0.00 0.00 0.00 2.41
3518 4784 5.274718 CGTCCTGCTAGTAAGATGTTACTG 58.725 45.833 22.08 13.99 46.91 2.74
3519 4785 5.044558 GTCCTGCTAGTAAGATGTTACTGC 58.955 45.833 22.08 21.08 46.91 4.40
3521 4787 6.039493 GTCCTGCTAGTAAGATGTTACTGCTA 59.961 42.308 22.08 13.35 46.91 3.49
3523 4789 6.145338 TGCTAGTAAGATGTTACTGCTACC 57.855 41.667 22.08 8.54 46.91 3.18
3525 4791 5.978322 GCTAGTAAGATGTTACTGCTACCAC 59.022 44.000 22.08 3.58 46.91 4.16
3526 4792 4.995124 AGTAAGATGTTACTGCTACCACG 58.005 43.478 14.08 0.00 45.99 4.94
3527 4793 4.703575 AGTAAGATGTTACTGCTACCACGA 59.296 41.667 14.08 0.00 45.99 4.35
3528 4794 3.505464 AGATGTTACTGCTACCACGAC 57.495 47.619 0.00 0.00 0.00 4.34
3529 4795 2.159421 AGATGTTACTGCTACCACGACG 60.159 50.000 0.00 0.00 0.00 5.12
3530 4796 0.241749 TGTTACTGCTACCACGACGG 59.758 55.000 0.00 0.00 42.50 4.79
3543 4809 3.041940 GACGGTGAGGCGGTTGTG 61.042 66.667 0.00 0.00 0.00 3.33
3554 4820 2.034879 CGGTTGTGCGGCTGATCTT 61.035 57.895 0.00 0.00 0.00 2.40
3555 4821 1.503542 GGTTGTGCGGCTGATCTTG 59.496 57.895 0.00 0.00 0.00 3.02
3556 4822 1.503542 GTTGTGCGGCTGATCTTGG 59.496 57.895 0.00 0.00 0.00 3.61
3557 4823 0.955428 GTTGTGCGGCTGATCTTGGA 60.955 55.000 0.00 0.00 0.00 3.53
3558 4824 0.674581 TTGTGCGGCTGATCTTGGAG 60.675 55.000 0.00 0.00 0.00 3.86
3601 4909 6.358178 TGAATTACCAGTGTCCAACTACAAA 58.642 36.000 0.00 0.00 36.83 2.83
3607 4915 4.539870 CAGTGTCCAACTACAAAGCAATG 58.460 43.478 0.00 0.00 36.83 2.82
3608 4916 3.004734 AGTGTCCAACTACAAAGCAATGC 59.995 43.478 0.00 0.00 37.36 3.56
3609 4917 2.295909 TGTCCAACTACAAAGCAATGCC 59.704 45.455 0.00 0.00 0.00 4.40
3610 4918 2.558359 GTCCAACTACAAAGCAATGCCT 59.442 45.455 0.00 0.00 0.00 4.75
3611 4919 2.557924 TCCAACTACAAAGCAATGCCTG 59.442 45.455 0.00 2.11 0.00 4.85
3620 4928 2.882876 CAATGCCTGCTGGACTGC 59.117 61.111 14.77 0.00 34.57 4.40
3621 4929 1.974875 CAATGCCTGCTGGACTGCA 60.975 57.895 14.77 4.20 41.05 4.41
3622 4930 1.228644 AATGCCTGCTGGACTGCAA 60.229 52.632 14.77 0.00 42.83 4.08
3623 4931 1.530013 AATGCCTGCTGGACTGCAAC 61.530 55.000 14.77 2.03 42.83 4.17
3624 4932 3.730761 GCCTGCTGGACTGCAACG 61.731 66.667 14.77 0.58 42.83 4.10
3625 4933 3.052082 CCTGCTGGACTGCAACGG 61.052 66.667 2.92 0.99 42.83 4.44
3626 4934 3.052082 CTGCTGGACTGCAACGGG 61.052 66.667 5.42 0.00 42.83 5.28
3627 4935 3.535629 CTGCTGGACTGCAACGGGA 62.536 63.158 5.42 0.00 42.83 5.14
3628 4936 2.281484 GCTGGACTGCAACGGGAA 60.281 61.111 0.00 0.00 0.00 3.97
3629 4937 2.617274 GCTGGACTGCAACGGGAAC 61.617 63.158 0.00 0.00 0.00 3.62
3630 4938 1.071471 CTGGACTGCAACGGGAACT 59.929 57.895 0.00 0.00 0.00 3.01
3631 4939 1.227823 TGGACTGCAACGGGAACTG 60.228 57.895 0.00 0.00 42.99 3.16
3632 4940 1.070786 GGACTGCAACGGGAACTGA 59.929 57.895 0.00 0.00 38.67 3.41
3633 4941 0.534203 GGACTGCAACGGGAACTGAA 60.534 55.000 0.00 0.00 38.67 3.02
3634 4942 1.305201 GACTGCAACGGGAACTGAAA 58.695 50.000 0.00 0.00 38.67 2.69
3635 4943 1.880027 GACTGCAACGGGAACTGAAAT 59.120 47.619 0.00 0.00 38.67 2.17
3636 4944 2.293399 GACTGCAACGGGAACTGAAATT 59.707 45.455 0.00 0.00 38.67 1.82
3637 4945 2.034558 ACTGCAACGGGAACTGAAATTG 59.965 45.455 0.00 0.00 38.67 2.32
3638 4946 1.269517 TGCAACGGGAACTGAAATTGC 60.270 47.619 0.00 0.00 42.13 3.56
3639 4947 1.269517 GCAACGGGAACTGAAATTGCA 60.270 47.619 0.00 0.00 41.56 4.08
3640 4948 2.610232 GCAACGGGAACTGAAATTGCAT 60.610 45.455 0.00 0.00 41.56 3.96
3641 4949 2.988493 CAACGGGAACTGAAATTGCATG 59.012 45.455 0.00 0.00 38.67 4.06
3642 4950 2.513753 ACGGGAACTGAAATTGCATGA 58.486 42.857 0.00 0.00 38.67 3.07
3643 4951 2.890311 ACGGGAACTGAAATTGCATGAA 59.110 40.909 0.00 0.00 38.67 2.57
3644 4952 3.511146 ACGGGAACTGAAATTGCATGAAT 59.489 39.130 0.00 0.00 38.67 2.57
3645 4953 4.704540 ACGGGAACTGAAATTGCATGAATA 59.295 37.500 0.00 0.00 38.67 1.75
3646 4954 5.036737 CGGGAACTGAAATTGCATGAATAC 58.963 41.667 0.00 0.00 36.31 1.89
3647 4955 5.163622 CGGGAACTGAAATTGCATGAATACT 60.164 40.000 0.00 0.00 36.31 2.12
3648 4956 6.038356 GGGAACTGAAATTGCATGAATACTG 58.962 40.000 0.00 0.26 0.00 2.74
3649 4957 6.350445 GGGAACTGAAATTGCATGAATACTGT 60.350 38.462 0.00 0.00 0.00 3.55
3650 4958 6.749118 GGAACTGAAATTGCATGAATACTGTC 59.251 38.462 0.00 0.00 0.00 3.51
3651 4959 5.872635 ACTGAAATTGCATGAATACTGTCG 58.127 37.500 0.00 0.00 0.00 4.35
3652 4960 4.661125 TGAAATTGCATGAATACTGTCGC 58.339 39.130 0.00 0.00 0.00 5.19
3653 4961 4.155644 TGAAATTGCATGAATACTGTCGCA 59.844 37.500 0.00 0.00 0.00 5.10
3654 4962 4.906065 AATTGCATGAATACTGTCGCAT 57.094 36.364 0.00 0.00 0.00 4.73
3655 4963 4.906065 ATTGCATGAATACTGTCGCATT 57.094 36.364 0.00 0.00 0.00 3.56
3656 4964 4.700268 TTGCATGAATACTGTCGCATTT 57.300 36.364 0.00 0.00 0.00 2.32
3657 4965 4.277257 TGCATGAATACTGTCGCATTTC 57.723 40.909 0.00 0.00 0.00 2.17
3658 4966 3.242381 TGCATGAATACTGTCGCATTTCG 60.242 43.478 0.00 0.00 40.15 3.46
3659 4967 3.001228 GCATGAATACTGTCGCATTTCGA 59.999 43.478 0.00 0.00 46.29 3.71
3671 4979 4.717991 TCGCATTTCGAGTACCAAAAATG 58.282 39.130 15.10 15.10 43.16 2.32
3672 4980 3.851403 CGCATTTCGAGTACCAAAAATGG 59.149 43.478 18.49 10.07 38.77 3.16
3673 4981 4.378978 CGCATTTCGAGTACCAAAAATGGA 60.379 41.667 18.49 0.00 38.77 3.41
3674 4982 5.650543 GCATTTCGAGTACCAAAAATGGAT 58.349 37.500 18.49 0.00 38.77 3.41
