Multiple sequence alignment - TraesCS4D01G052400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G052400 chr4D 100.000 5586 0 0 1 5586 28486238 28480653 0.000000e+00 10316.0
1 TraesCS4D01G052400 chr4A 92.838 2597 104 24 2073 4617 575007496 575010062 0.000000e+00 3690.0
2 TraesCS4D01G052400 chr4A 83.714 700 55 28 1008 1663 575006162 575006846 1.720000e-169 606.0
3 TraesCS4D01G052400 chr4A 85.294 204 22 4 1779 1976 575006917 575007118 2.640000e-48 204.0
4 TraesCS4D01G052400 chr4B 93.524 2347 91 22 2800 5097 40868950 40866616 0.000000e+00 3435.0
5 TraesCS4D01G052400 chr4B 90.746 724 45 12 2085 2803 40869735 40869029 0.000000e+00 946.0
6 TraesCS4D01G052400 chr4B 88.267 554 27 14 997 1527 40870776 40870238 3.670000e-176 628.0
7 TraesCS4D01G052400 chr4B 91.916 334 13 6 5244 5575 40863733 40863412 6.600000e-124 455.0
8 TraesCS4D01G052400 chr4B 74.306 288 61 10 4244 4523 672128566 672128284 5.920000e-20 110.0
9 TraesCS4D01G052400 chr2D 94.595 999 47 5 1 994 203459630 203460626 0.000000e+00 1539.0
10 TraesCS4D01G052400 chr3D 94.200 1000 43 8 1 994 157181721 157180731 0.000000e+00 1511.0
11 TraesCS4D01G052400 chr3D 93.625 1004 53 6 1 995 275640315 275641316 0.000000e+00 1489.0
12 TraesCS4D01G052400 chr3D 93.182 1012 50 11 1 997 549233685 549232678 0.000000e+00 1469.0
13 TraesCS4D01G052400 chr7D 93.694 999 56 6 1 995 383276669 383275674 0.000000e+00 1489.0
14 TraesCS4D01G052400 chr7D 83.333 66 11 0 4290 4355 600837403 600837338 1.680000e-05 62.1
15 TraesCS4D01G052400 chr6D 93.433 1005 54 6 1 995 134338812 134339814 0.000000e+00 1480.0
16 TraesCS4D01G052400 chr6D 93.407 1001 54 8 1 994 432850513 432851508 0.000000e+00 1472.0
17 TraesCS4D01G052400 chr1D 93.261 1009 58 9 1 1005 474370837 474369835 0.000000e+00 1478.0
18 TraesCS4D01G052400 chr1D 93.141 1006 52 7 1 994 463260519 463259519 0.000000e+00 1459.0
19 TraesCS4D01G052400 chr5A 75.433 289 56 12 4244 4523 658990580 658990862 5.870000e-25 126.0
20 TraesCS4D01G052400 chrUn 74.916 299 62 10 4244 4534 100090898 100091191 2.110000e-24 124.0
21 TraesCS4D01G052400 chr7B 89.796 49 5 0 4311 4359 624469108 624469060 4.670000e-06 63.9
22 TraesCS4D01G052400 chr7A 89.796 49 5 0 4311 4359 657377858 657377906 4.670000e-06 63.9
23 TraesCS4D01G052400 chr7A 82.609 69 12 0 4287 4355 692628330 692628398 1.680000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G052400 chr4D 28480653 28486238 5585 True 10316 10316 100.00000 1 5586 1 chr4D.!!$R1 5585
1 TraesCS4D01G052400 chr4A 575006162 575010062 3900 False 1500 3690 87.28200 1008 4617 3 chr4A.!!$F1 3609
2 TraesCS4D01G052400 chr4B 40863412 40870776 7364 True 1366 3435 91.11325 997 5575 4 chr4B.!!$R2 4578
3 TraesCS4D01G052400 chr2D 203459630 203460626 996 False 1539 1539 94.59500 1 994 1 chr2D.!!$F1 993
4 TraesCS4D01G052400 chr3D 157180731 157181721 990 True 1511 1511 94.20000 1 994 1 chr3D.!!$R1 993
5 TraesCS4D01G052400 chr3D 275640315 275641316 1001 False 1489 1489 93.62500 1 995 1 chr3D.!!$F1 994
6 TraesCS4D01G052400 chr3D 549232678 549233685 1007 True 1469 1469 93.18200 1 997 1 chr3D.!!$R2 996
7 TraesCS4D01G052400 chr7D 383275674 383276669 995 True 1489 1489 93.69400 1 995 1 chr7D.!!$R1 994
8 TraesCS4D01G052400 chr6D 134338812 134339814 1002 False 1480 1480 93.43300 1 995 1 chr6D.!!$F1 994
9 TraesCS4D01G052400 chr6D 432850513 432851508 995 False 1472 1472 93.40700 1 994 1 chr6D.!!$F2 993
10 TraesCS4D01G052400 chr1D 474369835 474370837 1002 True 1478 1478 93.26100 1 1005 1 chr1D.!!$R2 1004
11 TraesCS4D01G052400 chr1D 463259519 463260519 1000 True 1459 1459 93.14100 1 994 1 chr1D.!!$R1 993

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
861 908 0.774908 TCCATCCCGGACAGGTTTTT 59.225 50.0 0.73 0.00 39.64 1.94 F
1829 1953 0.034896 ACGCGATTTGAGGGTGTTCT 59.965 50.0 15.93 0.00 33.41 3.01 F
2255 2676 0.618981 ACTCCCGGTTTCAGGAATCC 59.381 55.0 0.00 0.00 0.00 3.01 F
3778 4348 0.545071 TCAGATGTCTGGACAGGGCA 60.545 55.0 9.94 0.29 45.48 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2762 3190 0.545309 CCCTGTTGAGGAGGGTGAGA 60.545 60.000 0.0 0.0 44.85 3.27 R
3374 3944 1.547372 CCACCTGGCTTTTGGAATCTG 59.453 52.381 0.0 0.0 31.39 2.90 R
3922 4492 0.107993 ACATGGTGGACATCTGAGCG 60.108 55.000 0.0 0.0 37.84 5.03 R
5512 8863 0.110486 TTCTGGGCAGAGTTTGGGAC 59.890 55.000 0.0 0.0 38.88 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
165 175 2.745308 CCATCTCCATCGCCACCCA 61.745 63.158 0.00 0.00 0.00 4.51
184 194 2.680352 ACCTCCTCGCATGACGGT 60.680 61.111 0.00 0.00 43.89 4.83
861 908 0.774908 TCCATCCCGGACAGGTTTTT 59.225 50.000 0.73 0.00 39.64 1.94
873 922 4.916273 GTTTTTGTGCGGCCGCGT 62.916 61.111 41.73 0.00 45.51 6.01
948 997 2.162681 CGCTCCAAAGGGACAAAATCT 58.837 47.619 0.00 0.00 38.64 2.40
972 1021 1.953686 CAAACCAGACGTCCATTTGGT 59.046 47.619 18.64 18.64 45.47 3.67
995 1044 2.125106 GCGGTGGAGTTGGCCTAG 60.125 66.667 3.32 0.00 0.00 3.02
1118 1172 2.116772 AGTCGGTCGTTCTCCCCA 59.883 61.111 0.00 0.00 0.00 4.96
1119 1173 1.532316 AGTCGGTCGTTCTCCCCAA 60.532 57.895 0.00 0.00 0.00 4.12
1124 1178 1.192803 GGTCGTTCTCCCCAAGACCT 61.193 60.000 5.75 0.00 45.68 3.85
1126 1180 0.903454 TCGTTCTCCCCAAGACCTCC 60.903 60.000 0.00 0.00 32.27 4.30
1127 1181 1.192146 CGTTCTCCCCAAGACCTCCA 61.192 60.000 0.00 0.00 32.27 3.86
1128 1182 0.615850 GTTCTCCCCAAGACCTCCAG 59.384 60.000 0.00 0.00 32.27 3.86
1129 1183 0.547712 TTCTCCCCAAGACCTCCAGG 60.548 60.000 0.00 0.00 42.17 4.45
1165 1224 2.103373 CGACTCCAGATTCCTTCTCCA 58.897 52.381 0.00 0.00 29.93 3.86
1167 1226 3.055819 CGACTCCAGATTCCTTCTCCAAA 60.056 47.826 0.00 0.00 29.93 3.28
