Multiple sequence alignment - TraesCS4D01G053800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G053800 chr4D 100.000 6664 0 0 1 6664 29835597 29828934 0.000000e+00 12307.0
1 TraesCS4D01G053800 chr4D 92.308 65 5 0 2592 2656 326382511 326382447 7.120000e-15 93.5
2 TraesCS4D01G053800 chr4D 84.706 85 11 2 4801 4884 50531367 50531450 4.280000e-12 84.2
3 TraesCS4D01G053800 chr4D 84.706 85 11 2 4801 4884 53611796 53611879 4.280000e-12 84.2
4 TraesCS4D01G053800 chr4D 79.646 113 15 6 6006 6117 432768155 432768260 2.580000e-09 75.0
5 TraesCS4D01G053800 chr4D 92.000 50 3 1 4751 4799 67330998 67330949 1.200000e-07 69.4
6 TraesCS4D01G053800 chr4A 96.688 3140 76 10 2653 5783 573322682 573325802 0.000000e+00 5197.0
7 TraesCS4D01G053800 chr4A 91.495 2375 138 33 1 2353 573320352 573322684 0.000000e+00 3208.0
8 TraesCS4D01G053800 chr4A 91.619 525 36 4 6140 6664 573326069 573326585 0.000000e+00 719.0
9 TraesCS4D01G053800 chr4A 97.345 113 3 0 2349 2461 137967143 137967031 6.820000e-45 193.0
10 TraesCS4D01G053800 chr4A 97.345 113 3 0 2349 2461 137972666 137972778 6.820000e-45 193.0
11 TraesCS4D01G053800 chr4A 96.078 51 1 1 4751 4800 717312587 717312537 1.540000e-11 82.4
12 TraesCS4D01G053800 chr4A 92.308 52 3 1 4751 4801 618462258 618462207 9.270000e-09 73.1
13 TraesCS4D01G053800 chr4B 95.524 2614 75 25 3305 5879 42399080 42396470 0.000000e+00 4141.0
14 TraesCS4D01G053800 chr4B 92.085 1933 114 24 430 2353 42401611 42399709 0.000000e+00 2686.0
15 TraesCS4D01G053800 chr4B 95.110 634 21 2 2653 3276 42399711 42399078 0.000000e+00 990.0
16 TraesCS4D01G053800 chr4B 92.979 527 34 2 6140 6664 42396393 42395868 0.000000e+00 765.0
17 TraesCS4D01G053800 chr4B 88.764 89 9 1 4801 4889 22844115 22844028 2.540000e-19 108.0
18 TraesCS4D01G053800 chr4B 93.151 73 5 0 4801 4873 416154964 416154892 2.540000e-19 108.0
19 TraesCS4D01G053800 chr4B 95.312 64 3 0 2592 2655 532435099 532435162 1.180000e-17 102.0
20 TraesCS4D01G053800 chr4B 95.312 64 3 0 2592 2655 580387263 580387326 1.180000e-17 102.0
21 TraesCS4D01G053800 chr4B 82.258 124 14 3 6006 6128 659336617 659336501 4.250000e-17 100.0
22 TraesCS4D01G053800 chr4B 81.600 125 13 5 6006 6128 165298989 165299105 1.980000e-15 95.3
23 TraesCS4D01G053800 chr4B 78.862 123 20 5 6006 6128 216903951 216903835 1.990000e-10 78.7
24 TraesCS4D01G053800 chr4B 94.231 52 2 1 4751 4801 416154970 416154919 1.990000e-10 78.7
25 TraesCS4D01G053800 chr4B 78.226 124 19 7 6006 6128 644949622 644949506 9.270000e-09 73.1
26 TraesCS4D01G053800 chr5A 85.574 305 26 6 2351 2655 607836567 607836853 3.020000e-78 303.0
27 TraesCS4D01G053800 chr5A 96.212 132 5 0 2462 2593 135538709 135538578 4.050000e-52 217.0
28 TraesCS4D01G053800 chr5A 86.154 130 6 6 6001 6128 367133167 367133286 5.420000e-26 130.0
29 TraesCS4D01G053800 chr5A 94.118 68 4 0 2592 2659 21421147 21421214 3.290000e-18 104.0
30 TraesCS4D01G053800 chr5D 85.113 309 27 10 2356 2664 508159099 508158810 1.400000e-76 298.0
31 TraesCS4D01G053800 chr5D 96.212 132 5 0 2464 2595 261390290 261390159 4.050000e-52 217.0
32 TraesCS4D01G053800 chr5D 93.827 81 3 1 4801 4879 535136254 535136174 3.260000e-23 121.0
33 TraesCS4D01G053800 chr5D 96.923 65 2 0 2592 2656 432985985 432985921 7.070000e-20 110.0
34 TraesCS4D01G053800 chr5D 89.873 79 8 0 4801 4879 188826541 188826619 1.180000e-17 102.0
35 TraesCS4D01G053800 chr5D 90.411 73 5 2 2596 2666 514862690 514862762 1.980000e-15 95.3
36 TraesCS4D01G053800 chr5D 92.000 50 1 2 4742 4790 3238100 3238053 4.310000e-07 67.6
37 TraesCS4D01G053800 chr5D 95.000 40 2 0 4751 4790 518794530 518794569 5.580000e-06 63.9
38 TraesCS4D01G053800 chr5D 89.583 48 4 1 4750 4796 531515783 531515830 7.220000e-05 60.2
39 TraesCS4D01G053800 chr3A 95.679 162 7 0 1951 2112 34532611 34532450 1.840000e-65 261.0
40 TraesCS4D01G053800 chr3A 94.479 163 9 0 1951 2113 83748183 83748021 1.110000e-62 252.0
41 TraesCS4D01G053800 chr3A 84.496 129 12 3 6001 6128 332556166 332556287 3.260000e-23 121.0
42 TraesCS4D01G053800 chr3A 94.203 69 3 1 2592 2660 625536847 625536914 3.290000e-18 104.0
43 TraesCS4D01G053800 chr7B 95.062 162 8 0 1951 2112 522721475 522721314 8.580000e-64 255.0
44 TraesCS4D01G053800 chr7B 95.614 114 5 0 2348 2461 490208155 490208042 4.100000e-42 183.0
45 TraesCS4D01G053800 chr7B 91.026 78 5 1 2592 2667 490208053 490207976 3.290000e-18 104.0
46 TraesCS4D01G053800 chr7B 94.231 52 2 1 4751 4801 113163415 113163364 1.990000e-10 78.7
47 TraesCS4D01G053800 chr3D 95.062 162 8 0 1951 2112 71517840 71517679 8.580000e-64 255.0
48 TraesCS4D01G053800 chr3D 95.000 160 8 0 1953 2112 426452019 426451860 1.110000e-62 252.0
49 TraesCS4D01G053800 chr3D 94.891 137 6 1 2459 2595 210622556 210622421 5.230000e-51 213.0
50 TraesCS4D01G053800 chr3D 84.496 129 12 3 6001 6128 251316138 251316017 3.260000e-23 121.0
51 TraesCS4D01G053800 chr3D 92.647 68 5 0 2592 2659 526462508 526462575 1.530000e-16 99.0
52 TraesCS4D01G053800 chr3D 81.452 124 15 3 6006 6128 225859710 225859594 1.980000e-15 95.3
53 TraesCS4D01G053800 chr3D 94.231 52 2 1 4751 4801 26655412 26655361 1.990000e-10 78.7
54 TraesCS4D01G053800 chr3D 95.652 46 1 1 4750 4794 320835081 320835036 9.270000e-09 73.1
55 TraesCS4D01G053800 chr3B 95.062 162 8 0 1951 2112 42630980 42630819 8.580000e-64 255.0
56 TraesCS4D01G053800 chr3B 91.358 81 5 2 4801 4880 474402008 474402087 7.070000e-20 110.0
57 TraesCS4D01G053800 chr1D 94.444 162 9 0 1951 2112 175819998 175819837 3.990000e-62 250.0
58 TraesCS4D01G053800 chr1D 96.212 132 5 0 2464 2595 194139900 194139769 4.050000e-52 217.0
59 TraesCS4D01G053800 chr1D 96.610 118 4 0 2344 2461 463381897 463382014 5.270000e-46 196.0
60 TraesCS4D01G053800 chr1D 91.250 80 7 0 4801 4880 216718800 216718721 7.070000e-20 110.0
61 TraesCS4D01G053800 chr1D 95.312 64 3 0 2592 2655 286378384 286378321 1.180000e-17 102.0
62 TraesCS4D01G053800 chr1D 89.873 79 8 0 4801 4879 474019158 474019080 1.180000e-17 102.0