3675 4983 5.516339 GCATTTCGAGTACCAAAAATGGATG 59.484 40.000 18.49 0.00 38.77 3.51
3676 4984 6.620678 CATTTCGAGTACCAAAAATGGATGT 58.379 36.000 12.97 0.00 36.12 3.06
3677 4985 5.621197 TTCGAGTACCAAAAATGGATGTG 57.379 39.130 1.10 0.00 0.00 3.21
3678 4986 3.438781 TCGAGTACCAAAAATGGATGTGC 59.561 43.478 1.10 0.00 0.00 4.57
3679 4987 3.190327 CGAGTACCAAAAATGGATGTGCA 59.810 43.478 1.10 0.00 0.00 4.57
3680 4988 4.672542 CGAGTACCAAAAATGGATGTGCAG 60.673 45.833 1.10 0.00 0.00 4.41
3681 4989 4.151883 AGTACCAAAAATGGATGTGCAGT 58.848 39.130 1.10 0.00 0.00 4.40
3682 4990 3.389925 ACCAAAAATGGATGTGCAGTG 57.610 42.857 1.10 0.00 0.00 3.66
3683 4991 2.070783 CCAAAAATGGATGTGCAGTGC 58.929 47.619 8.58 8.58 0.00 4.40
3684 4992 1.722464 CAAAAATGGATGTGCAGTGCG 59.278 47.619 11.20 0.00 0.00 5.34
3685 4993 1.246649 AAAATGGATGTGCAGTGCGA 58.753 45.000 11.20 0.00 0.00 5.10
3686 4994 1.466856 AAATGGATGTGCAGTGCGAT 58.533 45.000 11.20 4.78 0.00 4.58
3687 4995 1.466856 AATGGATGTGCAGTGCGATT 58.533 45.000 11.20 0.00 0.00 3.34
3688 4996 2.330440 ATGGATGTGCAGTGCGATTA 57.670 45.000 11.20 0.00 0.00 1.75
3689 4997 1.655484 TGGATGTGCAGTGCGATTAG 58.345 50.000 11.20 0.00 0.00 1.73
3690 4998 0.940126 GGATGTGCAGTGCGATTAGG 59.060 55.000 11.20 0.00 0.00 2.69
3691 4999 1.473257 GGATGTGCAGTGCGATTAGGA 60.473 52.381 11.20 0.00 0.00 2.94
3692 5000 2.279741 GATGTGCAGTGCGATTAGGAA 58.720 47.619 11.20 0.00 0.00 3.36
3693 5001 2.177394 TGTGCAGTGCGATTAGGAAA 57.823 45.000 11.20 0.00 0.00 3.13
3694 5002 2.076100 TGTGCAGTGCGATTAGGAAAG 58.924 47.619 11.20 0.00 0.00 2.62
3695 5003 1.398390 GTGCAGTGCGATTAGGAAAGG 59.602 52.381 11.20 0.00 0.00 3.11
3696 5004 1.277842 TGCAGTGCGATTAGGAAAGGA 59.722 47.619 11.20 0.00 0.00 3.36
3697 5005 2.290008 TGCAGTGCGATTAGGAAAGGAA 60.290 45.455 11.20 0.00 0.00 3.36
3698 5006 2.352960 GCAGTGCGATTAGGAAAGGAAG 59.647 50.000 0.00 0.00 0.00 3.46
3699 5007 2.352960 CAGTGCGATTAGGAAAGGAAGC 59.647 50.000 0.00 0.00 0.00 3.86
3700 5008 2.027192 AGTGCGATTAGGAAAGGAAGCA 60.027 45.455 0.00 0.00 0.00 3.91
3701 5009 2.945668 GTGCGATTAGGAAAGGAAGCAT 59.054 45.455 0.00 0.00 35.76 3.79
3702 5010 4.127171 GTGCGATTAGGAAAGGAAGCATA 58.873 43.478 0.00 0.00 35.76 3.14
3703 5011 4.757149 GTGCGATTAGGAAAGGAAGCATAT 59.243 41.667 0.00 0.00 35.76 1.78
3704 5012 4.997395 TGCGATTAGGAAAGGAAGCATATC 59.003 41.667 0.00 0.00 0.00 1.63
3705 5013 4.997395 GCGATTAGGAAAGGAAGCATATCA 59.003 41.667 0.00 0.00 0.00 2.15
3706 5014 5.121454 GCGATTAGGAAAGGAAGCATATCAG 59.879 44.000 0.00 0.00 0.00 2.90
3707 5015 5.121454 CGATTAGGAAAGGAAGCATATCAGC 59.879 44.000 0.00 0.00 0.00 4.26
3708 5016 3.220674 AGGAAAGGAAGCATATCAGCC 57.779 47.619 0.00 0.00 34.23 4.85
3709 5017 2.511218 AGGAAAGGAAGCATATCAGCCA 59.489 45.455 0.00 0.00 34.23 4.75
3710 5018 3.139770 AGGAAAGGAAGCATATCAGCCAT 59.860 43.478 0.00 0.00 34.23 4.40
3711 5019 3.255149 GGAAAGGAAGCATATCAGCCATG 59.745 47.826 0.00 0.00 34.23 3.66
3712 5020 3.870538 AAGGAAGCATATCAGCCATGA 57.129 42.857 0.00 0.00 40.50 3.07
3713 5021 3.870538 AGGAAGCATATCAGCCATGAA 57.129 42.857 0.00 0.00 39.39 2.57
3714 5022 4.174704 AGGAAGCATATCAGCCATGAAA 57.825 40.909 0.00 0.00 39.39 2.69
3715 5023 3.887716 AGGAAGCATATCAGCCATGAAAC 59.112 43.478 0.00 0.00 39.39 2.78
3716 5024 3.633525 GGAAGCATATCAGCCATGAAACA 59.366 43.478 0.00 0.00 39.39 2.83
3717 5025 4.261489 GGAAGCATATCAGCCATGAAACAG 60.261 45.833 0.00 0.00 39.39 3.16
3718 5026 4.160642 AGCATATCAGCCATGAAACAGA 57.839 40.909 0.00 0.00 39.39 3.41
3719 5027 4.529897 AGCATATCAGCCATGAAACAGAA 58.470 39.130 0.00 0.00 39.39 3.02
3720 5028 4.579340 AGCATATCAGCCATGAAACAGAAG 59.421 41.667 0.00 0.00 39.39 2.85
3721 5029 4.577693 GCATATCAGCCATGAAACAGAAGA 59.422 41.667 0.00 0.00 39.39 2.87
3722 5030 5.505324 GCATATCAGCCATGAAACAGAAGAC 60.505 44.000 0.00 0.00 39.39 3.01
3723 5031 3.777106 TCAGCCATGAAACAGAAGACT 57.223 42.857 0.00 0.00 30.61 3.24
3724 5032 3.405831 TCAGCCATGAAACAGAAGACTG 58.594 45.455 0.00 0.00 40.16 3.51
3725 5033 3.808265 TCAGCCATGAAACAGAAGACTGG 60.808 47.826 0.00 0.00 39.33 4.00
3726 5034 6.857492 TCAGCCATGAAACAGAAGACTGGG 62.857 50.000 0.00 0.00 39.33 4.45
3735 5043 3.971032 CAGAAGACTGGGACAACAAAC 57.029 47.619 0.00 0.00 38.70 2.93
3736 5044 3.278574 CAGAAGACTGGGACAACAAACA 58.721 45.455 0.00 0.00 38.70 2.83
3737 5045 3.694072 CAGAAGACTGGGACAACAAACAA 59.306 43.478 0.00 0.00 38.70 2.83
3738 5046 4.157656 CAGAAGACTGGGACAACAAACAAA 59.842 41.667 0.00 0.00 38.70 2.83
3739 5047 4.157840 AGAAGACTGGGACAACAAACAAAC 59.842 41.667 0.00 0.00 38.70 2.93
3740 5048 3.426615 AGACTGGGACAACAAACAAACA 58.573 40.909 0.00 0.00 38.70 2.83
3741 5049 3.443681 AGACTGGGACAACAAACAAACAG 59.556 43.478 0.00 0.00 38.70 3.16
3742 5050 3.161866 ACTGGGACAACAAACAAACAGT 58.838 40.909 0.00 0.00 38.70 3.55
3743 5051 4.337145 ACTGGGACAACAAACAAACAGTA 58.663 39.130 0.00 0.00 38.70 2.74
3744 5052 4.767928 ACTGGGACAACAAACAAACAGTAA 59.232 37.500 0.00 0.00 38.70 2.24
3745 5053 5.420739 ACTGGGACAACAAACAAACAGTAAT 59.579 36.000 0.00 0.00 38.70 1.89
3746 5054 5.655488 TGGGACAACAAACAAACAGTAATG 58.345 37.500 0.00 0.00 31.92 1.90
3747 5055 5.419155 TGGGACAACAAACAAACAGTAATGA 59.581 36.000 0.00 0.00 31.92 2.57
3748 5056 6.071334 TGGGACAACAAACAAACAGTAATGAA 60.071 34.615 0.00 0.00 31.92 2.57
3749 5057 6.814146 GGGACAACAAACAAACAGTAATGAAA 59.186 34.615 0.00 0.00 0.00 2.69