1169 1228 3.913163 ACTCCAGATTCCTTCTCCAAACT 59.087 43.478 0.00 0.00 29.93 2.66
1170 1229 5.094387 ACTCCAGATTCCTTCTCCAAACTA 58.906 41.667 0.00 0.00 29.93 2.24
1171 1230 5.548056 ACTCCAGATTCCTTCTCCAAACTAA 59.452 40.000 0.00 0.00 29.93 2.24
1172 1231 5.805728 TCCAGATTCCTTCTCCAAACTAAC 58.194 41.667 0.00 0.00 29.93 2.34
1173 1232 5.548056 TCCAGATTCCTTCTCCAAACTAACT 59.452 40.000 0.00 0.00 29.93 2.24
1182 1241 3.971305 TCTCCAAACTAACTCAACTCCCA 59.029 43.478 0.00 0.00 0.00 4.37
1313 1382 0.988678 GAGTATCCCAGCCCCAACCT 60.989 60.000 0.00 0.00 0.00 3.50
1371 1442 3.626996 TTCCACCATGGCAGAGGCG 62.627 63.158 13.04 0.00 42.47 5.52
1436 1507 1.668151 GTGGTTGCTCTGTCCGGTC 60.668 63.158 0.00 0.00 0.00 4.79
1438 1509 2.584391 GGTTGCTCTGTCCGGTCCT 61.584 63.158 0.00 0.00 0.00 3.85
1454 1525 0.319555 TCCTGCCGTCTCGTTTCTTG 60.320 55.000 0.00 0.00 0.00 3.02
1455 1526 0.319555 CCTGCCGTCTCGTTTCTTGA 60.320 55.000 0.00 0.00 0.00 3.02
1456 1527 1.063806 CTGCCGTCTCGTTTCTTGAG 58.936 55.000 0.00 0.00 34.72 3.02
1458 1529 1.202486 TGCCGTCTCGTTTCTTGAGTT 60.202 47.619 0.00 0.00 34.99 3.01
1459 1530 1.865340 GCCGTCTCGTTTCTTGAGTTT 59.135 47.619 0.00 0.00 34.99 2.66
1460 1531 2.287103 GCCGTCTCGTTTCTTGAGTTTT 59.713 45.455 0.00 0.00 34.99 2.43
1461 1532 3.242641 GCCGTCTCGTTTCTTGAGTTTTT 60.243 43.478 0.00 0.00 34.99 1.94
1462 1533 4.271687 CCGTCTCGTTTCTTGAGTTTTTG 58.728 43.478 0.00 0.00 34.99 2.44
1463 1534 4.201783 CCGTCTCGTTTCTTGAGTTTTTGT 60.202 41.667 0.00 0.00 34.99 2.83
1464 1535 5.321516 CGTCTCGTTTCTTGAGTTTTTGTT 58.678 37.500 0.00 0.00 34.99 2.83
1465 1536 5.793457 CGTCTCGTTTCTTGAGTTTTTGTTT 59.207 36.000 0.00 0.00 34.99 2.83
1466 1537 6.022484 CGTCTCGTTTCTTGAGTTTTTGTTTC 60.022 38.462 0.00 0.00 34.99 2.78
1494 1582 2.505337 TTCCGTTCCGTGCGATCG 60.505 61.111 11.69 11.69 34.16 3.69
1538 1634 5.598830 GGATCCCTAGTCTTACAACAGATCA 59.401 44.000 0.00 0.00 31.39 2.92
1540 1636 6.716934 TCCCTAGTCTTACAACAGATCATC 57.283 41.667 0.00 0.00 0.00 2.92
1541 1637 5.299531 TCCCTAGTCTTACAACAGATCATCG 59.700 44.000 0.00 0.00 0.00 3.84
1543 1639 4.456280 AGTCTTACAACAGATCATCGCA 57.544 40.909 0.00 0.00 0.00 5.10
1546 1642 5.046529 GTCTTACAACAGATCATCGCATCT 58.953 41.667 0.00 0.00 33.00 2.90
1549 1645 4.662468 ACAACAGATCATCGCATCTAGT 57.338 40.909 0.00 0.00 31.47 2.57
1550 1646 5.016051 ACAACAGATCATCGCATCTAGTT 57.984 39.130 0.00 0.00 31.47 2.24
1551 1647 4.807834 ACAACAGATCATCGCATCTAGTTG 59.192 41.667 18.78 18.78 41.56 3.16
1552 1648 4.926140 ACAGATCATCGCATCTAGTTGA 57.074 40.909 4.94 0.00 31.47 3.18
1553 1649 5.268118 ACAGATCATCGCATCTAGTTGAA 57.732 39.130 4.94 0.00 31.47 2.69
1558 1654 3.447229 TCATCGCATCTAGTTGAAGGTGA 59.553 43.478 4.94 6.75 28.26 4.02
1560 1656 4.471904 TCGCATCTAGTTGAAGGTGATT 57.528 40.909 4.94 0.00 28.26 2.57
1561 1657 4.433615 TCGCATCTAGTTGAAGGTGATTC 58.566 43.478 4.94 0.00 38.50 2.52
1563 1659 5.359860 TCGCATCTAGTTGAAGGTGATTCTA 59.640 40.000 4.94 0.00 38.83 2.10
1564 1660 5.460419 CGCATCTAGTTGAAGGTGATTCTAC 59.540 44.000 4.94 0.00 42.02 2.59
1566 1662 6.478344 GCATCTAGTTGAAGGTGATTCTACAG 59.522 42.308 4.94 2.10 43.51 2.74
1572 1668 5.304686 TGAAGGTGATTCTACAGTTTGGT 57.695 39.130 0.00 0.00 38.83 3.67
1573 1669 5.690865 TGAAGGTGATTCTACAGTTTGGTT 58.309 37.500 0.00 0.00 38.83 3.67
1574 1670 5.763204 TGAAGGTGATTCTACAGTTTGGTTC 59.237 40.000 0.00 0.00 38.83 3.62
1575 1671 5.304686 AGGTGATTCTACAGTTTGGTTCA 57.695 39.130 0.00 0.00 0.00 3.18
1577 1673 5.063880 GGTGATTCTACAGTTTGGTTCAGT 58.936 41.667 0.00 0.00 0.00 3.41
1580 1676 7.227910 GGTGATTCTACAGTTTGGTTCAGTTTA 59.772 37.037 0.00 0.00 0.00 2.01
1581 1677 8.617809 GTGATTCTACAGTTTGGTTCAGTTTAA 58.382 33.333 0.00 0.00 0.00 1.52
1583 1679 9.827411 GATTCTACAGTTTGGTTCAGTTTAATC 57.173 33.333 0.00 0.00 0.00 1.75
1594 1699 7.432869 TGGTTCAGTTTAATCAACATCAAAGG 58.567 34.615 0.00 0.00 37.93 3.11
1595 1700 6.366061 GGTTCAGTTTAATCAACATCAAAGGC 59.634 38.462 0.00 0.00 37.93 4.35
1603 1713 4.365514 TCAACATCAAAGGCTAACCAGA 57.634 40.909 0.00 0.00 39.06 3.86
1606 1716 2.644798 ACATCAAAGGCTAACCAGAGGT 59.355 45.455 0.00 0.00 39.06 3.85
1663 1773 9.578576 TGGATTGAGATATTTCCCTTTTATCTG 57.421 33.333 0.00 0.00 33.83 2.90
1677 1787 9.892444 TCCCTTTTATCTGTATCTATTACTCCA 57.108 33.333 0.00 0.00 0.00 3.86
1686 1796 9.822727 TCTGTATCTATTACTCCATATGGAACA 57.177 33.333 24.54 19.47 44.91 3.18
1703 1813 4.895889 TGGAACACCAGATGGAGTATCTAG 59.104 45.833 5.72 0.00 44.34 2.43
1707 1817 3.829601 CACCAGATGGAGTATCTAGGACC 59.170 52.174 5.72 0.00 44.34 4.46
1718 1828 2.953284 TCTAGGACCTGGTATCTCGG 57.047 55.000 3.53 0.00 0.00 4.63
1761 1871 7.155328 AGATATGACCATCCGTTTAATGTCTC 58.845 38.462 0.00 0.00 0.00 3.36
1806 1928 4.433304 CGCGTTGTTTCAGTTTAGTTTCAG 59.567 41.667 0.00 0.00 0.00 3.02
1809 1933 6.962678 GCGTTGTTTCAGTTTAGTTTCAGTAA 59.037 34.615 0.00 0.00 0.00 2.24
1829 1953 0.034896 ACGCGATTTGAGGGTGTTCT 59.965 50.000 15.93 0.00 33.41 3.01
1830 1954 0.721718 CGCGATTTGAGGGTGTTCTC 59.278 55.000 0.00 0.00 0.00 2.87
1831 1955 1.673033 CGCGATTTGAGGGTGTTCTCT 60.673 52.381 0.00 0.00 34.98 3.10
1883 2009 9.778741 GGATTTCTGGTGATCAGTATTTATGTA 57.221 33.333 0.00 0.00 43.76 2.29
1932 2066 5.078411 CTGGACATATCAGCCTATGGTAC 57.922 47.826 4.23 0.00 34.11 3.34
1954 2088 6.528537 ACCAGCATAATGAAACATTTGCTA 57.471 33.333 21.02 2.34 38.30 3.49
1958 2092 7.493320 CCAGCATAATGAAACATTTGCTACATT 59.507 33.333 21.02 0.00 38.30 2.71
1993 2163 8.406172 TCAAGTTACTCTGAATTTTGTTTTGC 57.594 30.769 0.00 0.00 0.00 3.68
2004 2174 5.859205 ATTTTGTTTTGCTTGGTCTCTCT 57.141 34.783 0.00 0.00 0.00 3.10