63 TraesCS4D01G053800 chr1D 82.258 124 14 3 6006 6128 108103165 108103281 4.250000e-17 100.0
64 TraesCS4D01G053800 chr1D 93.846 65 4 0 2592 2656 19891476 19891540 1.530000e-16 99.0
65 TraesCS4D01G053800 chr1D 88.608 79 9 0 4801 4879 245893777 245893699 5.500000e-16 97.1
66 TraesCS4D01G053800 chr1D 93.750 64 4 0 2592 2655 314014359 314014422 5.500000e-16 97.1
67 TraesCS4D01G053800 chr1D 93.750 64 4 0 2592 2655 330529628 330529565 5.500000e-16 97.1
68 TraesCS4D01G053800 chr1D 86.364 88 8 3 4801 4887 132857913 132857829 7.120000e-15 93.5
69 TraesCS4D01G053800 chr1D 91.176 68 6 0 2592 2659 326255595 326255528 7.120000e-15 93.5
70 TraesCS4D01G053800 chr1D 90.278 72 4 3 2595 2664 227653319 227653249 2.560000e-14 91.6
71 TraesCS4D01G053800 chr1D 96.296 54 2 0 6068 6121 439878901 439878848 9.200000e-14 89.8
72 TraesCS4D01G053800 chr1D 78.462 130 20 7 6000 6128 53018184 53018306 1.990000e-10 78.7
73 TraesCS4D01G053800 chr2B 81.013 316 38 10 2342 2656 62623505 62623799 1.450000e-56 231.0
74 TraesCS4D01G053800 chr2B 81.013 316 38 10 2342 2656 62625320 62625614 1.450000e-56 231.0
75 TraesCS4D01G053800 chr2B 82.171 129 17 3 6001 6128 653689695 653689818 9.140000e-19 106.0
76 TraesCS4D01G053800 chr2B 88.525 61 6 1 4742 4801 224584371 224584431 9.270000e-09 73.1
77 TraesCS4D01G053800 chr5B 95.522 134 6 0 2463 2596 640272737 640272870 1.460000e-51 215.0
78 TraesCS4D01G053800 chr5B 95.062 81 3 1 4801 4881 582158143 582158222 7.020000e-25 126.0
79 TraesCS4D01G053800 chr5B 89.744 78 6 2 2592 2669 455982123 455982198 1.530000e-16 99.0
80 TraesCS4D01G053800 chr5B 96.154 52 1 1 4751 4801 582158137 582158188 4.280000e-12 84.2
81 TraesCS4D01G053800 chr7D 97.273 110 3 0 2352 2461 500775618 500775509 3.170000e-43 187.0
82 TraesCS4D01G053800 chr7D 95.614 114 5 0 2348 2461 465477950 465477837 4.100000e-42 183.0
83 TraesCS4D01G053800 chr7D 89.412 85 8 1 4801 4885 463263079 463263162 9.140000e-19 106.0
84 TraesCS4D01G053800 chr7D 90.000 80 6 2 2584 2661 119749002 119749081 1.180000e-17 102.0
85 TraesCS4D01G053800 chr7D 81.452 124 15 3 6006 6128 125836425 125836541 1.980000e-15 95.3
86 TraesCS4D01G053800 chr7D 88.750 80 5 2 2592 2667 465477848 465477769 1.980000e-15 95.3
87 TraesCS4D01G053800 chr1B 92.969 128 7 2 2336 2461 334894684 334894557 1.140000e-42 185.0
88 TraesCS4D01G053800 chr1B 92.405 79 6 0 4801 4879 92616636 92616714 5.460000e-21 113.0
89 TraesCS4D01G053800 chr1B 90.000 80 8 0 4801 4880 310360976 310360897 3.290000e-18 104.0
90 TraesCS4D01G053800 chr1B 95.312 64 3 0 2592 2655 6260835 6260898 1.180000e-17 102.0
91 TraesCS4D01G053800 chr1B 89.610 77 8 0 2592 2668 470935588 470935512 1.530000e-16 99.0
92 TraesCS4D01G053800 chr6A 81.659 229 28 13 2437 2655 75918073 75918297 1.910000e-40 178.0
93 TraesCS4D01G053800 chr6A 91.667 84 7 0 4801 4884 420829782 420829865 4.220000e-22 117.0
94 TraesCS4D01G053800 chr6A 97.826 46 0 1 4751 4795 356112246 356112291 1.990000e-10 78.7
95 TraesCS4D01G053800 chr6A 93.333 45 2 1 4750 4793 39289735 39289691 1.550000e-06 65.8
96 TraesCS4D01G053800 chr2D 86.047 129 12 3 6001 6128 547203481 547203604 4.190000e-27 134.0
97 TraesCS4D01G053800 chr2D 94.231 52 2 1 4751 4801 97219731 97219680 1.990000e-10 78.7
98 TraesCS4D01G053800 chr6B 91.667 84 7 0 4801 4884 462028773 462028690 4.220000e-22 117.0
99 TraesCS4D01G053800 chr6B 81.452 124 15 3 6006 6128 672460586 672460470 1.980000e-15 95.3
100 TraesCS4D01G053800 chr6B 90.741 54 4 1 4749 4801 675195025 675195078 3.330000e-08 71.3
101 TraesCS4D01G053800 chr1A 91.566 83 6 1 4801 4883 558332227 558332146 5.460000e-21 113.0
102 TraesCS4D01G053800 chr1A 88.750 80 9 0 4801 4880 436259659 436259738 1.530000e-16 99.0
103 TraesCS4D01G053800 chr1A 92.537 67 5 0 2592 2658 325051837 325051903 5.500000e-16 97.1
104 TraesCS4D01G053800 chr1A 80.000 120 16 3 6000 6118 99177529 99177641 1.540000e-11 82.4
105 TraesCS4D01G053800 chr1A 81.905 105 11 3 6014 6117 282703719 282703816 1.540000e-11 82.4
106 TraesCS4D01G053800 chr1A 94.118 51 2 1 4747 4796 498666626 498666576 7.170000e-10 76.8
107 TraesCS4D01G053800 chr1A 80.952 105 10 5 6014 6117 282707793 282707888 2.580000e-09 75.0
108 TraesCS4D01G053800 chr1A 97.619 42 0 1 4750 4790 382550774 382550733 3.330000e-08 71.3
109 TraesCS4D01G053800 chr6D 91.139 79 7 0 4801 4879 3346664 3346586 2.540000e-19 108.0
110 TraesCS4D01G053800 chr6D 88.608 79 9 0 4801 4879 142148793 142148715 5.500000e-16 97.1
111 TraesCS4D01G053800 chr6D 88.889 81 5 4 4804 4882 368363656 368363578 5.500000e-16 97.1
112 TraesCS4D01G053800 chr6D 96.552 58 1 1 6066 6122 16831178 16831121 1.980000e-15 95.3
113 TraesCS4D01G053800 chr6D 95.082 61 2 1 2596 2655 25766871 25766931 1.980000e-15 95.3
114 TraesCS4D01G053800 chr6D 86.905 84 9 2 4801 4883 129710211 129710129 7.120000e-15 93.5
115 TraesCS4D01G053800 chr6D 92.188 64 5 0 2592 2655 372146769 372146706 2.560000e-14 91.6
116 TraesCS4D01G053800 chr6D 92.188 64 5 0 2592 2655 428908436 428908499 2.560000e-14 91.6
117 TraesCS4D01G053800 chr6D 91.045 67 5 1 2592 2658 366999161 366999096 9.200000e-14 89.8
118 TraesCS4D01G053800 chr6D 80.488 123 18 4 5995 6117 433035718 433035602 9.200000e-14 89.8
119 TraesCS4D01G053800 chr6D 87.838 74 8 1 2592 2665 461485146 461485074 1.190000e-12 86.1
120 TraesCS4D01G053800 chr6D 84.706 85 11 2 4801 4884 93317735 93317818 4.280000e-12 84.2
121 TraesCS4D01G053800 chr6D 85.000 80 10 2 4806 4884 115754554 115754476 5.540000e-11 80.5
122 TraesCS4D01G053800 chr6D 83.721 86 10 4 4801 4884 48061863 48061780 1.990000e-10 78.7
123 TraesCS4D01G053800 chrUn 92.308 65 4 1 2595 2658 96478285 96478221 2.560000e-14 91.6
124 TraesCS4D01G053800 chrUn 89.333 75 3 3 2592 2662 28616024 28615951 9.200000e-14 89.8
125 TraesCS4D01G053800 chrUn 92.188 64 4 1 2592 2655 86671379 86671317 9.200000e-14 89.8
126 TraesCS4D01G053800 chrUn 92.063 63 5 0 2596 2658 141680848 141680910 9.200000e-14 89.8
127 TraesCS4D01G053800 chrUn 88.571 70 8 0 2592 2661 47449555 47449486 1.190000e-12 86.1