3750 5058 7.201487 GGGACAACAAACAAACAGTAATGAAAC 60.201 37.037 0.00 0.00 0.00 2.78
3751 5059 7.329717 GGACAACAAACAAACAGTAATGAAACA 59.670 33.333 0.00 0.00 0.00 2.83
3752 5060 8.238481 ACAACAAACAAACAGTAATGAAACAG 57.762 30.769 0.00 0.00 0.00 3.16
3753 5061 8.085296 ACAACAAACAAACAGTAATGAAACAGA 58.915 29.630 0.00 0.00 0.00 3.41
3754 5062 8.920665 CAACAAACAAACAGTAATGAAACAGAA 58.079 29.630 0.00 0.00 0.00 3.02
3755 5063 8.687824 ACAAACAAACAGTAATGAAACAGAAG 57.312 30.769 0.00 0.00 0.00 2.85
3756 5064 8.303876 ACAAACAAACAGTAATGAAACAGAAGT 58.696 29.630 0.00 0.00 0.00 3.01
3757 5065 8.798153 CAAACAAACAGTAATGAAACAGAAGTC 58.202 33.333 0.00 0.00 0.00 3.01
3758 5066 7.624360 ACAAACAGTAATGAAACAGAAGTCA 57.376 32.000 0.00 0.00 0.00 3.41
3759 5067 8.225603 ACAAACAGTAATGAAACAGAAGTCAT 57.774 30.769 0.00 0.00 36.00 3.06
3760 5068 9.337396 ACAAACAGTAATGAAACAGAAGTCATA 57.663 29.630 0.00 0.00 33.31 2.15
3764 5072 8.784043 ACAGTAATGAAACAGAAGTCATAAACC 58.216 33.333 0.00 0.00 33.31 3.27
3765 5073 8.783093 CAGTAATGAAACAGAAGTCATAAACCA 58.217 33.333 0.00 0.00 33.31 3.67
3766 5074 8.784043 AGTAATGAAACAGAAGTCATAAACCAC 58.216 33.333 0.00 0.00 33.31 4.16
3767 5075 7.823745 AATGAAACAGAAGTCATAAACCACT 57.176 32.000 0.00 0.00 33.31 4.00
3768 5076 7.823745 ATGAAACAGAAGTCATAAACCACTT 57.176 32.000 0.00 0.00 35.48 3.16
3769 5077 7.026631 TGAAACAGAAGTCATAAACCACTTG 57.973 36.000 0.00 0.00 32.83 3.16
3770 5078 6.039270 TGAAACAGAAGTCATAAACCACTTGG 59.961 38.462 0.00 0.00 42.17 3.61
3771 5079 5.304686 ACAGAAGTCATAAACCACTTGGA 57.695 39.130 1.14 0.00 38.94 3.53
3772 5080 5.690865 ACAGAAGTCATAAACCACTTGGAA 58.309 37.500 1.14 0.00 38.94 3.53
3773 5081 5.531287 ACAGAAGTCATAAACCACTTGGAAC 59.469 40.000 1.14 0.00 38.94 3.62
3774 5082 4.755123 AGAAGTCATAAACCACTTGGAACG 59.245 41.667 1.14 0.00 38.94 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.325993 TCCCTAGATCATCAATTTGACCAA 57.674 37.500 0.15 0.00 0.00 3.67
1 2 5.974156 TCCCTAGATCATCAATTTGACCA 57.026 39.130 0.15 0.00 0.00 4.02
2 3 6.591834 CGTATCCCTAGATCATCAATTTGACC 59.408 42.308 0.15 0.00 33.67 4.02
3 4 6.091441 GCGTATCCCTAGATCATCAATTTGAC 59.909 42.308 0.15 0.00 33.67 3.18
4 5 6.166279 GCGTATCCCTAGATCATCAATTTGA 58.834 40.000 0.75 0.75 33.67 2.69
5 6 5.062683 CGCGTATCCCTAGATCATCAATTTG 59.937 44.000 0.00 0.00 33.67 2.32
6 7 5.171476 CGCGTATCCCTAGATCATCAATTT 58.829 41.667 0.00 0.00 33.67 1.82
7 8 4.748892 CGCGTATCCCTAGATCATCAATT 58.251 43.478 0.00 0.00 33.67 2.32
8 9 3.429547 GCGCGTATCCCTAGATCATCAAT 60.430 47.826 8.43 0.00 33.67 2.57
9 10 2.094700 GCGCGTATCCCTAGATCATCAA 60.095 50.000 8.43 0.00 33.67 2.57
10 11 1.472878 GCGCGTATCCCTAGATCATCA 59.527 52.381 8.43 0.00 33.67 3.07
11 12 1.472878 TGCGCGTATCCCTAGATCATC 59.527 52.381 8.43 0.00 33.67 2.92
12 13 1.202582 GTGCGCGTATCCCTAGATCAT 59.797 52.381 8.43 0.00 33.67 2.45
13 14 0.596577 GTGCGCGTATCCCTAGATCA 59.403 55.000 8.43 0.00 33.67 2.92
14 15 0.454620 CGTGCGCGTATCCCTAGATC 60.455 60.000 12.43 0.00 33.67 2.75
15 16 1.579932 CGTGCGCGTATCCCTAGAT 59.420 57.895 12.43 0.00 36.44 1.98
16 17 3.028130 CGTGCGCGTATCCCTAGA 58.972 61.111 12.43 0.00 0.00 2.43
17 18 2.729862 GCGTGCGCGTATCCCTAG 60.730 66.667 22.18 0.00 40.81 3.02
18 19 4.274700 GGCGTGCGCGTATCCCTA 62.275 66.667 22.18 0.00 43.06 3.53
22 23 3.761445 TACAGGGCGTGCGCGTATC 62.761 63.158 22.18 11.01 43.06 2.24
23 24 2.839043 TTTACAGGGCGTGCGCGTAT 62.839 55.000 22.18 4.49 43.06 3.06
24 25 3.570621 TTTACAGGGCGTGCGCGTA 62.571 57.895 22.18 0.00 43.06 4.42
25 26 4.973055 TTTACAGGGCGTGCGCGT 62.973 61.111 22.18 2.94 43.06 6.01
26 27 4.439472 GTTTACAGGGCGTGCGCG 62.439 66.667 16.86 16.86 43.06 6.86
27 28 3.047877 AGTTTACAGGGCGTGCGC 61.048 61.111 7.17 8.17 41.06 6.09
28 29 1.959226 ACAGTTTACAGGGCGTGCG 60.959 57.895 7.17 0.00 0.00 5.34
29 30 0.882927 TCACAGTTTACAGGGCGTGC 60.883 55.000 7.17 0.00 0.00 5.34
30 31 1.148310 CTCACAGTTTACAGGGCGTG 58.852 55.000 5.50 5.50 0.00 5.34
31 32 1.000955 CTCTCACAGTTTACAGGGCGT 59.999 52.381 0.00 0.00 0.00 5.68
32 33 1.272490 TCTCTCACAGTTTACAGGGCG 59.728 52.381 0.00 0.00 0.00 6.13
33 34 2.354203 CCTCTCTCACAGTTTACAGGGC 60.354 54.545 0.00 0.00 0.00 5.19
34 35 2.900546 ACCTCTCTCACAGTTTACAGGG 59.099 50.000 0.00 0.00 0.00 4.45
35 36 3.322254 ACACCTCTCTCACAGTTTACAGG 59.678 47.826 0.00 0.00 0.00 4.00
36 37 4.592485 ACACCTCTCTCACAGTTTACAG 57.408 45.455 0.00 0.00 0.00 2.74
37 38 5.138276 ACTACACCTCTCTCACAGTTTACA 58.862 41.667 0.00 0.00 0.00 2.41
38 39 5.708877 ACTACACCTCTCTCACAGTTTAC 57.291 43.478 0.00 0.00 0.00 2.01
39 40 6.946583 ACATACTACACCTCTCTCACAGTTTA 59.053 38.462 0.00 0.00 0.00 2.01
40 41 5.775701 ACATACTACACCTCTCTCACAGTTT 59.224 40.000 0.00 0.00 0.00 2.66
41 42 5.326069 ACATACTACACCTCTCTCACAGTT 58.674 41.667 0.00 0.00 0.00 3.16
42 43 4.924625 ACATACTACACCTCTCTCACAGT 58.075 43.478 0.00 0.00 0.00 3.55
43 44 5.906113 AACATACTACACCTCTCTCACAG 57.094 43.478 0.00 0.00 0.00 3.66
44 45 5.047306 CCAAACATACTACACCTCTCTCACA 60.047 44.000 0.00 0.00 0.00 3.58
45 46 5.185249 TCCAAACATACTACACCTCTCTCAC 59.815 44.000 0.00 0.00 0.00 3.51
46 47 5.330233 TCCAAACATACTACACCTCTCTCA 58.670 41.667 0.00 0.00 0.00 3.27
47 48 5.163499 CCTCCAAACATACTACACCTCTCTC 60.163 48.000 0.00 0.00 0.00 3.20