2008 2178 6.377327 TTGTTTTGCTTGGTCTCTCTTAAG 57.623 37.500 0.00 0.00 0.00 1.85
2015 2185 4.572795 GCTTGGTCTCTCTTAAGCATTACC 59.427 45.833 0.00 4.03 43.65 2.85
2019 2189 4.900054 GGTCTCTCTTAAGCATTACCCCTA 59.100 45.833 0.00 0.00 0.00 3.53
2021 2191 4.583489 TCTCTCTTAAGCATTACCCCTACG 59.417 45.833 0.00 0.00 0.00 3.51
2033 2203 2.322658 ACCCCTACGTTGAAAGACAGA 58.677 47.619 0.00 0.00 0.00 3.41
2034 2204 2.299297 ACCCCTACGTTGAAAGACAGAG 59.701 50.000 0.00 0.00 0.00 3.35
2037 2207 4.401519 CCCCTACGTTGAAAGACAGAGATA 59.598 45.833 0.00 0.00 0.00 1.98
2043 2213 7.365840 ACGTTGAAAGACAGAGATATTTTCC 57.634 36.000 0.00 0.00 0.00 3.13
2045 2215 7.332182 ACGTTGAAAGACAGAGATATTTTCCTC 59.668 37.037 0.00 0.00 0.00 3.71
2048 2218 5.638530 AAGACAGAGATATTTTCCTCCCC 57.361 43.478 0.00 0.00 0.00 4.81
2050 2220 5.039645 AGACAGAGATATTTTCCTCCCCAA 58.960 41.667 0.00 0.00 0.00 4.12
2051 2221 5.492524 AGACAGAGATATTTTCCTCCCCAAA 59.507 40.000 0.00 0.00 0.00 3.28
2052 2222 5.760131 ACAGAGATATTTTCCTCCCCAAAG 58.240 41.667 0.00 0.00 0.00 2.77
2053 2223 4.582240 CAGAGATATTTTCCTCCCCAAAGC 59.418 45.833 0.00 0.00 0.00 3.51
2054 2224 3.891977 GAGATATTTTCCTCCCCAAAGCC 59.108 47.826 0.00 0.00 0.00 4.35
2055 2225 3.272020 AGATATTTTCCTCCCCAAAGCCA 59.728 43.478 0.00 0.00 0.00 4.75
2056 2226 2.414250 ATTTTCCTCCCCAAAGCCAA 57.586 45.000 0.00 0.00 0.00 4.52
2057 2227 2.182516 TTTTCCTCCCCAAAGCCAAA 57.817 45.000 0.00 0.00 0.00 3.28
2058 2228 1.715785 TTTCCTCCCCAAAGCCAAAG 58.284 50.000 0.00 0.00 0.00 2.77
2059 2229 0.856982 TTCCTCCCCAAAGCCAAAGA 59.143 50.000 0.00 0.00 0.00 2.52
2060 2230 1.084018 TCCTCCCCAAAGCCAAAGAT 58.916 50.000 0.00 0.00 0.00 2.40
2061 2231 2.283834 TCCTCCCCAAAGCCAAAGATA 58.716 47.619 0.00 0.00 0.00 1.98
2062 2232 2.858768 TCCTCCCCAAAGCCAAAGATAT 59.141 45.455 0.00 0.00 0.00 1.63
2063 2233 3.117512 TCCTCCCCAAAGCCAAAGATATC 60.118 47.826 0.00 0.00 0.00 1.63
2064 2234 3.117360 CCTCCCCAAAGCCAAAGATATCT 60.117 47.826 0.00 0.00 0.00 1.98
2065 2235 4.540715 CTCCCCAAAGCCAAAGATATCTT 58.459 43.478 12.37 12.37 37.91 2.40
2066 2236 4.536765 TCCCCAAAGCCAAAGATATCTTC 58.463 43.478 18.19 6.49 34.61 2.87
2067 2237 4.230502 TCCCCAAAGCCAAAGATATCTTCT 59.769 41.667 18.19 8.68 34.61 2.85
2068 2238 4.958581 CCCCAAAGCCAAAGATATCTTCTT 59.041 41.667 18.19 13.84 46.92 2.52
2106 2525 5.520376 AAAGACAGCAATGCTTTACTGTT 57.480 34.783 16.81 6.97 39.14 3.16
2107 2526 4.494350 AGACAGCAATGCTTTACTGTTG 57.506 40.909 16.81 0.00 39.14 3.33
2115 2534 6.646240 AGCAATGCTTTACTGTTGTAAAATGG 59.354 34.615 0.00 0.00 44.84 3.16
2119 2538 8.630054 ATGCTTTACTGTTGTAAAATGGAGTA 57.370 30.769 0.00 0.00 44.84 2.59
2122 2541 7.532884 GCTTTACTGTTGTAAAATGGAGTAACG 59.467 37.037 0.00 0.00 44.84 3.18
2126 2545 6.016610 ACTGTTGTAAAATGGAGTAACGCAAT 60.017 34.615 0.00 0.00 0.00 3.56
2184 2604 9.730705 AGATTTAAATCACTCTTCAGTCATGAA 57.269 29.630 26.02 0.00 39.22 2.57
2191 2611 6.441274 TCACTCTTCAGTCATGAAAAATTGC 58.559 36.000 0.00 0.00 44.68 3.56
2202 2622 8.592809 AGTCATGAAAAATTGCCCACTAATTAA 58.407 29.630 0.00 0.00 0.00 1.40
2203 2623 9.382275 GTCATGAAAAATTGCCCACTAATTAAT 57.618 29.630 0.00 0.00 0.00 1.40
2204 2624 9.956640 TCATGAAAAATTGCCCACTAATTAATT 57.043 25.926 5.89 5.89 0.00 1.40
2241 2662 3.939066 ACACAGCACACTAAATACTCCC 58.061 45.455 0.00 0.00 0.00 4.30
2255 2676 0.618981 ACTCCCGGTTTCAGGAATCC 59.381 55.000 0.00 0.00 0.00 3.01
2279 2700 5.148651 ACCAACTTACATACACTGGAGAC 57.851 43.478 0.00 0.00 0.00 3.36
2354 2775 1.410004 AGGCATGCCCATTCATCTTG 58.590 50.000 33.14 0.00 36.58 3.02
2382 2804 1.311859 TTTGCAGCAGTCTCCAAGTG 58.688 50.000 0.00 0.00 0.00 3.16
2406 2828 9.724839 GTGCATTCTTTTGTTTACAACTAACTA 57.275 29.630 0.00 0.00 35.28 2.24
2495 2919 1.880027 GGCATCTCGACAAACCTTGTT 59.120 47.619 0.00 0.00 45.52 2.83
2757 3185 5.772169 TGCACTGTATGAGCTATGAGAGTAT 59.228 40.000 0.00 0.00 33.37 2.12
2759 3187 7.448469 TGCACTGTATGAGCTATGAGAGTATAA 59.552 37.037 0.00 0.00 33.37 0.98
2760 3188 8.300286 GCACTGTATGAGCTATGAGAGTATAAA 58.700 37.037 0.00 0.00 0.00 1.40
2773 3201 6.444704 TGAGAGTATAAATTCTCACCCTCCT 58.555 40.000 8.15 0.00 41.89 3.69
2790 3218 3.072476 CCTCCTCAACAGGGTTAGAACAA 59.928 47.826 0.00 0.00 40.80 2.83
2812 3321 9.507329 AACAATAGCATACTACTTTGATATGGG 57.493 33.333 0.00 0.00 0.00 4.00
2935 3460 3.206150 AGTTCTTGTGTACCAGCTGTTG 58.794 45.455 13.81 0.00 0.00 3.33
2968 3493 5.858381 TGACTGCTAAACTCAATTCTGTCT 58.142 37.500 0.00 0.00 0.00 3.41
3359 3929 2.216898 GCCATCATAAGCTTCTTCGCT 58.783 47.619 0.00 0.00 43.31 4.93
3371 3941 1.739562 CTTCGCTGGCACCTCACTC 60.740 63.158 0.00 0.00 0.00 3.51
3374 3944 1.153745 CGCTGGCACCTCACTCTAC 60.154 63.158 0.00 0.00 0.00 2.59
3482 4052 3.953612 CAGAGGACAGCTCTCTCTTGTAT 59.046 47.826 0.53 0.00 39.36 2.29
3584 4154 1.383456 GCACAGCACCACAACTCCAA 61.383 55.000 0.00 0.00 0.00 3.53
3621 4191 7.283329 ACCTGTAAAGATCTAGGGCAAATAAG 58.717 38.462 12.86 0.00 34.60 1.73
3774 4344 6.318144 AGCATTTATTTCAGATGTCTGGACAG 59.682 38.462 9.94 0.00 45.48 3.51
3778 4348 0.545071 TCAGATGTCTGGACAGGGCA 60.545 55.000 9.94 0.29 45.48 5.36
3841 4411 2.192979 CCATGGCGGGTATGCACT 59.807 61.111 0.00 0.00 36.28 4.40
3856 4426 1.836391 CACTGTCACCCAGGTGGAA 59.164 57.895 16.63 4.79 46.06 3.53
3874 4444 5.946377 GGTGGAAGAACTGAAGATATTGGTT 59.054 40.000 0.00 0.00 0.00 3.67
3907 4477 1.069227 GTCTGGGCAACGACAATTGTC 60.069 52.381 25.68 25.68 41.47 3.18
3910 4480 1.606668 TGGGCAACGACAATTGTCTTC 59.393 47.619 30.45 18.01 42.66 2.87
3922 4492 3.512033 ATTGTCTTCTCGGCTGTCTAC 57.488 47.619 0.00 0.00 0.00 2.59
4607 5182 5.009010 TGAGCTTTGATGGTCAGAAAAGTTC 59.991 40.000 13.15 13.15 39.20 3.01