128 TraesCS4D01G053800 chrUn 90.625 64 6 0 2592 2655 86734273 86734336 1.190000e-12 86.1
129 TraesCS4D01G053800 chrUn 93.103 58 4 0 2598 2655 96478327 96478384 1.190000e-12 86.1
130 TraesCS4D01G053800 chrUn 87.013 77 9 1 2592 2668 320881641 320881566 1.190000e-12 86.1
131 TraesCS4D01G053800 chrUn 84.524 84 9 4 4801 4882 100223745 100223826 5.540000e-11 80.5
132 TraesCS4D01G053800 chrUn 82.955 88 11 4 4801 4886 461112362 461112277 7.170000e-10 76.8
133 TraesCS4D01G053800 chrUn 83.333 84 10 4 4801 4882 222975776 222975857 2.580000e-09 75.0
134 TraesCS4D01G053800 chrUn 83.333 84 10 4 4801 4882 303647910 303647991 2.580000e-09 75.0
135 TraesCS4D01G053800 chrUn 95.349 43 2 0 4839 4881 17059827 17059785 1.200000e-07 69.4
136 TraesCS4D01G053800 chrUn 81.928 83 11 4 4801 4881 41678405 41678325 4.310000e-07 67.6
137 TraesCS4D01G053800 chrUn 82.353 85 8 5 4801 4881 84435386 84435467 4.310000e-07 67.6
138 TraesCS4D01G053800 chrUn 100.000 33 0 0 4847 4879 23609530 23609562 2.010000e-05 62.1
139 TraesCS4D01G053800 chr7A 80.153 131 16 5 6000 6128 28588176 28588298 9.200000e-14 89.8
140 TraesCS4D01G053800 chr2A 90.164 61 5 1 4742 4801 176564411 176564471 1.990000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G053800 chr4D 29828934 29835597 6663 True 12307.000000 12307 100.000000 1 6664 1 chr4D.!!$R1 6663
1 TraesCS4D01G053800 chr4A 573320352 573326585 6233 False 3041.333333 5197 93.267333 1 6664 3 chr4A.!!$F2 6663
2 TraesCS4D01G053800 chr4B 42395868 42401611 5743 True 2145.500000 4141 93.924500 430 6664 4 chr4B.!!$R5 6234
3 TraesCS4D01G053800 chr2B 62623505 62625614 2109 False 231.000000 231 81.013000 2342 2656 2 chr2B.!!$F3 314

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.462047 CTGCTACTTAGGCGGTTGGG 60.462 60.000 0.00 0.00 0.00 4.12 F
1326 1348 0.025513 CTGTTTATGTCTGCGCTCGC 59.974 55.000 9.73 7.38 42.35 5.03 F
2489 2514 1.004277 TCCCTCCGTCCCAAAATTCTG 59.996 52.381 0.00 0.00 0.00 3.02 F
2588 2613 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30 F
3564 3601 2.599578 CCACCAAAGGCTGCTGCT 60.600 61.111 15.64 0.00 39.59 4.24 F
4881 4938 0.042131 ATGGGACGGAGGGAGTAACA 59.958 55.000 0.00 0.00 0.00 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1500 1522 0.233074 CATTGTACTATGCCGCAGCG 59.767 55.000 8.18 8.18 44.31 5.18 R
2571 2596 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17 R
3563 3600 0.758685 TGGGGCTTTTGGTGTTGGAG 60.759 55.000 0.00 0.00 0.00 3.86 R
3566 3603 1.069596 GCTGGGGCTTTTGGTGTTG 59.930 57.895 0.00 0.00 35.22 3.33 R
5025 5083 1.734465 CTGACGCCTCAGAATGGTTTC 59.266 52.381 6.87 0.00 46.32 2.78 R
5909 6046 0.249120 TGCAGGGAATACACCGACAG 59.751 55.000 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.661617 GTGCGTTATGGCGATGTAACA 59.338 47.619 0.00 0.00 35.06 2.41
41 42 4.369182 GTTATGGCGATGTAACACTAGCT 58.631 43.478 0.00 0.00 32.45 3.32
43 44 0.931005 GGCGATGTAACACTAGCTGC 59.069 55.000 0.00 0.00 0.00 5.25
65 66 0.462047 CTGCTACTTAGGCGGTTGGG 60.462 60.000 0.00 0.00 0.00 4.12
66 67 1.818363 GCTACTTAGGCGGTTGGGC 60.818 63.158 0.00 0.00 42.69 5.36
96 97 3.884037 TGGCCTCTCTTCCTTTCTTTT 57.116 42.857 3.32 0.00 0.00 2.27
101 102 4.812442 GCCTCTCTTCCTTTCTTTTCCCAT 60.812 45.833 0.00 0.00 0.00 4.00
102 103 4.704057 CCTCTCTTCCTTTCTTTTCCCATG 59.296 45.833 0.00 0.00 0.00 3.66
109 110 4.026052 CCTTTCTTTTCCCATGGCTACAT 58.974 43.478 6.09 0.00 37.99 2.29
122 123 0.837272 GCTACATGGGGCCTACTTCA 59.163 55.000 0.84 0.00 0.00 3.02
126 127 2.208872 ACATGGGGCCTACTTCAAGAT 58.791 47.619 0.84 0.00 0.00 2.40
139 140 7.868415 GCCTACTTCAAGATACCTAATGTACAG 59.132 40.741 0.33 0.00 30.62 2.74
177 178 4.382541 CTTCCACCTTGGGGGCCC 62.383 72.222 15.76 15.76 38.32 5.80
222 223 3.537874 GCCCGTGCCGGTCTCTAT 61.538 66.667 1.90 0.00 46.80 1.98
223 224 3.090219 GCCCGTGCCGGTCTCTATT 62.090 63.158 1.90 0.00 46.80 1.73
224 225 1.741327 GCCCGTGCCGGTCTCTATTA 61.741 60.000 1.90 0.00 46.80 0.98
225 226 0.966920 CCCGTGCCGGTCTCTATTAT 59.033 55.000 1.90 0.00 46.80 1.28
234 235 2.794910 CGGTCTCTATTATTGCCGTGTG 59.205 50.000 0.00 0.00 35.11 3.82
240 241 1.365699 ATTATTGCCGTGTGGACGTC 58.634 50.000 7.13 7.13 44.54 4.34
247 248 1.299850 CGTGTGGACGTCTCTTGCA 60.300 57.895 16.46 0.93 40.91 4.08
248 249 0.874175 CGTGTGGACGTCTCTTGCAA 60.874 55.000 16.46 0.00 40.91 4.08
256 257 3.321497 GACGTCTCTTGCAATCTTGTCT 58.679 45.455 8.70 0.00 0.00 3.41
303 305 5.986004 GCTGGTAGCGTAGAAATATGTTT 57.014 39.130 0.00 0.00 0.00 2.83
307 309 5.293324 TGGTAGCGTAGAAATATGTTTGCTG 59.707 40.000 7.47 0.00 32.93 4.41
315 317 9.507280 CGTAGAAATATGTTTGCTGATTTTCAT 57.493 29.630 0.00 0.00 0.00 2.57
332 334 3.696281 TCATGCCGTTGCTAATGAATG 57.304 42.857 0.00 0.00 38.71 2.67
334 336 4.195416 TCATGCCGTTGCTAATGAATGTA 58.805 39.130 0.00 0.00 38.71 2.29
339 341 4.494199 GCCGTTGCTAATGAATGTACTGAC 60.494 45.833 0.00 0.00 33.53 3.51
341 343 6.040247 CCGTTGCTAATGAATGTACTGACTA 58.960 40.000 0.00 0.00 0.00 2.59
342 344 6.701841 CCGTTGCTAATGAATGTACTGACTAT 59.298 38.462 0.00 0.00 0.00 2.12
343 345 7.865889 CCGTTGCTAATGAATGTACTGACTATA 59.134 37.037 0.00 0.00 0.00 1.31
397 401 3.347216 GGAACCAACATGCATGACTAGT 58.653 45.455 32.75 19.49 0.00 2.57
406 410 6.187125 ACATGCATGACTAGTTTGACAATC 57.813 37.500 32.75 0.00 0.00 2.67
411 415 5.641209 GCATGACTAGTTTGACAATCACTCT 59.359 40.000 10.11 0.00 0.00 3.24
483 490 9.325198 ACAAAAAGATGATAATATGTAGCGTCA 57.675 29.630 0.00 0.00 0.00 4.35
505 512 4.854291 CACTCTCGTTGCTAGACTTTAGTG 59.146 45.833 0.00 0.00 0.00 2.74
506 513 4.760715 ACTCTCGTTGCTAGACTTTAGTGA 59.239 41.667 0.00 0.00 0.00 3.41
671 679 7.390718 TGCTAATCTTCCTTTCAAGAAACTACC 59.609 37.037 0.00 0.00 35.99 3.18
672 680 7.148222 GCTAATCTTCCTTTCAAGAAACTACCC 60.148 40.741 0.00 0.00 35.99 3.69
686 694 6.803642 AGAAACTACCCGTAGATCACAATAC 58.196 40.000 8.84 0.00 36.97 1.89
687 695 5.526506 AACTACCCGTAGATCACAATACC 57.473 43.478 8.84 0.00 36.97 2.73
688 696 4.539726 ACTACCCGTAGATCACAATACCA 58.460 43.478 8.84 0.00 36.97 3.25