48 49 4.712337 CCTCCAAACATACTACACCTCTCT 59.288 45.833 0.00 0.00 0.00 3.10
49 50 4.710375 TCCTCCAAACATACTACACCTCTC 59.290 45.833 0.00 0.00 0.00 3.20
50 51 4.684724 TCCTCCAAACATACTACACCTCT 58.315 43.478 0.00 0.00 0.00 3.69
51 52 5.360591 CATCCTCCAAACATACTACACCTC 58.639 45.833 0.00 0.00 0.00 3.85
52 53 4.384208 GCATCCTCCAAACATACTACACCT 60.384 45.833 0.00 0.00 0.00 4.00
53 54 3.877508 GCATCCTCCAAACATACTACACC 59.122 47.826 0.00 0.00 0.00 4.16
54 55 3.877508 GGCATCCTCCAAACATACTACAC 59.122 47.826 0.00 0.00 0.00 2.90
55 56 3.780294 AGGCATCCTCCAAACATACTACA 59.220 43.478 0.00 0.00 0.00 2.74
56 57 4.423625 AGGCATCCTCCAAACATACTAC 57.576 45.455 0.00 0.00 0.00 2.73
57 58 5.450818 AAAGGCATCCTCCAAACATACTA 57.549 39.130 0.00 0.00 30.89 1.82
58 59 4.322057 AAAGGCATCCTCCAAACATACT 57.678 40.909 0.00 0.00 30.89 2.12
80 81 3.118371 GGTCAGATCCTCGGGTTAACATT 60.118 47.826 8.10 0.00 0.00 2.71
109 110 0.657840 GCCATAATGGTGTGCTCGAC 59.342 55.000 0.00 0.00 40.46 4.20
118 119 2.158430 TCCTCATGCATGCCATAATGGT 60.158 45.455 22.25 0.00 40.46 3.55
123 124 2.640826 TCTGATCCTCATGCATGCCATA 59.359 45.455 22.25 7.50 31.47 2.74
127 128 2.257691 ACTCTGATCCTCATGCATGC 57.742 50.000 22.25 11.82 0.00 4.06
143 144 4.643784 TCTCGTATTGGAAGGGAGTAACTC 59.356 45.833 0.00 0.00 0.00 3.01
153 154 3.325870 TGCAACACTCTCGTATTGGAAG 58.674 45.455 0.00 0.00 28.38 3.46
165 166 2.030540 ACAGATTGTGCATGCAACACTC 60.031 45.455 24.58 22.68 38.86 3.51
176 177 1.197492 TCGTGCATGAACAGATTGTGC 59.803 47.619 6.04 0.00 36.39 4.57
177 178 3.486375 GGATCGTGCATGAACAGATTGTG 60.486 47.826 13.65 0.00 0.00 3.33
181 182 1.134699 ACGGATCGTGCATGAACAGAT 60.135 47.619 20.10 7.68 39.18 2.90
199 200 2.285256 GCTTCTAATCATGTCGTGCACG 60.285 50.000 32.76 32.76 41.45 5.34
205 206 2.282555 CGTGTGGCTTCTAATCATGTCG 59.717 50.000 0.00 0.00 0.00 4.35
208 209 2.905075 TCCGTGTGGCTTCTAATCATG 58.095 47.619 0.00 0.00 34.14 3.07
226 227 5.474825 TGGATTGCCTCGTTTTTAAAATCC 58.525 37.500 0.55 3.28 41.19 3.01
227 228 7.170828 ACTTTGGATTGCCTCGTTTTTAAAATC 59.829 33.333 0.55 0.10 34.31 2.17
232 233 4.580995 TCACTTTGGATTGCCTCGTTTTTA 59.419 37.500 0.00 0.00 34.31 1.52
285 477 2.307098 ACCTTATTGGAAGAGCACTGCT 59.693 45.455 2.22 2.22 39.78 4.24
291 483 2.436417 TGCACACCTTATTGGAAGAGC 58.564 47.619 0.00 0.00 39.71 4.09
306 498 9.973450 AAAGTTAAACATTAACATACATGCACA 57.027 25.926 13.65 0.00 0.00 4.57
392 584 5.511088 TCGAACTCGTATTTGAAGAAAGC 57.489 39.130 0.00 0.00 40.80 3.51
393 585 6.090898 ACCATCGAACTCGTATTTGAAGAAAG 59.909 38.462 0.00 0.00 40.80 2.62
394 586 5.929992 ACCATCGAACTCGTATTTGAAGAAA 59.070 36.000 0.00 0.00 40.80 2.52
406 598 4.625742 ACAAAAGTCATACCATCGAACTCG 59.374 41.667 0.00 0.00 41.45 4.18
409 601 5.637810 TGAGACAAAAGTCATACCATCGAAC 59.362 40.000 0.00 0.00 0.00 3.95
413 605 6.992063 ATGTGAGACAAAAGTCATACCATC 57.008 37.500 0.00 0.00 0.00 3.51
417 609 6.653320 TGGGTTATGTGAGACAAAAGTCATAC 59.347 38.462 0.00 0.00 0.00 2.39
421 613 4.084013 CGTGGGTTATGTGAGACAAAAGTC 60.084 45.833 0.00 0.00 0.00 3.01
460 652 1.600013 TGAAATCGTGTTTGACCACCG 59.400 47.619 0.00 0.00 31.47 4.94
462 654 5.518487 ACAATTTGAAATCGTGTTTGACCAC 59.482 36.000 2.79 0.00 0.00 4.16
483 677 7.809546 TTTGGTGAATAAGACACACATACAA 57.190 32.000 0.00 0.00 39.65 2.41
510 711 5.359860 CCGGCTTAAATATCACTCCCTTTTT 59.640 40.000 0.00 0.00 0.00 1.94
511 712 4.887655 CCGGCTTAAATATCACTCCCTTTT 59.112 41.667 0.00 0.00 0.00 2.27
574 776 1.743623 TGCGTGCCGATTTACCTGG 60.744 57.895 0.00 0.00 0.00 4.45
578 780 0.787908 CGTTGTGCGTGCCGATTTAC 60.788 55.000 0.00 0.00 35.54 2.01
596 798 0.655733 AAACTTTGACACGCTCACCG 59.344 50.000 0.00 0.00 44.21 4.94
648 850 7.923878 GCCACTTTATAGGTTTTTCTTCAACAA 59.076 33.333 0.00 0.00 0.00 2.83
690 918 4.381932 GCCCATCAACTTTGGATTTGGTAG 60.382 45.833 0.00 0.00 36.26 3.18
691 919 3.513515 GCCCATCAACTTTGGATTTGGTA 59.486 43.478 0.00 0.00 36.26 3.25
692 920 2.302733 GCCCATCAACTTTGGATTTGGT 59.697 45.455 0.00 0.00 36.26 3.67
693 921 2.355007 GGCCCATCAACTTTGGATTTGG 60.355 50.000 0.00 0.00 36.26 3.28
773 1002 0.393808 ATGGACGGACGAATTTGGGG 60.394 55.000 0.00 0.00 0.00 4.96
881 1122 1.492993 GGGTGCTCTCCTTCCAAGGT 61.493 60.000 5.24 0.00 46.54 3.50
885 1126 3.706373 GCGGGTGCTCTCCTTCCA 61.706 66.667 0.00 0.00 38.39 3.53
955 1197 1.373570 GATTCGTCTTGGCAGGAAGG 58.626 55.000 12.17 2.97 0.00 3.46
1161 1407 2.603473 AGCGTGTAGGACAGCCCA 60.603 61.111 0.00 0.00 37.41 5.36
1164 1410 1.726853 AATTCAGCGTGTAGGACAGC 58.273 50.000 0.00 0.00 0.00 4.40
1185 1431 1.067416 CGAAGCTAGCATACCGGCA 59.933 57.895 18.83 0.00 35.83 5.69
1258 1504 3.619038 CGACAGCTTCATCCCTCTAAAAC 59.381 47.826 0.00 0.00 0.00 2.43
1277 1581 3.044059 GCAAGATGCAGGGCACGAC 62.044 63.158 0.00 0.00 43.04 4.34
1278 1582 2.747460 GCAAGATGCAGGGCACGA 60.747 61.111 0.00 0.00 43.04 4.35
1307 1611 3.028130 TGTAACATCGCAGGGTCATCTA 58.972 45.455 0.00 0.00 0.00 1.98
1312 1616 1.421410 CGCTGTAACATCGCAGGGTC 61.421 60.000 0.00 0.00 39.72 4.46
1345 1649 4.019174 CAGGCCAGTTGATTTCATTAGGT 58.981 43.478 5.01 0.00 0.00 3.08
1353 1657 9.822185 GAATTAAATTATCAGGCCAGTTGATTT 57.178 29.630 10.93 11.46 36.68 2.17
1354 1658 9.205513 AGAATTAAATTATCAGGCCAGTTGATT 57.794 29.630 10.93 1.28 36.68 2.57
1357 1661 7.134815 CGAGAATTAAATTATCAGGCCAGTTG 58.865 38.462 5.01 0.00 31.12 3.16