4610 5185 5.335191 GCTTTGATGGTCAGAAAAGTTCGAT 60.335 40.000 0.00 0.00 33.21 3.59
4617 5192 1.798223 CAGAAAAGTTCGATGGCGTCA 59.202 47.619 7.60 0.00 38.98 4.35
4618 5193 2.223144 CAGAAAAGTTCGATGGCGTCAA 59.777 45.455 7.60 0.00 38.98 3.18
4619 5194 2.480419 AGAAAAGTTCGATGGCGTCAAG 59.520 45.455 7.60 0.00 38.98 3.02
4651 5227 4.202472 CCTGAAGGTCTAAAAGACTTGGGT 60.202 45.833 6.99 0.00 44.46 4.51
4661 5237 0.321671 AGACTTGGGTGGTGTCATCG 59.678 55.000 0.00 0.00 33.56 3.84
4722 5298 6.640518 TCAGTACATGATCCCTCTGTTTAAC 58.359 40.000 0.00 0.00 31.12 2.01
4723 5299 6.440647 TCAGTACATGATCCCTCTGTTTAACT 59.559 38.462 0.00 0.00 31.12 2.24
4770 5346 9.077885 AGCTGTAATTCTCTCTATTAGAAGAGG 57.922 37.037 14.71 0.00 42.78 3.69
4779 5355 5.772672 TCTCTATTAGAAGAGGATCCAGTGC 59.227 44.000 15.82 0.00 42.78 4.40
4833 5409 7.951530 ATTTTATTCACTTGAAGTTGGCAAG 57.048 32.000 0.00 0.00 46.20 4.01
4929 5505 9.254133 ACTGATATGTTAATCTTTCGACTCATG 57.746 33.333 0.00 0.00 0.00 3.07
4930 5506 8.076714 TGATATGTTAATCTTTCGACTCATGC 57.923 34.615 0.00 0.00 0.00 4.06
4931 5507 7.710475 TGATATGTTAATCTTTCGACTCATGCA 59.290 33.333 0.00 0.00 0.00 3.96
5017 5593 2.780924 TCCCCACCTTTGCCTGGT 60.781 61.111 0.00 0.00 38.53 4.00
5021 5597 3.045142 CACCTTTGCCTGGTGCTG 58.955 61.111 6.88 0.00 46.73 4.41
5023 5599 2.115910 CCTTTGCCTGGTGCTGGA 59.884 61.111 0.00 0.00 42.00 3.86
5024 5600 1.975407 CCTTTGCCTGGTGCTGGAG 60.975 63.158 0.00 0.00 42.00 3.86
5025 5601 1.073722 CTTTGCCTGGTGCTGGAGA 59.926 57.895 0.00 0.00 42.00 3.71
5027 5603 2.416107 TTTGCCTGGTGCTGGAGAGG 62.416 60.000 0.00 0.00 42.00 3.69
5028 5604 3.005539 GCCTGGTGCTGGAGAGGA 61.006 66.667 0.00 0.00 36.87 3.71
5029 5605 3.028921 GCCTGGTGCTGGAGAGGAG 62.029 68.421 0.00 0.00 36.87 3.69
5030 5606 2.365586 CCTGGTGCTGGAGAGGAGG 61.366 68.421 0.00 0.00 0.00 4.30
5031 5607 1.611851 CTGGTGCTGGAGAGGAGGT 60.612 63.158 0.00 0.00 0.00 3.85
5032 5608 1.610673 TGGTGCTGGAGAGGAGGTC 60.611 63.158 0.00 0.00 0.00 3.85
5097 5678 7.305474 CGTTCCTGTAATTTGTTTTCTAGCAT 58.695 34.615 0.00 0.00 0.00 3.79
5098 5679 7.807907 CGTTCCTGTAATTTGTTTTCTAGCATT 59.192 33.333 0.00 0.00 0.00 3.56
5099 5680 8.915654 GTTCCTGTAATTTGTTTTCTAGCATTG 58.084 33.333 0.00 0.00 0.00 2.82
5100 5681 7.090173 TCCTGTAATTTGTTTTCTAGCATTGC 58.910 34.615 0.00 0.00 0.00 3.56
5101 5682 7.039784 TCCTGTAATTTGTTTTCTAGCATTGCT 60.040 33.333 16.63 16.63 43.41 3.91
5102 5683 7.274250 CCTGTAATTTGTTTTCTAGCATTGCTC 59.726 37.037 15.81 0.00 40.44 4.26
5103 5684 6.801377 TGTAATTTGTTTTCTAGCATTGCTCG 59.199 34.615 15.81 9.33 40.44 5.03
5104 5685 4.829064 TTTGTTTTCTAGCATTGCTCGT 57.171 36.364 15.81 0.00 40.44 4.18
5105 5686 3.811722 TGTTTTCTAGCATTGCTCGTG 57.188 42.857 15.81 7.13 40.44 4.35
5106 5687 3.138304 TGTTTTCTAGCATTGCTCGTGT 58.862 40.909 15.81 0.00 40.44 4.49
5107 5688 3.058983 TGTTTTCTAGCATTGCTCGTGTG 60.059 43.478 15.81 2.17 40.44 3.82
5108 5689 1.725641 TTCTAGCATTGCTCGTGTGG 58.274 50.000 15.81 0.47 40.44 4.17
5109 5690 0.108186 TCTAGCATTGCTCGTGTGGG 60.108 55.000 15.81 0.00 40.44 4.61
5110 5691 0.391661 CTAGCATTGCTCGTGTGGGT 60.392 55.000 15.81 0.00 40.44 4.51
5111 5692 0.391130 TAGCATTGCTCGTGTGGGTC 60.391 55.000 15.81 0.00 40.44 4.46
5112 5693 1.672356 GCATTGCTCGTGTGGGTCT 60.672 57.895 0.16 0.00 0.00 3.85
5113 5694 1.237285 GCATTGCTCGTGTGGGTCTT 61.237 55.000 0.16 0.00 0.00 3.01
5114 5695 1.238439 CATTGCTCGTGTGGGTCTTT 58.762 50.000 0.00 0.00 0.00 2.52
5115 5696 1.608590 CATTGCTCGTGTGGGTCTTTT 59.391 47.619 0.00 0.00 0.00 2.27
5116 5697 1.021202 TTGCTCGTGTGGGTCTTTTG 58.979 50.000 0.00 0.00 0.00 2.44
5117 5698 1.282875 GCTCGTGTGGGTCTTTTGC 59.717 57.895 0.00 0.00 0.00 3.68
5118 5699 1.166531 GCTCGTGTGGGTCTTTTGCT 61.167 55.000 0.00 0.00 0.00 3.91
5119 5700 1.308998 CTCGTGTGGGTCTTTTGCTT 58.691 50.000 0.00 0.00 0.00 3.91
5120 5701 1.002468 CTCGTGTGGGTCTTTTGCTTG 60.002 52.381 0.00 0.00 0.00 4.01
5121 5702 0.738389 CGTGTGGGTCTTTTGCTTGT 59.262 50.000 0.00 0.00 0.00 3.16
5122 5703 1.268539 CGTGTGGGTCTTTTGCTTGTC 60.269 52.381 0.00 0.00 0.00 3.18
5123 5704 1.748493 GTGTGGGTCTTTTGCTTGTCA 59.252 47.619 0.00 0.00 0.00 3.58
5128 5709 2.165437 GGGTCTTTTGCTTGTCAACACA 59.835 45.455 0.00 0.00 33.73 3.72
5131 5712 3.608073 GTCTTTTGCTTGTCAACACACAC 59.392 43.478 0.00 0.00 33.73 3.82
5150 5731 5.291614 ACACACAATTGCATGTCAAAACTTC 59.708 36.000 5.05 0.00 38.34 3.01
5156 5737 6.592798 ATTGCATGTCAAAACTTCAACTTG 57.407 33.333 6.65 0.00 38.34 3.16
5171 5752 7.264947 ACTTCAACTTGTTGAACTTATTTGGG 58.735 34.615 20.75 12.39 36.15 4.12
5172 5753 5.596845 TCAACTTGTTGAACTTATTTGGGC 58.403 37.500 13.05 0.00 0.00 5.36
5173 5754 5.127845 TCAACTTGTTGAACTTATTTGGGCA 59.872 36.000 13.05 0.00 0.00 5.36
5174 5755 4.944048 ACTTGTTGAACTTATTTGGGCAC 58.056 39.130 0.00 0.00 0.00 5.01
5175 5756 4.404073 ACTTGTTGAACTTATTTGGGCACA 59.596 37.500 0.00 0.00 0.00 4.57
5177 5758 5.543507 TGTTGAACTTATTTGGGCACATT 57.456 34.783 0.00 0.00 0.00 2.71
5178 5759 5.537188 TGTTGAACTTATTTGGGCACATTC 58.463 37.500 0.00 0.00 0.00 2.67
5180 5761 3.823873 TGAACTTATTTGGGCACATTCGT 59.176 39.130 0.00 0.00 0.00 3.85
5181 5762 4.279671 TGAACTTATTTGGGCACATTCGTT 59.720 37.500 0.00 0.00 0.00 3.85
5191 7101 1.466360 GCACATTCGTTCCTGCATGAC 60.466 52.381 0.00 0.00 0.00 3.06
5219 7129 1.273327 CTGAAACCAACCCTGCATTCC 59.727 52.381 0.00 0.00 0.00 3.01
5220 7130 1.337118 GAAACCAACCCTGCATTCCA 58.663 50.000 0.00 0.00 0.00 3.53
5222 7132 1.269012 AACCAACCCTGCATTCCATG 58.731 50.000 0.00 0.00 0.00 3.66
5223 7133 0.409092 ACCAACCCTGCATTCCATGA 59.591 50.000 0.00 0.00 0.00 3.07
5224 7134 1.203162 ACCAACCCTGCATTCCATGAA 60.203 47.619 0.00 0.00 0.00 2.57