689 697 5.145564 ACTACCCGTAGATCACAATACCAT 58.854 41.667 8.84 0.00 36.97 3.55
692 700 8.111545 ACTACCCGTAGATCACAATACCATATA 58.888 37.037 8.84 0.00 36.97 0.86
693 701 7.406031 ACCCGTAGATCACAATACCATATAG 57.594 40.000 0.00 0.00 0.00 1.31
694 702 6.380274 ACCCGTAGATCACAATACCATATAGG 59.620 42.308 0.00 0.00 45.67 2.57
695 703 6.605995 CCCGTAGATCACAATACCATATAGGA 59.394 42.308 0.00 0.00 41.22 2.94
696 704 7.201830 CCCGTAGATCACAATACCATATAGGAG 60.202 44.444 0.00 0.00 41.22 3.69
739 748 4.854399 TGGTACTTTCATCTTGTTTTGCG 58.146 39.130 0.00 0.00 0.00 4.85
746 755 6.359617 ACTTTCATCTTGTTTTGCGAATTACG 59.640 34.615 0.00 0.00 45.66 3.18
756 765 1.597195 TGCGAATTACGGTGCATGATC 59.403 47.619 0.00 0.00 42.83 2.92
778 795 7.919091 TGATCGAGTATGTGGTACTGTAATTTC 59.081 37.037 0.00 0.00 43.66 2.17
779 796 7.160547 TCGAGTATGTGGTACTGTAATTTCA 57.839 36.000 0.00 0.00 43.66 2.69
821 838 4.750598 CAGCATCTCACAATCTCATGTAGG 59.249 45.833 0.00 0.00 30.84 3.18
822 839 3.497640 GCATCTCACAATCTCATGTAGGC 59.502 47.826 0.00 0.00 30.84 3.93
894 911 0.667184 CATCAAAACCGCAACCAGCC 60.667 55.000 0.00 0.00 41.38 4.85
1211 1233 4.767255 GGTGCTCGAGGCCACCAG 62.767 72.222 27.59 0.00 39.86 4.00
1314 1336 1.539065 CCGCCTCGATCTGCTGTTTAT 60.539 52.381 0.00 0.00 0.00 1.40
1326 1348 0.025513 CTGTTTATGTCTGCGCTCGC 59.974 55.000 9.73 7.38 42.35 5.03
1341 1363 3.610669 CGCCCCTCAGATCTCCGG 61.611 72.222 0.00 0.00 0.00 5.14
1365 1387 3.370231 CCCTTCGGTTTTGGGGCG 61.370 66.667 0.00 0.00 37.37 6.13
1422 1444 4.227527 ACCCGAGATTTTGATCCTAGGTTT 59.772 41.667 9.08 0.00 0.00 3.27
1427 1449 7.048512 CGAGATTTTGATCCTAGGTTTAGGTT 58.951 38.462 9.08 0.00 45.71 3.50
1487 1509 3.749226 TGATGTCACTGTTGTAATGGCA 58.251 40.909 0.00 0.00 31.44 4.92
1547 1569 4.497006 CGTGCTTGATGGATCTGGAAAATC 60.497 45.833 0.00 0.00 0.00 2.17
1579 1601 7.648908 TGCAATTCTTACATCACTGAACTTTTG 59.351 33.333 0.00 0.00 0.00 2.44
1580 1602 7.358683 GCAATTCTTACATCACTGAACTTTTGC 60.359 37.037 0.00 0.00 30.41 3.68
1581 1603 6.942532 TTCTTACATCACTGAACTTTTGCT 57.057 33.333 0.00 0.00 0.00 3.91
1613 1636 1.134907 CAGAAACCTGCATCAATGGCC 60.135 52.381 0.00 0.00 0.00 5.36
1782 1805 1.068610 GCTGCGGTTAGTGAAATTGCA 60.069 47.619 0.00 0.00 0.00 4.08
1815 1839 2.290093 GAGTCCGGTCGAGGTTATACAG 59.710 54.545 0.00 0.00 0.00 2.74
2028 2052 3.570638 CGGCCTCTCTGCATTGCG 61.571 66.667 0.00 0.00 0.00 4.85
2029 2053 2.437359 GGCCTCTCTGCATTGCGT 60.437 61.111 3.84 0.00 0.00 5.24
2254 2279 6.102663 AGTGAGATGCATCTGTAACACTTAC 58.897 40.000 33.33 14.86 35.82 2.34
2326 2351 8.904834 TCTGGTTGTCACTACTAGATTATTCTC 58.095 37.037 1.31 0.00 33.17 2.87
2361 2386 3.899052 TTTTACCATGTACTCCCTCCG 57.101 47.619 0.00 0.00 0.00 4.63
2364 2389 1.192428 ACCATGTACTCCCTCCGTTC 58.808 55.000 0.00 0.00 0.00 3.95
2376 2401 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2378 2403 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2403 2428 5.808366 TTAGAGATTCCAATGCGGACTAT 57.192 39.130 0.00 0.00 46.36 2.12
2405 2430 7.482169 TTAGAGATTCCAATGCGGACTATAT 57.518 36.000 0.00 0.00 46.36 0.86
2418 2443 4.091509 GCGGACTATATACGGAGCAAAATG 59.908 45.833 0.00 0.00 0.00 2.32
2445 2470 9.469097 AGTGAATCTACACTCTAAAGTATGTCT 57.531 33.333 0.00 0.00 46.36 3.41
2489 2514 1.004277 TCCCTCCGTCCCAAAATTCTG 59.996 52.381 0.00 0.00 0.00 3.02
2495 2520 3.328343 TCCGTCCCAAAATTCTGGTCTTA 59.672 43.478 0.00 0.00 34.33 2.10
2503 2528 7.039784 TCCCAAAATTCTGGTCTTAGATTTGTG 60.040 37.037 0.00 0.00 34.33 3.33
2527 2552 7.490079 GTGTAAATACGGATGTATCAAGTCACA 59.510 37.037 0.00 0.00 40.42 3.58
2535 2560 8.255206 ACGGATGTATCAAGTCACATTTTAGTA 58.745 33.333 0.00 0.00 35.55 1.82
2588 2613 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2619 2644 9.923143 CATCCGTATGTAGTCCTTATTGAAATA 57.077 33.333 0.00 0.00 0.00 1.40
2697 2722 5.241728 ACAAAAGCATTAGGAGACAACCTTC 59.758 40.000 0.00 0.00 41.00 3.46
2709 2740 7.997482 AGGAGACAACCTTCTTTTTAAAGTTC 58.003 34.615 2.44 0.00 36.86 3.01
2777 2808 6.664428 ACATGCTACCTTGTATTTTTGGTT 57.336 33.333 0.00 0.00 34.33 3.67
2778 2809 7.768807 ACATGCTACCTTGTATTTTTGGTTA 57.231 32.000 0.00 0.00 34.33 2.85
3024 3061 4.779993 ACATAATTCTGGAAGGGGACTC 57.220 45.455 0.00 0.00 42.68 3.36
3045 3082 4.439057 TCTCGGGATTATGAAGTTTTCGG 58.561 43.478 0.00 0.00 0.00 4.30
3148 3185 6.923508 GTCTTTTTCCGAAACCTTTGATGAAT 59.076 34.615 0.00 0.00 0.00 2.57
3193 3230 9.655769 CACACATGCTAATTCATAGTAATTGAC 57.344 33.333 0.00 0.00 33.87 3.18
3220 3257 7.954788 TTTTGGGTGAAACATTTACTTATGC 57.045 32.000 0.00 0.00 39.98 3.14
3223 3260 6.919721 TGGGTGAAACATTTACTTATGCTTC 58.080 36.000 0.00 0.00 39.98 3.86
3353 3390 9.673454 AAAATTTTCATTCTACTACGAAACCAC 57.327 29.630 0.00 0.00 0.00 4.16
3363 3400 7.031372 TCTACTACGAAACCACATGTGTATTC 58.969 38.462 23.79 22.66 0.00 1.75
3562 3599 3.045142 CACCACCAAAGGCTGCTG 58.955 61.111 0.00 0.00 0.00 4.41
3563 3600 2.914097 ACCACCAAAGGCTGCTGC 60.914 61.111 7.10 7.10 38.76 5.25
3564 3601 2.599578 CCACCAAAGGCTGCTGCT 60.600 61.111 15.64 0.00 39.59 4.24
3565 3602 2.633509 CCACCAAAGGCTGCTGCTC 61.634 63.158 15.64 5.79 39.59 4.26
3566 3603 2.282745 ACCAAAGGCTGCTGCTCC 60.283 61.111 15.64 2.11 39.59 4.70
3567 3604 2.282674 CCAAAGGCTGCTGCTCCA 60.283 61.111 15.64 0.00 39.59 3.86
3568 3605 1.904865 CCAAAGGCTGCTGCTCCAA 60.905 57.895 15.64 0.00 39.59 3.53
3569 3606 1.288127 CAAAGGCTGCTGCTCCAAC 59.712 57.895 15.64 0.00 39.59 3.77
3570 3607 1.152694 AAAGGCTGCTGCTCCAACA 60.153 52.632 15.64 0.00 39.59 3.33
3571 3608 1.458639 AAAGGCTGCTGCTCCAACAC 61.459 55.000 15.64 0.00 39.59 3.32
3572 3609 3.368571 GGCTGCTGCTCCAACACC 61.369 66.667 15.64 0.00 39.59 4.16
3573 3610 2.595463 GCTGCTGCTCCAACACCA 60.595 61.111 8.53 0.00 36.03 4.17
3574 3611 2.195567 GCTGCTGCTCCAACACCAA 61.196 57.895 8.53 0.00 36.03 3.67
3575 3612 1.737355 GCTGCTGCTCCAACACCAAA 61.737 55.000 8.53 0.00 36.03 3.28
3576 3613 0.746063 CTGCTGCTCCAACACCAAAA 59.254 50.000 0.00 0.00 0.00 2.44
3769 3821 7.391833 GTCTATGACCAGAGATTTGTTTCCTTT 59.608 37.037 0.00 0.00 30.72 3.11