1434 1747 7.510549 ACATGCAATATATACCAGTTGAACC 57.489 36.000 0.00 0.00 0.00 3.62
1441 1754 7.970061 GGCAATACAACATGCAATATATACCAG 59.030 37.037 0.00 0.00 44.32 4.00
1442 1755 7.093988 GGGCAATACAACATGCAATATATACCA 60.094 37.037 0.00 0.00 44.32 3.25
1443 1756 7.257722 GGGCAATACAACATGCAATATATACC 58.742 38.462 0.00 0.00 44.32 2.73
1444 1757 6.966632 CGGGCAATACAACATGCAATATATAC 59.033 38.462 0.00 0.00 44.32 1.47
1445 1758 6.094742 CCGGGCAATACAACATGCAATATATA 59.905 38.462 0.00 0.00 44.32 0.86
1446 1759 5.105797 CCGGGCAATACAACATGCAATATAT 60.106 40.000 0.00 0.00 44.32 0.86
1447 1760 4.217334 CCGGGCAATACAACATGCAATATA 59.783 41.667 0.00 0.00 44.32 0.86
1448 1761 3.005684 CCGGGCAATACAACATGCAATAT 59.994 43.478 0.00 0.00 44.32 1.28
1449 1762 2.360483 CCGGGCAATACAACATGCAATA 59.640 45.455 0.00 0.00 44.32 1.90
1459 1772 1.074072 AGCAACACCGGGCAATACA 59.926 52.632 6.32 0.00 0.00 2.29
1460 1773 1.241315 ACAGCAACACCGGGCAATAC 61.241 55.000 6.32 0.00 0.00 1.89
1485 1952 6.854496 ACTAATTAACTTGAAACTCACGCA 57.146 33.333 0.00 0.00 0.00 5.24
1737 2206 2.404559 TGGTATACCAGGGACATGGAC 58.595 52.381 21.05 0.00 43.57 4.02
1834 2303 2.035066 GCAGGGCCAAGCAATATAACAG 59.965 50.000 15.07 0.00 0.00 3.16
1887 2617 9.920133 TTTAAGCAAACAAAATATACAGCATGA 57.080 25.926 0.00 0.00 39.69 3.07
1910 2640 7.413657 GCCTCGCTCTAACATAACAAACATTTA 60.414 37.037 0.00 0.00 0.00 1.40
1951 2683 3.551890 ACATATCGCACGAATGTTCAGAC 59.448 43.478 12.09 0.00 29.68 3.51
1965 2698 1.143305 CAGCACAGCCTACATATCGC 58.857 55.000 0.00 0.00 0.00 4.58
1966 2699 2.515926 ACAGCACAGCCTACATATCG 57.484 50.000 0.00 0.00 0.00 2.92
1978 2711 4.256110 CATGATAGGAGTTGAACAGCACA 58.744 43.478 0.00 0.00 0.00 4.57
2099 2832 7.713507 TGACCAAGGCTGTATAATTGTACATAC 59.286 37.037 14.52 10.70 34.33 2.39
2202 3439 6.493189 TTCTTGGTTTGGGAAATTAAGCTT 57.507 33.333 3.48 3.48 0.00 3.74
2258 3495 6.831868 AGAAATAGCACCCCGTTAATTTGTAT 59.168 34.615 0.00 0.00 0.00 2.29
2269 3506 0.251916 TGGACAGAAATAGCACCCCG 59.748 55.000 0.00 0.00 0.00 5.73
2275 3512 8.613060 TTGATCTATCAATGGACAGAAATAGC 57.387 34.615 1.23 0.00 41.51 2.97
2326 3563 9.528018 TTGTTAAATTAGGCTCAAAAGTTCTTG 57.472 29.630 0.00 0.00 0.00 3.02
2338 3575 9.528489 TCTATTCTTGGTTTGTTAAATTAGGCT 57.472 29.630 0.00 0.00 0.00 4.58
2354 3591 6.914259 TGCTACAGTCGATATCTATTCTTGG 58.086 40.000 0.34 0.00 0.00 3.61
2413 3650 5.331830 GCAGAAAACAGACGAAAGAAAATGC 60.332 40.000 0.00 0.00 0.00 3.56
2447 3684 6.484643 TCTGAACAAGGAGAGATTCAACTTTG 59.515 38.462 0.00 0.00 31.00 2.77
2578 3815 3.052566 AGAGACCATACCTGAGTGGATCA 60.053 47.826 0.00 0.00 38.86 2.92
2587 3824 6.878317 TCACAGAAATTAGAGACCATACCTG 58.122 40.000 0.00 0.00 0.00 4.00
2592 3829 7.453393 TGTTCTTCACAGAAATTAGAGACCAT 58.547 34.615 0.00 0.00 40.90 3.55
2593 3830 6.826668 TGTTCTTCACAGAAATTAGAGACCA 58.173 36.000 0.00 0.00 40.90 4.02
2602 3840 5.779529 ACAAGCATGTTCTTCACAGAAAT 57.220 34.783 0.00 0.00 40.90 2.17
2626 3864 2.025887 AGGTAAGCCAATGGAGGTTGAG 60.026 50.000 2.05 0.00 37.19 3.02
2629 3867 2.279173 AGAGGTAAGCCAATGGAGGTT 58.721 47.619 2.05 0.00 37.19 3.50
2664 3902 3.289834 CCTGCAACGCAAGCCACT 61.290 61.111 0.00 0.00 38.41 4.00
2673 3911 1.003545 CACAAACTCTGACCTGCAACG 60.004 52.381 0.00 0.00 0.00 4.10
2984 4222 6.633500 TGTTCCCAAACAAGAATTAGTGAG 57.367 37.500 0.00 0.00 42.34 3.51
3023 4261 9.860898 AGAATGCTTTCTATGTTTATTTTGACC 57.139 29.630 12.85 0.00 40.47 4.02
3060 4309 1.104577 GGGAAAAACACCAGACGGCA 61.105 55.000 0.00 0.00 34.57 5.69
3116 4366 7.489435 GCAAGAGCTCCAGATTTATTTTTAACC 59.511 37.037 10.93 0.00 37.91 2.85
3152 4411 4.654262 TGGACCAGAGGGAGTACATAAATC 59.346 45.833 0.00 0.00 38.05 2.17
3245 4504 1.339055 CCAGGTCTGCCAAGAATTCGA 60.339 52.381 0.00 0.00 37.19 3.71
3266 4525 0.598065 GCTGCTGTTCAATTCCGGTT 59.402 50.000 0.00 0.00 0.00 4.44
3276 4535 1.584380 CCTGGCTTCTGCTGCTGTTC 61.584 60.000 0.00 0.00 39.59 3.18
3308 4567 7.089538 ACAGTAATATCAGATGCGATCTTCAG 58.910 38.462 0.00 0.00 37.58 3.02
3342 4601 4.036027 ACTTCCAATGCAATCGATCACATC 59.964 41.667 12.10 0.00 0.00 3.06
3350 4609 4.383649 CAGTTCAAACTTCCAATGCAATCG 59.616 41.667 0.00 0.00 37.08 3.34
3373 4632 8.133627 AGTCTATGAAAACATGCAATATTCTGC 58.866 33.333 0.00 0.00 42.95 4.26
3383 4642 8.034058 ACAGAAACTAGTCTATGAAAACATGC 57.966 34.615 0.00 0.00 0.00 4.06
3387 4653 7.803659 GGCAAACAGAAACTAGTCTATGAAAAC 59.196 37.037 0.00 0.00 0.00 2.43
3388 4654 7.500892 TGGCAAACAGAAACTAGTCTATGAAAA 59.499 33.333 0.00 0.00 0.00 2.29
3395 4661 5.701290 GTGTATGGCAAACAGAAACTAGTCT 59.299 40.000 0.00 0.00 0.00 3.24
3398 4664 6.204688 TCAAGTGTATGGCAAACAGAAACTAG 59.795 38.462 0.00 0.00 37.89 2.57
3401 4667 4.976116 GTCAAGTGTATGGCAAACAGAAAC 59.024 41.667 0.00 0.00 0.00 2.78
3405 4671 2.805671 TCGTCAAGTGTATGGCAAACAG 59.194 45.455 0.00 0.00 0.00 3.16
3406 4672 2.546368 GTCGTCAAGTGTATGGCAAACA 59.454 45.455 0.00 0.00 0.00 2.83
3459 4725 1.305930 GGTTGATCGGTGGCAGGAAC 61.306 60.000 0.00 0.00 0.00 3.62
3460 4726 1.002624 GGTTGATCGGTGGCAGGAA 60.003 57.895 0.00 0.00 0.00 3.36
3462 4728 1.746615 CTGGTTGATCGGTGGCAGG 60.747 63.158 0.00 0.00 0.00 4.85
3463 4729 2.401766 GCTGGTTGATCGGTGGCAG 61.402 63.158 0.00 0.00 0.00 4.85
3464 4730 1.549243 TAGCTGGTTGATCGGTGGCA 61.549 55.000 0.00 0.00 0.00 4.92
3465 4731 1.090052 GTAGCTGGTTGATCGGTGGC 61.090 60.000 0.00 0.00 0.00 5.01