5225 7135 2.112998 CCAACCCTGCATTCCATGAAT 58.887 47.619 0.00 0.00 31.86 2.57
5226 7136 2.502538 CCAACCCTGCATTCCATGAATT 59.497 45.455 0.00 0.00 28.87 2.17
5227 7137 3.527533 CAACCCTGCATTCCATGAATTG 58.472 45.455 0.00 0.00 28.87 2.32
5250 8599 1.479323 GTTGGAGGACATGCATGCATT 59.521 47.619 30.32 20.55 33.90 3.56
5251 8600 1.107945 TGGAGGACATGCATGCATTG 58.892 50.000 30.32 24.85 33.90 2.82
5270 8619 1.365699 GCATGGGCATTTTCTTGCAG 58.634 50.000 0.00 0.00 44.59 4.41
5273 8622 2.529780 TGGGCATTTTCTTGCAGTTG 57.470 45.000 0.00 0.00 44.59 3.16
5274 8623 1.150827 GGGCATTTTCTTGCAGTTGC 58.849 50.000 0.00 0.00 44.59 4.17
5320 8669 6.695713 GGGTCAACAACTTGTGATTAGAAAAC 59.304 38.462 0.00 0.00 0.00 2.43
5381 8732 0.526211 CCATGGAGACGAGACGTGAA 59.474 55.000 5.56 0.00 41.37 3.18
5468 8819 4.487714 TGACCACAGTTTTCTTCTGAGT 57.512 40.909 0.00 0.00 36.81 3.41
5512 8863 5.105797 TGCATCACCTTAACTAATTTGGCAG 60.106 40.000 0.00 0.00 0.00 4.85
5532 8883 0.401738 TCCCAAACTCTGCCCAGAAG 59.598 55.000 0.00 0.00 36.94 2.85
5536 8887 3.160269 CCAAACTCTGCCCAGAAGAAAT 58.840 45.455 0.00 0.00 36.94 2.17
5577 8928 9.883142 AGATAAACTAAACAATCTCTTCTCCTG 57.117 33.333 0.00 0.00 0.00 3.86
5578 8929 9.103861 GATAAACTAAACAATCTCTTCTCCTGG 57.896 37.037 0.00 0.00 0.00 4.45
5579 8930 6.688073 AACTAAACAATCTCTTCTCCTGGA 57.312 37.500 0.00 0.00 0.00 3.86
5580 8931 6.293004 ACTAAACAATCTCTTCTCCTGGAG 57.707 41.667 17.84 17.84 0.00 3.86
5581 8932 6.019748 ACTAAACAATCTCTTCTCCTGGAGA 58.980 40.000 22.30 22.30 41.88 3.71
5582 8933 4.817318 AACAATCTCTTCTCCTGGAGAC 57.183 45.455 25.62 0.00 40.71 3.36
5583 8934 3.103742 ACAATCTCTTCTCCTGGAGACC 58.896 50.000 25.62 0.00 40.71 3.85
5584 8935 3.102972 CAATCTCTTCTCCTGGAGACCA 58.897 50.000 25.62 13.83 40.71 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
165 175 2.573869 CGTCATGCGAGGAGGTGT 59.426 61.111 3.85 0.00 44.77 4.16
362 372 4.690153 ACCAGGTCAGGGTGGAAT 57.310 55.556 0.00 0.00 37.23 3.01
846 893 1.104577 GCACAAAAACCTGTCCGGGA 61.105 55.000 0.00 0.00 36.97 5.14
880 929 1.148949 CCGATGGATCATGGGTGCA 59.851 57.895 0.00 0.00 35.47 4.57
891 940 2.233605 ATCCGCGTTTGTCCGATGGA 62.234 55.000 4.92 0.00 37.98 3.41
948 997 0.762418 ATGGACGTCTGGTTTGGTCA 59.238 50.000 16.46 1.43 0.00 4.02
995 1044 1.226311 AAGGATTCCTCCCATCACCC 58.774 55.000 5.48 0.00 43.21 4.61
1118 1172 1.492993 GGTTGGAGCCTGGAGGTCTT 61.493 60.000 0.00 0.00 42.87 3.01
1119 1173 1.920835 GGTTGGAGCCTGGAGGTCT 60.921 63.158 0.00 0.00 42.87 3.85
1124 1178 2.449518 TGGTGGTTGGAGCCTGGA 60.450 61.111 0.00 0.00 0.00 3.86
1126 1180 1.302832 GAGTGGTGGTTGGAGCCTG 60.303 63.158 0.00 0.00 0.00 4.85
1127 1181 2.529744 GGAGTGGTGGTTGGAGCCT 61.530 63.158 0.00 0.00 0.00 4.58
1128 1182 2.034221 GGAGTGGTGGTTGGAGCC 59.966 66.667 0.00 0.00 0.00 4.70
1129 1183 2.358737 CGGAGTGGTGGTTGGAGC 60.359 66.667 0.00 0.00 0.00 4.70
1165 1224 2.107726 GGGGTGGGAGTTGAGTTAGTTT 59.892 50.000 0.00 0.00 0.00 2.66
1167 1226 1.359168 GGGGTGGGAGTTGAGTTAGT 58.641 55.000 0.00 0.00 0.00 2.24
1169 1228 0.178926 TCGGGGTGGGAGTTGAGTTA 60.179 55.000 0.00 0.00 0.00 2.24
1170 1229 1.057851 TTCGGGGTGGGAGTTGAGTT 61.058 55.000 0.00 0.00 0.00 3.01
1171 1230 1.460689 TTCGGGGTGGGAGTTGAGT 60.461 57.895 0.00 0.00 0.00 3.41
1172 1231 1.192146 TCTTCGGGGTGGGAGTTGAG 61.192 60.000 0.00 0.00 0.00 3.02
1173 1232 1.152204 TCTTCGGGGTGGGAGTTGA 60.152 57.895 0.00 0.00 0.00 3.18
1182 1241 2.758737 CCGGCTAGTCTTCGGGGT 60.759 66.667 0.00 0.00 40.07 4.95
1436 1507 0.319555 TCAAGAAACGAGACGGCAGG 60.320 55.000 0.00 0.00 0.00 4.85
1438 1509 0.387929 ACTCAAGAAACGAGACGGCA 59.612 50.000 0.00 0.00 34.47 5.69
1454 1525 2.601314 GCACCAACCGAAACAAAAACTC 59.399 45.455 0.00 0.00 0.00 3.01
1455 1526 2.612604 GCACCAACCGAAACAAAAACT 58.387 42.857 0.00 0.00 0.00 2.66
1456 1527 1.661617 GGCACCAACCGAAACAAAAAC 59.338 47.619 0.00 0.00 0.00 2.43
1458 1529 1.187087 AGGCACCAACCGAAACAAAA 58.813 45.000 0.00 0.00 33.69 2.44
1459 1530 1.135333 GAAGGCACCAACCGAAACAAA 59.865 47.619 0.00 0.00 33.69 2.83
1460 1531 0.741915 GAAGGCACCAACCGAAACAA 59.258 50.000 0.00 0.00 33.69 2.83
1461 1532 1.104577 GGAAGGCACCAACCGAAACA 61.105 55.000 0.00 0.00 33.69 2.83
1462 1533 1.658114 GGAAGGCACCAACCGAAAC 59.342 57.895 0.00 0.00 33.69 2.78
1463 1534 1.894756 CGGAAGGCACCAACCGAAA 60.895 57.895 15.98 0.00 46.94 3.46
1464 1535 2.281208 CGGAAGGCACCAACCGAA 60.281 61.111 15.98 0.00 46.94 4.30
1465 1536 2.999739 GAACGGAAGGCACCAACCGA 63.000 60.000 23.97 0.00 46.94 4.69
1494 1582 2.202756 CCTAAGCACGCGACCTCC 60.203 66.667 15.93 0.00 0.00 4.30
1538 1634 4.679373 ATCACCTTCAACTAGATGCGAT 57.321 40.909 0.00 0.00 0.00 4.58
1540 1636 4.437239 AGAATCACCTTCAACTAGATGCG 58.563 43.478 0.00 0.00 36.24 4.73
1541 1637 6.341316 TGTAGAATCACCTTCAACTAGATGC 58.659 40.000 0.00 0.00 36.24 3.91
1543 1639 7.726033 ACTGTAGAATCACCTTCAACTAGAT 57.274 36.000 0.00 0.00 36.24 1.98
1546 1642 6.934645 CCAAACTGTAGAATCACCTTCAACTA 59.065 38.462 0.00 0.00 36.24 2.24
1549 1645 5.690865 ACCAAACTGTAGAATCACCTTCAA 58.309 37.500 0.00 0.00 36.24 2.69
1550 1646 5.304686 ACCAAACTGTAGAATCACCTTCA 57.695 39.130 0.00 0.00 36.24 3.02
1551 1647 5.763204 TGAACCAAACTGTAGAATCACCTTC 59.237 40.000 0.00 0.00 0.00 3.46
1552 1648 5.690865 TGAACCAAACTGTAGAATCACCTT 58.309 37.500 0.00 0.00 0.00 3.50
1553 1649 5.163195 ACTGAACCAAACTGTAGAATCACCT 60.163 40.000 0.00 0.00 0.00 4.00
1558 1654 9.349713 TGATTAAACTGAACCAAACTGTAGAAT 57.650 29.630 0.00 0.00 0.00 2.40
1560 1656 8.617809 GTTGATTAAACTGAACCAAACTGTAGA 58.382 33.333 0.00 0.00 35.75 2.59
1561 1657 8.402472 TGTTGATTAAACTGAACCAAACTGTAG 58.598 33.333 0.00 0.00 39.70 2.74