4103 4158 1.978617 CAGGCCCAACCATGTGGAC 60.979 63.158 5.96 0.00 41.65 4.02
4171 4226 4.183865 CACAGAAATAGATGGACTTGCGA 58.816 43.478 0.00 0.00 0.00 5.10
4193 4249 5.336531 CGAGTAGTTGAGAGGGAGCTAAAAA 60.337 44.000 0.00 0.00 0.00 1.94
4357 4414 5.717078 AAACACTCATCTCGTACTAACCA 57.283 39.130 0.00 0.00 0.00 3.67
4881 4938 0.042131 ATGGGACGGAGGGAGTAACA 59.958 55.000 0.00 0.00 0.00 2.41
5025 5083 4.202141 TGGAATTGTTTTCAAGGTCAGCAG 60.202 41.667 0.00 0.00 43.41 4.24
5076 5134 8.721019 TGATATTGCATTTCTTTTTGGGAATC 57.279 30.769 0.00 0.00 0.00 2.52
5223 5281 3.364023 GTGTCATCGGTCTAAAAGTGTCG 59.636 47.826 0.00 0.00 0.00 4.35
5225 5283 1.320555 CATCGGTCTAAAAGTGTCGCG 59.679 52.381 0.00 0.00 0.00 5.87
5464 5525 1.220749 GGCGACTGGGTAAGATGCA 59.779 57.895 0.00 0.00 33.19 3.96
5465 5526 1.090052 GGCGACTGGGTAAGATGCAC 61.090 60.000 0.00 0.00 33.19 4.57
5481 5542 6.336842 AGATGCACTCTTTATTTTTGCACT 57.663 33.333 0.00 0.00 45.45 4.40
5550 5611 2.973694 TAAGCTACAGGCCTAAACCG 57.026 50.000 3.98 0.00 43.05 4.44
5723 5792 2.881513 TGTTTGTTCGATGCTGCCTTTA 59.118 40.909 0.00 0.00 0.00 1.85
5801 5918 4.309099 TGTTTCTCTTGCCATTCATTTGC 58.691 39.130 0.00 0.00 0.00 3.68
5812 5929 3.367292 CCATTCATTTGCCCAGTGTGTAC 60.367 47.826 0.00 0.00 0.00 2.90
5840 5957 2.352715 GCCTGTATGTTTTCCTTGCACC 60.353 50.000 0.00 0.00 0.00 5.01
5843 5960 2.890311 TGTATGTTTTCCTTGCACCTGG 59.110 45.455 0.00 0.00 0.00 4.45
5880 5998 4.959596 TTTGTACGCCAACAAACTACAA 57.040 36.364 7.06 0.00 42.78 2.41
5883 6001 3.940221 TGTACGCCAACAAACTACAACTT 59.060 39.130 0.00 0.00 0.00 2.66
5884 6002 3.685836 ACGCCAACAAACTACAACTTC 57.314 42.857 0.00 0.00 0.00 3.01
5885 6003 3.275999 ACGCCAACAAACTACAACTTCT 58.724 40.909 0.00 0.00 0.00 2.85
5886 6004 3.064820 ACGCCAACAAACTACAACTTCTG 59.935 43.478 0.00 0.00 0.00 3.02
5887 6005 3.064820 CGCCAACAAACTACAACTTCTGT 59.935 43.478 0.00 0.00 42.47 3.41
5903 6038 9.846248 ACAACTTCTGTATGATTCTTTTTATGC 57.154 29.630 0.00 0.00 36.10 3.14
5904 6039 9.844790 CAACTTCTGTATGATTCTTTTTATGCA 57.155 29.630 0.00 0.00 0.00 3.96
5912 6049 9.793252 GTATGATTCTTTTTATGCAATGACTGT 57.207 29.630 0.00 0.00 0.00 3.55
5915 6052 5.295431 TCTTTTTATGCAATGACTGTCGG 57.705 39.130 2.98 0.00 0.00 4.79
5920 7434 2.760634 TGCAATGACTGTCGGTGTAT 57.239 45.000 2.98 0.00 0.00 2.29
5926 7440 1.548719 TGACTGTCGGTGTATTCCCTG 59.451 52.381 2.98 0.00 0.00 4.45
5934 7448 2.680805 CGGTGTATTCCCTGCATTGTCT 60.681 50.000 0.00 0.00 0.00 3.41
5946 7460 1.987770 GCATTGTCTTTGATGTTGGCG 59.012 47.619 0.00 0.00 0.00 5.69
5959 7473 3.414549 TGTTGGCGTTCTGTTTCTTTC 57.585 42.857 0.00 0.00 0.00 2.62
5960 7474 3.013921 TGTTGGCGTTCTGTTTCTTTCT 58.986 40.909 0.00 0.00 0.00 2.52
5962 7476 4.082463 TGTTGGCGTTCTGTTTCTTTCTTT 60.082 37.500 0.00 0.00 0.00 2.52
5963 7477 5.124138 TGTTGGCGTTCTGTTTCTTTCTTTA 59.876 36.000 0.00 0.00 0.00 1.85
5972 7486 8.786028 GTTCTGTTTCTTTCTTTAAACGAACTG 58.214 33.333 17.80 0.00 40.65 3.16
5975 7489 6.964934 TGTTTCTTTCTTTAAACGAACTGAGC 59.035 34.615 0.00 0.00 38.21 4.26
5976 7490 5.668558 TCTTTCTTTAAACGAACTGAGCC 57.331 39.130 0.00 0.00 0.00 4.70
5980 7494 1.144969 TTAAACGAACTGAGCCTGCG 58.855 50.000 0.00 0.00 0.00 5.18
5982 7496 0.320771 AAACGAACTGAGCCTGCGAT 60.321 50.000 0.00 0.00 0.00 4.58
5989 7503 1.202510 ACTGAGCCTGCGATCTGATTC 60.203 52.381 0.00 0.00 0.00 2.52
5995 7509 2.287373 GCCTGCGATCTGATTCTGAAAG 59.713 50.000 0.00 0.00 0.00 2.62
5997 7511 4.378774 CCTGCGATCTGATTCTGAAAGAT 58.621 43.478 4.65 4.65 46.36 2.40
5998 7512 4.211584 CCTGCGATCTGATTCTGAAAGATG 59.788 45.833 8.85 4.26 46.36 2.90
5999 7513 4.124970 TGCGATCTGATTCTGAAAGATGG 58.875 43.478 8.85 8.80 46.36 3.51
6002 7531 5.931146 GCGATCTGATTCTGAAAGATGGTAT 59.069 40.000 8.85 0.00 46.36 2.73
6004 7533 7.600375 GCGATCTGATTCTGAAAGATGGTATTA 59.400 37.037 8.85 0.00 46.36 0.98
6018 7547 3.116959 TGGTATTACCTCCGTCCCAAAT 58.883 45.455 13.90 0.00 39.58 2.32
6020 7549 4.720773 TGGTATTACCTCCGTCCCAAATTA 59.279 41.667 13.90 0.00 39.58 1.40
6021 7550 5.191323 TGGTATTACCTCCGTCCCAAATTAA 59.809 40.000 13.90 0.00 39.58 1.40
6025 7554 2.758423 ACCTCCGTCCCAAATTAATTGC 59.242 45.455 0.39 0.00 37.73 3.56
6029 7558 4.601084 TCCGTCCCAAATTAATTGCCTTA 58.399 39.130 0.39 0.00 37.73 2.69
6037 7566 8.601546 TCCCAAATTAATTGCCTTAGATTTGTT 58.398 29.630 0.39 0.00 37.73 2.83
6065 7595 9.469097 AGTATGGATGTATCTAATACCTGAGAC 57.531 37.037 11.31 0.00 34.86 3.36
6066 7596 9.469097 GTATGGATGTATCTAATACCTGAGACT 57.531 37.037 0.00 0.00 34.86 3.24
6069 7599 9.877222 TGGATGTATCTAATACCTGAGACTAAA 57.123 33.333 0.00 0.00 34.86 1.85
6073 7603 9.182214 TGTATCTAATACCTGAGACTAAAACGT 57.818 33.333 0.00 0.00 34.86 3.99
6074 7604 9.448294 GTATCTAATACCTGAGACTAAAACGTG 57.552 37.037 0.00 0.00 0.00 4.49
6075 7605 7.458409 TCTAATACCTGAGACTAAAACGTGT 57.542 36.000 0.00 0.00 0.00 4.49
6078 7608 7.458409 AATACCTGAGACTAAAACGTGTCTA 57.542 36.000 6.28 0.00 42.79 2.59
6079 7609 5.373981 ACCTGAGACTAAAACGTGTCTAG 57.626 43.478 6.28 2.38 42.79 2.43
6080 7610 5.068636 ACCTGAGACTAAAACGTGTCTAGA 58.931 41.667 6.28 0.00 42.79 2.43
6081 7611 5.711036 ACCTGAGACTAAAACGTGTCTAGAT 59.289 40.000 6.28 0.00 42.79 1.98
6082 7612 6.883217 ACCTGAGACTAAAACGTGTCTAGATA 59.117 38.462 6.28 0.00 42.79 1.98
6083 7613 7.556996 ACCTGAGACTAAAACGTGTCTAGATAT 59.443 37.037 6.28 0.00 42.79 1.63
6084 7614 9.053840 CCTGAGACTAAAACGTGTCTAGATATA 57.946 37.037 6.28 0.00 42.79 0.86
6088 7618 8.719648 AGACTAAAACGTGTCTAGATATATCCG 58.280 37.037 9.18 7.11 41.19 4.18
6094 7624 9.881649 AAACGTGTCTAGATATATCCGTATCTA 57.118 33.333 9.18 4.21 40.79 1.98
6123 7653 4.607239 TCTAGGACAACTAATTCGGGACT 58.393 43.478 0.00 0.00 0.00 3.85
6129 7659 3.056035 ACAACTAATTCGGGACTGAGGAC 60.056 47.826 0.00 0.00 0.00 3.85
6131 7661 1.067212 CTAATTCGGGACTGAGGACGG 59.933 57.143 0.00 0.00 0.00 4.79
6133 7663 1.038130 ATTCGGGACTGAGGACGGAG 61.038 60.000 0.00 0.00 0.00 4.63
6134 7664 3.141488 CGGGACTGAGGACGGAGG 61.141 72.222 0.00 0.00 0.00 4.30
6135 7665 2.760385 GGGACTGAGGACGGAGGG 60.760 72.222 0.00 0.00 0.00 4.30