3466 4732 0.806102 CGTAGCTGGTTGATCGGTGG 60.806 60.000 0.00 0.00 0.00 4.61
3467 4733 0.108804 ACGTAGCTGGTTGATCGGTG 60.109 55.000 0.00 0.00 0.00 4.94
3468 4734 0.606604 AACGTAGCTGGTTGATCGGT 59.393 50.000 0.00 0.00 0.00 4.69
3470 4736 1.393539 CCAAACGTAGCTGGTTGATCG 59.606 52.381 3.47 0.00 0.00 3.69
3471 4737 1.130561 GCCAAACGTAGCTGGTTGATC 59.869 52.381 3.47 0.00 36.32 2.92
3472 4738 1.165270 GCCAAACGTAGCTGGTTGAT 58.835 50.000 3.47 0.00 36.32 2.57
3473 4739 0.107831 AGCCAAACGTAGCTGGTTGA 59.892 50.000 3.47 0.00 38.11 3.18
3474 4740 2.629002 AGCCAAACGTAGCTGGTTG 58.371 52.632 6.84 0.00 38.11 3.77
3479 4745 2.742372 CGGCAGCCAAACGTAGCT 60.742 61.111 13.30 2.08 40.89 3.32
3480 4746 3.023591 GACGGCAGCCAAACGTAGC 62.024 63.158 13.30 0.00 41.40 3.58
3481 4747 2.388232 GGACGGCAGCCAAACGTAG 61.388 63.158 13.30 0.00 41.40 3.51
3482 4748 2.357760 GGACGGCAGCCAAACGTA 60.358 61.111 13.30 0.00 41.40 3.57
3483 4749 4.250305 AGGACGGCAGCCAAACGT 62.250 61.111 13.30 2.70 44.35 3.99
3484 4750 3.726517 CAGGACGGCAGCCAAACG 61.727 66.667 13.30 0.00 0.00 3.60
3485 4751 4.043200 GCAGGACGGCAGCCAAAC 62.043 66.667 13.30 0.00 0.00 2.93
3486 4752 2.803155 CTAGCAGGACGGCAGCCAAA 62.803 60.000 13.30 0.00 35.83 3.28
3487 4753 3.315142 CTAGCAGGACGGCAGCCAA 62.315 63.158 13.30 0.00 35.83 4.52
3488 4754 3.774528 CTAGCAGGACGGCAGCCA 61.775 66.667 13.30 0.00 35.83 4.75
3489 4755 1.956629 TTACTAGCAGGACGGCAGCC 61.957 60.000 0.00 0.00 35.83 4.85
3490 4756 0.528684 CTTACTAGCAGGACGGCAGC 60.529 60.000 0.00 0.00 35.83 5.25
3491 4757 1.103803 TCTTACTAGCAGGACGGCAG 58.896 55.000 0.00 0.00 35.83 4.85
3492 4758 1.409064 CATCTTACTAGCAGGACGGCA 59.591 52.381 0.00 0.00 35.83 5.69
3493 4759 1.409427 ACATCTTACTAGCAGGACGGC 59.591 52.381 0.00 0.00 0.00 5.68
3495 4761 5.274718 CAGTAACATCTTACTAGCAGGACG 58.725 45.833 0.00 0.00 40.64 4.79
3497 4763 4.956700 AGCAGTAACATCTTACTAGCAGGA 59.043 41.667 13.46 0.00 40.64 3.86
3498 4764 5.269505 AGCAGTAACATCTTACTAGCAGG 57.730 43.478 13.46 0.00 40.64 4.85
3499 4765 6.183360 TGGTAGCAGTAACATCTTACTAGCAG 60.183 42.308 13.46 0.00 40.64 4.24
3501 4767 5.978322 GTGGTAGCAGTAACATCTTACTAGC 59.022 44.000 0.00 1.34 40.64 3.42
3502 4768 6.037940 TCGTGGTAGCAGTAACATCTTACTAG 59.962 42.308 0.00 0.00 40.64 2.57
3503 4769 5.882000 TCGTGGTAGCAGTAACATCTTACTA 59.118 40.000 0.00 0.00 40.64 1.82
3504 4770 4.703575 TCGTGGTAGCAGTAACATCTTACT 59.296 41.667 0.00 0.00 42.95 2.24
3505 4771 4.797349 GTCGTGGTAGCAGTAACATCTTAC 59.203 45.833 0.00 0.00 33.55 2.34
3506 4772 4.437794 CGTCGTGGTAGCAGTAACATCTTA 60.438 45.833 0.00 0.00 0.00 2.10
3507 4773 3.672511 CGTCGTGGTAGCAGTAACATCTT 60.673 47.826 0.00 0.00 0.00 2.40
3508 4774 2.159421 CGTCGTGGTAGCAGTAACATCT 60.159 50.000 0.00 0.00 0.00 2.90
3509 4775 2.182825 CGTCGTGGTAGCAGTAACATC 58.817 52.381 0.00 0.00 0.00 3.06
3510 4776 1.135199 CCGTCGTGGTAGCAGTAACAT 60.135 52.381 0.00 0.00 0.00 2.71
3523 4789 4.657824 AACCGCCTCACCGTCGTG 62.658 66.667 0.00 0.00 41.72 4.35
3525 4791 4.657824 ACAACCGCCTCACCGTCG 62.658 66.667 0.00 0.00 0.00 5.12
3526 4792 3.041940 CACAACCGCCTCACCGTC 61.042 66.667 0.00 0.00 0.00 4.79
3535 4801 4.166011 GATCAGCCGCACAACCGC 62.166 66.667 0.00 0.00 0.00 5.68
3537 4803 1.503542 CAAGATCAGCCGCACAACC 59.496 57.895 0.00 0.00 0.00 3.77
3539 4805 0.674581 CTCCAAGATCAGCCGCACAA 60.675 55.000 0.00 0.00 0.00 3.33
3541 4807 0.809241 CTCTCCAAGATCAGCCGCAC 60.809 60.000 0.00 0.00 0.00 5.34
3542 4808 1.519246 CTCTCCAAGATCAGCCGCA 59.481 57.895 0.00 0.00 0.00 5.69
3543 4809 1.886777 GCTCTCCAAGATCAGCCGC 60.887 63.158 0.00 0.00 0.00 6.53
3544 4810 0.106335 ATGCTCTCCAAGATCAGCCG 59.894 55.000 0.00 0.00 0.00 5.52
3546 4812 3.391965 CTGTATGCTCTCCAAGATCAGC 58.608 50.000 0.00 0.00 0.00 4.26
3548 4814 2.223900 CGCTGTATGCTCTCCAAGATCA 60.224 50.000 0.00 0.00 40.11 2.92
3549 4815 2.223923 ACGCTGTATGCTCTCCAAGATC 60.224 50.000 0.00 0.00 40.11 2.75
3550 4816 1.759445 ACGCTGTATGCTCTCCAAGAT 59.241 47.619 0.00 0.00 40.11 2.40
3554 4820 1.676529 GAGTACGCTGTATGCTCTCCA 59.323 52.381 0.00 0.00 40.11 3.86
3555 4821 1.950909 AGAGTACGCTGTATGCTCTCC 59.049 52.381 0.00 0.00 34.43 3.71
3556 4822 3.262135 GAGAGTACGCTGTATGCTCTC 57.738 52.381 2.99 14.42 44.95 3.20
3557 4823 2.616376 CAGAGAGTACGCTGTATGCTCT 59.384 50.000 2.99 12.68 41.26 4.09
3558 4824 2.614520 TCAGAGAGTACGCTGTATGCTC 59.385 50.000 2.99 0.00 42.84 4.26
3570 4878 5.330233 TGGACACTGGTAATTCAGAGAGTA 58.670 41.667 1.40 0.00 38.11 2.59
3607 4915 3.730761 CGTTGCAGTCCAGCAGGC 61.731 66.667 0.00 0.00 46.54 4.85
3608 4916 3.052082 CCGTTGCAGTCCAGCAGG 61.052 66.667 0.00 0.00 46.54 4.85
3609 4917 3.052082 CCCGTTGCAGTCCAGCAG 61.052 66.667 0.00 0.00 46.54 4.24
3610 4918 3.113514 TTCCCGTTGCAGTCCAGCA 62.114 57.895 0.00 0.00 43.99 4.41
3611 4919 2.281484 TTCCCGTTGCAGTCCAGC 60.281 61.111 0.00 0.00 0.00 4.85
3612 4920 1.071471 AGTTCCCGTTGCAGTCCAG 59.929 57.895 0.00 0.00 0.00 3.86
3613 4921 1.227823 CAGTTCCCGTTGCAGTCCA 60.228 57.895 0.00 0.00 0.00 4.02
3614 4922 0.534203 TTCAGTTCCCGTTGCAGTCC 60.534 55.000 0.00 0.00 0.00 3.85
3615 4923 1.305201 TTTCAGTTCCCGTTGCAGTC 58.695 50.000 0.00 0.00 0.00 3.51
3616 4924 1.981256 ATTTCAGTTCCCGTTGCAGT 58.019 45.000 0.00 0.00 0.00 4.40
3617 4925 2.664916 CAATTTCAGTTCCCGTTGCAG 58.335 47.619 0.00 0.00 0.00 4.41