1563 1659 7.164230 TGTTGATTAAACTGAACCAAACTGT 57.836 32.000 0.00 0.00 39.70 3.55
1564 1660 7.920151 TGATGTTGATTAAACTGAACCAAACTG 59.080 33.333 0.00 0.00 39.70 3.16
1566 1662 8.641499 TTGATGTTGATTAAACTGAACCAAAC 57.359 30.769 0.00 0.00 39.70 2.93
1572 1668 7.288810 AGCCTTTGATGTTGATTAAACTGAA 57.711 32.000 0.00 0.00 39.70 3.02
1573 1669 6.899393 AGCCTTTGATGTTGATTAAACTGA 57.101 33.333 0.00 0.00 39.70 3.41
1574 1670 7.542130 GGTTAGCCTTTGATGTTGATTAAACTG 59.458 37.037 0.00 0.00 39.70 3.16
1575 1671 7.232534 TGGTTAGCCTTTGATGTTGATTAAACT 59.767 33.333 0.00 0.00 36.28 2.66
1577 1673 7.450014 TCTGGTTAGCCTTTGATGTTGATTAAA 59.550 33.333 0.00 0.00 35.27 1.52
1580 1676 5.324409 TCTGGTTAGCCTTTGATGTTGATT 58.676 37.500 0.00 0.00 35.27 2.57
1581 1677 4.922206 TCTGGTTAGCCTTTGATGTTGAT 58.078 39.130 0.00 0.00 35.27 2.57
1583 1679 3.441572 CCTCTGGTTAGCCTTTGATGTTG 59.558 47.826 0.00 0.00 35.27 3.33
1594 1699 3.828875 ATGAAGCTACCTCTGGTTAGC 57.171 47.619 0.00 2.89 37.09 3.09
1595 1700 4.262249 GCCTATGAAGCTACCTCTGGTTAG 60.262 50.000 0.00 0.00 37.09 2.34
1606 1716 2.040009 GCCGGTGGCCTATGAAGCTA 62.040 60.000 3.32 0.00 44.06 3.32
1663 1773 8.812972 TGGTGTTCCATATGGAGTAATAGATAC 58.187 37.037 23.35 15.70 46.36 2.24
1665 1775 7.734865 TCTGGTGTTCCATATGGAGTAATAGAT 59.265 37.037 23.35 0.00 46.36 1.98
1667 1777 7.303182 TCTGGTGTTCCATATGGAGTAATAG 57.697 40.000 23.35 18.77 46.36 1.73
1668 1778 7.679783 CATCTGGTGTTCCATATGGAGTAATA 58.320 38.462 23.35 6.76 46.36 0.98
1669 1779 6.537355 CATCTGGTGTTCCATATGGAGTAAT 58.463 40.000 23.35 9.53 46.36 1.89
1670 1780 5.928976 CATCTGGTGTTCCATATGGAGTAA 58.071 41.667 23.35 11.15 46.36 2.24
1671 1781 5.551305 CATCTGGTGTTCCATATGGAGTA 57.449 43.478 23.35 14.13 46.36 2.59
1672 1782 4.428294 CATCTGGTGTTCCATATGGAGT 57.572 45.455 23.35 2.61 46.36 3.85
1676 1786 4.428294 ACTCCATCTGGTGTTCCATATG 57.572 45.455 0.00 0.00 43.53 1.78
1677 1787 6.087456 AGATACTCCATCTGGTGTTCCATAT 58.913 40.000 9.04 0.00 42.69 1.78
1678 1788 5.467738 AGATACTCCATCTGGTGTTCCATA 58.532 41.667 9.04 0.00 42.69 2.74
1679 1789 4.302067 AGATACTCCATCTGGTGTTCCAT 58.698 43.478 9.04 0.00 42.69 3.41
1680 1790 3.724478 AGATACTCCATCTGGTGTTCCA 58.276 45.455 9.04 0.00 42.69 3.53
1681 1791 4.282195 CCTAGATACTCCATCTGGTGTTCC 59.718 50.000 9.04 2.91 44.10 3.62
1682 1792 5.010213 GTCCTAGATACTCCATCTGGTGTTC 59.990 48.000 9.04 7.17 44.10 3.18
1683 1793 4.896482 GTCCTAGATACTCCATCTGGTGTT 59.104 45.833 9.04 0.00 44.10 3.32
1684 1794 4.475345 GTCCTAGATACTCCATCTGGTGT 58.525 47.826 8.79 8.79 44.10 4.16
1685 1795 3.829601 GGTCCTAGATACTCCATCTGGTG 59.170 52.174 0.00 0.00 44.10 4.17
1686 1796 3.730059 AGGTCCTAGATACTCCATCTGGT 59.270 47.826 0.00 0.00 44.10 4.00
1687 1797 4.085733 CAGGTCCTAGATACTCCATCTGG 58.914 52.174 0.00 0.00 44.10 3.86
1688 1798 4.085733 CCAGGTCCTAGATACTCCATCTG 58.914 52.174 0.00 0.00 44.10 2.90
1689 1799 3.730059 ACCAGGTCCTAGATACTCCATCT 59.270 47.826 0.00 0.00 46.19 2.90
1690 1800 4.120946 ACCAGGTCCTAGATACTCCATC 57.879 50.000 0.00 0.00 0.00 3.51
1691 1801 5.557939 AGATACCAGGTCCTAGATACTCCAT 59.442 44.000 0.00 0.00 0.00 3.41
1692 1802 4.920749 AGATACCAGGTCCTAGATACTCCA 59.079 45.833 0.00 0.00 0.00 3.86
1693 1803 5.503002 GAGATACCAGGTCCTAGATACTCC 58.497 50.000 0.00 0.00 0.00 3.85
1694 1804 5.180271 CGAGATACCAGGTCCTAGATACTC 58.820 50.000 0.00 0.00 0.00 2.59
1695 1805 4.019141 CCGAGATACCAGGTCCTAGATACT 60.019 50.000 0.00 0.00 0.00 2.12
1696 1806 4.263418 ACCGAGATACCAGGTCCTAGATAC 60.263 50.000 0.00 0.00 31.69 2.24
1703 1813 2.299297 CCATAACCGAGATACCAGGTCC 59.701 54.545 0.00 0.00 37.26 4.46
1707 1817 4.369182 GAACACCATAACCGAGATACCAG 58.631 47.826 0.00 0.00 0.00 4.00
1736 1846 7.067496 AGACATTAAACGGATGGTCATATCT 57.933 36.000 0.00 0.00 0.00 1.98
1737 1847 6.929049 TGAGACATTAAACGGATGGTCATATC 59.071 38.462 0.00 0.00 0.00 1.63
1738 1848 6.826668 TGAGACATTAAACGGATGGTCATAT 58.173 36.000 0.00 0.00 0.00 1.78
1739 1849 6.097696 TCTGAGACATTAAACGGATGGTCATA 59.902 38.462 0.00 0.00 0.00 2.15
1740 1850 5.097742 TGAGACATTAAACGGATGGTCAT 57.902 39.130 0.00 0.00 0.00 3.06
1741 1851 4.221924 TCTGAGACATTAAACGGATGGTCA 59.778 41.667 0.00 0.00 0.00 4.02
1742 1852 4.755411 TCTGAGACATTAAACGGATGGTC 58.245 43.478 0.00 0.00 0.00 4.02
1743 1853 4.819105 TCTGAGACATTAAACGGATGGT 57.181 40.909 0.00 0.00 0.00 3.55
1744 1854 5.237344 GGAATCTGAGACATTAAACGGATGG 59.763 44.000 0.00 0.00 0.00 3.51
1761 1871 4.443725 CGAATCTCTCACGATTGGAATCTG 59.556 45.833 0.00 0.00 33.96 2.90
1806 1928 1.802365 ACACCCTCAAATCGCGTTTAC 59.198 47.619 5.77 0.00 0.00 2.01
1809 1933 0.872388 GAACACCCTCAAATCGCGTT 59.128 50.000 5.77 0.00 0.00 4.84
1820 1944 1.807814 ACTGTCCAAGAGAACACCCT 58.192 50.000 0.00 0.00 0.00 4.34
1829 1953 5.419542 CAAGAAATCCGATACTGTCCAAGA 58.580 41.667 0.00 0.00 0.00 3.02
1830 1954 4.572389 CCAAGAAATCCGATACTGTCCAAG 59.428 45.833 0.00 0.00 0.00 3.61
1831 1955 4.513442 CCAAGAAATCCGATACTGTCCAA 58.487 43.478 0.00 0.00 0.00 3.53
1887 2013 7.993183 CCAGCTTAGGAAAACTTCATTATAGGA 59.007 37.037 0.00 0.00 0.00 2.94
1896 2022 6.823689 TGATATGTCCAGCTTAGGAAAACTTC 59.176 38.462 0.00 0.00 39.92 3.01
1929 2058 6.332630 AGCAAATGTTTCATTATGCTGGTAC 58.667 36.000 19.92 0.00 42.12 3.34
1932 2066 6.331845 TGTAGCAAATGTTTCATTATGCTGG 58.668 36.000 24.26 6.32 43.39 4.85
1972 2106 7.277760 ACCAAGCAAAACAAAATTCAGAGTAAC 59.722 33.333 0.00 0.00 0.00 2.50
1973 2107 7.327214 ACCAAGCAAAACAAAATTCAGAGTAA 58.673 30.769 0.00 0.00 0.00 2.24
1993 2163 5.119694 GGGTAATGCTTAAGAGAGACCAAG 58.880 45.833 6.67 0.00 0.00 3.61