6136 7666 2.359404 GGACTGAGGACGGAGGGA 59.641 66.667 0.00 0.00 0.00 4.20
6137 7667 1.755008 GGACTGAGGACGGAGGGAG 60.755 68.421 0.00 0.00 0.00 4.30
6138 7668 1.000646 GACTGAGGACGGAGGGAGT 60.001 63.158 0.00 0.00 0.00 3.85
6171 7701 2.604914 CACATCGTATCTGAGTTGCACC 59.395 50.000 0.00 0.00 0.00 5.01
6264 7794 3.906846 AGACAGAAATGGAAGGTCAGACT 59.093 43.478 0.00 0.00 0.00 3.24
6292 7822 5.008415 AGAGACATGAACAAGAAACAAGCAG 59.992 40.000 0.00 0.00 0.00 4.24
6306 7836 3.857854 GCAGACACATGGAGCGCG 61.858 66.667 0.00 0.00 0.00 6.86
6308 7838 3.381983 AGACACATGGAGCGCGGA 61.382 61.111 8.83 0.00 0.00 5.54
6309 7839 2.887568 GACACATGGAGCGCGGAG 60.888 66.667 8.83 0.00 0.00 4.63
6311 7841 2.107750 CACATGGAGCGCGGAGAT 59.892 61.111 8.83 0.00 0.00 2.75
6322 7852 4.147449 CGGAGATGGTGCGAGGCA 62.147 66.667 0.00 0.00 44.08 4.75
6327 7857 0.254178 AGATGGTGCGAGGCAATTCT 59.746 50.000 0.00 0.00 41.47 2.40
6411 7941 2.672996 GGCGTCACCTGCACCAAT 60.673 61.111 0.00 0.00 34.51 3.16
6437 7967 2.179517 GACGAGAGCTCCACCGTG 59.820 66.667 24.57 6.95 35.22 4.94
6491 8023 1.211212 CAAGGGCAGAGTGATGGATGA 59.789 52.381 0.00 0.00 0.00 2.92
6651 8183 2.283676 TTCTCCGACGCCTTCCCT 60.284 61.111 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.053116 GCCATAACGCACGCATCG 60.053 61.111 0.00 0.00 0.00 3.84
18 19 3.181774 GCTAGTGTTACATCGCCATAACG 59.818 47.826 0.00 0.00 34.60 3.18
41 42 1.153568 CGCCTAAGTAGCAGCAGCA 60.154 57.895 3.17 0.00 45.49 4.41
43 44 0.108138 AACCGCCTAAGTAGCAGCAG 60.108 55.000 0.00 0.00 0.00 4.24
48 49 1.818363 GCCCAACCGCCTAAGTAGC 60.818 63.158 0.00 0.00 0.00 3.58
69 70 1.213296 GGAAGAGAGGCCATTGGGTA 58.787 55.000 5.01 0.00 36.17 3.69
82 83 3.194329 GCCATGGGAAAAGAAAGGAAGAG 59.806 47.826 15.13 0.00 0.00 2.85
109 110 2.124411 GGTATCTTGAAGTAGGCCCCA 58.876 52.381 0.00 0.00 0.00 4.96
110 111 2.409570 AGGTATCTTGAAGTAGGCCCC 58.590 52.381 0.00 0.00 0.00 5.80
111 112 5.071923 ACATTAGGTATCTTGAAGTAGGCCC 59.928 44.000 0.00 0.00 0.00 5.80
126 127 7.436970 CACGTATGCAATTCTGTACATTAGGTA 59.563 37.037 0.00 0.00 0.00 3.08
139 140 0.751643 AGCCCCCACGTATGCAATTC 60.752 55.000 0.00 0.00 0.00 2.17
210 211 1.270094 CGGCAATAATAGAGACCGGCA 60.270 52.381 0.00 0.00 37.04 5.69
211 212 1.270147 ACGGCAATAATAGAGACCGGC 60.270 52.381 0.00 0.00 44.73 6.13
213 214 2.794910 CACACGGCAATAATAGAGACCG 59.205 50.000 0.00 0.00 45.86 4.79
214 215 3.131396 CCACACGGCAATAATAGAGACC 58.869 50.000 0.00 0.00 0.00 3.85
216 217 3.490249 CGTCCACACGGCAATAATAGAGA 60.490 47.826 0.00 0.00 42.73 3.10
217 218 2.794910 CGTCCACACGGCAATAATAGAG 59.205 50.000 0.00 0.00 42.73 2.43
218 219 2.816689 CGTCCACACGGCAATAATAGA 58.183 47.619 0.00 0.00 42.73 1.98
234 235 2.413453 GACAAGATTGCAAGAGACGTCC 59.587 50.000 13.01 3.77 0.00 4.79
240 241 3.611057 GCCAACAGACAAGATTGCAAGAG 60.611 47.826 4.94 0.00 0.00 2.85
247 248 0.537143 TGGCGCCAACAGACAAGATT 60.537 50.000 30.74 0.00 0.00 2.40
248 249 0.537143 TTGGCGCCAACAGACAAGAT 60.537 50.000 37.30 0.00 30.57 2.40
256 257 4.038162 AGTTATAACTTTTTGGCGCCAACA 59.962 37.500 40.36 32.09 35.21 3.33
303 305 1.669502 GCAACGGCATGAAAATCAGCA 60.670 47.619 0.00 0.00 40.72 4.41
307 309 4.671377 TCATTAGCAACGGCATGAAAATC 58.329 39.130 0.00 0.00 44.61 2.17
315 317 3.373748 CAGTACATTCATTAGCAACGGCA 59.626 43.478 0.00 0.00 44.61 5.69
352 354 8.286800 TCCCGCGTAGATTTATAATTTTTCATG 58.713 33.333 4.92 0.00 0.00 3.07
360 362 5.217978 TGGTTCCCGCGTAGATTTATAAT 57.782 39.130 4.92 0.00 0.00 1.28
368 370 0.390603 CATGTTGGTTCCCGCGTAGA 60.391 55.000 4.92 0.00 0.00 2.59
369 371 1.977594 GCATGTTGGTTCCCGCGTAG 61.978 60.000 4.92 0.00 0.00 3.51
391 395 8.819643 AGTTAAGAGTGATTGTCAAACTAGTC 57.180 34.615 0.00 0.00 0.00 2.59
397 401 9.990360 TGTGTATAGTTAAGAGTGATTGTCAAA 57.010 29.630 0.00 0.00 0.00 2.69
406 410 8.186163 TGTATTCGGTGTGTATAGTTAAGAGTG 58.814 37.037 0.00 0.00 0.00 3.51
505 512 1.202143 CGCCGAAAGTTAAAGGCCATC 60.202 52.381 5.01 0.00 46.36 3.51
506 513 0.808755 CGCCGAAAGTTAAAGGCCAT 59.191 50.000 5.01 0.00 46.36 4.40
622 630 8.000709 AGCATGACCTAATCAATCAGGAAATAA 58.999 33.333 0.00 0.00 41.93 1.40
671 679 7.339721 ACTCCTATATGGTATTGTGATCTACGG 59.660 40.741 0.00 0.00 37.07 4.02
672 680 8.282455 ACTCCTATATGGTATTGTGATCTACG 57.718 38.462 0.00 0.00 37.07 3.51
714 723 6.742718 CGCAAAACAAGATGAAAGTACCATAG 59.257 38.462 0.00 0.00 0.00 2.23
716 725 5.240623 TCGCAAAACAAGATGAAAGTACCAT 59.759 36.000 0.00 0.00 0.00 3.55
739 748 3.123804 ACTCGATCATGCACCGTAATTC 58.876 45.455 0.00 0.00 0.00 2.17
746 755 2.138320 CCACATACTCGATCATGCACC 58.862 52.381 0.00 0.00 0.00 5.01
756 765 6.475727 CCTGAAATTACAGTACCACATACTCG 59.524 42.308 0.00 0.00 42.62 4.18
778 795 1.442769 CGGCGATGGATAATTCCCTG 58.557 55.000 0.00 0.00 41.83 4.45
779 796 0.321653 GCGGCGATGGATAATTCCCT 60.322 55.000 12.98 0.00 41.83 4.20
792 809 2.857575 ATTGTGAGATGCTGCGGCGA 62.858 55.000 12.98 2.26 42.25 5.54
793 810 2.370824 GATTGTGAGATGCTGCGGCG 62.371 60.000 13.96 0.51 42.25 6.46
821 838 1.503542 CTGTGGCGACAGGAAATGC 59.496 57.895 20.15 0.00 45.26 3.56
822 839 1.879380 TTTCTGTGGCGACAGGAAATG 59.121 47.619 26.06 3.23 43.61 2.32
1295 1317 1.524355 CATAAACAGCAGATCGAGGCG 59.476 52.381 0.00 0.00 34.54 5.52
1299 1321 3.190079 GCAGACATAAACAGCAGATCGA 58.810 45.455 0.00 0.00 0.00 3.59
1378 1400 2.384391 GATCAGCCATTTCCGCGCAG 62.384 60.000 8.75 0.00 0.00 5.18
1422 1444 6.856757 ACGAAACCCTATATCTCCTAACCTA 58.143 40.000 0.00 0.00 0.00 3.08
1427 1449 6.150641 CGATCAACGAAACCCTATATCTCCTA 59.849 42.308 0.00 0.00 45.77 2.94
1456 1478 0.837691 AGTGACATCAGCCCCAGACA 60.838 55.000 0.00 0.00 0.00 3.41
1500 1522 0.233074 CATTGTACTATGCCGCAGCG 59.767 55.000 8.18 8.18 44.31 5.18
1547 1569 6.090763 TCAGTGATGTAAGAATTGCAGTTACG 59.909 38.462 0.00 0.00 45.78 3.18
1782 1805 0.673644 CCGGACTCAAAGCCAACGAT 60.674 55.000 0.00 0.00 0.00 3.73
1815 1839 1.090052 AGCTAATCAGGCGCGAAACC 61.090 55.000 12.10 0.26 34.52 3.27
1831 1855 4.151883 TGCAAGGTGGAAGAATAAAAGCT 58.848 39.130 0.00 0.00 0.00 3.74
1929 1953 9.143631 CCTGTCAAAAATGGAATGATAAAAGAC 57.856 33.333 0.00 0.00 0.00 3.01