3618 4926 1.269517 GCAATTTCAGTTCCCGTTGCA 60.270 47.619 0.00 0.00 41.01 4.08
3619 4927 1.269517 TGCAATTTCAGTTCCCGTTGC 60.270 47.619 0.00 0.00 41.53 4.17
3620 4928 2.791383 TGCAATTTCAGTTCCCGTTG 57.209 45.000 0.00 0.00 0.00 4.10
3621 4929 2.890311 TCATGCAATTTCAGTTCCCGTT 59.110 40.909 0.00 0.00 0.00 4.44
3622 4930 2.513753 TCATGCAATTTCAGTTCCCGT 58.486 42.857 0.00 0.00 0.00 5.28
3623 4931 3.574284 TTCATGCAATTTCAGTTCCCG 57.426 42.857 0.00 0.00 0.00 5.14
3624 4932 6.038356 CAGTATTCATGCAATTTCAGTTCCC 58.962 40.000 0.00 0.00 0.00 3.97
3625 4933 6.624423 ACAGTATTCATGCAATTTCAGTTCC 58.376 36.000 0.00 0.00 0.00 3.62
3626 4934 6.467047 CGACAGTATTCATGCAATTTCAGTTC 59.533 38.462 0.00 0.00 0.00 3.01
3627 4935 6.317088 CGACAGTATTCATGCAATTTCAGTT 58.683 36.000 0.00 0.00 0.00 3.16
3628 4936 5.674569 GCGACAGTATTCATGCAATTTCAGT 60.675 40.000 0.00 0.00 0.00 3.41
3629 4937 4.731961 GCGACAGTATTCATGCAATTTCAG 59.268 41.667 0.00 0.00 0.00 3.02
3630 4938 4.155644 TGCGACAGTATTCATGCAATTTCA 59.844 37.500 0.00 0.00 0.00 2.69
3631 4939 4.661125 TGCGACAGTATTCATGCAATTTC 58.339 39.130 0.00 0.00 0.00 2.17
3632 4940 4.700268 TGCGACAGTATTCATGCAATTT 57.300 36.364 0.00 0.00 0.00 1.82
3633 4941 4.906065 ATGCGACAGTATTCATGCAATT 57.094 36.364 0.00 0.00 35.78 2.32
3634 4942 4.906065 AATGCGACAGTATTCATGCAAT 57.094 36.364 0.00 0.00 35.78 3.56
3635 4943 4.661125 GAAATGCGACAGTATTCATGCAA 58.339 39.130 0.00 0.00 35.78 4.08
3636 4944 3.242381 CGAAATGCGACAGTATTCATGCA 60.242 43.478 0.00 0.00 44.57 3.96
3637 4945 3.001228 TCGAAATGCGACAGTATTCATGC 59.999 43.478 0.00 0.00 45.59 4.06
3638 4946 4.268644 ACTCGAAATGCGACAGTATTCATG 59.731 41.667 0.00 0.00 45.59 3.07
3639 4947 4.433615 ACTCGAAATGCGACAGTATTCAT 58.566 39.130 0.00 0.00 45.59 2.57
3640 4948 3.845178 ACTCGAAATGCGACAGTATTCA 58.155 40.909 0.00 0.00 45.59 2.57
3641 4949 4.206609 GGTACTCGAAATGCGACAGTATTC 59.793 45.833 0.00 0.00 45.59 1.75
3642 4950 4.110482 GGTACTCGAAATGCGACAGTATT 58.890 43.478 0.00 0.00 45.59 1.89
3643 4951 3.129813 TGGTACTCGAAATGCGACAGTAT 59.870 43.478 0.00 0.00 45.59 2.12
3644 4952 2.488937 TGGTACTCGAAATGCGACAGTA 59.511 45.455 0.00 0.00 45.59 2.74
3645 4953 1.271379 TGGTACTCGAAATGCGACAGT 59.729 47.619 0.00 0.00 45.59 3.55
3646 4954 1.990799 TGGTACTCGAAATGCGACAG 58.009 50.000 0.00 0.00 45.59 3.51
3647 4955 2.442212 TTGGTACTCGAAATGCGACA 57.558 45.000 0.00 0.00 45.59 4.35
3648 4956 3.799137 TTTTGGTACTCGAAATGCGAC 57.201 42.857 0.00 0.00 45.59 5.19
3650 4958 3.851403 CCATTTTTGGTACTCGAAATGCG 59.149 43.478 16.13 9.98 37.87 4.73
3651 4959 5.054390 TCCATTTTTGGTACTCGAAATGC 57.946 39.130 16.13 0.00 37.87 3.56
3652 4960 6.527722 CACATCCATTTTTGGTACTCGAAATG 59.472 38.462 15.28 15.28 38.54 2.32
3653 4961 6.620678 CACATCCATTTTTGGTACTCGAAAT 58.379 36.000 0.00 0.00 0.00 2.17
3654 4962 5.563867 GCACATCCATTTTTGGTACTCGAAA 60.564 40.000 0.00 0.00 0.00 3.46
3655 4963 4.083003 GCACATCCATTTTTGGTACTCGAA 60.083 41.667 0.00 0.00 0.00 3.71
3656 4964 3.438781 GCACATCCATTTTTGGTACTCGA 59.561 43.478 0.00 0.00 0.00 4.04
3657 4965 3.190327 TGCACATCCATTTTTGGTACTCG 59.810 43.478 0.00 0.00 0.00 4.18
3658 4966 4.218417 ACTGCACATCCATTTTTGGTACTC 59.782 41.667 0.00 0.00 0.00 2.59
3659 4967 4.022068 CACTGCACATCCATTTTTGGTACT 60.022 41.667 0.00 0.00 0.00 2.73
3660 4968 4.236935 CACTGCACATCCATTTTTGGTAC 58.763 43.478 0.00 0.00 0.00 3.34
3661 4969 3.305950 GCACTGCACATCCATTTTTGGTA 60.306 43.478 0.00 0.00 0.00 3.25
3662 4970 2.548493 GCACTGCACATCCATTTTTGGT 60.548 45.455 0.00 0.00 0.00 3.67
3663 4971 2.070783 GCACTGCACATCCATTTTTGG 58.929 47.619 0.00 0.00 0.00 3.28
3664 4972 1.722464 CGCACTGCACATCCATTTTTG 59.278 47.619 1.11 0.00 0.00 2.44
3665 4973 1.612950 TCGCACTGCACATCCATTTTT 59.387 42.857 1.11 0.00 0.00 1.94
3666 4974 1.246649 TCGCACTGCACATCCATTTT 58.753 45.000 1.11 0.00 0.00 1.82
3667 4975 1.466856 ATCGCACTGCACATCCATTT 58.533 45.000 1.11 0.00 0.00 2.32
3668 4976 1.466856 AATCGCACTGCACATCCATT 58.533 45.000 1.11 0.00 0.00 3.16
3669 4977 2.216046 CTAATCGCACTGCACATCCAT 58.784 47.619 1.11 0.00 0.00 3.41
3670 4978 1.655484 CTAATCGCACTGCACATCCA 58.345 50.000 1.11 0.00 0.00 3.41
3671 4979 0.940126 CCTAATCGCACTGCACATCC 59.060 55.000 1.11 0.00 0.00 3.51
3672 4980 1.939974 TCCTAATCGCACTGCACATC 58.060 50.000 1.11 0.00 0.00 3.06
3673 4981 2.401583 TTCCTAATCGCACTGCACAT 57.598 45.000 1.11 0.00 0.00 3.21
3674 4982 2.076100 CTTTCCTAATCGCACTGCACA 58.924 47.619 1.11 0.00 0.00 4.57
3675 4983 1.398390 CCTTTCCTAATCGCACTGCAC 59.602 52.381 1.11 0.00 0.00 4.57
3676 4984 1.277842 TCCTTTCCTAATCGCACTGCA 59.722 47.619 1.11 0.00 0.00 4.41
3677 4985 2.024176 TCCTTTCCTAATCGCACTGC 57.976 50.000 0.00 0.00 0.00 4.40
3678 4986 2.352960 GCTTCCTTTCCTAATCGCACTG 59.647 50.000 0.00 0.00 0.00 3.66
3679 4987 2.027192 TGCTTCCTTTCCTAATCGCACT 60.027 45.455 0.00 0.00 0.00 4.40
3680 4988 2.356135 TGCTTCCTTTCCTAATCGCAC 58.644 47.619 0.00 0.00 0.00 5.34
3681 4989 2.779755 TGCTTCCTTTCCTAATCGCA 57.220 45.000 0.00 0.00 0.00 5.10
3682 4990 4.997395 TGATATGCTTCCTTTCCTAATCGC 59.003 41.667 0.00 0.00 0.00 4.58
3683 4991 5.121454 GCTGATATGCTTCCTTTCCTAATCG 59.879 44.000 0.00 0.00 0.00 3.34
3684 4992 5.414144 GGCTGATATGCTTCCTTTCCTAATC 59.586 44.000 0.00 0.00 0.00 1.75