2004 2174 4.822685 TCAACGTAGGGGTAATGCTTAA 57.177 40.909 0.00 0.00 0.00 1.85
2008 2178 3.373130 GTCTTTCAACGTAGGGGTAATGC 59.627 47.826 0.00 0.00 0.00 3.56
2015 2185 3.936372 TCTCTGTCTTTCAACGTAGGG 57.064 47.619 0.00 0.00 0.00 3.53
2019 2189 7.162082 AGGAAAATATCTCTGTCTTTCAACGT 58.838 34.615 0.00 0.00 0.00 3.99
2021 2191 7.066404 GGGAGGAAAATATCTCTGTCTTTCAAC 59.934 40.741 0.00 0.00 0.00 3.18
2033 2203 3.272020 TGGCTTTGGGGAGGAAAATATCT 59.728 43.478 0.00 0.00 0.00 1.98
2034 2204 3.642141 TGGCTTTGGGGAGGAAAATATC 58.358 45.455 0.00 0.00 0.00 1.63
2037 2207 2.414250 TTGGCTTTGGGGAGGAAAAT 57.586 45.000 0.00 0.00 0.00 1.82
2043 2213 4.176120 AGATATCTTTGGCTTTGGGGAG 57.824 45.455 0.00 0.00 0.00 4.30
2045 2215 4.540715 AGAAGATATCTTTGGCTTTGGGG 58.459 43.478 18.88 0.00 33.39 4.96
2076 2492 2.322161 CATTGCTGTCTTTTGCTTCGG 58.678 47.619 0.00 0.00 0.00 4.30
2077 2493 1.717645 GCATTGCTGTCTTTTGCTTCG 59.282 47.619 0.16 0.00 0.00 3.79
2106 2525 6.811253 AGAATTGCGTTACTCCATTTTACA 57.189 33.333 0.00 0.00 0.00 2.41
2107 2526 8.827677 AGATAGAATTGCGTTACTCCATTTTAC 58.172 33.333 0.00 0.00 0.00 2.01
2115 2534 9.197694 ACATTGATAGATAGAATTGCGTTACTC 57.802 33.333 0.00 0.00 0.00 2.59
2119 2538 8.887036 TGTACATTGATAGATAGAATTGCGTT 57.113 30.769 0.00 0.00 0.00 4.84
2203 2623 9.660180 TGTGCTGTGTTATAACTTATCACATAA 57.340 29.630 16.33 1.73 38.15 1.90
2204 2624 9.093970 GTGTGCTGTGTTATAACTTATCACATA 57.906 33.333 23.38 10.77 38.15 2.29
2205 2625 7.824289 AGTGTGCTGTGTTATAACTTATCACAT 59.176 33.333 23.38 15.61 38.15 3.21
2206 2626 7.158697 AGTGTGCTGTGTTATAACTTATCACA 58.841 34.615 16.33 18.58 37.44 3.58
2207 2627 7.596749 AGTGTGCTGTGTTATAACTTATCAC 57.403 36.000 16.33 16.72 0.00 3.06
2208 2628 9.713713 TTTAGTGTGCTGTGTTATAACTTATCA 57.286 29.630 16.33 9.31 0.00 2.15
2212 2632 9.720769 AGTATTTAGTGTGCTGTGTTATAACTT 57.279 29.630 16.33 0.00 0.00 2.66
2213 2633 9.367444 GAGTATTTAGTGTGCTGTGTTATAACT 57.633 33.333 16.33 0.00 0.00 2.24
2216 2636 7.270047 GGGAGTATTTAGTGTGCTGTGTTATA 58.730 38.462 0.00 0.00 0.00 0.98
2241 2662 1.904287 TGGTTGGATTCCTGAAACCG 58.096 50.000 15.17 0.00 44.14 4.44
2255 2676 5.408604 GTCTCCAGTGTATGTAAGTTGGTTG 59.591 44.000 0.00 0.00 0.00 3.77
2279 2700 1.269166 CAGAAAAGTCGACGGATCCG 58.731 55.000 32.20 32.20 46.03 4.18
2375 2796 6.214191 TGTAAACAAAAGAATGCACTTGGA 57.786 33.333 0.00 0.00 0.00 3.53
2376 2797 6.900568 TTGTAAACAAAAGAATGCACTTGG 57.099 33.333 0.00 0.00 32.11 3.61
2732 3160 4.202101 ACTCTCATAGCTCATACAGTGCAC 60.202 45.833 9.40 9.40 39.15 4.57
2757 3185 4.019321 CCTGTTGAGGAGGGTGAGAATTTA 60.019 45.833 0.00 0.00 42.93 1.40
2759 3187 2.307098 CCTGTTGAGGAGGGTGAGAATT 59.693 50.000 0.00 0.00 42.93 2.17
2760 3188 1.912043 CCTGTTGAGGAGGGTGAGAAT 59.088 52.381 0.00 0.00 42.93 2.40
2762 3190 0.545309 CCCTGTTGAGGAGGGTGAGA 60.545 60.000 0.00 0.00 44.85 3.27
2773 3201 5.235850 TGCTATTGTTCTAACCCTGTTGA 57.764 39.130 0.00 0.00 0.00 3.18
2790 3218 7.814693 ACCCCATATCAAAGTAGTATGCTAT 57.185 36.000 0.00 0.00 0.00 2.97
2812 3321 9.726438 AAGCATAACTATTTCATAGGACATACC 57.274 33.333 0.00 0.00 37.18 2.73
2884 3394 4.396166 ACCTTTCACAGTAATGCATACAGC 59.604 41.667 0.00 0.00 45.96 4.40
2935 3460 6.341316 TGAGTTTAGCAGTCAGATATGAACC 58.659 40.000 0.00 0.00 30.65 3.62
2968 3493 6.887545 CCCCTACAATTACAACATGAGGTTAA 59.112 38.462 0.00 0.00 37.72 2.01
3011 3581 3.191078 AGCATAGGAACTGATGCTGAC 57.809 47.619 8.49 0.00 46.13 3.51
3359 3929 2.238084 ATCTGTAGAGTGAGGTGCCA 57.762 50.000 0.00 0.00 0.00 4.92
3371 3941 3.441572 CACCTGGCTTTTGGAATCTGTAG 59.558 47.826 0.00 0.00 0.00 2.74
3374 3944 1.547372 CCACCTGGCTTTTGGAATCTG 59.453 52.381 0.00 0.00 31.39 2.90
3482 4052 1.559682 GAAACCCCATCTGGTAGCTCA 59.440 52.381 0.00 0.00 37.76 4.26
3774 4344 4.078639 AGATCAGTAATTGTAGCTGCCC 57.921 45.455 0.00 0.00 0.00 5.36
3778 4348 7.559486 TCACATCAAGATCAGTAATTGTAGCT 58.441 34.615 0.00 0.00 0.00 3.32
3835 4405 3.580084 ACCTGGGTGACAGTGCAT 58.420 55.556 0.00 0.00 46.06 3.96
3856 4426 8.095452 ACATCCTAACCAATATCTTCAGTTCT 57.905 34.615 0.00 0.00 0.00 3.01
3907 4477 0.248296 GAGCGTAGACAGCCGAGAAG 60.248 60.000 0.00 0.00 34.64 2.85
3910 4480 1.063327 CTGAGCGTAGACAGCCGAG 59.937 63.158 0.00 0.00 34.64 4.63
3922 4492 0.107993 ACATGGTGGACATCTGAGCG 60.108 55.000 0.00 0.00 37.84 5.03
4486 5056 3.429547 GCAGCCAGAAGAAGTAATCGAGA 60.430 47.826 0.00 0.00 0.00 4.04
4607 5182 3.869272 GCTGCCTTGACGCCATCG 61.869 66.667 0.00 0.00 42.43 3.84
4623 5198 3.189495 GTCTTTTAGACCTTCAGGCAAGC 59.811 47.826 0.00 0.00 39.28 4.01
4629 5204 4.757149 CACCCAAGTCTTTTAGACCTTCAG 59.243 45.833 3.33 0.00 46.18 3.02
4651 5227 4.729227 ATACATGTACACGATGACACCA 57.271 40.909 7.96 0.00 0.00 4.17
4661 5237 8.630278 ACAGATTTCGAAGTATACATGTACAC 57.370 34.615 7.96 6.99 0.00 2.90
4692 5268 4.098654 AGAGGGATCATGTACTGAGAAACG 59.901 45.833 0.00 0.00 37.28 3.60
4696 5272 4.256983 ACAGAGGGATCATGTACTGAGA 57.743 45.455 0.00 0.00 37.28 3.27
4707 5283 5.069501 ACACGTAGTTAAACAGAGGGATC 57.930 43.478 0.00 0.00 41.61 3.36
4760 5336 2.366916 CCGCACTGGATCCTCTTCTAAT 59.633 50.000 14.23 0.00 42.00 1.73
4762 5338 1.403814 CCGCACTGGATCCTCTTCTA 58.596 55.000 14.23 0.00 42.00 2.10
4763 5339 1.333636 CCCGCACTGGATCCTCTTCT 61.334 60.000 14.23 0.00 42.00 2.85
4764 5340 1.144936 CCCGCACTGGATCCTCTTC 59.855 63.158 14.23 0.00 42.00 2.87
4766 5342 2.039624 ACCCGCACTGGATCCTCT 59.960 61.111 14.23 0.00 42.00 3.69
4767 5343 1.690219 ATGACCCGCACTGGATCCTC 61.690 60.000 14.23 0.00 42.00 3.71
4768 5344 1.690633 ATGACCCGCACTGGATCCT 60.691 57.895 14.23 0.00 42.00 3.24
4769 5345 1.524621 CATGACCCGCACTGGATCC 60.525 63.158 4.20 4.20 42.00 3.36