1931 1955 7.064966 GGCCTGTCAAAAATGGAATGATAAAAG 59.935 37.037 0.00 0.00 0.00 2.27
1934 1958 5.721000 AGGCCTGTCAAAAATGGAATGATAA 59.279 36.000 3.11 0.00 0.00 1.75
1936 1960 4.081309 CAGGCCTGTCAAAAATGGAATGAT 60.081 41.667 25.53 0.00 0.00 2.45
1937 1961 3.258872 CAGGCCTGTCAAAAATGGAATGA 59.741 43.478 25.53 0.00 0.00 2.57
1938 1962 3.592059 CAGGCCTGTCAAAAATGGAATG 58.408 45.455 25.53 0.00 0.00 2.67
1949 1973 2.603473 ACTACGCCAGGCCTGTCA 60.603 61.111 30.63 11.79 0.00 3.58
2028 2052 0.539669 AAGCCTTACCCCTGCACAAC 60.540 55.000 0.00 0.00 0.00 3.32
2029 2053 0.539438 CAAGCCTTACCCCTGCACAA 60.539 55.000 0.00 0.00 0.00 3.33
2187 2212 1.388547 AAAGAAACAGCACCGAAGCA 58.611 45.000 2.02 0.00 36.85 3.91
2376 2401 5.496556 TCCGCATTGGAATCTCTAAAAAGA 58.503 37.500 0.00 0.00 46.38 2.52
2395 2420 3.293311 TTTGCTCCGTATATAGTCCGC 57.707 47.619 0.00 0.00 0.00 5.54
2396 2421 5.466819 TCATTTTGCTCCGTATATAGTCCG 58.533 41.667 0.00 0.00 0.00 4.79
2403 2428 6.582636 AGATTCACTCATTTTGCTCCGTATA 58.417 36.000 0.00 0.00 0.00 1.47
2405 2430 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2446 2471 9.463902 GGGAGTATATAGCATACGGATGTATAT 57.536 37.037 9.90 15.71 39.28 0.86
2447 2472 8.666821 AGGGAGTATATAGCATACGGATGTATA 58.333 37.037 9.90 10.25 39.28 1.47
2448 2473 7.527796 AGGGAGTATATAGCATACGGATGTAT 58.472 38.462 9.90 8.45 42.03 2.29
2449 2474 6.907961 AGGGAGTATATAGCATACGGATGTA 58.092 40.000 9.90 0.98 35.30 2.29
2450 2475 5.767670 AGGGAGTATATAGCATACGGATGT 58.232 41.667 9.90 0.00 35.30 3.06
2451 2476 5.241949 GGAGGGAGTATATAGCATACGGATG 59.758 48.000 2.22 2.22 36.02 3.51
2452 2477 5.386924 GGAGGGAGTATATAGCATACGGAT 58.613 45.833 0.00 0.00 0.00 4.18
2453 2478 4.685302 CGGAGGGAGTATATAGCATACGGA 60.685 50.000 0.00 0.00 0.00 4.69
2454 2479 3.564644 CGGAGGGAGTATATAGCATACGG 59.435 52.174 0.00 0.00 0.00 4.02
2455 2480 4.197750 ACGGAGGGAGTATATAGCATACG 58.802 47.826 0.00 0.00 0.00 3.06
2456 2481 4.579753 GGACGGAGGGAGTATATAGCATAC 59.420 50.000 0.00 0.00 0.00 2.39
2457 2482 4.386088 GGGACGGAGGGAGTATATAGCATA 60.386 50.000 0.00 0.00 0.00 3.14
2458 2483 3.627747 GGGACGGAGGGAGTATATAGCAT 60.628 52.174 0.00 0.00 0.00 3.79
2459 2484 2.291411 GGGACGGAGGGAGTATATAGCA 60.291 54.545 0.00 0.00 0.00 3.49
2460 2485 2.291411 TGGGACGGAGGGAGTATATAGC 60.291 54.545 0.00 0.00 0.00 2.97
2489 2514 8.548721 CATCCGTATTTACACAAATCTAAGACC 58.451 37.037 0.00 0.00 35.88 3.85
2495 2520 9.607988 TTGATACATCCGTATTTACACAAATCT 57.392 29.630 0.00 0.00 38.48 2.40
2503 2528 7.997107 TGTGACTTGATACATCCGTATTTAC 57.003 36.000 0.00 0.00 38.48 2.01
2557 2582 9.289303 CGTCCCAAAATTCTTGTCTTATATTTG 57.711 33.333 0.00 0.00 0.00 2.32
2558 2583 8.466798 CCGTCCCAAAATTCTTGTCTTATATTT 58.533 33.333 0.00 0.00 0.00 1.40
2559 2584 7.832187 TCCGTCCCAAAATTCTTGTCTTATATT 59.168 33.333 0.00 0.00 0.00 1.28
2562 2587 5.566469 TCCGTCCCAAAATTCTTGTCTTAT 58.434 37.500 0.00 0.00 0.00 1.73
2571 2596 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2588 2613 7.684937 ATAAGGACTACATACGGATGTACTC 57.315 40.000 16.71 15.95 44.77 2.59
2623 2648 8.422566 CCTCCGTTCCTAAATATAAGTCTCTTT 58.577 37.037 0.00 0.00 0.00 2.52
2626 2651 6.492772 TCCCTCCGTTCCTAAATATAAGTCTC 59.507 42.308 0.00 0.00 0.00 3.36
2627 2652 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2629 2654 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2631 2656 8.731591 ATTACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
2636 2661 4.897670 CCTATTACTCCCTCCGTTCCTAAA 59.102 45.833 0.00 0.00 0.00 1.85
2641 2666 3.029570 ACACCTATTACTCCCTCCGTTC 58.970 50.000 0.00 0.00 0.00 3.95
2777 2808 4.530161 CCCCAACAAAATCCTGATTTGGTA 59.470 41.667 11.95 0.00 42.46 3.25
2778 2809 3.327464 CCCCAACAAAATCCTGATTTGGT 59.673 43.478 6.79 6.79 44.50 3.67
2955 2992 1.402194 GCACTCTTCCTCAGTCACTCG 60.402 57.143 0.00 0.00 0.00 4.18
3024 3061 3.002348 GCCGAAAACTTCATAATCCCGAG 59.998 47.826 0.00 0.00 0.00 4.63
3045 3082 9.722056 CTCATGTGAACCTAATAAATAAGTTGC 57.278 33.333 0.00 0.00 0.00 4.17
3073 3110 9.495572 CTAGGCCTTTTAAGAGTATTCCTATTG 57.504 37.037 12.58 0.00 0.00 1.90
3148 3185 8.681806 CATGTGTGGGTTGACAAATATGTAATA 58.318 33.333 0.00 0.00 40.74 0.98
3193 3230 8.934825 CATAAGTAAATGTTTCACCCAAAATGG 58.065 33.333 0.00 0.00 37.25 3.16
3220 3257 2.807967 TCACAAGACAATTCAGGCGAAG 59.192 45.455 0.00 0.00 33.74 3.79
3223 3260 3.837213 AATCACAAGACAATTCAGGCG 57.163 42.857 0.00 0.00 0.00 5.52
3353 3390 5.974158 TGAACCAAAACAACGAATACACATG 59.026 36.000 0.00 0.00 0.00 3.21
3363 3400 3.379240 TGCATCATGAACCAAAACAACG 58.621 40.909 0.00 0.00 0.00 4.10
3562 3599 1.367471 GGGCTTTTGGTGTTGGAGC 59.633 57.895 0.00 0.00 0.00 4.70
3563 3600 0.758685 TGGGGCTTTTGGTGTTGGAG 60.759 55.000 0.00 0.00 0.00 3.86
3564 3601 0.758685 CTGGGGCTTTTGGTGTTGGA 60.759 55.000 0.00 0.00 0.00 3.53
3565 3602 1.747774 CTGGGGCTTTTGGTGTTGG 59.252 57.895 0.00 0.00 0.00 3.77
3566 3603 1.069596 GCTGGGGCTTTTGGTGTTG 59.930 57.895 0.00 0.00 35.22 3.33
3567 3604 2.498056 CGCTGGGGCTTTTGGTGTT 61.498 57.895 0.00 0.00 36.09 3.32
3568 3605 2.912025 CGCTGGGGCTTTTGGTGT 60.912 61.111 0.00 0.00 36.09 4.16
3569 3606 3.683937 CCGCTGGGGCTTTTGGTG 61.684 66.667 0.00 0.00 36.09 4.17
3794 3846 8.630054 TCGCAGCCCTGTAAAAATAATAATAT 57.370 30.769 0.00 0.00 0.00 1.28
3945 3997 3.152341 CATCTGAAGCTCCAGTTTTGGT 58.848 45.455 0.00 0.00 45.26 3.67
4337 4394 4.586884 TCTGGTTAGTACGAGATGAGTGT 58.413 43.478 0.00 0.00 34.65 3.55
4712 4769 5.537674 GGACAGAATCCTTGCATCCATAAAT 59.462 40.000 0.00 0.00 45.22 1.40
4714 4771 4.464008 GGACAGAATCCTTGCATCCATAA 58.536 43.478 0.00 0.00 45.22 1.90
4716 4773 2.941480 GGACAGAATCCTTGCATCCAT 58.059 47.619 0.00 0.00 45.22 3.41
4732 4789 5.280317 GGGAGTACCATTTACTTGAAGGACA 60.280 44.000 0.00 0.00 39.85 4.02
5025 5083 1.734465 CTGACGCCTCAGAATGGTTTC 59.266 52.381 6.87 0.00 46.32 2.78
5076 5134 3.084039 ACCCTCGGCATATGCAATATTG 58.916 45.455 28.07 11.27 37.44 1.90
5223 5281 4.153958 TGACCATCATACAAACAAACGC 57.846 40.909 0.00 0.00 0.00 4.84
5464 5525 6.449635 TCACACAGTGCAAAAATAAAGAGT 57.550 33.333 0.00 0.00 32.98 3.24