3685 4993 5.163055 TGGCTGATATGCTTCCTTTCCTAAT 60.163 40.000 0.00 0.00 0.00 1.73
3686 4994 4.165950 TGGCTGATATGCTTCCTTTCCTAA 59.834 41.667 0.00 0.00 0.00 2.69
3687 4995 3.716353 TGGCTGATATGCTTCCTTTCCTA 59.284 43.478 0.00 0.00 0.00 2.94
3688 4996 2.511218 TGGCTGATATGCTTCCTTTCCT 59.489 45.455 0.00 0.00 0.00 3.36
3689 4997 2.936202 TGGCTGATATGCTTCCTTTCC 58.064 47.619 0.00 0.00 0.00 3.13
3690 4998 4.139786 TCATGGCTGATATGCTTCCTTTC 58.860 43.478 0.00 0.00 0.00 2.62
3691 4999 4.174704 TCATGGCTGATATGCTTCCTTT 57.825 40.909 0.00 0.00 0.00 3.11
3692 5000 3.870538 TCATGGCTGATATGCTTCCTT 57.129 42.857 0.00 0.00 0.00 3.36
3693 5001 3.870538 TTCATGGCTGATATGCTTCCT 57.129 42.857 0.00 0.00 0.00 3.36
3694 5002 3.633525 TGTTTCATGGCTGATATGCTTCC 59.366 43.478 0.00 0.00 0.00 3.46
3695 5003 4.577693 TCTGTTTCATGGCTGATATGCTTC 59.422 41.667 0.00 0.00 0.00 3.86
3696 5004 4.529897 TCTGTTTCATGGCTGATATGCTT 58.470 39.130 0.00 0.00 0.00 3.91
3697 5005 4.160642 TCTGTTTCATGGCTGATATGCT 57.839 40.909 0.00 0.00 0.00 3.79
3698 5006 4.577693 TCTTCTGTTTCATGGCTGATATGC 59.422 41.667 0.00 0.00 0.00 3.14
3699 5007 5.821470 AGTCTTCTGTTTCATGGCTGATATG 59.179 40.000 0.00 0.00 0.00 1.78
3700 5008 5.821470 CAGTCTTCTGTTTCATGGCTGATAT 59.179 40.000 0.00 0.00 36.97 1.63
3701 5009 5.181009 CAGTCTTCTGTTTCATGGCTGATA 58.819 41.667 0.00 0.00 36.97 2.15
3702 5010 4.008330 CAGTCTTCTGTTTCATGGCTGAT 58.992 43.478 0.00 0.00 36.97 2.90
3703 5011 3.405831 CAGTCTTCTGTTTCATGGCTGA 58.594 45.455 0.00 0.00 36.97 4.26
3704 5012 2.486982 CCAGTCTTCTGTTTCATGGCTG 59.513 50.000 0.00 0.00 39.82 4.85
3705 5013 2.553904 CCCAGTCTTCTGTTTCATGGCT 60.554 50.000 0.00 0.00 39.82 4.75
3706 5014 1.815003 CCCAGTCTTCTGTTTCATGGC 59.185 52.381 0.00 0.00 39.82 4.40
3707 5015 3.077359 GTCCCAGTCTTCTGTTTCATGG 58.923 50.000 0.00 0.00 39.82 3.66
3708 5016 3.743521 TGTCCCAGTCTTCTGTTTCATG 58.256 45.455 0.00 0.00 39.82 3.07
3709 5017 4.137543 GTTGTCCCAGTCTTCTGTTTCAT 58.862 43.478 0.00 0.00 39.82 2.57
3710 5018 3.054728 TGTTGTCCCAGTCTTCTGTTTCA 60.055 43.478 0.00 0.00 39.82 2.69
3711 5019 3.541632 TGTTGTCCCAGTCTTCTGTTTC 58.458 45.455 0.00 0.00 39.82 2.78
3712 5020 3.644966 TGTTGTCCCAGTCTTCTGTTT 57.355 42.857 0.00 0.00 39.82 2.83
3713 5021 3.644966 TTGTTGTCCCAGTCTTCTGTT 57.355 42.857 0.00 0.00 39.82 3.16
3714 5022 3.279434 GTTTGTTGTCCCAGTCTTCTGT 58.721 45.455 0.00 0.00 39.82 3.41
3715 5023 3.278574 TGTTTGTTGTCCCAGTCTTCTG 58.721 45.455 0.00 0.00 41.01 3.02
3716 5024 3.644966 TGTTTGTTGTCCCAGTCTTCT 57.355 42.857 0.00 0.00 0.00 2.85
3717 5025 4.082463 TGTTTGTTTGTTGTCCCAGTCTTC 60.082 41.667 0.00 0.00 0.00 2.87
3718 5026 3.829601 TGTTTGTTTGTTGTCCCAGTCTT 59.170 39.130 0.00 0.00 0.00 3.01
3719 5027 3.426615 TGTTTGTTTGTTGTCCCAGTCT 58.573 40.909 0.00 0.00 0.00 3.24
3720 5028 3.192633 ACTGTTTGTTTGTTGTCCCAGTC 59.807 43.478 0.00 0.00 0.00 3.51
3721 5029 3.161866 ACTGTTTGTTTGTTGTCCCAGT 58.838 40.909 0.00 0.00 0.00 4.00
3722 5030 3.866883 ACTGTTTGTTTGTTGTCCCAG 57.133 42.857 0.00 0.00 0.00 4.45
3723 5031 5.419155 TCATTACTGTTTGTTTGTTGTCCCA 59.581 36.000 0.00 0.00 0.00 4.37
3724 5032 5.897050 TCATTACTGTTTGTTTGTTGTCCC 58.103 37.500 0.00 0.00 0.00 4.46
3725 5033 7.329717 TGTTTCATTACTGTTTGTTTGTTGTCC 59.670 33.333 0.00 0.00 0.00 4.02
3726 5034 8.233692 TGTTTCATTACTGTTTGTTTGTTGTC 57.766 30.769 0.00 0.00 0.00 3.18
3727 5035 8.085296 TCTGTTTCATTACTGTTTGTTTGTTGT 58.915 29.630 0.00 0.00 0.00 3.32
3728 5036 8.459521 TCTGTTTCATTACTGTTTGTTTGTTG 57.540 30.769 0.00 0.00 0.00 3.33
3729 5037 9.139174 CTTCTGTTTCATTACTGTTTGTTTGTT 57.861 29.630 0.00 0.00 0.00 2.83
3730 5038 8.303876 ACTTCTGTTTCATTACTGTTTGTTTGT 58.696 29.630 0.00 0.00 0.00 2.83
3731 5039 8.687824 ACTTCTGTTTCATTACTGTTTGTTTG 57.312 30.769 0.00 0.00 0.00 2.93
3732 5040 8.519526 TGACTTCTGTTTCATTACTGTTTGTTT 58.480 29.630 0.00 0.00 0.00 2.83
3733 5041 8.050778 TGACTTCTGTTTCATTACTGTTTGTT 57.949 30.769 0.00 0.00 0.00 2.83
3734 5042 7.624360 TGACTTCTGTTTCATTACTGTTTGT 57.376 32.000 0.00 0.00 0.00 2.83
3738 5046 8.784043 GGTTTATGACTTCTGTTTCATTACTGT 58.216 33.333 0.00 0.00 34.28 3.55
3739 5047 8.783093 TGGTTTATGACTTCTGTTTCATTACTG 58.217 33.333 0.00 0.00 34.28 2.74
3740 5048 8.784043 GTGGTTTATGACTTCTGTTTCATTACT 58.216 33.333 0.00 0.00 34.28 2.24
3741 5049 8.784043 AGTGGTTTATGACTTCTGTTTCATTAC 58.216 33.333 0.00 0.00 34.28 1.89
3742 5050 8.918202 AGTGGTTTATGACTTCTGTTTCATTA 57.082 30.769 0.00 0.00 34.28 1.90
3743 5051 7.823745 AGTGGTTTATGACTTCTGTTTCATT 57.176 32.000 0.00 0.00 34.28 2.57
3744 5052 7.255590 CCAAGTGGTTTATGACTTCTGTTTCAT 60.256 37.037 0.00 0.00 36.43 2.57
3745 5053 6.039270 CCAAGTGGTTTATGACTTCTGTTTCA 59.961 38.462 0.00 0.00 29.73 2.69
3746 5054 6.262273 TCCAAGTGGTTTATGACTTCTGTTTC 59.738 38.462 0.00 0.00 36.34 2.78
3747 5055 6.126409 TCCAAGTGGTTTATGACTTCTGTTT 58.874 36.000 0.00 0.00 36.34 2.83
3748 5056 5.690865 TCCAAGTGGTTTATGACTTCTGTT 58.309 37.500 0.00 0.00 36.34 3.16
3749 5057 5.304686 TCCAAGTGGTTTATGACTTCTGT 57.695 39.130 0.00 0.00 36.34 3.41
3750 5058 5.334105 CGTTCCAAGTGGTTTATGACTTCTG 60.334 44.000 0.00 0.00 36.34 3.02
3751 5059 4.755123 CGTTCCAAGTGGTTTATGACTTCT 59.245 41.667 0.00 0.00 36.34 2.85
3752 5060 5.030874 CGTTCCAAGTGGTTTATGACTTC 57.969 43.478 0.00 0.00 36.34 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.