4770 5346 1.524621 CCATGACCCGCACTGGATC 60.525 63.158 0.00 0.00 42.00 3.36
4779 5355 1.486310 TGAAAGGAGATCCATGACCCG 59.514 52.381 0.92 0.00 38.89 5.28
4833 5409 2.109126 GCTCCGTGATGGGCTGAAC 61.109 63.158 0.00 0.00 38.76 3.18
4922 5498 3.871006 TGATCCAACGTTATGCATGAGTC 59.129 43.478 10.16 0.00 0.00 3.36
4929 5505 2.855953 GCATGCTGATCCAACGTTATGC 60.856 50.000 11.37 11.37 33.83 3.14
4930 5506 2.355444 TGCATGCTGATCCAACGTTATG 59.645 45.455 20.33 0.00 0.00 1.90
4931 5507 2.642427 TGCATGCTGATCCAACGTTAT 58.358 42.857 20.33 0.00 0.00 1.89
5017 5593 1.734655 AAAAGACCTCCTCTCCAGCA 58.265 50.000 0.00 0.00 0.00 4.41
5044 5620 7.651704 AGTCAAAAGGCACAAACAACATATAAC 59.348 33.333 0.00 0.00 0.00 1.89
5046 5622 7.283625 AGTCAAAAGGCACAAACAACATATA 57.716 32.000 0.00 0.00 0.00 0.86
5048 5624 5.451242 GGAGTCAAAAGGCACAAACAACATA 60.451 40.000 0.00 0.00 0.00 2.29
5097 5678 1.021202 CAAAAGACCCACACGAGCAA 58.979 50.000 0.00 0.00 0.00 3.91
5098 5679 1.444119 GCAAAAGACCCACACGAGCA 61.444 55.000 0.00 0.00 0.00 4.26
5099 5680 1.166531 AGCAAAAGACCCACACGAGC 61.167 55.000 0.00 0.00 0.00 5.03
5100 5681 1.002468 CAAGCAAAAGACCCACACGAG 60.002 52.381 0.00 0.00 0.00 4.18
5101 5682 1.021202 CAAGCAAAAGACCCACACGA 58.979 50.000 0.00 0.00 0.00 4.35
5102 5683 0.738389 ACAAGCAAAAGACCCACACG 59.262 50.000 0.00 0.00 0.00 4.49
5103 5684 1.748493 TGACAAGCAAAAGACCCACAC 59.252 47.619 0.00 0.00 0.00 3.82
5104 5685 2.136298 TGACAAGCAAAAGACCCACA 57.864 45.000 0.00 0.00 0.00 4.17
5105 5686 2.165437 TGTTGACAAGCAAAAGACCCAC 59.835 45.455 0.00 0.00 38.44 4.61
5106 5687 2.165437 GTGTTGACAAGCAAAAGACCCA 59.835 45.455 0.00 0.00 38.44 4.51
5107 5688 2.165437 TGTGTTGACAAGCAAAAGACCC 59.835 45.455 0.00 0.00 38.44 4.46
5108 5689 3.179048 GTGTGTTGACAAGCAAAAGACC 58.821 45.455 0.00 0.00 38.44 3.85
5109 5690 3.608073 GTGTGTGTTGACAAGCAAAAGAC 59.392 43.478 0.00 0.00 38.23 3.01
5110 5691 3.254411 TGTGTGTGTTGACAAGCAAAAGA 59.746 39.130 0.00 0.00 38.44 2.52
5111 5692 3.573598 TGTGTGTGTTGACAAGCAAAAG 58.426 40.909 0.00 0.00 38.44 2.27
5112 5693 3.650070 TGTGTGTGTTGACAAGCAAAA 57.350 38.095 0.00 0.00 38.44 2.44
5113 5694 3.650070 TTGTGTGTGTTGACAAGCAAA 57.350 38.095 0.00 0.00 38.44 3.68
5114 5695 3.865011 ATTGTGTGTGTTGACAAGCAA 57.135 38.095 0.00 0.00 35.60 3.91
5115 5696 3.509740 CAATTGTGTGTGTTGACAAGCA 58.490 40.909 0.00 0.00 35.60 3.91
5116 5697 2.282290 GCAATTGTGTGTGTTGACAAGC 59.718 45.455 7.40 0.00 35.60 4.01
5117 5698 3.509740 TGCAATTGTGTGTGTTGACAAG 58.490 40.909 7.40 0.00 35.60 3.16
5118 5699 3.582714 TGCAATTGTGTGTGTTGACAA 57.417 38.095 7.40 0.00 36.54 3.18
5119 5700 3.119209 ACATGCAATTGTGTGTGTTGACA 60.119 39.130 14.38 0.00 0.00 3.58
5120 5701 3.446799 ACATGCAATTGTGTGTGTTGAC 58.553 40.909 14.38 0.00 0.00 3.18
5121 5702 3.129988 TGACATGCAATTGTGTGTGTTGA 59.870 39.130 18.37 4.06 0.00 3.18
5122 5703 3.445857 TGACATGCAATTGTGTGTGTTG 58.554 40.909 18.37 5.21 0.00 3.33
5123 5704 3.797451 TGACATGCAATTGTGTGTGTT 57.203 38.095 18.37 0.00 0.00 3.32
5128 5709 5.417811 TGAAGTTTTGACATGCAATTGTGT 58.582 33.333 7.40 4.26 36.15 3.72
5131 5712 6.592798 AGTTGAAGTTTTGACATGCAATTG 57.407 33.333 0.00 0.00 36.15 2.32
5150 5731 5.234116 GTGCCCAAATAAGTTCAACAAGTTG 59.766 40.000 6.60 6.60 41.71 3.16
5156 5737 4.621034 CGAATGTGCCCAAATAAGTTCAAC 59.379 41.667 0.00 0.00 0.00 3.18
5169 5750 1.315257 ATGCAGGAACGAATGTGCCC 61.315 55.000 0.00 0.00 46.28 5.36
5171 5752 0.804364 TCATGCAGGAACGAATGTGC 59.196 50.000 0.00 0.00 36.42 4.57
5172 5753 1.131126 GGTCATGCAGGAACGAATGTG 59.869 52.381 0.92 0.00 0.00 3.21
5173 5754 1.453155 GGTCATGCAGGAACGAATGT 58.547 50.000 0.92 0.00 0.00 2.71
5180 5761 1.278985 AGATTGTCGGTCATGCAGGAA 59.721 47.619 0.92 0.00 0.00 3.36
5181 5762 0.904649 AGATTGTCGGTCATGCAGGA 59.095 50.000 0.00 0.00 0.00 3.86
5191 7101 1.539827 GGGTTGGTTTCAGATTGTCGG 59.460 52.381 0.00 0.00 0.00 4.79
5219 7129 3.689347 TGTCCTCCAACTCCAATTCATG 58.311 45.455 0.00 0.00 0.00 3.07
5220 7130 4.275810 CATGTCCTCCAACTCCAATTCAT 58.724 43.478 0.00 0.00 0.00 2.57
5222 7132 2.424956 GCATGTCCTCCAACTCCAATTC 59.575 50.000 0.00 0.00 0.00 2.17
5223 7133 2.225091 TGCATGTCCTCCAACTCCAATT 60.225 45.455 0.00 0.00 0.00 2.32
5224 7134 1.355381 TGCATGTCCTCCAACTCCAAT 59.645 47.619 0.00 0.00 0.00 3.16
5225 7135 0.770499 TGCATGTCCTCCAACTCCAA 59.230 50.000 0.00 0.00 0.00 3.53
5226 7136 0.994247 ATGCATGTCCTCCAACTCCA 59.006 50.000 0.00 0.00 0.00 3.86
5227 7137 1.386533 CATGCATGTCCTCCAACTCC 58.613 55.000 18.91 0.00 0.00 3.85
5230 8579 1.108776 ATGCATGCATGTCCTCCAAC 58.891 50.000 31.74 8.94 35.03 3.77
5250 8599 1.338294 CTGCAAGAAAATGCCCATGCA 60.338 47.619 0.00 0.00 46.10 3.96
5251 8600 1.338389 ACTGCAAGAAAATGCCCATGC 60.338 47.619 0.00 0.00 45.83 4.06
5252 8601 2.739913 CAACTGCAAGAAAATGCCCATG 59.260 45.455 0.00 0.00 45.83 3.66
5253 8602 2.872842 GCAACTGCAAGAAAATGCCCAT 60.873 45.455 0.00 0.00 45.83 4.00
5254 8603 1.540797 GCAACTGCAAGAAAATGCCCA 60.541 47.619 0.00 0.00 45.83 5.36
5267 8616 1.072159 AGGACAGGACTGCAACTGC 59.928 57.895 11.39 0.00 38.25 4.40
5288 8637 1.388837 AAGTTGTTGACCCGCCAACC 61.389 55.000 0.00 0.00 44.20 3.77
5381 8732 3.112075 CGTCTCGCGTGCAACCAT 61.112 61.111 5.77 0.00 35.54 3.55
5437 8788 1.512926 ACTGTGGTCAAACTGATCGC 58.487 50.000 0.00 0.00 38.43 4.58
5468 8819 3.349927 CATGCATCAGAAGGTCCAGAAA 58.650 45.455 0.00 0.00 0.00 2.52
5512 8863 0.110486 TTCTGGGCAGAGTTTGGGAC 59.890 55.000 0.00 0.00 38.88 4.46
5522 8873 5.544650 ACAAAATGAATTTCTTCTGGGCAG 58.455 37.500 0.00 0.00 32.29 4.85
5525 8876 6.523840 TGGAACAAAATGAATTTCTTCTGGG 58.476 36.000 0.00 0.00 31.92 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.