5465 5526 7.935338 ATTCACACAGTGCAAAAATAAAGAG 57.065 32.000 0.00 0.00 32.98 2.85
5481 5542 5.808366 AGTACAGAAGAGGAATTCACACA 57.192 39.130 7.93 0.00 0.00 3.72
5691 5758 2.229062 TCGAACAAACAAACAGCCACAA 59.771 40.909 0.00 0.00 0.00 3.33
5801 5918 2.047274 CAGGCCGTACACACTGGG 60.047 66.667 0.00 0.00 0.00 4.45
5855 5973 7.204496 TGTAGTTTGTTGGCGTACAAATAAT 57.796 32.000 17.13 10.96 46.29 1.28
5885 6003 9.791820 CAGTCATTGCATAAAAAGAATCATACA 57.208 29.630 0.00 0.00 0.00 2.29
5886 6004 9.793252 ACAGTCATTGCATAAAAAGAATCATAC 57.207 29.630 0.00 0.00 0.00 2.39
5903 6038 2.936498 GGGAATACACCGACAGTCATTG 59.064 50.000 0.41 0.00 0.00 2.82
5904 6039 2.838202 AGGGAATACACCGACAGTCATT 59.162 45.455 0.41 0.00 0.00 2.57
5909 6046 0.249120 TGCAGGGAATACACCGACAG 59.751 55.000 0.00 0.00 0.00 3.51
5912 6049 1.280710 ACAATGCAGGGAATACACCGA 59.719 47.619 0.00 0.00 0.00 4.69
5915 6052 4.458989 TCAAAGACAATGCAGGGAATACAC 59.541 41.667 0.00 0.00 0.00 2.90
5920 7434 3.499338 ACATCAAAGACAATGCAGGGAA 58.501 40.909 0.00 0.00 0.00 3.97
5926 7440 1.987770 CGCCAACATCAAAGACAATGC 59.012 47.619 0.00 0.00 0.00 3.56
5934 7448 3.380004 AGAAACAGAACGCCAACATCAAA 59.620 39.130 0.00 0.00 0.00 2.69
5946 7460 8.786028 CAGTTCGTTTAAAGAAAGAAACAGAAC 58.214 33.333 17.44 17.44 42.01 3.01
5959 7473 2.411547 CGCAGGCTCAGTTCGTTTAAAG 60.412 50.000 0.00 0.00 0.00 1.85
5960 7474 1.529438 CGCAGGCTCAGTTCGTTTAAA 59.471 47.619 0.00 0.00 0.00 1.52
5962 7476 0.315886 TCGCAGGCTCAGTTCGTTTA 59.684 50.000 0.00 0.00 0.00 2.01
5963 7477 0.320771 ATCGCAGGCTCAGTTCGTTT 60.321 50.000 0.00 0.00 0.00 3.60
5972 7486 1.068281 TCAGAATCAGATCGCAGGCTC 59.932 52.381 0.00 0.00 0.00 4.70
5975 7489 3.790091 TCTTTCAGAATCAGATCGCAGG 58.210 45.455 0.00 0.00 0.00 4.85
5976 7490 4.211584 CCATCTTTCAGAATCAGATCGCAG 59.788 45.833 0.00 0.00 0.00 5.18
5980 7494 9.213799 GGTAATACCATCTTTCAGAATCAGATC 57.786 37.037 4.24 0.00 38.42 2.75
5982 7496 8.324191 AGGTAATACCATCTTTCAGAATCAGA 57.676 34.615 12.54 0.00 41.95 3.27
5989 7503 5.277857 ACGGAGGTAATACCATCTTTCAG 57.722 43.478 12.54 3.51 41.95 3.02
5995 7509 2.322658 TGGGACGGAGGTAATACCATC 58.677 52.381 12.54 6.32 41.95 3.51
5997 7511 2.250921 TTGGGACGGAGGTAATACCA 57.749 50.000 12.54 0.00 41.95 3.25
5998 7512 3.851458 ATTTGGGACGGAGGTAATACC 57.149 47.619 0.07 0.07 38.99 2.73
5999 7513 7.645402 CAATTAATTTGGGACGGAGGTAATAC 58.355 38.462 0.00 0.00 0.00 1.89
6002 7531 4.399934 GCAATTAATTTGGGACGGAGGTAA 59.600 41.667 0.00 0.00 35.75 2.85
6004 7533 2.758423 GCAATTAATTTGGGACGGAGGT 59.242 45.455 0.00 0.00 35.75 3.85
6020 7549 9.474313 TCCATACTAAACAAATCTAAGGCAATT 57.526 29.630 0.00 0.00 0.00 2.32
6021 7550 9.646522 ATCCATACTAAACAAATCTAAGGCAAT 57.353 29.630 0.00 0.00 0.00 3.56
6040 7569 9.469097 AGTCTCAGGTATTAGATACATCCATAC 57.531 37.037 1.06 2.52 37.48 2.39
6043 7573 9.877222 TTTAGTCTCAGGTATTAGATACATCCA 57.123 33.333 1.06 0.00 37.48 3.41
6055 7585 5.979288 AGACACGTTTTAGTCTCAGGTAT 57.021 39.130 0.68 0.00 40.96 2.73
6057 7587 5.068636 TCTAGACACGTTTTAGTCTCAGGT 58.931 41.667 9.32 0.00 43.59 4.00
6058 7588 5.624344 TCTAGACACGTTTTAGTCTCAGG 57.376 43.478 9.32 3.27 43.59 3.86
6062 7592 8.719648 CGGATATATCTAGACACGTTTTAGTCT 58.280 37.037 12.42 10.66 46.19 3.24
6063 7593 8.502387 ACGGATATATCTAGACACGTTTTAGTC 58.498 37.037 12.42 0.00 35.02 2.59
6064 7594 8.388484 ACGGATATATCTAGACACGTTTTAGT 57.612 34.615 12.42 0.00 0.00 2.24
6067 7597 9.228949 AGATACGGATATATCTAGACACGTTTT 57.771 33.333 14.69 6.38 39.63 2.43
6068 7598 8.789825 AGATACGGATATATCTAGACACGTTT 57.210 34.615 14.69 9.16 39.63 3.60
6082 7612 9.398538 GTCCTAGATTTGTCTAGATACGGATAT 57.601 37.037 12.74 0.00 41.56 1.63
6083 7613 8.380867 TGTCCTAGATTTGTCTAGATACGGATA 58.619 37.037 12.74 0.25 41.56 2.59
6084 7614 7.232188 TGTCCTAGATTTGTCTAGATACGGAT 58.768 38.462 12.74 0.00 41.56 4.18
6085 7615 6.598503 TGTCCTAGATTTGTCTAGATACGGA 58.401 40.000 12.74 1.34 41.56 4.69
6086 7616 6.879276 TGTCCTAGATTTGTCTAGATACGG 57.121 41.667 12.74 0.00 41.56 4.02
6087 7617 7.932335 AGTTGTCCTAGATTTGTCTAGATACG 58.068 38.462 12.74 0.00 41.56 3.06
6094 7624 7.042335 CCGAATTAGTTGTCCTAGATTTGTCT 58.958 38.462 0.00 0.00 0.00 3.41
6097 7627 6.258068 GTCCCGAATTAGTTGTCCTAGATTTG 59.742 42.308 0.00 0.00 0.00 2.32
6098 7628 6.156429 AGTCCCGAATTAGTTGTCCTAGATTT 59.844 38.462 0.00 0.00 0.00 2.17
6099 7629 5.661759 AGTCCCGAATTAGTTGTCCTAGATT 59.338 40.000 0.00 0.00 0.00 2.40
6105 7635 3.522553 CTCAGTCCCGAATTAGTTGTCC 58.477 50.000 0.00 0.00 0.00 4.02
6111 7641 1.067212 CCGTCCTCAGTCCCGAATTAG 59.933 57.143 0.00 0.00 0.00 1.73
6112 7642 1.108776 CCGTCCTCAGTCCCGAATTA 58.891 55.000 0.00 0.00 0.00 1.40
6114 7644 1.000019 TCCGTCCTCAGTCCCGAAT 60.000 57.895 0.00 0.00 0.00 3.34
6117 7647 3.141488 CCTCCGTCCTCAGTCCCG 61.141 72.222 0.00 0.00 0.00 5.14
6123 7653 5.531753 AATATATACTCCCTCCGTCCTCA 57.468 43.478 0.00 0.00 0.00 3.86
6129 7659 6.755206 TGTGAACAAATATATACTCCCTCCG 58.245 40.000 0.00 0.00 0.00 4.63
6131 7661 8.088981 ACGATGTGAACAAATATATACTCCCTC 58.911 37.037 0.00 0.00 0.00 4.30
6133 7663 9.871238 ATACGATGTGAACAAATATATACTCCC 57.129 33.333 0.00 0.00 0.00 4.30
6264 7794 5.610398 TGTTTCTTGTTCATGTCTCTGCTA 58.390 37.500 0.00 0.00 0.00 3.49
6292 7822 2.635229 ATCTCCGCGCTCCATGTGTC 62.635 60.000 5.56 0.00 0.00 3.67
6306 7836 0.749454 AATTGCCTCGCACCATCTCC 60.749 55.000 0.00 0.00 38.71 3.71
6308 7838 0.254178 AGAATTGCCTCGCACCATCT 59.746 50.000 0.00 0.00 38.71 2.90
6309 7839 0.379669 CAGAATTGCCTCGCACCATC 59.620 55.000 0.00 0.00 38.71 3.51
6311 7841 2.334946 GCAGAATTGCCTCGCACCA 61.335 57.895 0.00 0.00 44.74 4.17
6322 7852 2.766313 TGTTCGTAGTGCTGCAGAATT 58.234 42.857 20.43 6.38 0.00 2.17
6327 7857 1.428448 GTCATGTTCGTAGTGCTGCA 58.572 50.000 0.00 0.00 0.00 4.41
6411 7941 1.292061 GAGCTCTCGTCTCGCTTCTA 58.708 55.000 6.43 0.00 33.47 2.10
6437 7967 4.964555 GCTTTCGAAGTTTCTTGTGAACTC 59.035 41.667 0.00 0.00 31.02 3.01
6627 8159 1.186267 AGGCGTCGGAGAAGTCCTTT 61.186 55.000 0.00 0.00 42.76 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.